AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1070610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070610 MtrunA17_Chr7g0253091 99.167 480 4 0 1 480 1 480 0.0 978
Msa1070610 MtrunA17_Chr6g0461601 77.386 482 106 3 1 479 1 482 0.0 734
Msa1070610 MtrunA17_Chr4g0062771 56.118 474 199 3 6 474 15 484 0.0 545
Msa1070610 MtrunA17_Chr2g0306311 52.807 481 200 3 26 479 30 510 4.55e-178 509
Msa1070610 MtrunA17_Chr8g0383311 54.503 433 194 2 23 454 40 470 1.09e-174 500
Msa1070610 MtrunA17_Chr1g0148391 53.862 479 212 5 1 474 1 475 1.08e-173 496
Msa1070610 MtrunA17_Chr3g0138741 54.352 471 204 5 9 471 14 481 4.55e-170 488
Msa1070610 MtrunA17_Chr3g0129341 50.105 475 229 7 9 479 15 485 1.59e-157 456
Msa1070610 MtrunA17_Chr4g0069801 51.562 448 208 5 25 468 27 469 1.36e-154 448
Msa1070610 MtrunA17_Chr2g0290821 50.345 435 208 5 24 455 26 455 5.33e-154 447
Msa1070610 MtrunA17_Chr4g0076581 48.319 476 232 6 10 477 17 486 2.20e-153 445
Msa1070610 MtrunA17_Chr3g0105981 45.036 413 219 7 24 435 25 430 3.53e-115 345
Msa1070610 MtrunA17_Chr3g0144531 33.941 439 264 18 26 450 28 454 1.48e-61 207
Msa1070610 MtrunA17_Chr1g0161011 32.648 438 266 16 26 450 24 445 1.66e-60 206
Msa1070610 MtrunA17_Chr4g0034901 32.265 468 276 19 8 450 8 459 3.55e-58 199
Msa1070610 MtrunA17_Chr7g0223961 34.529 446 257 20 23 450 20 448 6.58e-58 197
Msa1070610 MtrunA17_Chr5g0439251 32.096 458 250 18 26 444 25 460 2.79e-56 194
Msa1070610 MtrunA17_Chr8g0389741 29.577 426 278 13 20 434 22 436 6.63e-56 194
Msa1070610 MtrunA17_Chr6g0487261 31.087 460 280 18 5 442 7 451 1.05e-55 193
Msa1070610 MtrunA17_Chr4g0038941 34.663 326 192 9 24 346 50 357 1.81e-55 189
Msa1070610 MtrunA17_Chr4g0038981 34.125 337 203 9 9 342 4 324 3.43e-55 187
Msa1070610 MtrunA17_Chr4g0039011 35.077 325 193 9 26 348 42 350 6.58e-54 185
Msa1070610 MtrunA17_Chr1g0189111 34.731 334 197 11 23 347 28 349 1.95e-53 185
Msa1070610 MtrunA17_Chr4g0038961 33.234 337 206 9 9 342 4 324 2.16e-53 182
Msa1070610 MtrunA17_Chr4g0038971 31.871 342 214 9 9 347 4 329 7.47e-53 181
Msa1070610 MtrunA17_Chr4g0046311 30.543 442 271 19 26 444 23 451 8.72e-53 184
Msa1070610 MtrunA17_Chr3g0110371 30.023 443 271 16 26 450 24 445 1.22e-52 185
Msa1070610 MtrunA17_Chr1g0177171 30.258 466 271 19 26 450 38 490 1.36e-52 184
Msa1070610 MtrunA17_Chr2g0294601 31.818 352 226 7 10 357 41 382 4.20e-52 181
Msa1070610 MtrunA17_Chr1g0146831 35.736 333 186 14 23 340 28 347 1.49e-51 179
Msa1070610 MtrunA17_Chr4g0003281 33.333 354 215 12 5 348 19 361 2.79e-51 179
Msa1070610 MtrunA17_Chr4g0043511 28.992 476 290 16 19 464 55 512 3.41e-50 179
Msa1070610 MtrunA17_Chr2g0294591 33.131 329 204 7 26 350 30 346 1.52e-49 173
Msa1070610 MtrunA17_Chr5g0434591 29.452 438 280 14 26 450 23 444 2.62e-49 176
Msa1070610 MtrunA17_Chr8g0378621 29.299 471 284 19 3 450 4 448 3.86e-49 175
Msa1070610 MtrunA17_Chr4g0064021 32.530 332 203 11 27 348 27 347 1.00e-48 172
Msa1070610 MtrunA17_Chr3g0119541 34.969 326 187 12 24 337 24 336 1.80e-48 170
Msa1070610 MtrunA17_Chr7g0250301 32.407 324 199 11 26 344 8 316 2.11e-48 169
Msa1070610 MtrunA17_Chr8g0339191 29.705 441 281 17 27 450 30 458 3.92e-48 172
Msa1070610 MtrunA17_Chr3g0121271 28.602 465 289 19 3 448 4 444 5.98e-48 172
Msa1070610 MtrunA17_Chr4g0075031 29.318 440 278 15 26 450 45 466 6.90e-48 172
Msa1070610 MtrunA17_Chr4g0039071 32.121 330 207 9 24 350 23 338 2.00e-47 168
Msa1070610 MtrunA17_Chr4g0043851 31.933 357 222 12 1 348 8 352 7.77e-47 167
Msa1070610 MtrunA17_Chr4g0026321 31.373 357 221 15 25 370 28 371 2.07e-46 165
Msa1070610 MtrunA17_Chr4g0039021 33.444 302 182 10 46 342 1 288 8.94e-45 158
Msa1070610 MtrunA17_Chr2g0321511 31.161 353 220 14 8 350 10 349 1.54e-44 160
Msa1070610 MtrunA17_Chr1g0174261 33.219 292 179 9 55 342 1 280 6.10e-44 158
Msa1070610 MtrunA17_Chr1g0155001 32.036 334 207 11 26 349 24 347 5.18e-43 157
Msa1070610 MtrunA17_Chr2g0285901 32.710 321 195 11 26 337 24 332 2.59e-42 154
Msa1070610 MtrunA17_Chr7g0234821 27.088 443 293 18 27 450 27 458 5.29e-41 152
Msa1070610 MtrunA17_Chr7g0250321 31.834 289 180 9 3 288 7 281 6.84e-38 140
Msa1070610 MtrunA17_Chr5g0436361 27.778 324 212 13 43 357 54 364 1.55e-25 107
Msa1070610 MtrunA17_Chr2g0294581 36.567 134 82 2 26 158 76 207 3.24e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1070610 AT1G64760.1 75.737 441 106 1 15 455 14 453 0.0 689
Msa1070610 AT1G64760.2 75.737 441 106 1 15 455 14 453 0.0 689
Msa1070610 AT2G19440.2 74.222 450 113 2 6 455 3 449 0.0 689
Msa1070610 AT2G19440.1 74.222 450 113 2 6 455 3 449 0.0 689
Msa1070610 AT3G04010.1 68.151 449 141 2 23 470 30 477 0.0 631
Msa1070610 AT5G18220.1 66.245 474 148 5 9 477 13 479 0.0 627
Msa1070610 AT3G24330.1 52.101 476 225 3 6 479 19 493 9.31e-176 503
Msa1070610 AT5G64790.1 55.727 454 191 3 6 458 15 459 2.73e-174 499
