Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029420 | XP_003624235.1 | 93.750 | 336 | 18 | 3 | 1 | 334 | 1 | 335 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029420 | sp|Q9T072|BH025_ARATH | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.31e-35 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029420 | G7KSG4 | 93.750 | 336 | 18 | 3 | 1 | 334 | 1 | 335 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1029420 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0795070 | Msa1029420 | 0.801284 | 9.681426e-49 | -8.615850e-47 |
| Msa0187030 | Msa1029420 | 0.801322 | 9.510520e-49 | -8.615850e-47 |
| Msa0402180 | Msa1029420 | 0.804076 | 2.569110e-49 | -8.615850e-47 |
| Msa1024740 | Msa1029420 | 0.804843 | 1.778255e-49 | -8.615850e-47 |
| Msa1029420 | Msa1033660 | 0.800332 | 1.514942e-48 | -8.615850e-47 |
| Msa1029420 | Msa1068280 | 0.983029 | 1.221626e-156 | -8.615850e-47 |
| Msa1029420 | Msa1108790 | 0.811099 | 8.291494e-51 | -8.615850e-47 |
| Msa1029420 | Msa1156420 | 0.957441 | 2.692298e-115 | -8.615850e-47 |
| Msa0483800 | Msa1029420 | 0.817934 | 2.548333e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029420 | MtrunA17_Chr7g0249811 | 93.750 | 336 | 18 | 3 | 1 | 334 | 1 | 335 | 0.0 | 598 |
| Msa1029420 | MtrunA17_Chr8g0336681 | 39.344 | 366 | 162 | 13 | 1 | 332 | 1 | 340 | 9.32e-57 | 187 |
| Msa1029420 | MtrunA17_Chr4g0002801 | 36.712 | 365 | 160 | 11 | 1 | 328 | 1 | 331 | 6.84e-52 | 174 |
| Msa1029420 | MtrunA17_Chr2g0333641 | 35.897 | 351 | 155 | 9 | 1 | 326 | 1 | 306 | 1.16e-51 | 173 |
| Msa1029420 | MtrunA17_Chr2g0333621 | 36.901 | 355 | 152 | 10 | 1 | 327 | 1 | 311 | 4.14e-51 | 172 |
| Msa1029420 | MtrunA17_Chr4g0002781 | 34.853 | 373 | 175 | 11 | 1 | 328 | 1 | 350 | 5.90e-49 | 167 |
| Msa1029420 | MtrunA17_Chr5g0400661 | 35.461 | 282 | 133 | 5 | 95 | 327 | 53 | 334 | 8.90e-43 | 150 |
| Msa1029420 | MtrunA17_Chr5g0400621 | 42.408 | 191 | 101 | 1 | 148 | 329 | 141 | 331 | 5.67e-41 | 145 |
| Msa1029420 | MtrunA17_Chr4g0054561 | 45.251 | 179 | 91 | 2 | 155 | 326 | 146 | 324 | 2.13e-40 | 144 |
| Msa1029420 | MtrunA17_Chr4g0049331 | 40.164 | 244 | 123 | 6 | 101 | 323 | 62 | 303 | 4.43e-40 | 143 |
| Msa1029420 | MtrunA17_Chr2g0333611 | 43.548 | 186 | 97 | 3 | 153 | 331 | 35 | 219 | 2.41e-39 | 138 |
| Msa1029420 | MtrunA17_Chr5g0400671 | 41.243 | 177 | 98 | 1 | 157 | 327 | 147 | 323 | 1.65e-38 | 139 |
| Msa1029420 | MtrunA17_Chr4g0054551 | 43.575 | 179 | 94 | 2 | 155 | 326 | 146 | 324 | 4.97e-38 | 138 |
| Msa1029420 | MtrunA17_Chr6g0468491 | 42.857 | 182 | 94 | 3 | 152 | 323 | 124 | 305 | 3.92e-37 | 135 |
| Msa1029420 | MtrunA17_Chr2g0307131 | 41.176 | 187 | 100 | 2 | 152 | 328 | 166 | 352 | 6.45e-37 | 135 |
| Msa1029420 | MtrunA17_Chr4g0054581 | 38.579 | 197 | 106 | 2 | 152 | 334 | 186 | 381 | 2.05e-36 | 135 |
| Msa1029420 | MtrunA17_Chr2g0307141 | 41.111 | 180 | 97 | 1 | 163 | 333 | 182 | 361 | 6.62e-36 | 133 |
| Msa1029420 | MtrunA17_Chr4g0033391 | 36.792 | 212 | 110 | 4 | 127 | 328 | 120 | 317 | 7.97e-35 | 129 |
| Msa1029420 | MtrunA17_Chr7g0225901 | 38.710 | 186 | 98 | 4 | 132 | 308 | 63 | 241 | 2.93e-34 | 126 |
| Msa1029420 | MtrunA17_Chr4g0033291 | 34.118 | 255 | 152 | 5 | 90 | 328 | 71 | 325 | 3.74e-34 | 127 |
| Msa1029420 | MtrunA17_Chr2g0280161 | 42.442 | 172 | 89 | 2 | 162 | 323 | 175 | 346 | 5.14e-33 | 125 |
| Msa1029420 | MtrunA17_Chr2g0333541 | 44.565 | 184 | 88 | 3 | 152 | 323 | 83 | 264 | 5.61e-33 | 123 |
