AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1158430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158430 MtrunA17_Chr7g0253091 98.750 480 6 0 1 480 1 480 0.0 969
Msa1158430 MtrunA17_Chr6g0461601 77.178 482 107 3 1 479 1 482 0.0 731
Msa1158430 MtrunA17_Chr4g0062771 56.118 474 199 3 6 474 15 484 0.0 545
Msa1158430 MtrunA17_Chr2g0306311 52.807 481 200 3 26 479 30 510 6.31e-178 508
Msa1158430 MtrunA17_Chr8g0383311 54.503 433 194 2 23 454 40 470 1.96e-174 499
Msa1158430 MtrunA17_Chr1g0148391 54.393 478 207 6 2 474 4 475 3.32e-173 495
Msa1158430 MtrunA17_Chr3g0138741 55.556 459 193 5 21 471 26 481 8.11e-170 487
Msa1158430 MtrunA17_Chr3g0129341 50.105 475 229 7 9 479 15 485 3.08e-157 455
Msa1158430 MtrunA17_Chr4g0069801 51.562 448 208 5 25 468 27 469 2.07e-154 448
Msa1158430 MtrunA17_Chr2g0290821 50.345 435 208 5 24 455 26 455 1.40e-153 446
Msa1158430 MtrunA17_Chr4g0076581 48.319 476 232 6 10 477 17 486 5.08e-153 444
Msa1158430 MtrunA17_Chr3g0105981 45.036 413 219 7 24 435 25 430 4.29e-115 345
Msa1158430 MtrunA17_Chr3g0144531 33.941 439 264 18 26 450 28 454 7.75e-62 208
Msa1158430 MtrunA17_Chr1g0161011 32.648 438 266 16 26 450 24 445 1.68e-60 206
Msa1158430 MtrunA17_Chr4g0034901 32.265 468 276 19 8 450 8 459 5.62e-58 198
Msa1158430 MtrunA17_Chr7g0223961 34.529 446 257 20 23 450 20 448 9.79e-58 197
Msa1158430 MtrunA17_Chr5g0439251 31.887 461 253 18 26 447 25 463 2.88e-56 194
Msa1158430 MtrunA17_Chr4g0038981 34.125 337 203 9 9 342 4 324 1.15e-55 188
Msa1158430 MtrunA17_Chr4g0038941 34.663 326 192 9 24 346 50 357 1.83e-55 189
Msa1158430 MtrunA17_Chr6g0487261 30.837 454 276 18 11 442 14 451 5.09e-55 191
Msa1158430 MtrunA17_Chr8g0389741 29.412 425 278 13 21 434 23 436 2.29e-54 189
Msa1158430 MtrunA17_Chr4g0038961 33.234 337 206 9 9 342 4 324 5.24e-54 184
Msa1158430 MtrunA17_Chr4g0039011 35.077 325 193 9 26 348 42 350 6.18e-54 185
Msa1158430 MtrunA17_Chr1g0189111 34.731 334 197 11 23 347 28 349 2.01e-53 185
Msa1158430 MtrunA17_Chr4g0046311 30.022 453 281 19 26 455 23 462 2.88e-53 186
Msa1158430 MtrunA17_Chr4g0038971 31.871 342 214 9 9 347 4 329 7.79e-53 181
Msa1158430 MtrunA17_Chr1g0177171 30.258 466 271 19 26 450 38 490 1.74e-52 184
Msa1158430 MtrunA17_Chr3g0110371 30.023 443 271 16 26 450 24 445 2.13e-52 184
Msa1158430 MtrunA17_Chr1g0146831 35.159 347 195 15 9 340 16 347 5.81e-52 180
Msa1158430 MtrunA17_Chr2g0294601 31.818 352 226 7 10 357 41 382 9.17e-52 180
Msa1158430 MtrunA17_Chr4g0003281 33.333 354 215 12 5 348 19 361 3.41e-51 178
Msa1158430 MtrunA17_Chr4g0043511 29.211 469 284 16 26 464 62 512 4.82e-50 179
Msa1158430 MtrunA17_Chr2g0294591 33.131 329 204 7 26 350 30 346 1.60e-49 173
Msa1158430 MtrunA17_Chr5g0434591 29.412 442 275 16 26 450 23 444 3.32e-49 176
Msa1158430 MtrunA17_Chr8g0378621 29.512 471 283 19 3 450 4 448 4.83e-49 175
Msa1158430 MtrunA17_Chr4g0064021 32.530 332 203 11 27 348 27 347 9.23e-49 172
Msa1158430 MtrunA17_Chr7g0250301 32.407 324 199 11 26 344 8 316 2.37e-48 169
Msa1158430 MtrunA17_Chr3g0119541 34.969 326 187 12 24 337 24 336 2.52e-48 170
Msa1158430 MtrunA17_Chr8g0339191 29.478 441 282 17 27 450 30 458 5.91e-48 171
Msa1158430 MtrunA17_Chr3g0121271 28.602 465 289 19 3 448 4 444 9.86e-48 172
Msa1158430 MtrunA17_Chr4g0075031 29.318 440 278 15 26 450 45 466 1.09e-47 172
Msa1158430 MtrunA17_Chr4g0039071 32.121 330 207 9 24 350 23 338 1.66e-47 168
Msa1158430 MtrunA17_Chr4g0043851 31.933 357 222 12 1 348 8 352 9.64e-47 167
Msa1158430 MtrunA17_Chr4g0026321 31.373 357 221 15 25 370 28 371 2.27e-46 165
Msa1158430 MtrunA17_Chr4g0039021 33.444 302 182 10 46 342 1 288 1.12e-44 158
Msa1158430 MtrunA17_Chr2g0321511 31.161 353 220 14 8 350 10 349 1.96e-44 160
Msa1158430 MtrunA17_Chr1g0174261 33.219 292 179 9 55 342 1 280 7.20e-44 157
Msa1158430 MtrunA17_Chr1g0155001 32.036 334 207 11 26 349 24 347 6.35e-43 157
Msa1158430 MtrunA17_Chr2g0285901 32.416 327 196 12 20 337 22 332 2.90e-42 154
Msa1158430 MtrunA17_Chr7g0234821 27.088 443 293 18 27 450 27 458 6.04e-41 152
Msa1158430 MtrunA17_Chr7g0250321 31.834 289 180 9 3 288 7 281 1.87e-37 139
Msa1158430 MtrunA17_Chr5g0436361 27.922 308 201 12 43 342 54 348 1.53e-25 107
Msa1158430 MtrunA17_Chr2g0294581 36.567 134 82 2 26 158 76 207 2.89e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158430 AT1G64760.1 74.444 450 111 2 6 455 8 453 0.0 689
Msa1158430 AT1G64760.2 74.444 450 111 2 6 455 8 453 0.0 689
Msa1158430 AT2G19440.2 74.222 450 113 2 6 455 3 449 0.0 689
Msa1158430 AT2G19440.1 74.222 450 113 2 6 455 3 449 0.0 689
Msa1158430 AT3G04010.1 68.151 449 141 2 23 470 30 477 0.0 630
Msa1158430 AT5G18220.1 66.245 474 148 5 9 477 13 479 0.0 625
Msa1158430 AT3G24330.1 53.947 456 207 3 26 479 39 493 4.10e-175 501