Msa1070610 AT4G31140.1 53.209 483 212 7 6 479 6 483 4.44e-173 496
Msa1070610 AT5G58090.1 53.275 458 207 5 20 473 16 470 1.16e-167 481
Msa1070610 AT5G20870.1 52.489 442 195 6 23 454 27 463 5.95e-150 437
Msa1070610 AT4G17180.1 48.864 440 212 5 24 461 23 451 1.31e-146 428
Msa1070610 AT5G58480.1 44.295 447 237 7 23 466 23 460 3.99e-124 370
Msa1070610 AT5G55180.1 33.182 440 269 15 26 450 27 456 1.68e-66 221
Msa1070610 AT5G55180.2 33.803 426 257 15 26 436 27 442 2.78e-66 221
Msa1070610 AT2G16230.1 33.790 438 264 16 26 450 25 449 4.69e-65 218
Msa1070610 AT2G05790.1 33.333 462 253 21 26 450 25 468 7.69e-64 214
Msa1070610 AT3G55430.1 34.240 441 260 17 23 450 26 449 3.10e-63 212
Msa1070610 AT2G39640.1 32.522 452 269 17 9 448 13 440 3.32e-60 207
Msa1070610 AT4G26830.1 31.579 456 284 17 10 450 9 451 1.10e-59 203
Msa1070610 AT4G26830.2 32.273 440 270 17 26 450 29 455 9.41e-59 201
Msa1070610 AT2G01630.1 31.111 450 274 17 26 461 23 450 6.20e-58 199
Msa1070610 AT2G01630.3 30.716 433 269 16 26 444 23 438 1.45e-56 194
Msa1070610 AT3G13560.4 33.108 444 267 15 20 450 20 446 1.67e-56 196
Msa1070610 AT3G13560.1 33.108 444 267 15 20 450 20 446 1.67e-56 196
Msa1070610 AT3G13560.2 33.108 444 267 15 20 450 20 446 1.67e-56 196
Msa1070610 AT3G13560.5 33.108 444 267 15 20 450 20 446 1.67e-56 196
Msa1070610 AT3G13560.3 33.108 444 267 15 20 450 20 446 1.67e-56 196
Msa1070610 AT4G34480.1 33.030 439 263 17 26 450 26 447 2.10e-56 195
Msa1070610 AT3G07320.1 32.200 441 271 18 27 450 26 455 3.81e-56 194
Msa1070610 AT1G66250.1 30.543 442 269 15 26 450 32 452 1.05e-55 194
Msa1070610 AT5G24318.1 29.149 470 286 19 7 450 7 455 1.60e-54 189
Msa1070610 AT5G24318.2 29.348 460 278 19 7 440 7 445 4.58e-54 188
Msa1070610 AT1G11820.2 30.023 443 271 16 26 450 44 465 1.44e-53 188
Msa1070610 AT4G14080.1 31.236 445 273 20 26 450 42 473 1.91e-53 187
Msa1070610 AT4G16260.1 32.722 327 206 7 24 348 22 336 2.04e-53 183
Msa1070610 AT5G56590.1 29.075 454 281 17 20 451 20 454 1.89e-52 185
Msa1070610 AT1G11820.3 29.977 437 267 16 26 444 44 459 2.40e-52 184
Msa1070610 AT3G23770.1 31.696 448 270 21 26 450 37 471 3.11e-52 184
Msa1070610 AT4G16260.2 33.228 316 196 8 36 348 4 307 3.69e-52 179
Msa1070610 AT3G57270.1 33.951 324 200 9 26 346 27 339 6.04e-51 176
Msa1070610 AT3G57260.1 32.749 342 209 10 9 346 14 338 2.77e-50 175
Msa1070610 AT3G57260.2 32.749 342 209 10 9 346 30 354 3.85e-50 175
Msa1070610 AT2G26600.1 31.461 356 220 12 21 363 29 373 1.06e-49 174
Msa1070610 AT1G30080.2 32.174 345 212 11 4 337 12 345 2.73e-49 173
Msa1070610 AT5G42720.1 35.514 321 189 11 26 337 26 337 3.56e-49 174
Msa1070610 AT1G30080.1 32.174 345 212 11 4 337 12 345 3.88e-49 174
Msa1070610 AT3G15800.1 32.647 340 207 12 20 348 37 365 2.85e-48 171
Msa1070610 AT5G42100.2 35.119 336 195 13 23 346 24 348 1.22e-47 170
Msa1070610 AT5G42100.1 35.119 336 195 13 23 346 24 348 1.70e-47 170
Msa1070610 AT4G34480.2 36.533 323 182 14 26 337 26 336 2.81e-47 167
Msa1070610 AT1G32860.1 33.538 325 192 12 26 338 29 341 1.44e-46 167
Msa1070610 AT2G01630.2 31.138 334 209 11 26 348 23 346 8.01e-46 164
Msa1070610 AT5G24318.4 30.484 351 214 13 7 342 7 342 2.82e-45 162
Msa1070610 AT4G29360.1 26.294 483 306 16 5 452 10 477 2.01e-44 164
Msa1070610 AT4G18340.2 30.946 349 219 12 9 347 17 353 2.86e-44 160
Msa1070610 AT3G57240.1 31.707 328 201 11 19 342 28 336 3.01e-44 159
Msa1070610 AT4G18340.1 31.176 340 212 12 9 338 17 344 5.25e-44 159
Msa1070610 AT4G29360.2 25.971 489 310 16 5 452 10 487 8.01e-44 162
Msa1070610 AT1G11820.1 29.940 334 215 10 26 349 44 368 5.30e-42 154
Msa1070610 AT3G61810.1 28.869 336 207 12 26 347 55 372 6.68e-40 148
Msa1070610 AT2G27500.2 29.377 337 217 11 24 350 27 352 1.13e-39 147
Msa1070610 AT2G27500.1 28.933 356 230 13 24 368 27 370 1.70e-39 147
Msa1070610 AT4G34480.3 32.665 349 207 15 115 450 3 336 4.50e-39 146
Msa1070610 AT3G46570.1 30.117 342 215 15 11 342 13 340 1.02e-37 141
Msa1070610 AT1G77780.1 29.412 323 208 9 27 344 25 332 1.96e-34 132
Msa1070610 AT2G26600.2 30.714 280 171 11 96 363 11 279 2.46e-34 130
Msa1070610 AT5G24318.3 29.641 334 196 15 138 450 1 316 1.28e-33 129
Msa1070610 AT5G20390.1 28.529 333 216 11 19 344 26 343 1.10e-32 127
Msa1070610 AT1G77790.1 28.530 347 222 13 7 342 8 339 4.97e-31 123
Msa1070610 AT5G20340.1 27.329 322 213 10 19 334 36 342 3.13e-30 121
Msa1070610 AT5G20330.1 26.393 341 219 11 11 334 8 333 5.02e-30 120
Msa1070610 AT3G55780.1 26.000 350 229 12 26 357 31 368 8.73e-30 120
Msa1070610 AT1G33220.1 27.597 308 205 9 19 320 27 322 1.53e-29 118
Msa1070610 AT2G27500.3 29.123 285 181 11 76 350 1 274 5.65e-29 116
Msa1070610 AT5G20560.1 26.984 315 210 10 26 334 34 334 5.40e-28 114

Find 131 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATAGACATCTGCGTTTA+AGG 0.135341 7_2:-66926573 None:intergenic