| Msa1029420 | MtrunA17_Chr4g0033281 | 35.071 | 211 | 125 | 4 | 132 | 330 | 118 | 328 | 9.01e-31 | 119 |
| Msa1029420 | MtrunA17_Chr4g0054621 | 30.196 | 255 | 160 | 5 | 82 | 323 | 84 | 333 | 5.67e-30 | 117 |
| Msa1029420 | MtrunA17_Chr4g0054571 | 35.950 | 242 | 123 | 7 | 117 | 328 | 91 | 330 | 2.54e-29 | 115 |
| Msa1029420 | MtrunA17_Chr5g0400641 | 40.667 | 150 | 80 | 1 | 167 | 307 | 1 | 150 | 6.78e-29 | 109 |
| Msa1029420 | MtrunA17_Chr6g0468461 | 37.037 | 162 | 96 | 2 | 146 | 307 | 156 | 311 | 1.02e-25 | 105 |
| Msa1029420 | MtrunA17_Chr4g0002851 | 38.000 | 150 | 83 | 3 | 174 | 323 | 53 | 192 | 9.52e-23 | 94.0 |
| Msa1029420 | MtrunA17_Chr7g0233441 | 37.143 | 140 | 81 | 2 | 187 | 323 | 57 | 192 | 2.79e-22 | 92.8 |
| Msa1029420 | MtrunA17_Chr4g0002831 | 37.748 | 151 | 91 | 3 | 174 | 323 | 52 | 200 | 2.36e-20 | 87.8 |
| Msa1029420 | MtrunA17_Chr8g0336671 | 64.000 | 50 | 17 | 1 | 148 | 197 | 20 | 68 | 1.85e-13 | 65.1 |
| Msa1029420 | MtrunA17_Chr8g0346161 | 25.500 | 200 | 127 | 6 | 134 | 313 | 256 | 453 | 2.54e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029420 | AT4G37850.2 | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.37e-36 | 133 |
| Msa1029420 | AT4G37850.1 | 39.013 | 223 | 115 | 6 | 118 | 326 | 109 | 324 | 3.37e-36 | 133 |
| Msa1029420 | AT2G22770.1 | 40.609 | 197 | 93 | 2 | 156 | 328 | 124 | 320 | 8.49e-36 | 132 |
| Msa1029420 | AT2G22750.2 | 38.636 | 264 | 117 | 7 | 73 | 322 | 65 | 297 | 1.45e-32 | 123 |
| Msa1029420 | AT2G22750.5 | 38.636 | 264 | 117 | 7 | 73 | 322 | 89 | 321 | 2.58e-32 | 123 |
| Msa1029420 | AT2G22750.3 | 38.636 | 264 | 117 | 7 | 73 | 322 | 93 | 325 | 2.73e-32 | 123 |
| Msa1029420 | AT2G22760.1 | 40.556 | 180 | 94 | 3 | 157 | 323 | 112 | 291 | 2.89e-32 | 122 |
| Msa1029420 | AT2G22750.1 | 39.015 | 264 | 115 | 8 | 73 | 322 | 65 | 296 | 7.45e-32 | 121 |
| Msa1029420 | AT2G22750.4 | 39.015 | 264 | 115 | 8 | 73 | 322 | 93 | 324 | 1.32e-31 | 121 |
| Msa1029420 | AT2G22760.2 | 38.650 | 163 | 88 | 2 | 157 | 307 | 112 | 274 | 6.88e-27 | 107 |
| Msa1029420 | AT4G09820.1 | 31.452 | 124 | 74 | 2 | 165 | 288 | 364 | 476 | 2.27e-14 | 74.3 |
| Msa1029420 | AT5G57150.1 | 28.485 | 165 | 99 | 5 | 165 | 311 | 55 | 218 | 2.04e-12 | 66.6 |
| Msa1029420 | AT5G57150.5 | 28.758 | 153 | 91 | 4 | 165 | 299 | 55 | 207 | 2.49e-12 | 65.9 |
| Msa1029420 | AT5G57150.2 | 28.758 | 153 | 91 | 4 | 165 | 299 | 56 | 208 | 2.59e-12 | 65.9 |
| Msa1029420 | AT5G57150.3 | 28.758 | 153 | 91 | 4 | 165 | 299 | 56 | 208 | 2.65e-12 | 65.9 |
| Msa1029420 | AT5G46760.1 | 22.881 | 236 | 154 | 4 | 75 | 291 | 329 | 555 | 8.91e-12 | 66.6 |
| Msa1029420 | AT5G57150.4 | 27.215 | 158 | 87 | 4 | 165 | 299 | 56 | 208 | 1.20e-11 | 64.7 |
| Msa1029420 | AT4G29930.2 | 25.490 | 153 | 112 | 2 | 165 | 316 | 55 | 206 | 2.94e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAATTTGATTTCTTATA+TGG | 0.194480 | 7_1:+62865202 | Msa1029420:CDS |
| TAATATTGTTGGTAAGAATT+TGG | 0.200458 | 7_1:+62868207 | Msa1029420:three_prime_UTR |
| CCCAATTGTAATTATAATAA+TGG | 0.245776 | 7_1:+62868020 | Msa1029420:three_prime_UTR |
| CAGGGCCGTTCCTGCGAATA+TGG | 0.256571 | 7_1:+62868314 | Msa1029420:three_prime_UTR |
| GCCACATACCTTCTATCTTT+TGG | 0.267929 | 7_1:+62865630 | Msa1029420:CDS |
| CTCCAACTCAATCAAGTCTT+TGG | 0.295695 | 7_1:+62865584 | Msa1029420:CDS |
| TCAAAAGCGCATTAAAGAAT+TGG | 0.305540 | 7_1:+62866805 | Msa1029420:CDS |
| TATTCAAAAGGGTCACTTTA+GGG | 0.305647 | 7_1:+62865145 | Msa1029420:five_prime_UTR |
