AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1101280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101280 MtrunA17_Chr7g0253091 98.958 480 5 0 1 480 1 480 0.0 976
Msa1101280 MtrunA17_Chr6g0461601 77.801 482 104 3 1 479 1 482 0.0 737
Msa1101280 MtrunA17_Chr4g0062771 56.329 474 198 3 6 474 15 484 0.0 545
Msa1101280 MtrunA17_Chr2g0306311 52.807 481 200 3 26 479 30 510 4.55e-178 509
Msa1101280 MtrunA17_Chr8g0383311 54.503 433 194 2 23 454 40 470 7.41e-175 500
Msa1101280 MtrunA17_Chr1g0148391 54.280 479 210 5 1 474 1 475 1.29e-174 499
Msa1101280 MtrunA17_Chr3g0138741 54.565 471 203 5 9 471 14 481 8.98e-171 489
Msa1101280 MtrunA17_Chr3g0129341 49.684 475 231 6 9 479 15 485 1.57e-157 456
Msa1101280 MtrunA17_Chr4g0069801 51.562 448 208 5 25 468 27 469 1.40e-154 448
Msa1101280 MtrunA17_Chr2g0290821 50.345 435 208 5 24 455 26 455 4.67e-154 447
Msa1101280 MtrunA17_Chr4g0076581 48.529 476 231 6 10 477 17 486 8.44e-154 446
Msa1101280 MtrunA17_Chr3g0105981 45.278 413 218 7 24 435 25 430 7.51e-116 347
Msa1101280 MtrunA17_Chr3g0144531 34.169 439 263 18 26 450 28 454 3.27e-62 209
Msa1101280 MtrunA17_Chr1g0161011 32.648 438 266 16 26 450 24 445 1.27e-60 206
Msa1101280 MtrunA17_Chr4g0034901 32.479 468 275 19 8 450 8 459 1.00e-58 200
Msa1101280 MtrunA17_Chr7g0223961 34.529 446 257 20 23 450 20 448 1.67e-57 196
Msa1101280 MtrunA17_Chr8g0389741 29.812 426 277 13 20 434 22 436 1.55e-56 195
Msa1101280 MtrunA17_Chr6g0487261 31.304 460 279 18 5 442 7 451 2.60e-56 195
Msa1101280 MtrunA17_Chr5g0439251 32.096 458 250 18 26 444 25 460 3.07e-56 194
Msa1101280 MtrunA17_Chr4g0038941 34.663 326 192 9 24 346 50 357 1.15e-55 189
Msa1101280 MtrunA17_Chr4g0038981 34.125 337 203 9 9 342 4 324 2.81e-55 187
Msa1101280 MtrunA17_Chr4g0039011 35.077 325 193 9 26 348 42 350 2.78e-54 186
Msa1101280 MtrunA17_Chr4g0038961 33.234 337 206 9 9 342 4 324 1.05e-53 183
Msa1101280 MtrunA17_Chr4g0038971 31.871 342 214 9 9 347 4 329 3.44e-53 182
Msa1101280 MtrunA17_Chr4g0046311 30.769 442 270 19 26 444 23 451 6.73e-53 185
Msa1101280 MtrunA17_Chr3g0110371 30.023 443 271 16 26 450 24 445 1.11e-52 185
Msa1101280 MtrunA17_Chr1g0189111 34.431 334 198 11 23 347 28 349 1.23e-52 183
Msa1101280 MtrunA17_Chr1g0177171 30.407 467 269 20 26 450 38 490 1.67e-52 184
Msa1101280 MtrunA17_Chr2g0294601 31.818 352 226 7 10 357 41 382 2.18e-52 181
Msa1101280 MtrunA17_Chr1g0146831 36.036 333 185 14 23 340 28 347 6.12e-52 180