CATCAAAGACGTTGGTATAT+TGG 0.201622 7_2:-66926805 None:intergenic
ATTATAAACGTGCTCAATAT+TGG 0.203608 7_2:+66924940 Msa1070610:CDS
AACATCTTCACAACAGTTTC+TGG 0.211606 7_2:-66924792 None:intergenic
TGGATTCCATTGTCAGTTAT+TGG 0.212683 7_2:-66926785 None:intergenic
GAGAGAGAAGGGAACGGTTT+TGG 0.216296 7_2:-66924577 None:intergenic
ATTTCAGCAAGTTGATTATT+AGG 0.225555 7_2:-66924912 None:intergenic
TGGAAGGGCTTGGTGTGAAC+TGG 0.270727 7_2:+66924742 Msa1070610:CDS
CCTACTTCTCCTACCAAAAT+TGG 0.271582 7_2:-66926881 None:intergenic
GTTGTTGATGTTAGGATTAA+TGG 0.274912 7_2:+66924701 Msa1070610:CDS
TGCAACAACCTTGATGCTAA+TGG 0.283164 7_2:+66927304 Msa1070610:CDS
TTTCGGCGACACGCCAATTT+TGG 0.288643 7_2:+66926868 Msa1070610:CDS
AAGTTTCCGATGGATCTTTC+GGG 0.294935 7_2:+66927118 Msa1070610:CDS
GCTCTCAAATCGATCGGTTT+CGG 0.295941 7_2:+66926851 Msa1070610:CDS
TAAGGGTACTGTTGCCTTTA+CGG 0.296654 7_2:-66926555 None:intergenic
ATTAACTTTGCTTGCACCTT+TGG 0.307246 7_2:+66927250 Msa1070610:CDS
TTCATCGAAGTTTATCTGTT+TGG 0.307651 7_2:+66927013 Msa1070610:CDS
TCTTATTGCATTGCCGGAAT+TGG 0.311120 7_2:-66926930 None:intergenic
GTAGAATCTTATTGCATTGC+CGG 0.319258 7_2:-66926936 None:intergenic
GGGTAAATGTTGACAGTAAA+TGG 0.333092 7_2:-66926695 None:intergenic
TTCCATCTGCGGGAATATTT+CGG 0.334659 7_2:+66926615 Msa1070610:CDS
TTTACAATGTTGTTGATGTT+AGG 0.335818 7_2:+66924693 Msa1070610:CDS
AGACGGTGATAGTGATGAAA+TGG 0.342594 7_2:-66924485 None:intergenic
CAGATAAACTTCGATGAATC+CGG 0.350042 7_2:-66927008 None:intergenic
TTATAAACGTGCTCAATATT+GGG 0.352564 7_2:+66924941 Msa1070610:CDS
GTGAAGATGTTGAAGGATAA+TGG 0.352574 7_2:+66924804 Msa1070610:CDS
GTTACTCGTTATAACTTTGA+TGG 0.354819 7_2:+66924975 Msa1070610:CDS
TGTTGTTATGTGGAAGGGCT+TGG 0.368756 7_2:+66924732 Msa1070610:CDS
GGTGACAAGAATGCCAATTC+CGG 0.398140 7_2:+66926917 Msa1070610:CDS
GAAGTTTCCGATGGATCTTT+CGG 0.401121 7_2:+66927117 Msa1070610:CDS
TTGCTGAGATCTTTAGCATC+AGG 0.401772 7_2:-66927214 None:intergenic
TTGTTGATGTTAGGATTAAT+GGG 0.405844 7_2:+66924702 Msa1070610:CDS
TTGTGAAGTTAGAGAGAGAA+GGG 0.406470 7_2:-66924588 None:intergenic
TCGAAGAAGGCGAAGTTGAA+TGG 0.408365 7_2:-66926749 None:intergenic
AGTCATGAGACCATTGATAT+CGG 0.412963 7_2:-66926639 None:intergenic
TCAACTTCGCCTTCTTCGAC+GGG 0.422981 7_2:+66926753 Msa1070610:CDS
TGAAGATGTTGAAGGATAAT+GGG 0.423140 7_2:+66924805 Msa1070610:CDS
CGATGAATCCGGGGCGGAGA+GGG 0.424811 7_2:-66926997 None:intergenic
TTCAACTTCGCCTTCTTCGA+CGG 0.430662 7_2:+66926752 Msa1070610:CDS
GACGATCCTGATTCTGCGTC+TGG 0.432976 7_2:-66927357 None:intergenic
GTACTACCAGACGCAGAATC+AGG 0.436349 7_2:+66927351 Msa1070610:CDS
ACCAAGACCAGCTTCATTGA+TGG 0.438757 7_2:-66926528 None:intergenic
TTTATCTACCCCGTCGAAGA+AGG 0.451188 7_2:-66926762 None:intergenic
TCCGCAGATATGTAGCGGTT+GGG 0.453302 7_2:+66926429 Msa1070610:intron
TACCCCTTCTTAAGTCTCTA+CGG 0.454310 7_2:+66926713 Msa1070610:CDS
ATGCTGAAGAAGGAACTATC+TGG 0.458076 7_2:-66927453 None:intergenic
AACGGAGAGGCTAAGGAGTA+AGG 0.458554 7_2:-66924351 None:intergenic
AGAGAGAAACGGAGAGGCTA+AGG 0.461912 7_2:-66924358 None:intergenic
TGATACTACAATGACTGCTT+TGG 0.463045 7_2:+66924857 Msa1070610:CDS
CTTCAAAACAAACTTCTAGT+AGG 0.464131 7_2:+66927145 Msa1070610:CDS
GCATTCTTGTCACCTTCTGT+TGG 0.465889 7_2:-66926908 None:intergenic
GGAAGGGCTTGGTGTGAACT+GGG 0.467914 7_2:+66924743 Msa1070610:CDS
GGTTTCAACATTTATTTGAC+CGG 0.468679 7_2:+66927582 Msa1070610:three_prime_UTR
AAGCATTTCCATTAGCATCA+AGG 0.472386 7_2:-66927312 None:intergenic
CGAAGAAGGCGAAGTTGAAT+GGG 0.474909 7_2:-66926748 None:intergenic
CAATCAAACAAACCAATTAG+AGG 0.475078 7_2:+66924389 Msa1070610:five_prime_UTR
GACGGTGATAGTGATGAAAT+GGG 0.478927 7_2:-66924484 None:intergenic
TTCCGCAGATATGTAGCGGT+TGG 0.484860 7_2:+66926428 Msa1070610:intron
ACCCCTTCTTAAGTCTCTAC+GGG 0.484918 7_2:+66926714 Msa1070610:CDS
CAGTGTCTCTCAAAGTTACC+TGG 0.486453 7_2:-66927067 None:intergenic
GATTGTACTGCACTTGGGTA+TGG 0.490793 7_2:+66927274 Msa1070610:CDS
TGATGCAAATTTCGATACAT+TGG 0.491804 7_2:+66926823 Msa1070610:CDS
AAACAACAAAGCAGCAAATG+AGG 0.493412 7_2:-66927488 None:intergenic
TGGGGAATATTTCGATATGA+TGG 0.495745 7_2:+66927088 Msa1070610:CDS
TGTTCGCAGCGAGTCTAGAA+AGG 0.496041 7_2:-66926967 None:intergenic
GCCATCAATGAAGCTGGTCT+TGG 0.496624 7_2:+66926527 Msa1070610:CDS
AACGTGCTCAATATTGGGTT+AGG 0.498245 7_2:+66924946 Msa1070610:CDS
GTTGAAATGTTGTCTGTAGT+AGG 0.500081 7_2:-66927409 None:intergenic
ATGACTGCTTTGGCTGGTAG+TGG 0.501400 7_2:+66924867 Msa1070610:CDS
TGGTAGTGGAATTGAAGTTA+TGG 0.502034 7_2:+66924881 Msa1070610:CDS
TAAATAAACTAGATATCATC+CGG 0.514578 7_2:-66927601 None:intergenic
TTTGGAGATTGTACTGCACT+TGG 0.515034 7_2:+66927268 Msa1070610:CDS
TTGTTTCTGTCAGAGAGAAA+CGG 0.516816 7_2:-66924369 None:intergenic
GTCATGAGACCATTGATATC+GGG 0.521177 7_2:-66926638 None:intergenic
GTTTCTGCTCTCAAATCGAT+CGG 0.522943 7_2:+66926845 Msa1070610:CDS