Msa1158430 AT5G64790.1 55.727 454 191 3 6 458 15 459 3.75e-174 498
Msa1158430 AT4G31140.1 53.209 483 212 7 6 479 6 483 7.10e-173 495
Msa1158430 AT5G58090.1 54.965 433 190 4 26 456 22 451 7.29e-167 479
Msa1158430 AT5G20870.1 52.489 442 195 6 23 454 27 463 4.73e-150 437
Msa1158430 AT4G17180.1 48.864 440 212 5 24 461 23 451 1.72e-146 427
Msa1158430 AT5G58480.1 44.295 447 237 7 23 466 23 460 8.60e-124 370
Msa1158430 AT5G55180.2 33.803 426 257 15 26 436 27 442 2.28e-66 221
Msa1158430 AT5G55180.1 33.182 440 269 15 26 450 27 456 2.43e-66 221
Msa1158430 AT2G16230.1 33.790 438 264 16 26 450 25 449 4.50e-65 218
Msa1158430 AT2G05790.1 33.333 462 253 21 26 450 25 468 9.90e-64 214
Msa1158430 AT3G55430.1 34.240 441 260 17 23 450 26 449 3.48e-63 212
Msa1158430 AT2G39640.1 32.522 452 269 17 9 448 13 440 5.64e-60 206
Msa1158430 AT4G26830.1 31.579 456 284 17 10 450 9 451 1.39e-59 202
Msa1158430 AT4G26830.2 32.273 440 270 17 26 450 29 455 9.12e-59 201
Msa1158430 AT2G01630.1 31.111 450 274 17 26 461 23 450 1.08e-57 199
Msa1158430 AT2G01630.3 30.716 433 269 16 26 444 23 438 1.02e-56 194
Msa1158430 AT4G34480.1 33.030 439 263 17 26 450 26 447 2.83e-56 195
Msa1158430 AT3G13560.4 33.333 438 262 15 26 450 26 446 3.38e-56 195
Msa1158430 AT3G13560.1 33.333 438 262 15 26 450 26 446 3.38e-56 195
Msa1158430 AT3G13560.2 33.333 438 262 15 26 450 26 446 3.38e-56 195
Msa1158430 AT3G13560.5 33.333 438 262 15 26 450 26 446 3.38e-56 195
Msa1158430 AT3G13560.3 33.333 438 262 15 26 450 26 446 3.38e-56 195
Msa1158430 AT3G07320.1 32.200 441 271 18 27 450 26 455 5.27e-56 193
Msa1158430 AT1G66250.1 30.543 442 269 15 26 450 32 452 1.06e-55 194
Msa1158430 AT5G24318.1 29.149 470 286 19 7 450 7 455 1.95e-54 189
Msa1158430 AT5G24318.2 29.348 460 278 19 7 440 7 445 4.26e-54 188
Msa1158430 AT4G16260.1 32.722 327 206 7 24 348 22 336 1.87e-53 183
Msa1158430 AT1G11820.2 30.023 443 271 16 26 450 44 465 2.14e-53 187
Msa1158430 AT4G14080.1 31.236 445 273 20 26 450 42 473 2.80e-53 186
Msa1158430 AT1G11820.3 30.068 439 268 16 26 446 44 461 7.03e-53 185
Msa1158430 AT3G23770.1 31.696 448 270 21 26 450 37 471 4.57e-52 183
Msa1158430 AT4G16260.2 33.228 316 196 8 36 348 4 307 5.00e-52 179
Msa1158430 AT3G57270.1 33.951 324 200 9 26 346 27 339 5.55e-51 177
Msa1158430 AT5G56590.1 29.139 453 280 17 21 451 21 454 6.44e-51 181
Msa1158430 AT3G57260.1 32.749 342 209 10 9 346 14 338 1.13e-50 176
Msa1158430 AT3G57260.2 32.749 342 209 10 9 346 30 354 1.46e-50 176
Msa1158430 AT2G26600.1 31.461 356 220 12 21 363 29 373 1.03e-49 174
Msa1158430 AT1G30080.2 32.174 345 212 11 4 337 12 345 1.13e-49 174
Msa1158430 AT1G30080.1 32.174 345 212 11 4 337 12 345 1.56e-49 175
Msa1158430 AT5G42720.1 35.514 321 189 11 26 337 26 337 5.38e-49 174
Msa1158430 AT3G15800.1 32.743 339 206 12 21 348 38 365 3.92e-48 171
Msa1158430 AT5G42100.1 35.119 336 195 13 23 346 24 348 1.45e-47 170
Msa1158430 AT5G42100.2 35.119 336 195 13 23 346 24 348 1.47e-47 170
Msa1158430 AT4G34480.2 36.533 323 182 14 26 337 26 336 2.66e-47 167
Msa1158430 AT1G32860.1 33.538 325 192 12 26 338 29 341 1.43e-46 167
Msa1158430 AT2G01630.2 31.138 334 209 11 26 348 23 346 9.35e-46 164
Msa1158430 AT5G24318.4 30.484 351 214 13 7 342 7 342 3.22e-45 162
Msa1158430 AT4G29360.1 26.294 483 306 16 5 452 10 477 3.09e-44 163
Msa1158430 AT3G57240.1 31.707 328 201 11 19 342 28 336 4.32e-44 158
Msa1158430 AT4G18340.2 31.471 340 211 12 9 338 17 344 5.24e-44 159
Msa1158430 AT4G18340.1 31.176 340 212 12 9 338 17 344 8.68e-44 159
Msa1158430 AT4G29360.2 25.971 489 310 16 5 452 10 487 1.06e-43 162
Msa1158430 AT1G11820.1 29.940 334 215 10 26 349 44 368 6.37e-42 154
Msa1158430 AT3G61810.1 28.869 336 207 12 26 347 55 372 6.88e-40 148
Msa1158430 AT2G27500.2 29.377 337 217 11 24 350 27 352 1.46e-39 147
Msa1158430 AT2G27500.1 29.377 337 217 11 24 350 27 352 2.33e-39 147
Msa1158430 AT4G34480.3 32.665 349 207 15 115 450 3 336 5.91e-39 145
Msa1158430 AT3G46570.1 30.117 342 215 15 11 342 13 340 3.17e-37 140
Msa1158430 AT1G77780.1 29.412 323 208 9 27 344 25 332 1.67e-34 133
Msa1158430 AT2G26600.2 30.714 280 171 11 96 363 11 279 2.13e-34 131
Msa1158430 AT5G24318.3 29.641 334 196 15 138 450 1 316 1.79e-33 129
Msa1158430 AT5G20390.1 28.834 326 210 11 26 344 33 343 1.30e-32 127
Msa1158430 AT5G20340.1 27.619 315 207 10 26 334 43 342 6.00e-30 120
Msa1158430 AT3G55780.1 26.000 350 229 12 26 357 31 368 7.91e-30 120
Msa1158430 AT1G77790.1 27.536 345 227 11 6 342 10 339 1.08e-29 119
Msa1158430 AT5G20330.1 26.393 341 219 11 11 334 8 333 1.40e-29 119
Msa1158430 AT1G33220.1 27.597 308 205 9 19 320 27 322 4.40e-29 117
Msa1158430 AT2G27500.3 29.123 285 181 11 76 350 1 274 5.27e-29 116
Msa1158430 AT5G20560.1 26.984 315 210 10 26 334 34 334 5.30e-28 114