| ATATTCAAAAGGGTCACTTT+AGG | 0.307799 | 7_1:+62865144 | Msa1029420:five_prime_UTR |
| TCCATTATTATAATTACAAT+TGG | 0.314162 | 7_1:-62868021 | None:intergenic |
| GATTTCCACTTGAATATTGC+TGG | 0.322703 | 7_1:-62866857 | None:intergenic |
| CATGATACCTGGCTTGAAAA+AGG | 0.331924 | 7_1:+62865836 | Msa1029420:CDS |
| GAAGAGGGTTCACATGATTC+TGG | 0.333045 | 7_1:-62865402 | None:intergenic |
| CCATTTCTACTTTCTTTGAT+TGG | 0.344126 | 7_1:+62868063 | Msa1029420:three_prime_UTR |
| CCATTATTATAATTACAATT+GGG | 0.354808 | 7_1:-62868020 | None:intergenic |
| CTGCTAGTGCATCAAAATAA+AGG | 0.360206 | 7_1:+62867992 | Msa1029420:three_prime_UTR |
| TTCAAGAGATGTAATATTGT+TGG | 0.361341 | 7_1:+62868196 | Msa1029420:three_prime_UTR |
| GAGTATATTCAAATCGCATC+TGG | 0.373851 | 7_1:+62868245 | Msa1029420:three_prime_UTR |
| GACAGTACAAGATCACTTAA+TGG | 0.377290 | 7_1:+62865761 | Msa1029420:CDS |
| TGTGACATTGGTTCAATGAT+TGG | 0.382838 | 7_1:-62865669 | None:intergenic |
| AGTTGTTGTACTATTGCCTT+GGG | 0.387217 | 7_1:-62865445 | None:intergenic |
| CACATGATTCTGGTTCTTCA+AGG | 0.387684 | 7_1:-62865392 | None:intergenic |
| CCAATCAAAGAAAGTAGAAA+TGG | 0.415655 | 7_1:-62868063 | None:intergenic |
| AAATCTGAGAAAATATCTAT+TGG | 0.423346 | 7_1:+62867943 | Msa1029420:CDS |
| TGTAATCAACATTTGTGCTC+AGG | 0.432810 | 7_1:+62867075 | Msa1029420:CDS |
| TAGTTGTTGTACTATTGCCT+TGG | 0.441021 | 7_1:-62865446 | None:intergenic |
| CTATACCAGTCATATTCAAA+AGG | 0.442542 | 7_1:+62865133 | Msa1029420:five_prime_UTR |
| TTGAGTTACCAAAAGATAGA+AGG | 0.445013 | 7_1:-62865638 | None:intergenic |
| ATAATGGAATGAGGATGTAT+TGG | 0.445940 | 7_1:+62868036 | Msa1029420:three_prime_UTR |
| AAGCAACAAAGAAGGTTAGA+AGG | 0.446951 | 7_1:+62865730 | Msa1029420:CDS |
| TGGCTGAGAGGAAGAGGAGA+AGG | 0.451096 | 7_1:+62865781 | Msa1029420:CDS |
| GCACTTTCAGCCATGATACC+TGG | 0.455730 | 7_1:+62865825 | Msa1029420:CDS |
| TTCCAAAGACTTGATTGAGT+TGG | 0.458779 | 7_1:-62865586 | None:intergenic |
| CTCTCTTCAATTTGCAACAA+TGG | 0.461302 | 7_1:+62865169 | Msa1029420:exon |
| AAAGGACAAAATACTATTTG+TGG | 0.476362 | 7_1:-62865499 | None:intergenic |
| AAGGACAAAATACTATTTGT+GGG | 0.492056 | 7_1:-62865498 | None:intergenic |
| ATGACTGGTATAGAGTTGTT+AGG | 0.492555 | 7_1:-62865123 | None:intergenic |
| GGCTGAGAGGAAGAGGAGAA+GGG | 0.495214 | 7_1:+62865782 | Msa1029420:CDS |
| TGAAGCTAGAGTCAAAGAAA+AGG | 0.495694 | 7_1:+62866928 | Msa1029420:CDS |
| ACTTAATGGCTGAGAGGAAG+AGG | 0.503095 | 7_1:+62865775 | Msa1029420:CDS |
| ACAACATGGTTATTAATCAC+AGG | 0.508793 | 7_1:+62868295 | Msa1029420:three_prime_UTR |
| TGCAACAATGGAGGATGCAC+TGG | 0.516087 | 7_1:+62865181 | Msa1029420:exon |
| ACAACTATAATAAATGTTGA+AGG | 0.516555 | 7_1:+62865462 | Msa1029420:CDS |
| TCTGAGAAAATATCTATTGG+AGG | 0.519320 | 7_1:+62867946 | Msa1029420:CDS |
| CTTTGTTCCAATAAAACCCA+AGG | 0.520956 | 7_1:+62865429 | Msa1029420:CDS |
| CATTATTATAATTACAATTG+GGG | 0.527627 | 7_1:-62868019 | None:intergenic |
| AATCTCAAGCAGTGATTCTG+AGG | 0.530393 | 7_1:-62866906 | None:intergenic |
| AATTCATTGTGAGAAGCAAA+AGG | 0.532564 | 7_1:+62866964 | Msa1029420:CDS |
| AAAGATAGAAGGTATGTGGC+TGG | 0.543699 | 7_1:-62865627 | None:intergenic |
| ATTGGAACAAAGATAAGAAG+AGG | 0.546112 | 7_1:-62865418 | None:intergenic |
| AGTGAAGGAAGCAACAAAGA+AGG | 0.546734 | 7_1:+62865722 | Msa1029420:CDS |
| TATACCAGTCATATTCAAAA+GGG | 0.555111 | 7_1:+62865134 | Msa1029420:five_prime_UTR |
| AACCGAGCCTCCATATTCGC+AGG | 0.555589 | 7_1:-62868324 | None:intergenic |