CAAAATGCCATCAATGAAGC+TGG 0.527897 7_2:+66926521 Msa1070610:CDS
ATCAAAGAAGATGCTGAAGA+AGG 0.530104 7_2:-66927463 None:intergenic
AGATAAACTTCGATGAATCC+GGG 0.532252 7_2:-66927007 None:intergenic
TTTGTGAAGTTAGAGAGAGA+AGG 0.537861 7_2:-66924589 None:intergenic
TGCTGAGATCTTTAGCATCA+GGG 0.538134 7_2:-66927213 None:intergenic
CAAACTTCTAGTAGGTGCAC+AGG 0.538210 7_2:+66927153 Msa1070610:CDS
ATATAGACATCTGCGTTTAA+GGG 0.538392 7_2:-66926572 None:intergenic
CAGGTAACTTTGAGAGACAC+TGG 0.539845 7_2:+66927068 Msa1070610:CDS
GACAATCAAGTTCCATCTGC+GGG 0.543282 7_2:+66926605 Msa1070610:CDS
GATGAATCCGGGGCGGAGAG+GGG 0.546532 7_2:-66926996 None:intergenic
GACGCGAAGAGCATTGCTCC+AGG 0.552654 7_2:+66927049 Msa1070610:CDS
ACTACAATGACTGCTTTGGC+TGG 0.558501 7_2:+66924861 Msa1070610:CDS
ATATTTCGGCCCGATATCAA+TGG 0.563489 7_2:+66926629 Msa1070610:CDS
TCGATGAATCCGGGGCGGAG+AGG 0.565244 7_2:-66926998 None:intergenic
AAGTTAGAGAGAGAAGGGAA+CGG 0.565537 7_2:-66924583 None:intergenic
TTGGAGATTGTACTGCACTT+GGG 0.571116 7_2:+66927269 Msa1070610:CDS
AACTGTTGTGAAGATGTTGA+AGG 0.573217 7_2:+66924797 Msa1070610:CDS
GATAAACCAATAACTGACAA+TGG 0.575139 7_2:+66926779 Msa1070610:CDS
TCTAGACTCGCTGCGAACAA+AGG 0.575607 7_2:+66926971 Msa1070610:CDS
AAAGGAACCCCTCTCCGCCC+CGG 0.576993 7_2:+66926989 Msa1070610:CDS
GAAAGATCCATCGGAAACTT+CGG 0.579080 7_2:-66927115 None:intergenic
ATCACCGTCTTATTCATCGT+GGG 0.579244 7_2:+66924498 Msa1070610:five_prime_UTR
GAAGTAGGATGGCCAACAGA+AGG 0.581640 7_2:+66926896 Msa1070610:CDS
TGGTCTTGGTGACACCGTAA+AGG 0.581918 7_2:+66926541 Msa1070610:CDS
AATGTTCTGCAGTGCAGGAA+AGG 0.584113 7_2:-66926498 None:intergenic
CAATGGTCTCATGACTCAGA+TGG 0.589085 7_2:+66926646 Msa1070610:CDS
GAAATTTGCATCAAAGACGT+TGG 0.589177 7_2:-66926813 None:intergenic
AGGTAACTTTGAGAGACACT+GGG 0.591795 7_2:+66927069 Msa1070610:CDS
GTTCCCGTAGAGACTTAAGA+AGG 0.603438 7_2:-66926717 None:intergenic
AACAACAAAGCAGCAAATGA+GGG 0.604408 7_2:-66927487 None:intergenic
AGATGTCTATATGTCTCCGC+AGG 0.611737 7_2:+66926583 Msa1070610:CDS
GAAGGGCTTGGTGTGAACTG+GGG 0.611743 7_2:+66924744 Msa1070610:CDS
ACTCGTTATAACTTTGATGG+CGG 0.617236 7_2:+66924978 Msa1070610:CDS
GGGTTAAACATGCACCACAT+TGG 0.618943 7_2:-66927193 None:intergenic
TATCACCGTCTTATTCATCG+TGG 0.622354 7_2:+66924497 Msa1070610:five_prime_UTR
TGGATGATAAAATTGCAAGT+AGG 0.623501 7_2:-66927433 None:intergenic
TTCCCGTAGAGACTTAAGAA+GGG 0.632332 7_2:-66926716 None:intergenic
GTACAATTTCTCAACAAGAA+CGG 0.637978 7_2:+66926668 Msa1070610:CDS
ATCTTCACAACAGTTTCTGG+TGG 0.639053 7_2:-66924789 None:intergenic
AGTTGACCCGAAAGATCCAT+CGG 0.649595 7_2:-66927124 None:intergenic
TCCCGTAGAGACTTAAGAAG+GGG 0.652260 7_2:-66926715 None:intergenic
GGACAATCAAGTTCCATCTG+CGG 0.652978 7_2:+66926604 Msa1070610:CDS
AAGTGCAGTACAATCTCCAA+AGG 0.655496 7_2:-66927266 None:intergenic
TGGACAACCGAAGTTTCCGA+TGG 0.662375 7_2:+66927108 Msa1070610:CDS
AAACTTCTAGTAGGTGCACA+GGG 0.662815 7_2:+66927154 Msa1070610:CDS
TCTGTTTGGACTCATCGATG+AGG 0.680701 7_2:+66927027 Msa1070610:CDS
TCGCAGCGAGTCTAGAAAGG+AGG 0.683390 7_2:-66926964 None:intergenic
GATAAACTTCGATGAATCCG+GGG 0.689389 7_2:-66927006 None:intergenic
AATGCAATAAGATTCTACAA+TGG 0.690889 7_2:+66926941 Msa1070610:CDS
TGAAATATCTTGATCCAATG+TGG 0.694528 7_2:+66927179 Msa1070610:CDS
CAACTTCGCCTTCTTCGACG+GGG 0.696178 7_2:+66926754 Msa1070610:CDS
GATGGAACTTGATTGTCCTG+CGG 0.701807 7_2:-66926599 None:intergenic
GAAACCCACGATGAATAAGA+CGG 0.707131 7_2:-66924502 None:intergenic
TCTGTCAGAGAGAAACGGAG+AGG 0.734759 7_2:-66924364 None:intergenic
AAACTTCGATGAATCCGGGG+CGG 0.742113 7_2:-66927003 None:intergenic
GGTAACTTTGAGAGACACTG+GGG 0.786507 7_2:+66927070 Msa1070610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTATTTTTGTC+AGG + chr7_2:66925317-66925336 Msa1070610:intron 10.0%
!!! TTTTATTTTTATTTTTGTCA+GGG + chr7_2:66925318-66925337 Msa1070610:intron 10.0%
!!! ATTTTTATTCGTTGAGTTTA+GGG + chr7_2:66924316-66924335 Msa1070610:five_prime_UTR 20.0%
!!! TTTGTTAGATTTTTGATTCA+TGG + chr7_2:66925283-66925302 Msa1070610:intron 20.0%
!! ATCATTATTATGAACACAAA+GGG - chr7_2:66925374-66925393 None:intergenic 20.0%
!! AATCATTATTATGAACACAA+AGG - chr7_2:66925375-66925394 None:intergenic 20.0%
!! ATAAAAGAATCTAATTCTGA+GGG - chr7_2:66925526-66925545 None:intergenic 20.0%
!! AATAAAAGAATCTAATTCTG+AGG - chr7_2:66925527-66925546 None:intergenic 20.0%
!!! TCAGAATTAGATTCTTTTAT+TGG + chr7_2:66925526-66925545 Msa1070610:intron 20.0%
!!! GATTTTATTGAACATTTTGA+AGG + chr7_2:66926055-66926074 Msa1070610:intron 20.0%
!! TTATTGTAAGCTTTCAAAAA+TGG - chr7_2:66926461-66926480 None:intergenic 20.0%
!! TAAATAAACTAGATATCATC+CGG - chr7_2:66927604-66927623 None:intergenic 20.0%
!! GATTTTTATTCGTTGAGTTT+AGG + chr7_2:66924315-66924334 Msa1070610:five_prime_UTR 25.0%
!!! AAAATGAAGAAGTTTTGTTG+GGG - chr7_2:66924646-66924665 None:intergenic 25.0%