Msa1101280 MtrunA17_Chr4g0003281 33.333 354 215 12 5 348 19 361 1.45e-51 179
Msa1101280 MtrunA17_Chr4g0043511 29.202 476 289 16 19 464 55 512 3.52e-50 179
Msa1101280 MtrunA17_Chr2g0294591 33.131 329 204 7 26 350 30 346 1.17e-49 173
Msa1101280 MtrunA17_Chr5g0434591 29.452 438 280 16 26 450 23 444 2.09e-49 176
Msa1101280 MtrunA17_Chr8g0378621 29.299 471 284 19 3 450 4 448 2.93e-49 176
Msa1101280 MtrunA17_Chr7g0250301 32.407 324 199 11 26 344 8 316 1.06e-48 169
Msa1101280 MtrunA17_Chr3g0119541 35.276 326 186 12 24 337 24 336 1.06e-48 171
Msa1101280 MtrunA17_Chr4g0064021 32.229 332 204 11 27 348 27 347 4.37e-48 170
Msa1101280 MtrunA17_Chr4g0075031 29.318 440 278 15 26 450 45 466 5.35e-48 173
Msa1101280 MtrunA17_Chr3g0121271 28.602 465 289 19 3 448 4 444 7.96e-48 172
Msa1101280 MtrunA17_Chr8g0339191 29.252 441 283 17 27 450 30 458 1.13e-47 171
Msa1101280 MtrunA17_Chr4g0039071 32.121 330 207 9 24 350 23 338 1.71e-47 168
Msa1101280 MtrunA17_Chr4g0043851 31.933 357 222 12 1 348 8 352 1.17e-46 166
Msa1101280 MtrunA17_Chr4g0026321 31.373 357 221 15 25 370 28 371 3.92e-46 164
Msa1101280 MtrunA17_Chr2g0321511 31.445 353 219 14 8 350 10 349 3.37e-45 162
Msa1101280 MtrunA17_Chr4g0039021 33.444 302 182 10 46 342 1 288 8.06e-45 159
Msa1101280 MtrunA17_Chr1g0174261 33.219 292 179 9 55 342 1 280 5.79e-44 158
Msa1101280 MtrunA17_Chr1g0155001 32.036 334 207 11 26 349 24 347 8.98e-43 156
Msa1101280 MtrunA17_Chr2g0285901 32.710 321 195 11 26 337 24 332 5.29e-42 154
Msa1101280 MtrunA17_Chr7g0234821 27.088 443 293 18 27 450 27 458 9.69e-41 152
Msa1101280 MtrunA17_Chr7g0250321 31.834 289 180 9 3 288 7 281 4.40e-38 140
Msa1101280 MtrunA17_Chr5g0436361 27.469 324 213 13 43 357 54 364 1.18e-25 108
Msa1101280 MtrunA17_Chr2g0294581 36.567 134 82 2 26 158 76 207 2.65e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101280 AT2G19440.2 74.667 450 111 2 6 455 3 449 0.0 692
Msa1101280 AT2G19440.1 74.667 450 111 2 6 455 3 449 0.0 692
Msa1101280 AT1G64760.1 75.964 441 105 1 15 455 14 453 0.0 691
Msa1101280 AT1G64760.2 75.964 441 105 1 15 455 14 453 0.0 691
Msa1101280 AT3G04010.1 68.151 449 141 2 23 470 30 477 0.0 631
Msa1101280 AT5G18220.1 66.245 474 148 5 9 477 13 479 0.0 627
Msa1101280 AT3G24330.1 52.101 476 225 3 6 479 19 493 2.06e-175 502
Msa1101280 AT5G64790.1 55.727 454 191 3 6 458 15 459 3.11e-174 498
Msa1101280 AT4G31140.1 53.416 483 211 7 6 479 6 483 7.04e-174 498