Find 129 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATAGACATCTGCGTTTA+AGG 0.135341 7_4:-47830538 None:intergenic
CATCAAAGACGTTGGTATAT+TGG 0.201622 7_4:-47830770 None:intergenic
ATTATAAACGTGCTCAATAT+TGG 0.203608 7_4:+47828899 Msa1158430:CDS
AACATCTTCACAACAGTTTC+TGG 0.211606 7_4:-47828751 None:intergenic
TGGATTCCATTGTCAGTTAT+TGG 0.212683 7_4:-47830750 None:intergenic
GAGAGAGAAGGGAACGGTTT+TGG 0.216296 7_4:-47828536 None:intergenic
ATTTCAGCAAGTTGATTATT+AGG 0.225555 7_4:-47828871 None:intergenic
CCTACTTCTCCTACCAAAAT+TGG 0.271582 7_4:-47830846 None:intergenic
GTTGTTGATGTTAGGATTAA+TGG 0.274912 7_4:+47828660 Msa1158430:CDS
ATTAACTTTGCTTGCACATT+TGG 0.278411 7_4:+47831215 Msa1158430:CDS
TGCAACAACCTTGATGCTAA+TGG 0.283164 7_4:+47831269 Msa1158430:CDS
TTTCGGCGACACGCCAATTT+TGG 0.288643 7_4:+47830833 Msa1158430:CDS
AAGTTTCCGATGGATCTTTC+GGG 0.294935 7_4:+47831083 Msa1158430:CDS
GCTCTCAAATCGATCGGTTT+CGG 0.295941 7_4:+47830816 Msa1158430:CDS
TAAGGGTACTGTTGCCTTTA+CGG 0.296654 7_4:-47830520 None:intergenic
TGGAAGGGCTTGGTGTAAAC+TGG 0.297579 7_4:+47828701 Msa1158430:CDS
TTCATCGAAGTTTATCTGTT+TGG 0.307651 7_4:+47830978 Msa1158430:CDS
TCTTATTGCATTGCCGGAAT+TGG 0.311120 7_4:-47830895 None:intergenic
GTAGAATCTTATTGCATTGC+CGG 0.319258 7_4:-47830901 None:intergenic
GGGTAAATGTTGACAGTAAA+TGG 0.333092 7_4:-47830660 None:intergenic
TTCCATCTGCGGGAATATTT+CGG 0.334659 7_4:+47830580 Msa1158430:CDS
TTTACAATGTTGTTGATGTT+AGG 0.335818 7_4:+47828652 Msa1158430:CDS
AGACGGTGATAGTGATGAAA+TGG 0.342594 7_4:-47828444 None:intergenic
CAGATAAACTTCGATGAATC+CGG 0.350042 7_4:-47830973 None:intergenic
TTATAAACGTGCTCAATATT+GGG 0.352564 7_4:+47828900 Msa1158430:CDS
GTGAAGATGTTGAAGGATAA+TGG 0.352574 7_4:+47828763 Msa1158430:CDS
GTTACTCGTTATAACTTTGA+TGG 0.354819 7_4:+47828934 Msa1158430:CDS
TGGTGTTATGTGGAAGGGCT+TGG 0.391283 7_4:+47828691 Msa1158430:CDS
GGTGACAAGAATGCCAATTC+CGG 0.398140 7_4:+47830882 Msa1158430:CDS
GAAGTTTCCGATGGATCTTT+CGG 0.401121 7_4:+47831082 Msa1158430:CDS
TTGCTGAGATCTTTAGCATC+AGG 0.401772 7_4:-47831179 None:intergenic
TTGTTGATGTTAGGATTAAT+GGG 0.405844 7_4:+47828661 Msa1158430:CDS
TTGTGAAGTTAGAGAGAGAA+GGG 0.406470 7_4:-47828547 None:intergenic
TCGAAGAAGGCGAAGTTGAA+TGG 0.408365 7_4:-47830714 None:intergenic
AGTCATGAGACCATTGATAT+CGG 0.412963 7_4:-47830604 None:intergenic
TCAACTTCGCCTTCTTCGAC+GGG 0.422981 7_4:+47830718 Msa1158430:CDS
TGAAGATGTTGAAGGATAAT+GGG 0.423140 7_4:+47828764 Msa1158430:CDS
CGATGAATCCGGGGCGGAGA+GGG 0.424811 7_4:-47830962 None:intergenic
TTCAACTTCGCCTTCTTCGA+CGG 0.430662 7_4:+47830717 Msa1158430:CDS
GACGATCCTGATTCTGCGTC+TGG 0.432976 7_4:-47831322 None:intergenic
GTACTACCAGACGCAGAATC+AGG 0.436349 7_4:+47831316 Msa1158430:CDS
ACCAAGACCAGCTTCATTGA+TGG 0.438757 7_4:-47830493 None:intergenic
TTTATCTACCCCGTCGAAGA+AGG 0.451188 7_4:-47830727 None:intergenic
TCCGCAGATATGTAGCGGTT+GGG 0.453302 7_4:+47830394 Msa1158430:intron
TACCCCTTCTTAAGTCTCTA+CGG 0.454310 7_4:+47830678 Msa1158430:CDS
ATGCTGAAGAAGGAACTATC+TGG 0.458076 7_4:-47831418 None:intergenic
AACGGAGAGGCTAAGGAGTA+AGG 0.458554 7_4:-47828311 None:intergenic
AGAGAGAAACGGAGAGGCTA+AGG 0.461912 7_4:-47828318 None:intergenic
TGATACTACAATGACTGCTT+TGG 0.463045 7_4:+47828816 Msa1158430:CDS
CTTCAAAACAAACTTCTAGT+AGG 0.464131 7_4:+47831110 Msa1158430:CDS
GCATTCTTGTCACCTTCTGT+TGG 0.465889 7_4:-47830873 None:intergenic
GGTTTCAACATTTATTTGAC+CGG 0.468679 7_4:+47831547 Msa1158430:three_prime_UTR
AAGCATTTCCATTAGCATCA+AGG 0.472386 7_4:-47831277 None:intergenic
CGAAGAAGGCGAAGTTGAAT+GGG 0.474909 7_4:-47830713 None:intergenic
CAATCAAACAAACCAATTAG+AGG 0.475078 7_4:+47828349 Msa1158430:five_prime_UTR
GACGGTGATAGTGATGAAAT+GGG 0.478927 7_4:-47828443 None:intergenic
TTCCGCAGATATGTAGCGGT+TGG 0.484860 7_4:+47830393 Msa1158430:intron
ACCCCTTCTTAAGTCTCTAC+GGG 0.484918 7_4:+47830679 Msa1158430:CDS
CAGTGTCTCTCAAAGTTACC+TGG 0.486453 7_4:-47831032 None:intergenic
GATTGTACTGCACTTGGGTA+TGG 0.490793 7_4:+47831239 Msa1158430:CDS
TGATGCAAATTTCGATACAT+TGG 0.491804 7_4:+47830788 Msa1158430:CDS
AAACAACAAAGCAGCAAATG+AGG 0.493412 7_4:-47831453 None:intergenic
TGGGGAATATTTCGATATGA+TGG 0.495745 7_4:+47831053 Msa1158430:CDS
TGTTCGCAGCGAGTCTAGAA+AGG 0.496041 7_4:-47830932 None:intergenic
GCCATCAATGAAGCTGGTCT+TGG 0.496624 7_4:+47830492 Msa1158430:CDS
AACGTGCTCAATATTGGGTT+AGG 0.498245 7_4:+47828905 Msa1158430:CDS
ATGACTGCTTTGGCTGGTAG+TGG 0.501400 7_4:+47828826 Msa1158430:CDS
TGGTAGTGGAATTGAAGTTA+TGG 0.502034 7_4:+47828840 Msa1158430:CDS
TAAATAAACTAGATATCATC+CGG 0.514578 7_4:-47831566 None:intergenic
TTGTTTCTGTCAGAGAGAAA+CGG 0.516816 7_4:-47828329 None:intergenic
GTTGAAATGTTGTCTGTAGT+AGG 0.520979 7_4:-47831374 None:intergenic
GTCATGAGACCATTGATATC+GGG 0.521177 7_4:-47830603 None:intergenic
GTTTCTGCTCTCAAATCGAT+CGG 0.522943 7_4:+47830810 Msa1158430:CDS