!!! GAAAATGAAGAAGTTTTGTT+GGG - chr7_2:66924647-66924666 None:intergenic 25.0%
!!! TGAAAATGAAGAAGTTTTGT+TGG - chr7_2:66924648-66924667 None:intergenic 25.0%
! ATCTCACAATGGAAAAAAAT+TGG + chr7_2:66924667-66924686 Msa1070610:exon 25.0%
! TTTACAATGTTGTTGATGTT+AGG + chr7_2:66924693-66924712 Msa1070610:CDS 25.0%
! TTGTTGATGTTAGGATTAAT+GGG + chr7_2:66924702-66924721 Msa1070610:CDS 25.0%
!!! ATTTCAGCAAGTTGATTATT+AGG - chr7_2:66924915-66924934 None:intergenic 25.0%
! ATTATAAACGTGCTCAATAT+TGG + chr7_2:66924940-66924959 Msa1070610:CDS 25.0%
! TTATAAACGTGCTCAATATT+GGG + chr7_2:66924941-66924960 Msa1070610:CDS 25.0%
!!! AATTTTTCGAGATTTTGTGT+TGG + chr7_2:66925120-66925139 Msa1070610:intron 25.0%
!!! TAGATTTTTGATTCATGGTT+AGG + chr7_2:66925288-66925307 Msa1070610:intron 25.0%
!!! TGATTATGCATTTTGATTGA+TGG + chr7_2:66925396-66925415 Msa1070610:intron 25.0%
!!! AGTTGTTCTTGTTTTAATCA+AGG + chr7_2:66925478-66925497 Msa1070610:intron 25.0%
!! TTAGATTCTTTTATTGGTGT+TGG + chr7_2:66925532-66925551 Msa1070610:intron 25.0%
!!! TTCCTTGTAGTAACTTTTTT+CGG + chr7_2:66925566-66925585 Msa1070610:intron 25.0%
! AGAACAAATACATTATACCT+CGG - chr7_2:66925594-66925613 None:intergenic 25.0%
! ATGTGCATATATCATATTCT+TGG + chr7_2:66925692-66925711 Msa1070610:intron 25.0%
!!! ATTTTGAGAGTTCATATAAC+AGG + chr7_2:66925760-66925779 Msa1070610:intron 25.0%
!! TTTTCCTTCTGTATTATAGT+TGG + chr7_2:66925846-66925865 Msa1070610:intron 25.0%
!! GTCTGTTCAAACAATTTTAA+AGG + chr7_2:66925879-66925898 Msa1070610:intron 25.0%
!!! CAATTTTAAAGGAGTTAGAT+TGG + chr7_2:66925890-66925909 Msa1070610:intron 25.0%
!! TATTTTTCACAATCAGCAAT+TGG - chr7_2:66925967-66925986 None:intergenic 25.0%
! TTTGACAACACTAGATTTAA+TGG + chr7_2:66926032-66926051 Msa1070610:intron 25.0%
! TTGACAACACTAGATTTAAT+GGG + chr7_2:66926033-66926052 Msa1070610:intron 25.0%
! TGGTGTTTAATAATAAGAAG+CGG - chr7_2:66926086-66926105 None:intergenic 25.0%
! ATTCATCAAAGCTTAAAATG+TGG - chr7_2:66926106-66926125 None:intergenic 25.0%
! GCACAAATTCACATTAAAAT+CGG - chr7_2:66926393-66926412 None:intergenic 25.0%
! AATGCAATAAGATTCTACAA+TGG + chr7_2:66926941-66926960 Msa1070610:CDS 25.0%
CAATCAAACAAACCAATTAG+AGG + chr7_2:66924389-66924408 Msa1070610:five_prime_UTR 30.0%
! GTTTCTTTTTGACCTCTAAT+TGG - chr7_2:66924404-66924423 None:intergenic 30.0%
! TCTTCATTTTCATCTCACAA+TGG + chr7_2:66924656-66924675 Msa1070610:exon 30.0%
GTTGTTGATGTTAGGATTAA+TGG + chr7_2:66924701-66924720 Msa1070610:CDS 30.0%
!!! TGTTTTTGTTGTTATGTGGA+AGG + chr7_2:66924726-66924745 Msa1070610:CDS 30.0%
!!! GTTTTTGTTGTTATGTGGAA+GGG + chr7_2:66924727-66924746 Msa1070610:CDS 30.0%
TGAAGATGTTGAAGGATAAT+GGG + chr7_2:66924805-66924824 Msa1070610:CDS 30.0%
GTTACTCGTTATAACTTTGA+TGG + chr7_2:66924975-66924994 Msa1070610:CDS 30.0%
! GAGAATCATTTTACCATTCT+AGG + chr7_2:66925614-66925633 Msa1070610:intron 30.0%
! AATCATTTTACCATTCTAGG+AGG + chr7_2:66925617-66925636 Msa1070610:intron 30.0%
GCATATATCATATTCTTGGA+AGG + chr7_2:66925696-66925715 Msa1070610:intron 30.0%
! ACAGGAAATTTTGCATCAAA+AGG + chr7_2:66925778-66925797 Msa1070610:intron 30.0%
TCAACCAACTATAATACAGA+AGG - chr7_2:66925853-66925872 None:intergenic 30.0%
! GCTTGTAGAGATTTTATTGA+TGG + chr7_2:66925914-66925933 Msa1070610:intron 30.0%
AAATCTAGTGTTGTCAAAAG+CGG - chr7_2:66926030-66926049 None:intergenic 30.0%
! TAGCGAATAATTTGTAATGC+TGG + chr7_2:66926211-66926230 Msa1070610:intron 30.0%
!! AAGATGGCATTGATGAATTT+GGG - chr7_2:66926310-66926329 None:intergenic 30.0%
!! AAAGATGGCATTGATGAATT+TGG - chr7_2:66926311-66926330 None:intergenic 30.0%
CATTAAAATCGGTCGAAATT+CGG - chr7_2:66926382-66926401 None:intergenic 30.0%
ATATAGACATCTGCGTTTAA+GGG - chr7_2:66926575-66926594 None:intergenic 30.0%
GTACAATTTCTCAACAAGAA+CGG + chr7_2:66926668-66926687 Msa1070610:CDS 30.0%
GATAAACCAATAACTGACAA+TGG + chr7_2:66926779-66926798 Msa1070610:CDS 30.0%
TGATGCAAATTTCGATACAT+TGG + chr7_2:66926823-66926842 Msa1070610:CDS 30.0%
TTCATCGAAGTTTATCTGTT+TGG + chr7_2:66927013-66927032 Msa1070610:CDS 30.0%
CTTCAAAACAAACTTCTAGT+AGG + chr7_2:66927145-66927164 Msa1070610:CDS 30.0%
TGAAATATCTTGATCCAATG+TGG + chr7_2:66927179-66927198 Msa1070610:CDS 30.0%
TGGATGATAAAATTGCAAGT+AGG - chr7_2:66927436-66927455 None:intergenic 30.0%
!!! TGCTTTTTCTGTGATTCTAT+TGG + chr7_2:66927513-66927532 Msa1070610:CDS 30.0%
GGTTTCAACATTTATTTGAC+CGG + chr7_2:66927582-66927601 Msa1070610:three_prime_UTR 30.0%
!! TTGTTTCTGTCAGAGAGAAA+CGG - chr7_2:66924372-66924391 None:intergenic 35.0%
TTGTGAAGTTAGAGAGAGAA+GGG - chr7_2:66924591-66924610 None:intergenic 35.0%
TTTGTGAAGTTAGAGAGAGA+AGG - chr7_2:66924592-66924611 None:intergenic 35.0%
!!! GGGTTGTTTTTGTTGTTATG+TGG + chr7_2:66924722-66924741 Msa1070610:CDS 35.0%
AACATCTTCACAACAGTTTC+TGG - chr7_2:66924795-66924814 None:intergenic 35.0%