Msa1101280 AT5G58090.1 53.275 458 207 5 20 473 16 470 5.33e-168 482
Msa1101280 AT5G20870.1 52.489 442 195 6 23 454 27 463 4.20e-150 437
Msa1101280 AT4G17180.1 48.864 440 212 5 24 461 23 451 1.31e-146 428
Msa1101280 AT5G58480.1 44.519 447 236 7 23 466 23 460 1.35e-124 372
Msa1101280 AT5G55180.1 33.409 440 268 15 26 450 27 456 7.08e-67 222
Msa1101280 AT5G55180.2 34.038 426 256 15 26 436 27 442 1.39e-66 221
Msa1101280 AT2G16230.1 33.790 438 264 15 26 450 25 449 3.39e-65 219
Msa1101280 AT2G05790.1 33.333 462 253 21 26 450 25 468 8.37e-64 214
Msa1101280 AT3G55430.1 34.240 441 260 17 23 450 26 449 3.59e-63 212
Msa1101280 AT2G39640.1 32.522 452 269 17 9 448 13 440 2.87e-60 207
Msa1101280 AT4G26830.1 31.579 456 284 17 10 450 9 451 4.20e-60 204
Msa1101280 AT4G26830.2 32.273 440 270 17 26 450 29 455 3.83e-59 201
Msa1101280 AT2G01630.1 31.111 450 274 17 26 461 23 450 4.05e-58 200
Msa1101280 AT2G01630.3 30.716 433 269 16 26 444 23 438 1.06e-56 194
Msa1101280 AT3G13560.4 33.108 444 267 15 20 450 20 446 1.43e-56 196
Msa1101280 AT3G13560.1 33.108 444 267 15 20 450 20 446 1.43e-56 196
Msa1101280 AT3G13560.2 33.108 444 267 15 20 450 20 446 1.43e-56 196
Msa1101280 AT3G13560.5 33.108 444 267 15 20 450 20 446 1.43e-56 196
Msa1101280 AT3G13560.3 33.108 444 267 15 20 450 20 446 1.43e-56 196
Msa1101280 AT4G34480.1 33.030 439 263 17 26 450 26 447 2.40e-56 195
Msa1101280 AT3G07320.1 32.200 441 271 18 27 450 26 455 5.49e-56 193
Msa1101280 AT1G66250.1 30.543 442 269 15 26 450 32 452 1.52e-55 193
Msa1101280 AT5G24318.1 29.149 470 286 19 7 450 7 455 7.10e-55 190
Msa1101280 AT5G24318.2 29.348 460 278 19 7 440 7 445 2.26e-54 189
Msa1101280 AT1G11820.2 30.023 443 271 16 26 450 44 465 1.49e-53 188
Msa1101280 AT4G16260.1 32.722 327 206 7 24 348 22 336 1.52e-53 184
Msa1101280 AT4G14080.1 31.236 445 273 20 26 450 42 473 3.94e-53 186
Msa1101280 AT5G56590.1 29.295 454 280 17 20 451 20 454 5.27e-53 186
Msa1101280 AT1G11820.3 29.977 437 267 16 26 444 44 459 1.92e-52 184
Msa1101280 AT4G16260.2 33.228 316 196 8 36 348 4 307 2.58e-52 179
Msa1101280 AT3G23770.1 31.696 448 270 21 26 450 37 471 3.64e-52 183
Msa1101280 AT3G57270.1 33.951 324 200 9 26 346 27 339 1.03e-50 176
Msa1101280 AT3G57260.1 32.749 342 209 10 9 346 14 338 3.07e-50 175
Msa1101280 AT3G57260.2 32.749 342 209 10 9 346 30 354 3.93e-50 175
Msa1101280 AT5G42720.1 35.826 321 188 11 26 337 26 337 8.30e-50 176
Msa1101280 AT2G26600.1 31.461 356 220 12 21 363 29 373 9.75e-50 175