TTTGGAGATTGTACTGCACT+TGG 0.526951 7_4:+47831233 Msa1158430:CDS
CAAAATGCCATCAATGAAGC+TGG 0.527897 7_4:+47830486 Msa1158430:CDS
ATCAAAGAAGATGCTGAAGA+AGG 0.530104 7_4:-47831428 None:intergenic
AGATAAACTTCGATGAATCC+GGG 0.532252 7_4:-47830972 None:intergenic
TTTGTGAAGTTAGAGAGAGA+AGG 0.537861 7_4:-47828548 None:intergenic
TGCTGAGATCTTTAGCATCA+GGG 0.538134 7_4:-47831178 None:intergenic
CAAACTTCTAGTAGGTGCAC+AGG 0.538210 7_4:+47831118 Msa1158430:CDS
ATATAGACATCTGCGTTTAA+GGG 0.538392 7_4:-47830537 None:intergenic
CAGGTAACTTTGAGAGACAC+TGG 0.539845 7_4:+47831033 Msa1158430:CDS
GACAATCAAGTTCCATCTGC+GGG 0.543282 7_4:+47830570 Msa1158430:CDS
GATGAATCCGGGGCGGAGAG+GGG 0.546532 7_4:-47830961 None:intergenic
GACGCGAAGAGCATTGCTCC+AGG 0.552654 7_4:+47831014 Msa1158430:CDS
ACTACAATGACTGCTTTGGC+TGG 0.558501 7_4:+47828820 Msa1158430:CDS
ATATTTCGGCCCGATATCAA+TGG 0.563489 7_4:+47830594 Msa1158430:CDS
TCGATGAATCCGGGGCGGAG+AGG 0.565244 7_4:-47830963 None:intergenic
AAGTTAGAGAGAGAAGGGAA+CGG 0.565537 7_4:-47828542 None:intergenic
AACTGTTGTGAAGATGTTGA+AGG 0.573217 7_4:+47828756 Msa1158430:CDS
GATAAACCAATAACTGACAA+TGG 0.575139 7_4:+47830744 Msa1158430:CDS
TCTAGACTCGCTGCGAACAA+AGG 0.575607 7_4:+47830936 Msa1158430:CDS
AAAGGAACCCCTCTCCGCCC+CGG 0.576993 7_4:+47830954 Msa1158430:CDS
GAAAGATCCATCGGAAACTT+CGG 0.579080 7_4:-47831080 None:intergenic
ATCACCGTCTTATTCATCGT+GGG 0.579244 7_4:+47828457 Msa1158430:five_prime_UTR
GAAGTAGGATGGCCAACAGA+AGG 0.581640 7_4:+47830861 Msa1158430:CDS
GGAAGGGCTTGGTGTAAACT+GGG 0.581663 7_4:+47828702 Msa1158430:CDS
TGGTCTTGGTGACACCGTAA+AGG 0.581918 7_4:+47830506 Msa1158430:CDS
AATGTTCTGCAGTGCAGGAA+AGG 0.584113 7_4:-47830463 None:intergenic
CAATGGTCTCATGACTCAGA+TGG 0.589085 7_4:+47830611 Msa1158430:CDS
GAAATTTGCATCAAAGACGT+TGG 0.589177 7_4:-47830778 None:intergenic
AGGTAACTTTGAGAGACACT+GGG 0.591795 7_4:+47831034 Msa1158430:CDS
TTGGAGATTGTACTGCACTT+GGG 0.593832 7_4:+47831234 Msa1158430:CDS
GTTCCCGTAGAGACTTAAGA+AGG 0.603438 7_4:-47830682 None:intergenic
AACAACAAAGCAGCAAATGA+GGG 0.604408 7_4:-47831452 None:intergenic
AGATGTCTATATGTCTCCGC+AGG 0.611737 7_4:+47830548 Msa1158430:CDS
ACTCGTTATAACTTTGATGG+CGG 0.617236 7_4:+47828937 Msa1158430:CDS
GGGTTAAACATGCACCACAT+TGG 0.618943 7_4:-47831158 None:intergenic
TATCACCGTCTTATTCATCG+TGG 0.622354 7_4:+47828456 Msa1158430:five_prime_UTR
TTCCCGTAGAGACTTAAGAA+GGG 0.632332 7_4:-47830681 None:intergenic
GTACAATTTCTCAACAAGAA+CGG 0.637978 7_4:+47830633 Msa1158430:CDS
ATCTTCACAACAGTTTCTGG+TGG 0.639053 7_4:-47828748 None:intergenic
AGTTGACCCGAAAGATCCAT+CGG 0.649595 7_4:-47831089 None:intergenic
TCCCGTAGAGACTTAAGAAG+GGG 0.652260 7_4:-47830680 None:intergenic
GGACAATCAAGTTCCATCTG+CGG 0.652978 7_4:+47830569 Msa1158430:CDS
TGGACAACCGAAGTTTCCGA+TGG 0.662375 7_4:+47831073 Msa1158430:CDS
AAACTTCTAGTAGGTGCACA+GGG 0.662815 7_4:+47831119 Msa1158430:CDS
TCTGTTTGGACTCATCGATG+AGG 0.680701 7_4:+47830992 Msa1158430:CDS
TCGCAGCGAGTCTAGAAAGG+AGG 0.683390 7_4:-47830929 None:intergenic
GATAAACTTCGATGAATCCG+GGG 0.689389 7_4:-47830971 None:intergenic
AATGCAATAAGATTCTACAA+TGG 0.690889 7_4:+47830906 Msa1158430:CDS
TGAAATATCTTGATCCAATG+TGG 0.694528 7_4:+47831144 Msa1158430:CDS
CAACTTCGCCTTCTTCGACG+GGG 0.696178 7_4:+47830719 Msa1158430:CDS
GATGGAACTTGATTGTCCTG+CGG 0.701807 7_4:-47830564 None:intergenic
GAAACCCACGATGAATAAGA+CGG 0.707131 7_4:-47828461 None:intergenic
TCTGTCAGAGAGAAACGGAG+AGG 0.734759 7_4:-47828324 None:intergenic
AAACTTCGATGAATCCGGGG+CGG 0.742113 7_4:-47830968 None:intergenic
GAAGGGCTTGGTGTAAACTG+GGG 0.765857 7_4:+47828703 Msa1158430:CDS
GGTAACTTTGAGAGACACTG+GGG 0.786507 7_4:+47831035 Msa1158430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTATTTTTGTC+AGG + chr7_4:47829275-47829294 Msa1158430:intron 10.0%
!!! TTTTATTTTTATTTTTGTCA+GGG + chr7_4:47829276-47829295 Msa1158430:intron 10.0%
!!! ATTTTTATTCGTTGAGTTTA+GGG + chr7_4:47828276-47828295 Msa1158430:five_prime_UTR 20.0%
!!! TTTGTTAGATTTTTGATTCA+TGG + chr7_4:47829241-47829260 Msa1158430:intron 20.0%
!! ATCATTATTATGAACACAAA+GGG - chr7_4:47829332-47829351 None:intergenic 20.0%
!! AATCATTATTATGAACACAA+AGG - chr7_4:47829333-47829352 None:intergenic 20.0%
!! ATAAAAGAATCTAATTCTGA+GGG - chr7_4:47829484-47829503 None:intergenic 20.0%
!! AATAAAAGAATCTAATTCTG+AGG - chr7_4:47829485-47829504 None:intergenic 20.0%
!!! TCAGAATTAGATTCTTTTAT+TGG + chr7_4:47829484-47829503 Msa1158430:intron 20.0%
!!! GATTTTATTGAACATTTTGA+AGG + chr7_4:47830020-47830039 Msa1158430:intron 20.0%
!! TTATTGTAAGCTTTCAAAAA+TGG - chr7_4:47830426-47830445 None:intergenic 20.0%
!! TAAATAAACTAGATATCATC+CGG - chr7_4:47831569-47831588 None:intergenic 20.0%
!! GATTTTTATTCGTTGAGTTT+AGG + chr7_4:47828275-47828294 Msa1158430:five_prime_UTR 25.0%
!!! AAAATGAAGAAGTTTTGTTG+GGG - chr7_4:47828605-47828624 None:intergenic 25.0%