AACTGTTGTGAAGATGTTGA+AGG + chr7_2:66924797-66924816 Msa1070610:CDS 35.0%
GTGAAGATGTTGAAGGATAA+TGG + chr7_2:66924804-66924823 Msa1070610:CDS 35.0%
TGATACTACAATGACTGCTT+TGG + chr7_2:66924857-66924876 Msa1070610:CDS 35.0%
!! TGGTAGTGGAATTGAAGTTA+TGG + chr7_2:66924881-66924900 Msa1070610:CDS 35.0%
ACTCGTTATAACTTTGATGG+CGG + chr7_2:66924978-66924997 Msa1070610:CDS 35.0%
TGAAGCAAGCACATTATACA+AGG - chr7_2:66925164-66925183 None:intergenic 35.0%
GTATAATGTGCTTGCTTCAT+TGG + chr7_2:66925165-66925184 Msa1070610:intron 35.0%
!!! TTTTGATTGATGGCGAGTTT+TGG + chr7_2:66925406-66925425 Msa1070610:intron 35.0%
!!! TTTGATTGATGGCGAGTTTT+GGG + chr7_2:66925407-66925426 Msa1070610:intron 35.0%
! ATCAAGGAAGCTTTATGTAC+TGG + chr7_2:66925494-66925513 Msa1070610:intron 35.0%
! TCAAGGAAGCTTTATGTACT+GGG + chr7_2:66925495-66925514 Msa1070610:intron 35.0%
CACCGAAAAAAGTTACTACA+AGG - chr7_2:66925571-66925590 None:intergenic 35.0%
CCAATCCAATGACAAAAACA+AGG - chr7_2:66926255-66926274 None:intergenic 35.0%
!!! CCTTGTTTTTGTCATTGGAT+TGG + chr7_2:66926252-66926271 Msa1070610:intron 35.0%
!! GGATTGGTCAAACACTAAAA+TGG + chr7_2:66926268-66926287 Msa1070610:intron 35.0%
TTGGTCAAACACTAAAATGG+TGG + chr7_2:66926271-66926290 Msa1070610:intron 35.0%
!! AGATGGCATTGATGAATTTG+GGG - chr7_2:66926309-66926328 None:intergenic 35.0%
TCATCAATGCCATCTTTAGT+TGG + chr7_2:66926314-66926333 Msa1070610:intron 35.0%
TACATATCTGCGGAAAAAGA+TGG - chr7_2:66926423-66926442 None:intergenic 35.0%
CATATAGACATCTGCGTTTA+AGG - chr7_2:66926576-66926595 None:intergenic 35.0%
AGTCATGAGACCATTGATAT+CGG - chr7_2:66926642-66926661 None:intergenic 35.0%
GGGTAAATGTTGACAGTAAA+TGG - chr7_2:66926698-66926717 None:intergenic 35.0%
TGGATTCCATTGTCAGTTAT+TGG - chr7_2:66926788-66926807 None:intergenic 35.0%
CATCAAAGACGTTGGTATAT+TGG - chr7_2:66926808-66926827 None:intergenic 35.0%
GAAATTTGCATCAAAGACGT+TGG - chr7_2:66926816-66926835 None:intergenic 35.0%
GTAGAATCTTATTGCATTGC+CGG - chr7_2:66926939-66926958 None:intergenic 35.0%
AGATAAACTTCGATGAATCC+GGG - chr7_2:66927010-66927029 None:intergenic 35.0%
CAGATAAACTTCGATGAATC+CGG - chr7_2:66927011-66927030 None:intergenic 35.0%
TGGGGAATATTTCGATATGA+TGG + chr7_2:66927088-66927107 Msa1070610:CDS 35.0%
ATTAACTTTGCTTGCACCTT+TGG + chr7_2:66927250-66927269 Msa1070610:CDS 35.0%
AAGCATTTCCATTAGCATCA+AGG - chr7_2:66927315-66927334 None:intergenic 35.0%
GTTGAAATGTTGTCTGTAGT+AGG - chr7_2:66927412-66927431 None:intergenic 35.0%
ATCAAAGAAGATGCTGAAGA+AGG - chr7_2:66927466-66927485 None:intergenic 35.0%
AACAACAAAGCAGCAAATGA+GGG - chr7_2:66927490-66927509 None:intergenic 35.0%
AAACAACAAAGCAGCAAATG+AGG - chr7_2:66927491-66927510 None:intergenic 35.0%
! GAATTTTGCAGATTGAGAGT+TGG + chr7_2:66927631-66927650 Msa1070610:three_prime_UTR 35.0%
! GACGGTGATAGTGATGAAAT+GGG - chr7_2:66924487-66924506 None:intergenic 40.0%
! AGACGGTGATAGTGATGAAA+TGG - chr7_2:66924488-66924507 None:intergenic 40.0%
! TATCACCGTCTTATTCATCG+TGG + chr7_2:66924497-66924516 Msa1070610:five_prime_UTR 40.0%
! ATCACCGTCTTATTCATCGT+GGG + chr7_2:66924498-66924517 Msa1070610:five_prime_UTR 40.0%
GAAACCCACGATGAATAAGA+CGG - chr7_2:66924505-66924524 None:intergenic 40.0%
!!! AGTGGGTTTTGGAGATTAAG+CGG - chr7_2:66924555-66924574 None:intergenic 40.0%
AAGTTAGAGAGAGAAGGGAA+CGG - chr7_2:66924586-66924605 None:intergenic 40.0%
! ATCTTCACAACAGTTTCTGG+TGG - chr7_2:66924792-66924811 None:intergenic 40.0%
AACGTGCTCAATATTGGGTT+AGG + chr7_2:66924946-66924965 Msa1070610:CDS 40.0%
!!! TAGGAGGTGATTGCTGTTTT+AGG + chr7_2:66925633-66925652 Msa1070610:intron 40.0%
!!! AGGAGGTGATTGCTGTTTTA+GGG + chr7_2:66925634-66925653 Msa1070610:intron 40.0%
!!! CTGTTTTAGGGGAAGAGAAA+TGG + chr7_2:66925646-66925665 Msa1070610:intron 40.0%
! TTTTTGCATGTGCGCGTATA+TGG + chr7_2:66925732-66925751 Msa1070610:intron 40.0%
! TTTTGCATGTGCGCGTATAT+GGG + chr7_2:66925733-66925752 Msa1070610:intron 40.0%
!!! TGTCGCCTTGTTTTTGTCAT+TGG + chr7_2:66926247-66926266 Msa1070610:intron 40.0%
CTACTGCTTCCAACTAAAGA+TGG - chr7_2:66926326-66926345 None:intergenic 40.0%
! CTTTTTCCGCAGATATGTAG+CGG + chr7_2:66926424-66926443 Msa1070610:intron 40.0%
! TTTTGAATGTTCTGCAGTGC+AGG - chr7_2:66926506-66926525 None:intergenic 40.0%
CAAAATGCCATCAATGAAGC+TGG + chr7_2:66926521-66926540 Msa1070610:CDS 40.0%
!! TAAGGGTACTGTTGCCTTTA+CGG - chr7_2:66926558-66926577 None:intergenic 40.0%
TTCCATCTGCGGGAATATTT+CGG + chr7_2:66926615-66926634 Msa1070610:CDS 40.0%
ATATTTCGGCCCGATATCAA+TGG + chr7_2:66926629-66926648 Msa1070610:CDS 40.0%
GTCATGAGACCATTGATATC+GGG - chr7_2:66926641-66926660 None:intergenic 40.0%
TACCCCTTCTTAAGTCTCTA+CGG + chr7_2:66926713-66926732 Msa1070610:CDS 40.0%
TTCCCGTAGAGACTTAAGAA+GGG - chr7_2:66926719-66926738 None:intergenic 40.0%
GTTTCTGCTCTCAAATCGAT+CGG + chr7_2:66926845-66926864 Msa1070610:CDS 40.0%
CCTACTTCTCCTACCAAAAT+TGG - chr7_2:66926884-66926903 None:intergenic 40.0%