| TTCCTGCGAATATGGAGGCT+CGG | 0.557828 | 7_1:+62868322 | Msa1029420:three_prime_UTR |
| TGAAGAAGACAGCATGGCCA+TGG | 0.560524 | 7_1:+62867907 | Msa1029420:CDS |
| GACAGATGAAGCAAGAGTGA+AGG | 0.560915 | 7_1:+62865707 | Msa1029420:CDS |
| AGCCTCCATATTCGCAGGAA+CGG | 0.565306 | 7_1:-62868319 | None:intergenic |
| TGTCACATAAAACTAAAAGA+AGG | 0.567489 | 7_1:+62865685 | Msa1029420:CDS |
| AGTAGTAGCATGTTACCATT+CGG | 0.568567 | 7_1:+62867040 | Msa1029420:CDS |
| ATTCAAAAGGGTCACTTTAG+GGG | 0.568631 | 7_1:+62865146 | Msa1029420:five_prime_UTR |
| ACCAAAAGATAGAAGGTATG+TGG | 0.570819 | 7_1:-62865631 | None:intergenic |
| TTGCTCATCAAATGTGGTGG+TGG | 0.571745 | 7_1:-62865349 | None:intergenic |
| AATTTGGCTTTGTAAACGCA+TGG | 0.572879 | 7_1:+62868223 | Msa1029420:three_prime_UTR |
| GTAATTATAATAATGGAATG+AGG | 0.575299 | 7_1:+62868027 | Msa1029420:three_prime_UTR |
| CAAATCCAGCAATATTCAAG+TGG | 0.578490 | 7_1:+62866852 | Msa1029420:CDS |
| AAATAAACTTGTCTCATCAA+AGG | 0.579876 | 7_1:-62865517 | None:intergenic |
| TCTTCAATTTGCAACAATGG+AGG | 0.587612 | 7_1:+62865172 | Msa1029420:exon |
| AGTATATTCAAATCGCATCT+GGG | 0.598233 | 7_1:+62868246 | Msa1029420:three_prime_UTR |
| TTGGAACAAAGATAAGAAGA+GGG | 0.598491 | 7_1:-62865417 | None:intergenic |
| CATGGCCATGGATGACCTTG+TGG | 0.614537 | 7_1:+62867919 | Msa1029420:CDS |
| CTCTTGCTCATCAAATGTGG+TGG | 0.624271 | 7_1:-62865352 | None:intergenic |
| CAACATGGTTATTAATCACA+GGG | 0.626451 | 7_1:+62868296 | Msa1029420:three_prime_UTR |
| AAACTCTTGCTCATCAAATG+TGG | 0.646764 | 7_1:-62865355 | None:intergenic |
| GATGGATGAAGAAGACAGCA+TGG | 0.648869 | 7_1:+62867901 | Msa1029420:intron |
| GGCCGTTCCTGCGAATATGG+AGG | 0.653168 | 7_1:+62868317 | Msa1029420:three_prime_UTR |
| ACAAGAATAGAAGCACCGAA+TGG | 0.665943 | 7_1:-62867055 | None:intergenic |
| AAGATCACTTAATGGCTGAG+AGG | 0.675984 | 7_1:+62865769 | Msa1029420:CDS |
| TGACTATTAACAAAACAACA+TGG | 0.718867 | 7_1:+62868281 | Msa1029420:three_prime_UTR |
| TCGGTTCTAGAAGTGAAACG+AGG | 0.789263 | 7_1:+62868341 | Msa1029420:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATTTAAAAAAATT+AGG | + | chr7_1:62866004-62866023 | Msa1029420:intron | 0.0% |
| !!! | TTATATCATTATTTGTTAAT+TGG | + | chr7_1:62865268-62865287 | Msa1029420:intron | 10.0% |
| !!! | AAGAAAAAAAAGTTTTATAA+TGG | - | chr7_1:62867129-62867148 | None:intergenic | 10.0% |
| !!! | TAAATATACTTTTTTAAAAG+TGG | - | chr7_1:62867735-62867754 | None:intergenic | 10.0% |
| !! | TAAAAAAATCAAAAAAGTAA+AGG | + | chr7_1:62867794-62867813 | Msa1029420:intron | 10.0% |
| !!! | TTTTTTTTATCTTTGATCAT+AGG | + | chr7_1:62865296-62865315 | Msa1029420:intron | 15.0% |
| !! | TATATAAATTTGTACGATAA+TGG | - | chr7_1:62865946-62865965 | None:intergenic | 15.0% |
| !!! | ATGATATCTTGATTTTTTTA+GGG | - | chr7_1:62866436-62866455 | None:intergenic | 15.0% |
| !!! | TATGATATCTTGATTTTTTT+AGG | - | chr7_1:62866437-62866456 | None:intergenic | 15.0% |
| !! | TTCGTATAATTGAATATTAA+AGG | + | chr7_1:62866685-62866704 | Msa1029420:intron | 15.0% |
| !! | GAAATGATTAATATCTTATT+GGG | - | chr7_1:62867298-62867317 | None:intergenic | 15.0% |
| !! | TGAAATGATTAATATCTTAT+TGG | - | chr7_1:62867299-62867318 | None:intergenic | 15.0% |
| !!! | TTGAAAGTATTTTTCATTTT+GGG | - | chr7_1:62867396-62867415 | None:intergenic | 15.0% |
| !!! | ATTGAAAGTATTTTTCATTT+TGG | - | chr7_1:62867397-62867416 | None:intergenic | 15.0% |
| !!! | ATAAATCAATCATTTTAGAA+CGG | + | chr7_1:62867602-62867621 | Msa1029420:intron | 15.0% |