!!! GAAAATGAAGAAGTTTTGTT+GGG - chr7_4:47828606-47828625 None:intergenic 25.0%
!!! TGAAAATGAAGAAGTTTTGT+TGG - chr7_4:47828607-47828626 None:intergenic 25.0%
! ATCTCACAATGGAAAAAAAT+TGG + chr7_4:47828626-47828645 Msa1158430:exon 25.0%
! TTTACAATGTTGTTGATGTT+AGG + chr7_4:47828652-47828671 Msa1158430:CDS 25.0%
! TTGTTGATGTTAGGATTAAT+GGG + chr7_4:47828661-47828680 Msa1158430:CDS 25.0%
!!! ATTTCAGCAAGTTGATTATT+AGG - chr7_4:47828874-47828893 None:intergenic 25.0%
! ATTATAAACGTGCTCAATAT+TGG + chr7_4:47828899-47828918 Msa1158430:CDS 25.0%
! TTATAAACGTGCTCAATATT+GGG + chr7_4:47828900-47828919 Msa1158430:CDS 25.0%
!!! AATTTTTCGAGATTTTGTGT+TGG + chr7_4:47829079-47829098 Msa1158430:intron 25.0%
!!! TAGATTTTTGATTCATGGTT+AGG + chr7_4:47829246-47829265 Msa1158430:intron 25.0%
!!! TGATTATGCATTTTGATTGA+TGG + chr7_4:47829354-47829373 Msa1158430:intron 25.0%
!!! AGTTGTTCTTGTTTTAATCA+AGG + chr7_4:47829436-47829455 Msa1158430:intron 25.0%
!! TTAGATTCTTTTATTGGTGT+TGG + chr7_4:47829490-47829509 Msa1158430:intron 25.0%
!!! TTCCTTGTAGTAACTTTTTT+CGG + chr7_4:47829524-47829543 Msa1158430:intron 25.0%
! AGAACAAATACATTATACCT+CGG - chr7_4:47829552-47829571 None:intergenic 25.0%
! ATGTGCATATATCATATTCT+TGG + chr7_4:47829650-47829669 Msa1158430:intron 25.0%
!! TTTTCCTTCTGTATTATAGT+TGG + chr7_4:47829811-47829830 Msa1158430:intron 25.0%
!! GTCTGTTCAAACAATTTTAA+AGG + chr7_4:47829844-47829863 Msa1158430:intron 25.0%
!!! CAATTTTAAAGGAGTTAGAT+TGG + chr7_4:47829855-47829874 Msa1158430:intron 25.0%
!! TATTTTTCACAATCAGCAAT+TGG - chr7_4:47829932-47829951 None:intergenic 25.0%
! TTTGACAACACTAGATTTAA+TGG + chr7_4:47829997-47830016 Msa1158430:intron 25.0%
! TTGACAACACTAGATTTAAT+GGG + chr7_4:47829998-47830017 Msa1158430:intron 25.0%
! TGGTGTTTAATAATAAGAAG+CGG - chr7_4:47830051-47830070 None:intergenic 25.0%
! ATTCATCAAAGCTTAAAATG+TGG - chr7_4:47830071-47830090 None:intergenic 25.0%
! GCACAAATTCACATTAAAAT+CGG - chr7_4:47830358-47830377 None:intergenic 25.0%
! AATGCAATAAGATTCTACAA+TGG + chr7_4:47830906-47830925 Msa1158430:CDS 25.0%
CAATCAAACAAACCAATTAG+AGG + chr7_4:47828349-47828368 Msa1158430:five_prime_UTR 30.0%
! GTTTCTTTTTGACCTCTAAT+TGG - chr7_4:47828364-47828383 None:intergenic 30.0%
! TCTTCATTTTCATCTCACAA+TGG + chr7_4:47828615-47828634 Msa1158430:exon 30.0%
GTTGTTGATGTTAGGATTAA+TGG + chr7_4:47828660-47828679 Msa1158430:CDS 30.0%
!!! TAGGATTAATGGGTTGTTTT+TGG + chr7_4:47828671-47828690 Msa1158430:CDS 30.0%
TGAAGATGTTGAAGGATAAT+GGG + chr7_4:47828764-47828783 Msa1158430:CDS 30.0%
GTTACTCGTTATAACTTTGA+TGG + chr7_4:47828934-47828953 Msa1158430:CDS 30.0%
! GAGAATCATTTTACCATTCT+AGG + chr7_4:47829572-47829591 Msa1158430:intron 30.0%
GCATATATCATATTCTTGGA+AGG + chr7_4:47829654-47829673 Msa1158430:intron 30.0%
TGATTGAGAGTTCATATAAC+AGG + chr7_4:47829727-47829746 Msa1158430:intron 30.0%
! TAACAGGAAATTTTGCATCA+AGG + chr7_4:47829743-47829762 Msa1158430:intron 30.0%
TCAACCAACTATAATACAGA+AGG - chr7_4:47829818-47829837 None:intergenic 30.0%
! GCTTGTAGAGATTTTATTGA+TGG + chr7_4:47829879-47829898 Msa1158430:intron 30.0%
AAATCTAGTGTTGTCAAAAG+CGG - chr7_4:47829995-47830014 None:intergenic 30.0%
! TAGCGAATAATTTGTAATGC+TGG + chr7_4:47830176-47830195 Msa1158430:intron 30.0%
!! AAGATGGCATTGATGAATTT+GGG - chr7_4:47830275-47830294 None:intergenic 30.0%
!! AAAGATGGCATTGATGAATT+TGG - chr7_4:47830276-47830295 None:intergenic 30.0%
CATTAAAATCGGTCGAAATT+CGG - chr7_4:47830347-47830366 None:intergenic 30.0%
ATATAGACATCTGCGTTTAA+GGG - chr7_4:47830540-47830559 None:intergenic 30.0%
GTACAATTTCTCAACAAGAA+CGG + chr7_4:47830633-47830652 Msa1158430:CDS 30.0%
GATAAACCAATAACTGACAA+TGG + chr7_4:47830744-47830763 Msa1158430:CDS 30.0%
TGATGCAAATTTCGATACAT+TGG + chr7_4:47830788-47830807 Msa1158430:CDS 30.0%
TTCATCGAAGTTTATCTGTT+TGG + chr7_4:47830978-47830997 Msa1158430:CDS 30.0%
CTTCAAAACAAACTTCTAGT+AGG + chr7_4:47831110-47831129 Msa1158430:CDS 30.0%
TGAAATATCTTGATCCAATG+TGG + chr7_4:47831144-47831163 Msa1158430:CDS 30.0%
ATTAACTTTGCTTGCACATT+TGG + chr7_4:47831215-47831234 Msa1158430:CDS 30.0%
!!! TGCTTTTTCTGTGATTCTAT+TGG + chr7_4:47831478-47831497 Msa1158430:CDS 30.0%
GGTTTCAACATTTATTTGAC+CGG + chr7_4:47831547-47831566 Msa1158430:three_prime_UTR 30.0%
!! TTGTTTCTGTCAGAGAGAAA+CGG - chr7_4:47828332-47828351 None:intergenic 35.0%
TTGTGAAGTTAGAGAGAGAA+GGG - chr7_4:47828550-47828569 None:intergenic 35.0%
TTTGTGAAGTTAGAGAGAGA+AGG - chr7_4:47828551-47828570 None:intergenic 35.0%
!!! TGTTTTTGGTGTTATGTGGA+AGG + chr7_4:47828685-47828704 Msa1158430:CDS 35.0%
!!! GTTTTTGGTGTTATGTGGAA+GGG + chr7_4:47828686-47828705 Msa1158430:CDS 35.0%
AACATCTTCACAACAGTTTC+TGG - chr7_4:47828754-47828773 None:intergenic 35.0%
AACTGTTGTGAAGATGTTGA+AGG + chr7_4:47828756-47828775 Msa1158430:CDS 35.0%