Msa1101280 AT1G30080.2 31.884 345 213 11 4 337 12 345 2.23e-48 171
Msa1101280 AT1G30080.1 31.884 345 213 11 4 337 12 345 2.55e-48 171
Msa1101280 AT3G15800.1 32.647 340 207 12 20 348 37 365 3.47e-48 171
Msa1101280 AT5G42100.2 35.119 336 195 13 23 346 24 348 1.01e-47 170
Msa1101280 AT5G42100.1 35.119 336 195 13 23 346 24 348 1.45e-47 170
Msa1101280 AT4G34480.2 36.533 323 182 14 26 337 26 336 2.26e-47 167
Msa1101280 AT1G32860.1 33.538 325 192 12 26 338 29 341 1.12e-46 167
Msa1101280 AT2G01630.2 31.138 334 209 11 26 348 23 346 5.19e-46 165
Msa1101280 AT5G24318.4 30.484 351 214 13 7 342 7 342 1.34e-45 163
Msa1101280 AT4G29360.1 26.501 483 305 16 5 452 10 477 5.99e-45 165
Msa1101280 AT4G18340.2 31.471 340 211 12 9 338 17 344 1.74e-44 160
Msa1101280 AT4G29360.2 26.176 489 309 16 5 452 10 487 2.11e-44 164
Msa1101280 AT3G57240.1 31.707 328 201 11 19 342 28 336 2.55e-44 159
Msa1101280 AT4G18340.1 31.176 340 212 12 9 338 17 344 2.81e-44 160
Msa1101280 AT1G11820.1 30.030 333 214 10 26 348 44 367 4.28e-42 154
Msa1101280 AT3G61810.1 29.167 336 206 12 26 347 55 372 1.98e-40 149
Msa1101280 AT2G27500.2 29.674 337 216 11 24 350 27 352 3.93e-40 149
Msa1101280 AT2G27500.1 29.213 356 229 13 24 368 27 370 5.67e-40 149
Msa1101280 AT4G34480.3 32.665 349 207 15 115 450 3 336 3.03e-39 147
Msa1101280 AT3G46570.1 30.409 342 214 15 11 342 13 340 1.89e-37 140
Msa1101280 AT1G77780.1 29.412 323 208 9 27 344 25 332 2.14e-34 132
Msa1101280 AT2G26600.2 30.714 280 171 11 96 363 11 279 2.49e-34 130
Msa1101280 AT5G24318.3 29.641 334 196 15 138 450 1 316 7.59e-34 130
Msa1101280 AT5G20390.1 28.529 333 216 11 19 344 26 343 1.77e-32 127
Msa1101280 AT1G77790.1 28.818 347 221 13 7 342 8 339 2.01e-31 124
Msa1101280 AT5G20340.1 27.640 322 212 10 19 334 36 342 3.22e-30 120
Msa1101280 AT5G20330.1 26.979 341 217 11 11 334 8 333 3.25e-30 120
Msa1101280 AT3G55780.1 26.000 350 229 12 26 357 31 368 5.34e-30 120
Msa1101280 AT1G33220.1 28.247 308 203 9 19 320 27 322 9.51e-30 119
Msa1101280 AT2G27500.3 29.474 285 180 11 76 350 1 274 1.74e-29 118
Msa1101280 AT5G20560.1 27.302 315 209 10 26 334 34 334 5.68e-28 114

Find 129 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATAAACGTGCTCAATAT+TGG 0.203608 7_3:+31968635 Msa1101280:CDS
CATCAAAGACGTTAGTATAT+TGG 0.208891 7_3:-31970438 None:intergenic
AACATCTTCACAACAGTTTC+TGG 0.211606 7_3:-31968487 None:intergenic
TGGATTCCATTGTCAGTTAT+TGG 0.212683 7_3:-31970418 None:intergenic