| !!! | TTTTAACAAATCTTTGTTAT+TGG | + | chr7_1:62867708-62867727 | Msa1029420:intron | 15.0% |
| !! | CATTATTATAATTACAATTG+GGG | - | chr7_1:62868022-62868041 | None:intergenic | 15.0% |
| !! | CCATTATTATAATTACAATT+GGG | - | chr7_1:62868023-62868042 | None:intergenic | 15.0% |
| !! | TCCATTATTATAATTACAAT+TGG | - | chr7_1:62868024-62868043 | None:intergenic | 15.0% |
| !! | ACAACTATAATAAATGTTGA+AGG | + | chr7_1:62865462-62865481 | Msa1029420:CDS | 20.0% |
| !! | GTTTAATGCTGTATTATTAT+CGG | + | chr7_1:62866607-62866626 | Msa1029420:intron | 20.0% |
| !! | ATTACAATATAAAGTCAGAT+GGG | - | chr7_1:62866718-62866737 | None:intergenic | 20.0% |
| !! | AATTACAATATAAAGTCAGA+TGG | - | chr7_1:62866719-62866738 | None:intergenic | 20.0% |
| !! | ATTTCTCTAATTACTATAGA+TGG | + | chr7_1:62866736-62866755 | Msa1029420:intron | 20.0% |
| !!! | ACTTTTTAAGATGAATAAGT+AGG | + | chr7_1:62867177-62867196 | Msa1029420:intron | 20.0% |
| !!! | CTTTTTAAGATGAATAAGTA+GGG | + | chr7_1:62867178-62867197 | Msa1029420:intron | 20.0% |
| !!! | ACATTTTTATTTGTGTGAAA+TGG | + | chr7_1:62867575-62867594 | Msa1029420:intron | 20.0% |
| !! | AAATCTGAGAAAATATCTAT+TGG | + | chr7_1:62867943-62867962 | Msa1029420:CDS | 20.0% |
| !! | CCCAATTGTAATTATAATAA+TGG | + | chr7_1:62868020-62868039 | Msa1029420:three_prime_UTR | 20.0% |
| !!! | GTAATTATAATAATGGAATG+AGG | + | chr7_1:62868027-62868046 | Msa1029420:three_prime_UTR | 20.0% |
| !!! | TAATATTGTTGGTAAGAATT+TGG | + | chr7_1:62868207-62868226 | Msa1029420:three_prime_UTR | 20.0% |
| ! | TATACCAGTCATATTCAAAA+GGG | + | chr7_1:62865134-62865153 | Msa1029420:five_prime_UTR | 25.0% |
| !! | GGAGAATTTGATTTCTTATA+TGG | + | chr7_1:62865202-62865221 | Msa1029420:CDS | 25.0% |
| ! | TTATCTTTGATCATAGGAAA+TGG | + | chr7_1:62865302-62865321 | Msa1029420:intron | 25.0% |
| ! | AAGGACAAAATACTATTTGT+GGG | - | chr7_1:62865501-62865520 | None:intergenic | 25.0% |
| ! | AAAGGACAAAATACTATTTG+TGG | - | chr7_1:62865502-62865521 | None:intergenic | 25.0% |
| ! | AAATAAACTTGTCTCATCAA+AGG | - | chr7_1:62865520-62865539 | None:intergenic | 25.0% |
| !!! | CTTTTAGTTTTATGTGACAT+TGG | - | chr7_1:62865684-62865703 | None:intergenic | 25.0% |
| ! | TGTCACATAAAACTAAAAGA+AGG | + | chr7_1:62865685-62865704 | Msa1029420:CDS | 25.0% |
| !!! | AAATTATTTTGAGCTTAAGC+TGG | + | chr7_1:62866356-62866375 | Msa1029420:intron | 25.0% |
| !!! | AATTATTTTGAGCTTAAGCT+GGG | + | chr7_1:62866357-62866376 | Msa1029420:intron | 25.0% |
| !! | TAAAAGTCAATGAAAAGCAT+AGG | - | chr7_1:62866555-62866574 | None:intergenic | 25.0% |
| ! | ATTAATATCTTATTGGGCTA+AGG | - | chr7_1:62867292-62867311 | None:intergenic | 25.0% |
| !!! | GACAACTTTTTTCTTCAAAT+AGG | - | chr7_1:62867374-62867393 | None:intergenic | 25.0% |
| ! | TATATTGATAAACCTCATTG+TGG | + | chr7_1:62867634-62867653 | Msa1029420:intron | 25.0% |
| !! | AACATTTACATAACCCATTT+TGG | - | chr7_1:62867675-62867694 | None:intergenic | 25.0% |
| !!! | AAAATGGGTTATGTAAATGT+TGG | + | chr7_1:62867674-62867693 | Msa1029420:intron | 25.0% |
| !! | TGATCTCTAATTTGTAATGT+TGG | + | chr7_1:62867840-62867859 | Msa1029420:intron | 25.0% |
| !! | GATCTCTAATTTGTAATGTT+GGG | + | chr7_1:62867841-62867860 | Msa1029420:intron | 25.0% |
| ! | TTTGTCACATTGAAGAAAAA+AGG | + | chr7_1:62868098-62868117 | Msa1029420:three_prime_UTR | 25.0% |
| ! | TTCAAGAGATGTAATATTGT+TGG | + | chr7_1:62868196-62868215 | Msa1029420:three_prime_UTR | 25.0% |