!! CCAATTTTGGTAGGAGAAGT+AGG + chr7_2:66926881-66926900 Msa1070610:CDS 40.0%
! TTTTGGTAGGAGAAGTAGGA+TGG + chr7_2:66926885-66926904 Msa1070610:CDS 40.0%
TCTTATTGCATTGCCGGAAT+TGG - chr7_2:66926933-66926952 None:intergenic 40.0%
GATAAACTTCGATGAATCCG+GGG - chr7_2:66927009-66927028 None:intergenic 40.0%
! AGGTAACTTTGAGAGACACT+GGG + chr7_2:66927069-66927088 Msa1070610:CDS 40.0%
GAAAGATCCATCGGAAACTT+CGG - chr7_2:66927118-66927137 None:intergenic 40.0%
GAAGTTTCCGATGGATCTTT+CGG + chr7_2:66927117-66927136 Msa1070610:CDS 40.0%
AAGTTTCCGATGGATCTTTC+GGG + chr7_2:66927118-66927137 Msa1070610:CDS 40.0%
AAACTTCTAGTAGGTGCACA+GGG + chr7_2:66927154-66927173 Msa1070610:CDS 40.0%
TGCTGAGATCTTTAGCATCA+GGG - chr7_2:66927216-66927235 None:intergenic 40.0%
TTGCTGAGATCTTTAGCATC+AGG - chr7_2:66927217-66927236 None:intergenic 40.0%
AAGTGCAGTACAATCTCCAA+AGG - chr7_2:66927269-66927288 None:intergenic 40.0%
TTTGGAGATTGTACTGCACT+TGG + chr7_2:66927268-66927287 Msa1070610:CDS 40.0%
TTGGAGATTGTACTGCACTT+GGG + chr7_2:66927269-66927288 Msa1070610:CDS 40.0%
TGCAACAACCTTGATGCTAA+TGG + chr7_2:66927304-66927323 Msa1070610:CDS 40.0%
! CGTCAAGCATGCAATTTTGA+AGG + chr7_2:66927376-66927395 Msa1070610:CDS 40.0%
ATGCTGAAGAAGGAACTATC+TGG - chr7_2:66927456-66927475 None:intergenic 40.0%
!!! CGGTTTTGGAAAGTGGGTTT+TGG - chr7_2:66924566-66924585 None:intergenic 45.0%
!!! AGGGAACGGTTTTGGAAAGT+GGG - chr7_2:66924572-66924591 None:intergenic 45.0%
!!! AAGGGAACGGTTTTGGAAAG+TGG - chr7_2:66924573-66924592 None:intergenic 45.0%
TGTTGTTATGTGGAAGGGCT+TGG + chr7_2:66924732-66924751 Msa1070610:CDS 45.0%
ACTACAATGACTGCTTTGGC+TGG + chr7_2:66924861-66924880 Msa1070610:CDS 45.0%
!!! GCGAGTTTTGGGATCAAAGA+AGG + chr7_2:66925418-66925437 Msa1070610:intron 45.0%
!!! AGTAACTTTTTTCGGTGCCG+AGG + chr7_2:66925574-66925593 Msa1070610:intron 45.0%
ACAGCAATCACCTCCTAGAA+TGG - chr7_2:66925630-66925649 None:intergenic 45.0%
!!! GGAGGTGATTGCTGTTTTAG+GGG + chr7_2:66925635-66925654 Msa1070610:intron 45.0%
ATAGCAGGGCTACAACATAG+TGG - chr7_2:66926005-66926024 None:intergenic 45.0%
ACTATGTTGTAGCCCTGCTA+TGG + chr7_2:66926004-66926023 Msa1070610:intron 45.0%
AAATCGGTCGAAATTCGGCA+AGG - chr7_2:66926377-66926396 None:intergenic 45.0%
AATGTTCTGCAGTGCAGGAA+AGG - chr7_2:66926501-66926520 None:intergenic 45.0%
ACCAAGACCAGCTTCATTGA+TGG - chr7_2:66926531-66926550 None:intergenic 45.0%
AGATGTCTATATGTCTCCGC+AGG + chr7_2:66926583-66926602 Msa1070610:CDS 45.0%
GATGGAACTTGATTGTCCTG+CGG - chr7_2:66926602-66926621 None:intergenic 45.0%
GGACAATCAAGTTCCATCTG+CGG + chr7_2:66926604-66926623 Msa1070610:CDS 45.0%
GACAATCAAGTTCCATCTGC+GGG + chr7_2:66926605-66926624 Msa1070610:CDS 45.0%
CAATGGTCTCATGACTCAGA+TGG + chr7_2:66926646-66926665 Msa1070610:CDS 45.0%
ACCCCTTCTTAAGTCTCTAC+GGG + chr7_2:66926714-66926733 Msa1070610:CDS 45.0%
TCCCGTAGAGACTTAAGAAG+GGG - chr7_2:66926718-66926737 None:intergenic 45.0%
GTTCCCGTAGAGACTTAAGA+AGG - chr7_2:66926720-66926739 None:intergenic 45.0%
CGAAGAAGGCGAAGTTGAAT+GGG - chr7_2:66926751-66926770 None:intergenic 45.0%
TCGAAGAAGGCGAAGTTGAA+TGG - chr7_2:66926752-66926771 None:intergenic 45.0%
TTCAACTTCGCCTTCTTCGA+CGG + chr7_2:66926752-66926771 Msa1070610:CDS 45.0%
TTTATCTACCCCGTCGAAGA+AGG - chr7_2:66926765-66926784 None:intergenic 45.0%
! GCTCTCAAATCGATCGGTTT+CGG + chr7_2:66926851-66926870 Msa1070610:CDS 45.0%
GCATTCTTGTCACCTTCTGT+TGG - chr7_2:66926911-66926930 None:intergenic 45.0%
GGTGACAAGAATGCCAATTC+CGG + chr7_2:66926917-66926936 Msa1070610:CDS 45.0%
TCTGTTTGGACTCATCGATG+AGG + chr7_2:66927027-66927046 Msa1070610:CDS 45.0%
CAGTGTCTCTCAAAGTTACC+TGG - chr7_2:66927070-66927089 None:intergenic 45.0%
! CAGGTAACTTTGAGAGACAC+TGG + chr7_2:66927068-66927087 Msa1070610:CDS 45.0%
! GGTAACTTTGAGAGACACTG+GGG + chr7_2:66927070-66927089 Msa1070610:CDS 45.0%
AGTTGACCCGAAAGATCCAT+CGG - chr7_2:66927127-66927146 None:intergenic 45.0%
CAAACTTCTAGTAGGTGCAC+AGG + chr7_2:66927153-66927172 Msa1070610:CDS 45.0%
GGGTTAAACATGCACCACAT+TGG - chr7_2:66927196-66927215 None:intergenic 45.0%
GATTGTACTGCACTTGGGTA+TGG + chr7_2:66927274-66927293 Msa1070610:CDS 45.0%
!!! TGATATAATTTTTTTATTTA+AGG + chr7_2:66927561-66927580 Msa1070610:three_prime_UTR 5.0%
AACGGAGAGGCTAAGGAGTA+AGG - chr7_2:66924354-66924373 None:intergenic 50.0%
AGAGAGAAACGGAGAGGCTA+AGG - chr7_2:66924361-66924380 None:intergenic 50.0%
TCTGTCAGAGAGAAACGGAG+AGG - chr7_2:66924367-66924386 None:intergenic 50.0%
! GAGAGAGAAGGGAACGGTTT+TGG - chr7_2:66924580-66924599 None:intergenic 50.0%
ATGACTGCTTTGGCTGGTAG+TGG + chr7_2:66924867-66924886 Msa1070610:CDS 50.0%
TGTCAAAAGCGGCCATAGCA+GGG - chr7_2:66926019-66926038 None:intergenic 50.0%
TTGTCAAAAGCGGCCATAGC+AGG - chr7_2:66926020-66926039 None:intergenic 50.0%
TTCCGCAGATATGTAGCGGT+TGG + chr7_2:66926428-66926447 Msa1070610:intron 50.0%