ATTTCAGCAAGTTGATTATT+AGG 0.225555 7_3:-31968607 None:intergenic
CCTACTTCTCCTACCAAAAT+TGG 0.271582 7_3:-31970514 None:intergenic
GTTGTTGATGTTAGGATTAA+TGG 0.274912 7_3:+31968396 Msa1101280:CDS
TAAAGGTACTGTTGCCTTTA+CGG 0.281687 7_3:-31970188 None:intergenic
TGCAACAACCTTGATGCTAA+TGG 0.283164 7_3:+31970937 Msa1101280:CDS
TTTCGGCGACACGCCAATTT+TGG 0.288643 7_3:+31970501 Msa1101280:CDS
AAGTTTCCGATGGATCTTTC+GGG 0.294935 7_3:+31970751 Msa1101280:CDS
GCTCTCAAATCGATCGGTTT+CGG 0.295941 7_3:+31970484 Msa1101280:CDS
TGGAAGGGCTTGGTGTAAAC+TGG 0.297579 7_3:+31968437 Msa1101280:CDS
ATTAACTTTGCTTGCACCTT+TGG 0.307246 7_3:+31970883 Msa1101280:CDS
TTCATCGAAGTTTATCTGTT+TGG 0.307651 7_3:+31970646 Msa1101280:CDS
TCTTATTGCATTGCCGGAAT+TGG 0.311120 7_3:-31970563 None:intergenic
GAGAGAGAAAGGAACGGTTT+TGG 0.313443 7_3:-31968272 None:intergenic
GTAGAATCTTATTGCATTGC+CGG 0.319258 7_3:-31970569 None:intergenic
GGGTAAATGTTGACAGTAAA+TGG 0.333092 7_3:-31970328 None:intergenic
TTCCATCTGCGGGAATATTT+CGG 0.334659 7_3:+31970248 Msa1101280:CDS
TTTACAATGTTGTTGATGTT+AGG 0.335818 7_3:+31968388 Msa1101280:CDS
AGACGGTGATAGTGATGAAA+TGG 0.342594 7_3:-31968180 None:intergenic
CAGATAAACTTCGATGAATC+CGG 0.350042 7_3:-31970641 None:intergenic
TTGTGAAGTTAGAGAGAGAA+AGG 0.352091 7_3:-31968283 None:intergenic
TTATAAACGTGCTCAATATT+GGG 0.352564 7_3:+31968636 Msa1101280:CDS
GTGAAGATGTTGAAGGATAA+TGG 0.352574 7_3:+31968499 Msa1101280:CDS
GTTACTCGTTATAACTTTGA+TGG 0.354819 7_3:+31968670 Msa1101280:CDS
TGTTGTTATGTGGAAGGGCT+TGG 0.368756 7_3:+31968427 Msa1101280:CDS
ATATAGACATCTGCGTTTAA+AGG 0.385672 7_3:-31970205 None:intergenic
GGTGACAAGAATGCCAATTC+CGG 0.398140 7_3:+31970550 Msa1101280:CDS
GAAGTTTCCGATGGATCTTT+CGG 0.401121 7_3:+31970750 Msa1101280:CDS
TTGCTGAGATCTTTAGCATC+AGG 0.401772 7_3:-31970847 None:intergenic
TTCCTTACTCCTTAGCCTCT+CGG 0.403727 7_3:+31968039 Msa1101280:five_prime_UTR
TTGTTGATGTTAGGATTAAT+GGG 0.405844 7_3:+31968397 Msa1101280:CDS
TCGAAGAAGGCGAAGTTGAA+TGG 0.408365 7_3:-31970382 None:intergenic
AGTCATGAGACCATTGATAT+CGG 0.412963 7_3:-31970272 None:intergenic
TCAACTTCGCCTTCTTCGAC+GGG 0.422981 7_3:+31970386 Msa1101280:CDS
TGAAGATGTTGAAGGATAAT+GGG 0.423140 7_3:+31968500 Msa1101280:CDS
CGATGAATCCGGGGCGGAGA+GGG 0.424811 7_3:-31970630 None:intergenic
TTCAACTTCGCCTTCTTCGA+CGG 0.430662 7_3:+31970385 Msa1101280:CDS
GACGATCCTGATTCTGCGTC+TGG 0.432976 7_3:-31970990 None:intergenic
GTACTACCAGACGCAGAATC+AGG 0.436349 7_3:+31970984 Msa1101280:CDS