| ! | TGACTATTAACAAAACAACA+TGG | + | chr7_1:62868281-62868300 | Msa1029420:three_prime_UTR | 25.0% |
| CTATACCAGTCATATTCAAA+AGG | + | chr7_1:62865133-62865152 | Msa1029420:five_prime_UTR | 30.0% | |
| ! | ATATTCAAAAGGGTCACTTT+AGG | + | chr7_1:62865144-62865163 | Msa1029420:five_prime_UTR | 30.0% |
| ! | TATTCAAAAGGGTCACTTTA+GGG | + | chr7_1:62865145-62865164 | Msa1029420:five_prime_UTR | 30.0% |
| TTGGAACAAAGATAAGAAGA+GGG | - | chr7_1:62865420-62865439 | None:intergenic | 30.0% | |
| ATTGGAACAAAGATAAGAAG+AGG | - | chr7_1:62865421-62865440 | None:intergenic | 30.0% | |
| !!! | GATGAGACAAGTTTATTTTG+TGG | + | chr7_1:62865522-62865541 | Msa1029420:CDS | 30.0% |
| TTGAGTTACCAAAAGATAGA+AGG | - | chr7_1:62865641-62865660 | None:intergenic | 30.0% | |
| ! | AAGCCAAAACAGCTTTTATA+TGG | + | chr7_1:62866107-62866126 | Msa1029420:intron | 30.0% |
| ! | CATCCATATAAAAGCTGTTT+TGG | - | chr7_1:62866113-62866132 | None:intergenic | 30.0% |
| ! | AAGCCAAAACAGCTTTTATA+TGG | + | chr7_1:62866107-62866126 | Msa1029420:intron | 30.0% |
| ! | CATCCATATAAAAGCTGTTT+TGG | - | chr7_1:62866113-62866132 | None:intergenic | 30.0% |
| !!! | ATTATTTTGAGCTTAAGCTG+GGG | + | chr7_1:62866358-62866377 | Msa1029420:intron | 30.0% |
| ! | CAATGAAAAGCATAGGTATT+AGG | - | chr7_1:62866548-62866567 | None:intergenic | 30.0% |
| ! | TCAAAAGCGCATTAAAGAAT+TGG | + | chr7_1:62866805-62866824 | Msa1029420:CDS | 30.0% |
| AATTCATTGTGAGAAGCAAA+AGG | + | chr7_1:62866964-62866983 | Msa1029420:CDS | 30.0% | |
| !!! | AATCAATCATTTTAGAACGG+AGG | + | chr7_1:62867605-62867624 | Msa1029420:intron | 30.0% |
| !!! | ATCAATCATTTTAGAACGGA+GGG | + | chr7_1:62867606-62867625 | Msa1029420:intron | 30.0% |
| ! | ATTTTCTCAGATTTTCCACA+AGG | - | chr7_1:62867937-62867956 | None:intergenic | 30.0% |
| TCTGAGAAAATATCTATTGG+AGG | + | chr7_1:62867946-62867965 | Msa1029420:CDS | 30.0% | |
| !!! | TTTATTTTGATGCACTAGCA+GGG | - | chr7_1:62867993-62868012 | None:intergenic | 30.0% |
| ! | ATAATGGAATGAGGATGTAT+TGG | + | chr7_1:62868036-62868055 | Msa1029420:three_prime_UTR | 30.0% |
| CCAATCAAAGAAAGTAGAAA+TGG | - | chr7_1:62868066-62868085 | None:intergenic | 30.0% | |
| CCATTTCTACTTTCTTTGAT+TGG | + | chr7_1:62868063-62868082 | Msa1029420:three_prime_UTR | 30.0% | |
| AGTATATTCAAATCGCATCT+GGG | + | chr7_1:62868246-62868265 | Msa1029420:three_prime_UTR | 30.0% | |
| ACAACATGGTTATTAATCAC+AGG | + | chr7_1:62868295-62868314 | Msa1029420:three_prime_UTR | 30.0% | |
| CAACATGGTTATTAATCACA+GGG | + | chr7_1:62868296-62868315 | Msa1029420:three_prime_UTR | 30.0% | |
| ATGACTGGTATAGAGTTGTT+AGG | - | chr7_1:62865126-62865145 | None:intergenic | 35.0% | |
| ! | ATTCAAAAGGGTCACTTTAG+GGG | + | chr7_1:62865146-62865165 | Msa1029420:five_prime_UTR | 35.0% |
| CTCTCTTCAATTTGCAACAA+TGG | + | chr7_1:62865169-62865188 | Msa1029420:exon | 35.0% | |
| TCTTCAATTTGCAACAATGG+AGG | + | chr7_1:62865172-62865191 | Msa1029420:exon | 35.0% | |
| AAACTCTTGCTCATCAAATG+TGG | - | chr7_1:62865358-62865377 | None:intergenic | 35.0% | |
| CTTTGTTCCAATAAAACCCA+AGG | + | chr7_1:62865429-62865448 | Msa1029420:CDS | 35.0% | |
| !! | ACTATTGCCTTGGGTTTTAT+TGG | - | chr7_1:62865439-62865458 | None:intergenic | 35.0% |
| AGTTGTTGTACTATTGCCTT+GGG | - | chr7_1:62865448-62865467 | None:intergenic | 35.0% | |
| TAGTTGTTGTACTATTGCCT+TGG | - | chr7_1:62865449-62865468 | None:intergenic | 35.0% | |
| !! | AGTTGGAGCTATTACTTTTG+TGG | - | chr7_1:62865572-62865591 | None:intergenic | 35.0% |