GTGAAGATGTTGAAGGATAA+TGG + chr7_4:47828763-47828782 Msa1158430:CDS 35.0%
TGATACTACAATGACTGCTT+TGG + chr7_4:47828816-47828835 Msa1158430:CDS 35.0%
!! TGGTAGTGGAATTGAAGTTA+TGG + chr7_4:47828840-47828859 Msa1158430:CDS 35.0%
ACTCGTTATAACTTTGATGG+CGG + chr7_4:47828937-47828956 Msa1158430:CDS 35.0%
TGAAGCAAGCACATTATACA+AGG - chr7_4:47829123-47829142 None:intergenic 35.0%
GTATAATGTGCTTGCTTCAT+TGG + chr7_4:47829124-47829143 Msa1158430:intron 35.0%
!!! TTTTGATTGATGGCGAGTTT+TGG + chr7_4:47829364-47829383 Msa1158430:intron 35.0%
!!! TTTGATTGATGGCGAGTTTT+GGG + chr7_4:47829365-47829384 Msa1158430:intron 35.0%
! ATCAAGGAAGCTTTATGTAC+TGG + chr7_4:47829452-47829471 Msa1158430:intron 35.0%
! TCAAGGAAGCTTTATGTACT+GGG + chr7_4:47829453-47829472 Msa1158430:intron 35.0%
CACCGAAAAAAGTTACTACA+AGG - chr7_4:47829529-47829548 None:intergenic 35.0%
!! TAGGAGTTGATTGCAGTTTT+AGG + chr7_4:47829591-47829610 Msa1158430:intron 35.0%
!! AGGAGTTGATTGCAGTTTTA+GGG + chr7_4:47829592-47829611 Msa1158430:intron 35.0%
! TTTTTGCATGTGTGCGTATA+TGG + chr7_4:47829688-47829707 Msa1158430:intron 35.0%
! TTTTGCATGTGTGCGTATAT+GGG + chr7_4:47829689-47829708 Msa1158430:intron 35.0%
CCAATCCAATGACAAAAACA+AGG - chr7_4:47830220-47830239 None:intergenic 35.0%
!!! CCTTGTTTTTGTCATTGGAT+TGG + chr7_4:47830217-47830236 Msa1158430:intron 35.0%
!! GGATTGGTCAAACACTAAAA+TGG + chr7_4:47830233-47830252 Msa1158430:intron 35.0%
TTGGTCAAACACTAAAATGG+TGG + chr7_4:47830236-47830255 Msa1158430:intron 35.0%
!! AGATGGCATTGATGAATTTG+GGG - chr7_4:47830274-47830293 None:intergenic 35.0%
TCATCAATGCCATCTTTAGT+TGG + chr7_4:47830279-47830298 Msa1158430:intron 35.0%
TACATATCTGCGGAAAAAGA+TGG - chr7_4:47830388-47830407 None:intergenic 35.0%
CATATAGACATCTGCGTTTA+AGG - chr7_4:47830541-47830560 None:intergenic 35.0%
AGTCATGAGACCATTGATAT+CGG - chr7_4:47830607-47830626 None:intergenic 35.0%
GGGTAAATGTTGACAGTAAA+TGG - chr7_4:47830663-47830682 None:intergenic 35.0%
TGGATTCCATTGTCAGTTAT+TGG - chr7_4:47830753-47830772 None:intergenic 35.0%
CATCAAAGACGTTGGTATAT+TGG - chr7_4:47830773-47830792 None:intergenic 35.0%
GAAATTTGCATCAAAGACGT+TGG - chr7_4:47830781-47830800 None:intergenic 35.0%
GTAGAATCTTATTGCATTGC+CGG - chr7_4:47830904-47830923 None:intergenic 35.0%
AGATAAACTTCGATGAATCC+GGG - chr7_4:47830975-47830994 None:intergenic 35.0%
CAGATAAACTTCGATGAATC+CGG - chr7_4:47830976-47830995 None:intergenic 35.0%
TGGGGAATATTTCGATATGA+TGG + chr7_4:47831053-47831072 Msa1158430:CDS 35.0%
AAGCATTTCCATTAGCATCA+AGG - chr7_4:47831280-47831299 None:intergenic 35.0%
GTTGAAATGTTGTCTGTAGT+AGG - chr7_4:47831377-47831396 None:intergenic 35.0%
ATCAAAGAAGATGCTGAAGA+AGG - chr7_4:47831431-47831450 None:intergenic 35.0%
AACAACAAAGCAGCAAATGA+GGG - chr7_4:47831455-47831474 None:intergenic 35.0%
AAACAACAAAGCAGCAAATG+AGG - chr7_4:47831456-47831475 None:intergenic 35.0%
! GAATTTTGCAGATTGAGAGT+TGG + chr7_4:47831596-47831615 Msa1158430:three_prime_UTR 35.0%
! GACGGTGATAGTGATGAAAT+GGG - chr7_4:47828446-47828465 None:intergenic 40.0%
! AGACGGTGATAGTGATGAAA+TGG - chr7_4:47828447-47828466 None:intergenic 40.0%
! TATCACCGTCTTATTCATCG+TGG + chr7_4:47828456-47828475 Msa1158430:five_prime_UTR 40.0%
! ATCACCGTCTTATTCATCGT+GGG + chr7_4:47828457-47828476 Msa1158430:five_prime_UTR 40.0%
GAAACCCACGATGAATAAGA+CGG - chr7_4:47828464-47828483 None:intergenic 40.0%
!!! AGTGGGTTTTGGAGATTAAG+CGG - chr7_4:47828514-47828533 None:intergenic 40.0%
AAGTTAGAGAGAGAAGGGAA+CGG - chr7_4:47828545-47828564 None:intergenic 40.0%
!!! GGGTTGTTTTTGGTGTTATG+TGG + chr7_4:47828681-47828700 Msa1158430:CDS 40.0%
! ATCTTCACAACAGTTTCTGG+TGG - chr7_4:47828751-47828770 None:intergenic 40.0%
AACGTGCTCAATATTGGGTT+AGG + chr7_4:47828905-47828924 Msa1158430:CDS 40.0%
ACTGCAATCAACTCCTAGAA+TGG - chr7_4:47829588-47829607 None:intergenic 40.0%
!! GGAGTTGATTGCAGTTTTAG+GGG + chr7_4:47829593-47829612 Msa1158430:intron 40.0%
!!! CAGTTTTAGGGGAAGAGAAA+TGG + chr7_4:47829604-47829623 Msa1158430:intron 40.0%
!!! TGTCGCCTTGTTTTTGTCAT+TGG + chr7_4:47830212-47830231 Msa1158430:intron 40.0%
CTACTGCTTCCAACTAAAGA+TGG - chr7_4:47830291-47830310 None:intergenic 40.0%
! CTTTTTCCGCAGATATGTAG+CGG + chr7_4:47830389-47830408 Msa1158430:intron 40.0%
! TTTTGAATGTTCTGCAGTGC+AGG - chr7_4:47830471-47830490 None:intergenic 40.0%
CAAAATGCCATCAATGAAGC+TGG + chr7_4:47830486-47830505 Msa1158430:CDS 40.0%
!! TAAGGGTACTGTTGCCTTTA+CGG - chr7_4:47830523-47830542 None:intergenic 40.0%
TTCCATCTGCGGGAATATTT+CGG + chr7_4:47830580-47830599 Msa1158430:CDS 40.0%
ATATTTCGGCCCGATATCAA+TGG + chr7_4:47830594-47830613 Msa1158430:CDS 40.0%
GTCATGAGACCATTGATATC+GGG - chr7_4:47830606-47830625 None:intergenic 40.0%
TACCCCTTCTTAAGTCTCTA+CGG + chr7_4:47830678-47830697 Msa1158430:CDS 40.0%