TCCGCAGATATGTAGCGGTT+GGG + chr7_2:66926429-66926448 Msa1070610:intron 50.0%
TCCCAACCGCTACATATCTG+CGG - chr7_2:66926433-66926452 None:intergenic 50.0%
! GCCATCAATGAAGCTGGTCT+TGG + chr7_2:66926527-66926546 Msa1070610:CDS 50.0%
! TGGTCTTGGTGACACCGTAA+AGG + chr7_2:66926541-66926560 Msa1070610:CDS 50.0%
TCAACTTCGCCTTCTTCGAC+GGG + chr7_2:66926753-66926772 Msa1070610:CDS 50.0%
! TTTCGGCGACACGCCAATTT+TGG + chr7_2:66926868-66926887 Msa1070610:CDS 50.0%
GAAGTAGGATGGCCAACAGA+AGG + chr7_2:66926896-66926915 Msa1070610:CDS 50.0%
TGTTCGCAGCGAGTCTAGAA+AGG - chr7_2:66926970-66926989 None:intergenic 50.0%
TCTAGACTCGCTGCGAACAA+AGG + chr7_2:66926971-66926990 Msa1070610:CDS 50.0%
AAACTTCGATGAATCCGGGG+CGG - chr7_2:66927006-66927025 None:intergenic 50.0%
TGGACAACCGAAGTTTCCGA+TGG + chr7_2:66927108-66927127 Msa1070610:CDS 50.0%
GTACTACCAGACGCAGAATC+AGG + chr7_2:66927351-66927370 Msa1070610:CDS 50.0%
!! TGGAAGGGCTTGGTGTGAAC+TGG + chr7_2:66924742-66924761 Msa1070610:CDS 55.0%
!! GGAAGGGCTTGGTGTGAACT+GGG + chr7_2:66924743-66924762 Msa1070610:CDS 55.0%
!! GAAGGGCTTGGTGTGAACTG+GGG + chr7_2:66924744-66924763 Msa1070610:CDS 55.0%
GGCCGAAATATTCCCGCAGA+TGG - chr7_2:66926620-66926639 None:intergenic 55.0%
CAACTTCGCCTTCTTCGACG+GGG + chr7_2:66926754-66926773 Msa1070610:CDS 55.0%
!! GGCGACACGCCAATTTTGGT+AGG + chr7_2:66926872-66926891 Msa1070610:CDS 55.0%
TCGCAGCGAGTCTAGAAAGG+AGG - chr7_2:66926967-66926986 None:intergenic 55.0%
GACGATCCTGATTCTGCGTC+TGG - chr7_2:66927360-66927379 None:intergenic 55.0%
!! GACGCGAAGAGCATTGCTCC+AGG + chr7_2:66927049-66927068 Msa1070610:CDS 60.0%
AAAGGAACCCCTCTCCGCCC+CGG + chr7_2:66926989-66927008 Msa1070610:CDS 65.0%
GATGAATCCGGGGCGGAGAG+GGG - chr7_2:66926999-66927018 None:intergenic 65.0%
CGATGAATCCGGGGCGGAGA+GGG - chr7_2:66927000-66927019 None:intergenic 65.0%
TCGATGAATCCGGGGCGGAG+AGG - chr7_2:66927001-66927020 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 66924267 66927663 66924267 ID=Msa1070610;Name=Msa1070610
chr7_2 mRNA 66924267 66927663 66924267 ID=Msa1070610-mRNA-1;Parent=Msa1070610;Name=Msa1070610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=408|1|1|1|1|1|2|123|480
chr7_2 exon 66924267 66925012 66924267 ID=Msa1070610-mRNA-1:exon:14366;Parent=Msa1070610-mRNA-1
chr7_2 exon 66926436 66927663 66926436 ID=Msa1070610-mRNA-1:exon:14367;Parent=Msa1070610-mRNA-1
chr7_2 five_prime_UTR 66924267 66924674 66924267 ID=Msa1070610-mRNA-1:five_prime_utr;Parent=Msa1070610-mRNA-1
chr7_2 CDS 66924675 66925012 66924675 ID=Msa1070610-mRNA-1:cds;Parent=Msa1070610-mRNA-1
chr7_2 CDS 66926436 66927540 66926436 ID=Msa1070610-mRNA-1:cds;Parent=Msa1070610-mRNA-1
chr7_2 three_prime_UTR 66927541 66927663 66927541 ID=Msa1070610-mRNA-1:three_prime_utr;Parent=Msa1070610-mRNA-1
Gene Sequence

>Msa1070610

ATGGAAAAAAATTGGATTTTTACAATGTTGTTGATGTTAGGATTAATGGGTTGTTTTTGTTGTTATGTGGAAGGGCTTGGTGTGAACTGGGGTACACAAGCAACACACAAGTTACCACCAGAAACTGTTGTGAAGATGTTGAAGGATAATGGGATTCAAAAAGTTAAGCTTTTTGATGCAGATGATACTACAATGACTGCTTTGGCTGGTAGTGGAATTGAAGTTATGGTTGCTATTCCTAATAATCAACTTGCTGAAATGAATGATTATAAACGTGCTCAATATTGGGTTAGGAAGAATGTTACTCGTTATAACTTTGATGGCGGTGTTAAGATCAAATATGTAGCGGTTGGGAATGAGCCATTTTTGAAAGCTTACAATAATTCATTCTTGAACATCACCTTTCCTGCACTGCAGAACATTCAAAATGCCATCAATGAAGCTGGTCTTGGTGACACCGTAAAGGCAACAGTACCCTTAAACGCAGATGTCTATATGTCTCCGCAGGACAATCAAGTTCCATCTGCGGGAATATTTCGGCCCGATATCAATGGTCTCATGACTCAGATGGTACAATTTCTCAACAAGAACGGAGCACCATTTACTGTCAACATTTACCCCTTCTTAAGTCTCTACGGGAACGACGATTTCCCATTCAACTTCGCCTTCTTCGACGGGGTAGATAAACCAATAACTGACAATGGAATCCAATATACCAACGTCTTTGATGCAAATTTCGATACATTGGTTTCTGCTCTCAAATCGATCGGTTTCGGCGACACGCCAATTTTGGTAGGAGAAGTAGGATGGCCAACAGAAGGTGACAAGAATGCCAATTCCGGCAATGCAATAAGATTCTACAATGGCCTCCTTTCTAGACTCGCTGCGAACAAAGGAACCCCTCTCCGCCCCGGATTCATCGAAGTTTATCTGTTTGGACTCATCGATGAGGACGCGAAGAGCATTGCTCCAGGTAACTTTGAGAGACACTGGGGAATATTTCGATATGATGGACAACCGAAGTTTCCGATGGATCTTTCGGGTCAACTTCAAAACAAACTTCTAGTAGGTGCACAGGGTGTGAAATATCTTGATCCAATGTGGTGCATGTTTAACCCTGATGCTAAAGATCTCAGCAAACTTGCTGATAACATTAACTTTGCTTGCACCTTTGGAGATTGTACTGCACTTGGGTATGGATCTTCTTGCAACAACCTTGATGCTAATGGAAATGCTTCTTATGCATTCAACATGTACTACCAGACGCAGAATCAGGATCGTCAAGCATGCAATTTTGAAGGTTTAGCTAAGCCTACTACAGACAACATTTCAACACCTACTTGCAATTTTATCATCCAGATAGTTCCTTCTTCAGCATCTTCTTTGATGCCCTCATTTGCTGCTTTGTTGTTTATTGCTTTTTCTGTGATTCTATTGGCTTAG
Protein sequence

>Msa1070610

MEKNWIFTMLLMLGLMGCFCCYVEGLGVNWGTQATHKLPPETVVKMLKDNGIQKVKLFDADDTTMTALAGSGIEVMVAIPNNQLAEMNDYKRAQYWVRKNVTRYNFDGGVKIKYVAVGNEPFLKAYNNSFLNITFPALQNIQNAINEAGLGDTVKATVPLNADVYMSPQDNQVPSAGIFRPDINGLMTQMVQFLNKNGAPFTVNIYPFLSLYGNDDFPFNFAFFDGVDKPITDNGIQYTNVFDANFDTLVSALKSIGFGDTPILVGEVGWPTEGDKNANSGNAIRFYNGLLSRLAANKGTPLRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQLQNKLLVGAQGVKYLDPMWCMFNPDAKDLSKLADNINFACTFGDCTALGYGSSCNNLDANGNASYAFNMYYQTQNQDRQACNFEGLAKPTTDNISTPTCNFIIQIVPSSASSLMPSFAALLFIAFSVILLA*