| TTCCAAAGACTTGATTGAGT+TGG | - | chr7_1:62865589-62865608 | None:intergenic | 35.0% | |
| ! | ACCAAAAGATAGAAGGTATG+TGG | - | chr7_1:62865634-62865653 | None:intergenic | 35.0% |
| !! | TGTGACATTGGTTCAATGAT+TGG | - | chr7_1:62865672-62865691 | None:intergenic | 35.0% |
| AAGCAACAAAGAAGGTTAGA+AGG | + | chr7_1:62865730-62865749 | Msa1029420:CDS | 35.0% | |
| GACAGTACAAGATCACTTAA+TGG | + | chr7_1:62865761-62865780 | Msa1029420:CDS | 35.0% | |
| !!! | AAACTAACCTTTTTCAAGCC+AGG | - | chr7_1:62865846-62865865 | None:intergenic | 35.0% |
| ACAACATGTTTGTGTAAGAC+AGG | - | chr7_1:62866653-62866672 | None:intergenic | 35.0% | |
| CAAATCCAGCAATATTCAAG+TGG | + | chr7_1:62866852-62866871 | Msa1029420:CDS | 35.0% | |
| GATTTCCACTTGAATATTGC+TGG | - | chr7_1:62866860-62866879 | None:intergenic | 35.0% | |
| TGAAGCTAGAGTCAAAGAAA+AGG | + | chr7_1:62866928-62866947 | Msa1029420:CDS | 35.0% | |
| AGTAGTAGCATGTTACCATT+CGG | + | chr7_1:62867040-62867059 | Msa1029420:CDS | 35.0% | |
| TGTAATCAACATTTGTGCTC+AGG | + | chr7_1:62867075-62867094 | Msa1029420:CDS | 35.0% | |
| ! | ATGAATAAGTAGGGTGTCTA+GGG | + | chr7_1:62867187-62867206 | Msa1029420:intron | 35.0% |
| ! | TGAGCATTACTAAGTTGACA+GGG | - | chr7_1:62867249-62867268 | None:intergenic | 35.0% |
| TGTCAACTTAGTAATGCTCA+CGG | + | chr7_1:62867249-62867268 | Msa1029420:intron | 35.0% | |
| ATAGGTCAATCATTGTGAGA+AGG | - | chr7_1:62867356-62867375 | None:intergenic | 35.0% | |
| TGCTTATGTTCACACCAAAA+TGG | + | chr7_1:62867658-62867677 | Msa1029420:intron | 35.0% | |
| GCTTATGTTCACACCAAAAT+GGG | + | chr7_1:62867659-62867678 | Msa1029420:intron | 35.0% | |
| !!! | CTTTATTTTGATGCACTAGC+AGG | - | chr7_1:62867994-62868013 | None:intergenic | 35.0% |
| CTGCTAGTGCATCAAAATAA+AGG | + | chr7_1:62867992-62868011 | Msa1029420:three_prime_UTR | 35.0% | |
| !! | AATTTGGCTTTGTAAACGCA+TGG | + | chr7_1:62868223-62868242 | Msa1029420:three_prime_UTR | 35.0% |
| GAGTATATTCAAATCGCATC+TGG | + | chr7_1:62868245-62868264 | Msa1029420:three_prime_UTR | 35.0% | |
| ! | GTGACCCTTTTGAATATGAC+TGG | - | chr7_1:62865141-62865160 | None:intergenic | 40.0% |
| !! | CACATGATTCTGGTTCTTCA+AGG | - | chr7_1:62865395-62865414 | None:intergenic | 40.0% |
| CTCCAACTCAATCAAGTCTT+TGG | + | chr7_1:62865584-62865603 | Msa1029420:CDS | 40.0% | |
| ! | AAAGATAGAAGGTATGTGGC+TGG | - | chr7_1:62865630-62865649 | None:intergenic | 40.0% |
| ! | GCCACATACCTTCTATCTTT+TGG | + | chr7_1:62865630-62865649 | Msa1029420:CDS | 40.0% |
| AGTGAAGGAAGCAACAAAGA+AGG | + | chr7_1:62865722-62865741 | Msa1029420:CDS | 40.0% | |
| AAGATCACTTAATGGCTGAG+AGG | + | chr7_1:62865769-62865788 | Msa1029420:CDS | 40.0% | |
| !!! | CTTTTTCAAGCCAGGTATCA+TGG | - | chr7_1:62865838-62865857 | None:intergenic | 40.0% |
| ! | CATGATACCTGGCTTGAAAA+AGG | + | chr7_1:62865836-62865855 | Msa1029420:CDS | 40.0% |
| AATCTCAAGCAGTGATTCTG+AGG | - | chr7_1:62866909-62866928 | None:intergenic | 40.0% | |
| !! | ACAAGAATAGAAGCACCGAA+TGG | - | chr7_1:62867058-62867077 | None:intergenic | 40.0% |
| ! | GATGAATAAGTAGGGTGTCT+AGG | + | chr7_1:62867186-62867205 | Msa1029420:intron | 40.0% |
| ! | GTGAGCATTACTAAGTTGAC+AGG | - | chr7_1:62867250-62867269 | None:intergenic | 40.0% |
| GTCAACTTAGTAATGCTCAC+GGG | + | chr7_1:62867250-62867269 | Msa1029420:intron | 40.0% | |
| TCAACTTAGTAATGCTCACG+GGG | + | chr7_1:62867251-62867270 | Msa1029420:intron | 40.0% | |
| GTCAATCATTGTGAGAAGGA+TGG | - | chr7_1:62867352-62867371 | None:intergenic | 40.0% | |