TTCCCGTAGAGACTTAAGAA+GGG - chr7_4:47830684-47830703 None:intergenic 40.0%
GTTTCTGCTCTCAAATCGAT+CGG + chr7_4:47830810-47830829 Msa1158430:CDS 40.0%
CCTACTTCTCCTACCAAAAT+TGG - chr7_4:47830849-47830868 None:intergenic 40.0%
!! CCAATTTTGGTAGGAGAAGT+AGG + chr7_4:47830846-47830865 Msa1158430:CDS 40.0%
! TTTTGGTAGGAGAAGTAGGA+TGG + chr7_4:47830850-47830869 Msa1158430:CDS 40.0%
TCTTATTGCATTGCCGGAAT+TGG - chr7_4:47830898-47830917 None:intergenic 40.0%
GATAAACTTCGATGAATCCG+GGG - chr7_4:47830974-47830993 None:intergenic 40.0%
! AGGTAACTTTGAGAGACACT+GGG + chr7_4:47831034-47831053 Msa1158430:CDS 40.0%
GAAAGATCCATCGGAAACTT+CGG - chr7_4:47831083-47831102 None:intergenic 40.0%
GAAGTTTCCGATGGATCTTT+CGG + chr7_4:47831082-47831101 Msa1158430:CDS 40.0%
AAGTTTCCGATGGATCTTTC+GGG + chr7_4:47831083-47831102 Msa1158430:CDS 40.0%
AAACTTCTAGTAGGTGCACA+GGG + chr7_4:47831119-47831138 Msa1158430:CDS 40.0%
TGCTGAGATCTTTAGCATCA+GGG - chr7_4:47831181-47831200 None:intergenic 40.0%
TTGCTGAGATCTTTAGCATC+AGG - chr7_4:47831182-47831201 None:intergenic 40.0%
TTTGGAGATTGTACTGCACT+TGG + chr7_4:47831233-47831252 Msa1158430:CDS 40.0%
TTGGAGATTGTACTGCACTT+GGG + chr7_4:47831234-47831253 Msa1158430:CDS 40.0%
TGCAACAACCTTGATGCTAA+TGG + chr7_4:47831269-47831288 Msa1158430:CDS 40.0%
! CGTCAAGCATGCAATTTTGA+AGG + chr7_4:47831341-47831360 Msa1158430:CDS 40.0%
ATGCTGAAGAAGGAACTATC+TGG - chr7_4:47831421-47831440 None:intergenic 40.0%
!!! CGGTTTTGGAAAGTGGGTTT+TGG - chr7_4:47828525-47828544 None:intergenic 45.0%
!!! AGGGAACGGTTTTGGAAAGT+GGG - chr7_4:47828531-47828550 None:intergenic 45.0%
!!! AAGGGAACGGTTTTGGAAAG+TGG - chr7_4:47828532-47828551 None:intergenic 45.0%
ACTACAATGACTGCTTTGGC+TGG + chr7_4:47828820-47828839 Msa1158430:CDS 45.0%
!!! GCGAGTTTTGGGATCAAAGA+AGG + chr7_4:47829376-47829395 Msa1158430:intron 45.0%
!!! AGTAACTTTTTTCGGTGCCG+AGG + chr7_4:47829532-47829551 Msa1158430:intron 45.0%
ATAGCAGGGCTACAACATAG+TGG - chr7_4:47829970-47829989 None:intergenic 45.0%
ACTATGTTGTAGCCCTGCTA+TGG + chr7_4:47829969-47829988 Msa1158430:intron 45.0%
AAATCGGTCGAAATTCGGCA+AGG - chr7_4:47830342-47830361 None:intergenic 45.0%
AATGTTCTGCAGTGCAGGAA+AGG - chr7_4:47830466-47830485 None:intergenic 45.0%
ACCAAGACCAGCTTCATTGA+TGG - chr7_4:47830496-47830515 None:intergenic 45.0%
AGATGTCTATATGTCTCCGC+AGG + chr7_4:47830548-47830567 Msa1158430:CDS 45.0%
GATGGAACTTGATTGTCCTG+CGG - chr7_4:47830567-47830586 None:intergenic 45.0%
GGACAATCAAGTTCCATCTG+CGG + chr7_4:47830569-47830588 Msa1158430:CDS 45.0%
GACAATCAAGTTCCATCTGC+GGG + chr7_4:47830570-47830589 Msa1158430:CDS 45.0%
CAATGGTCTCATGACTCAGA+TGG + chr7_4:47830611-47830630 Msa1158430:CDS 45.0%
ACCCCTTCTTAAGTCTCTAC+GGG + chr7_4:47830679-47830698 Msa1158430:CDS 45.0%
TCCCGTAGAGACTTAAGAAG+GGG - chr7_4:47830683-47830702 None:intergenic 45.0%
GTTCCCGTAGAGACTTAAGA+AGG - chr7_4:47830685-47830704 None:intergenic 45.0%
CGAAGAAGGCGAAGTTGAAT+GGG - chr7_4:47830716-47830735 None:intergenic 45.0%
TCGAAGAAGGCGAAGTTGAA+TGG - chr7_4:47830717-47830736 None:intergenic 45.0%
TTCAACTTCGCCTTCTTCGA+CGG + chr7_4:47830717-47830736 Msa1158430:CDS 45.0%
TTTATCTACCCCGTCGAAGA+AGG - chr7_4:47830730-47830749 None:intergenic 45.0%
! GCTCTCAAATCGATCGGTTT+CGG + chr7_4:47830816-47830835 Msa1158430:CDS 45.0%
GCATTCTTGTCACCTTCTGT+TGG - chr7_4:47830876-47830895 None:intergenic 45.0%
GGTGACAAGAATGCCAATTC+CGG + chr7_4:47830882-47830901 Msa1158430:CDS 45.0%
TCTGTTTGGACTCATCGATG+AGG + chr7_4:47830992-47831011 Msa1158430:CDS 45.0%
CAGTGTCTCTCAAAGTTACC+TGG - chr7_4:47831035-47831054 None:intergenic 45.0%
! CAGGTAACTTTGAGAGACAC+TGG + chr7_4:47831033-47831052 Msa1158430:CDS 45.0%
! GGTAACTTTGAGAGACACTG+GGG + chr7_4:47831035-47831054 Msa1158430:CDS 45.0%
AGTTGACCCGAAAGATCCAT+CGG - chr7_4:47831092-47831111 None:intergenic 45.0%
CAAACTTCTAGTAGGTGCAC+AGG + chr7_4:47831118-47831137 Msa1158430:CDS 45.0%
GGGTTAAACATGCACCACAT+TGG - chr7_4:47831161-47831180 None:intergenic 45.0%
GATTGTACTGCACTTGGGTA+TGG + chr7_4:47831239-47831258 Msa1158430:CDS 45.0%
!!! TGATATAATTTTTTTATTTA+AGG + chr7_4:47831526-47831545 Msa1158430:three_prime_UTR 5.0%
AACGGAGAGGCTAAGGAGTA+AGG - chr7_4:47828314-47828333 None:intergenic 50.0%
AGAGAGAAACGGAGAGGCTA+AGG - chr7_4:47828321-47828340 None:intergenic 50.0%
TCTGTCAGAGAGAAACGGAG+AGG - chr7_4:47828327-47828346 None:intergenic 50.0%
! GAGAGAGAAGGGAACGGTTT+TGG - chr7_4:47828539-47828558 None:intergenic 50.0%
!! TGGTGTTATGTGGAAGGGCT+TGG + chr7_4:47828691-47828710 Msa1158430:CDS 50.0%
!! TGGAAGGGCTTGGTGTAAAC+TGG + chr7_4:47828701-47828720 Msa1158430:CDS 50.0%
!! GGAAGGGCTTGGTGTAAACT+GGG + chr7_4:47828702-47828721 Msa1158430:CDS 50.0%
!! GAAGGGCTTGGTGTAAACTG+GGG + chr7_4:47828703-47828722 Msa1158430:CDS 50.0%
ATGACTGCTTTGGCTGGTAG+TGG + chr7_4:47828826-47828845 Msa1158430:CDS 50.0%