| GAACATAAGCATCCACAATG+AGG | - | chr7_1:62867649-62867668 | None:intergenic | 40.0% | |
| ! | TGCTAAAGCTTTGATGCAGA+TGG | + | chr7_1:62867883-62867902 | Msa1029420:intron | 40.0% |
| ! | ATTTTCCACAAGGTCATCCA+TGG | - | chr7_1:62867927-62867946 | None:intergenic | 40.0% |
| TTGCTCATCAAATGTGGTGG+TGG | - | chr7_1:62865352-62865371 | None:intergenic | 45.0% | |
| CTCTTGCTCATCAAATGTGG+TGG | - | chr7_1:62865355-62865374 | None:intergenic | 45.0% | |
| GAAGAGGGTTCACATGATTC+TGG | - | chr7_1:62865405-62865424 | None:intergenic | 45.0% | |
| GACAGATGAAGCAAGAGTGA+AGG | + | chr7_1:62865707-62865726 | Msa1029420:CDS | 45.0% | |
| ACTTAATGGCTGAGAGGAAG+AGG | + | chr7_1:62865775-62865794 | Msa1029420:CDS | 45.0% | |
| GATGGATGAAGAAGACAGCA+TGG | + | chr7_1:62867901-62867920 | Msa1029420:intron | 45.0% | |
| !!! | TAATTAATTATTTTATGTAA+GGG | - | chr7_1:62867225-62867244 | None:intergenic | 5.0% |
| !!! | ATAATTAATTATTTTATGTA+AGG | - | chr7_1:62867226-62867245 | None:intergenic | 5.0% |
| TGCAACAATGGAGGATGCAC+TGG | + | chr7_1:62865181-62865200 | Msa1029420:exon | 50.0% | |
| GCACTTTCAGCCATGATACC+TGG | + | chr7_1:62865825-62865844 | Msa1029420:CDS | 50.0% | |
| TGAAGAAGACAGCATGGCCA+TGG | + | chr7_1:62867907-62867926 | Msa1029420:CDS | 50.0% | |
| AGCCTCCATATTCGCAGGAA+CGG | - | chr7_1:62868322-62868341 | None:intergenic | 50.0% | |
| TTCCTGCGAATATGGAGGCT+CGG | + | chr7_1:62868322-62868341 | Msa1029420:three_prime_UTR | 50.0% | |
| TGGCTGAGAGGAAGAGGAGA+AGG | + | chr7_1:62865781-62865800 | Msa1029420:CDS | 55.0% | |
| GGCTGAGAGGAAGAGGAGAA+GGG | + | chr7_1:62865782-62865801 | Msa1029420:CDS | 55.0% | |
| CATGGCCATGGATGACCTTG+TGG | + | chr7_1:62867919-62867938 | Msa1029420:CDS | 55.0% | |
| AACCGAGCCTCCATATTCGC+AGG | - | chr7_1:62868327-62868346 | None:intergenic | 55.0% | |
| CAGGGCCGTTCCTGCGAATA+TGG | + | chr7_1:62868314-62868333 | Msa1029420:three_prime_UTR | 60.0% | |
| GGCCGTTCCTGCGAATATGG+AGG | + | chr7_1:62868317-62868336 | Msa1029420:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 62865123 | 62868363 | 62865123 | ID=Msa1029420;Name=Msa1029420 |
| chr7_1 | mRNA | 62865123 | 62868363 | 62865123 | ID=Msa1029420-mRNA-1;Parent=Msa1029420;Name=Msa1029420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=65|1|1|1|1|1|4|375|334 |
| chr7_1 | exon | 62865123 | 62865223 | 62865123 | ID=Msa1029420-mRNA-1:exon:13514;Parent=Msa1029420-mRNA-1 |
| chr7_1 | exon | 62865318 | 62865857 | 62865318 | ID=Msa1029420-mRNA-1:exon:13515;Parent=Msa1029420-mRNA-1 |
| chr7_1 | exon | 62866755 | 62867096 | 62866755 | ID=Msa1029420-mRNA-1:exon:13516;Parent=Msa1029420-mRNA-1 |
| chr7_1 | exon | 62867902 | 62868363 | 62867902 | ID=Msa1029420-mRNA-1:exon:13517;Parent=Msa1029420-mRNA-1 |
| chr7_1 | five_prime_UTR | 62865123 | 62865187 | 62865123 | ID=Msa1029420-mRNA-1:five_prime_utr;Parent=Msa1029420-mRNA-1 |
| chr7_1 | CDS | 62865188 | 62865223 | 62865188 | ID=Msa1029420-mRNA-1:cds;Parent=Msa1029420-mRNA-1 |
| chr7_1 | CDS | 62865318 | 62865857 | 62865318 | ID=Msa1029420-mRNA-1:cds;Parent=Msa1029420-mRNA-1 |
| chr7_1 | CDS | 62866755 | 62867096 | 62866755 | ID=Msa1029420-mRNA-1:cds;Parent=Msa1029420-mRNA-1 |
| chr7_1 | CDS | 62867902 | 62867988 | 62867902 | ID=Msa1029420-mRNA-1:cds;Parent=Msa1029420-mRNA-1 |
| chr7_1 | three_prime_UTR | 62867989 | 62868363 | 62867989 | ID=Msa1029420-mRNA-1:three_prime_utr;Parent=Msa1029420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