TGTCAAAAGCGGCCATAGCA+GGG - chr7_4:47829984-47830003 None:intergenic 50.0%
TTGTCAAAAGCGGCCATAGC+AGG - chr7_4:47829985-47830004 None:intergenic 50.0%
TTCCGCAGATATGTAGCGGT+TGG + chr7_4:47830393-47830412 Msa1158430:intron 50.0%
TCCGCAGATATGTAGCGGTT+GGG + chr7_4:47830394-47830413 Msa1158430:intron 50.0%
TCCCAACCGCTACATATCTG+CGG - chr7_4:47830398-47830417 None:intergenic 50.0%
! GCCATCAATGAAGCTGGTCT+TGG + chr7_4:47830492-47830511 Msa1158430:CDS 50.0%
! TGGTCTTGGTGACACCGTAA+AGG + chr7_4:47830506-47830525 Msa1158430:CDS 50.0%
TCAACTTCGCCTTCTTCGAC+GGG + chr7_4:47830718-47830737 Msa1158430:CDS 50.0%
! TTTCGGCGACACGCCAATTT+TGG + chr7_4:47830833-47830852 Msa1158430:CDS 50.0%
GAAGTAGGATGGCCAACAGA+AGG + chr7_4:47830861-47830880 Msa1158430:CDS 50.0%
TGTTCGCAGCGAGTCTAGAA+AGG - chr7_4:47830935-47830954 None:intergenic 50.0%
TCTAGACTCGCTGCGAACAA+AGG + chr7_4:47830936-47830955 Msa1158430:CDS 50.0%
AAACTTCGATGAATCCGGGG+CGG - chr7_4:47830971-47830990 None:intergenic 50.0%
TGGACAACCGAAGTTTCCGA+TGG + chr7_4:47831073-47831092 Msa1158430:CDS 50.0%
GTACTACCAGACGCAGAATC+AGG + chr7_4:47831316-47831335 Msa1158430:CDS 50.0%
GGCCGAAATATTCCCGCAGA+TGG - chr7_4:47830585-47830604 None:intergenic 55.0%
CAACTTCGCCTTCTTCGACG+GGG + chr7_4:47830719-47830738 Msa1158430:CDS 55.0%
!! GGCGACACGCCAATTTTGGT+AGG + chr7_4:47830837-47830856 Msa1158430:CDS 55.0%
TCGCAGCGAGTCTAGAAAGG+AGG - chr7_4:47830932-47830951 None:intergenic 55.0%
GACGATCCTGATTCTGCGTC+TGG - chr7_4:47831325-47831344 None:intergenic 55.0%
!! GACGCGAAGAGCATTGCTCC+AGG + chr7_4:47831014-47831033 Msa1158430:CDS 60.0%
AAAGGAACCCCTCTCCGCCC+CGG + chr7_4:47830954-47830973 Msa1158430:CDS 65.0%
GATGAATCCGGGGCGGAGAG+GGG - chr7_4:47830964-47830983 None:intergenic 65.0%
CGATGAATCCGGGGCGGAGA+GGG - chr7_4:47830965-47830984 None:intergenic 65.0%
TCGATGAATCCGGGGCGGAG+AGG - chr7_4:47830966-47830985 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 47828227 47831628 47828227 ID=Msa1158430;Name=Msa1158430
chr7_4 mRNA 47828227 47831628 47828227 ID=Msa1158430-mRNA-1;Parent=Msa1158430;Name=Msa1158430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=407|1|1|1|1|1|2|123|480
chr7_4 exon 47828227 47828971 47828227 ID=Msa1158430-mRNA-1:exon:12781;Parent=Msa1158430-mRNA-1
chr7_4 exon 47830401 47831628 47830401 ID=Msa1158430-mRNA-1:exon:12782;Parent=Msa1158430-mRNA-1
chr7_4 five_prime_UTR 47828227 47828633 47828227 ID=Msa1158430-mRNA-1:five_prime_utr;Parent=Msa1158430-mRNA-1
chr7_4 CDS 47828634 47828971 47828634 ID=Msa1158430-mRNA-1:cds;Parent=Msa1158430-mRNA-1
chr7_4 CDS 47830401 47831505 47830401 ID=Msa1158430-mRNA-1:cds;Parent=Msa1158430-mRNA-1
chr7_4 three_prime_UTR 47831506 47831628 47831506 ID=Msa1158430-mRNA-1:three_prime_utr;Parent=Msa1158430-mRNA-1
Gene Sequence

>Msa1158430

ATGGAAAAAAATTGGATTTTTACAATGTTGTTGATGTTAGGATTAATGGGTTGTTTTTGGTGTTATGTGGAAGGGCTTGGTGTAAACTGGGGCACACAAGCAACACACAAGTTACCACCAGAAACTGTTGTGAAGATGTTGAAGGATAATGGGATTCAAAAAGTTAAGCTTTTTGATGCAGATGATACTACAATGACTGCTTTGGCTGGTAGTGGAATTGAAGTTATGGTTGCTATTCCTAATAATCAACTTGCTGAAATGAATGATTATAAACGTGCTCAATATTGGGTTAGGAAGAATGTTACTCGTTATAACTTTGATGGCGGTGTTAAGATCAAATATGTAGCGGTTGGGAATGAGCCATTTTTGAAAGCTTACAATAATTCATTCTTGAACATCACCTTTCCTGCACTGCAGAACATTCAAAATGCCATCAATGAAGCTGGTCTTGGTGACACCGTAAAGGCAACAGTACCCTTAAACGCAGATGTCTATATGTCTCCGCAGGACAATCAAGTTCCATCTGCGGGAATATTTCGGCCCGATATCAATGGTCTCATGACTCAGATGGTACAATTTCTCAACAAGAACGGAGCACCATTTACTGTCAACATTTACCCCTTCTTAAGTCTCTACGGGAACGACGATTTCCCATTCAACTTCGCCTTCTTCGACGGGGTAGATAAACCAATAACTGACAATGGAATCCAATATACCAACGTCTTTGATGCAAATTTCGATACATTGGTTTCTGCTCTCAAATCGATCGGTTTCGGCGACACGCCAATTTTGGTAGGAGAAGTAGGATGGCCAACAGAAGGTGACAAGAATGCCAATTCCGGCAATGCAATAAGATTCTACAATGGCCTCCTTTCTAGACTCGCTGCGAACAAAGGAACCCCTCTCCGCCCCGGATTCATCGAAGTTTATCTGTTTGGACTCATCGATGAGGACGCGAAGAGCATTGCTCCAGGTAACTTTGAGAGACACTGGGGAATATTTCGATATGATGGACAACCGAAGTTTCCGATGGATCTTTCGGGTCAACTTCAAAACAAACTTCTAGTAGGTGCACAGGGTGTGAAATATCTTGATCCAATGTGGTGCATGTTTAACCCTGATGCTAAAGATCTCAGCAAACTTGCTGATAACATTAACTTTGCTTGCACATTTGGAGATTGTACTGCACTTGGGTATGGATCTTCTTGCAACAACCTTGATGCTAATGGAAATGCTTCTTATGCATTCAACATGTACTACCAGACGCAGAATCAGGATCGTCAAGCATGCAATTTTGAAGGTTTAGCTAAGCCTACTACAGACAACATTTCAACACTTACTTGTAATTTTATCATCCAGATAGTTCCTTCTTCAGCATCTTCTTTGATGCCCTCATTTGCTGCTTTGTTGTTTATTGCTTTTTCTGTGATTCTATTGGCTTAG
Protein sequence

>Msa1158430

MEKNWIFTMLLMLGLMGCFWCYVEGLGVNWGTQATHKLPPETVVKMLKDNGIQKVKLFDADDTTMTALAGSGIEVMVAIPNNQLAEMNDYKRAQYWVRKNVTRYNFDGGVKIKYVAVGNEPFLKAYNNSFLNITFPALQNIQNAINEAGLGDTVKATVPLNADVYMSPQDNQVPSAGIFRPDINGLMTQMVQFLNKNGAPFTVNIYPFLSLYGNDDFPFNFAFFDGVDKPITDNGIQYTNVFDANFDTLVSALKSIGFGDTPILVGEVGWPTEGDKNANSGNAIRFYNGLLSRLAANKGTPLRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQLQNKLLVGAQGVKYLDPMWCMFNPDAKDLSKLADNINFACTFGDCTALGYGSSCNNLDANGNASYAFNMYYQTQNQDRQACNFEGLAKPTTDNISTLTCNFIIQIVPSSASSLMPSFAALLFIAFSVILLA*