ACCAAGACCAGCTTCATTGA+TGG 0.441196 7_3:-31970161 None:intergenic
AACCGAGAGGCTAAGGAGTA+AGG 0.446839 7_3:-31968041 None:intergenic
TTTATCTACCCCGTCGAAGA+AGG 0.451188 7_3:-31970395 None:intergenic
TCCGCAGATATGTAGCGGTT+GGG 0.453302 7_3:+31970062 Msa1101280:intron
TACCCCTTCTTAAGTCTCTA+CGG 0.454310 7_3:+31970346 Msa1101280:CDS
ATGCTGAAGAAGGAACTATC+TGG 0.458076 7_3:-31971086 None:intergenic
AGAGAGAAACCGAGAGGCTA+AGG 0.461912 7_3:-31968048 None:intergenic
CTTCAAAACAAACTTCTAGT+AGG 0.464131 7_3:+31970778 Msa1101280:CDS
GCATTCTTGTCACCTTCTGT+TGG 0.465889 7_3:-31970541 None:intergenic
GGTTTCAACATTTATTTGAC+CGG 0.468679 7_3:+31971215 Msa1101280:three_prime_UTR
AAGCATTTCCATTAGCATCA+AGG 0.472386 7_3:-31970945 None:intergenic
CGAAGAAGGCGAAGTTGAAT+GGG 0.474909 7_3:-31970381 None:intergenic
CAATCAAACAAACCAATTAG+AGG 0.475078 7_3:+31968079 Msa1101280:five_prime_UTR
TGATACCACAATGACTGCTT+TGG 0.475443 7_3:+31968552 Msa1101280:CDS
GACGGTGATAGTGATGAAAT+GGG 0.478927 7_3:-31968179 None:intergenic
TTCCGCAGATATGTAGCGGT+TGG 0.484860 7_3:+31970061 Msa1101280:intron
ACCCCTTCTTAAGTCTCTAC+GGG 0.484918 7_3:+31970347 Msa1101280:CDS
CAGTGTCTCTCAAAGTTACC+TGG 0.486453 7_3:-31970700 None:intergenic
GATTGTACTGCACTTGGGTA+TGG 0.490793 7_3:+31970907 Msa1101280:CDS
TGATGCAAATTTCGATACAT+TGG 0.491804 7_3:+31970456 Msa1101280:CDS
AAACAACAAAGCAGCAAATG+AGG 0.493412 7_3:-31971121 None:intergenic
TGGGGAATATTTCGATATGA+TGG 0.495745 7_3:+31970721 Msa1101280:CDS
TGTTCGCAGCGAGTCTAGAA+AGG 0.496041 7_3:-31970600 None:intergenic
GCCATCAATGAAGCTGGTCT+TGG 0.496624 7_3:+31970160 Msa1101280:CDS
AACGTGCTCAATATTGGGTT+AGG 0.498245 7_3:+31968641 Msa1101280:CDS
GTTGAAATGTTGTCTGTAGT+AGG 0.500081 7_3:-31971042 None:intergenic
ATGACTGCTTTGGCTGGTAG+TGG 0.501400 7_3:+31968562 Msa1101280:CDS
TGGTAGTGGAATTGAAGTTA+TGG 0.502034 7_3:+31968576 Msa1101280:CDS
TAAATAAACTAGATATCATC+CGG 0.514578 7_3:-31971234 None:intergenic
TTTGGAGATTGTACTGCACT+TGG 0.515034 7_3:+31970901 Msa1101280:CDS
GTCATGAGACCATTGATATC+GGG 0.521177 7_3:-31970271 None:intergenic
GTTTCTGCTCTCAAATCGAT+CGG 0.522943 7_3:+31970478 Msa1101280:CDS
CAAAATGCCATCAATGAAGC+TGG 0.527897 7_3:+31970154 Msa1101280:CDS
ACCACAATGACTGCTTTGGC+TGG 0.529623 7_3:+31968556 Msa1101280:CDS
ATCAAAGAAGATGCTGAAGA+AGG 0.530104 7_3:-31971096 None:intergenic
AGATAAACTTCGATGAATCC+GGG 0.532252 7_3:-31970640 None:intergenic
TGCTGAGATCTTTAGCATCA+GGG 0.538134 7_3:-31970846 None:intergenic
CAAACTTCTAGTAGGTGCAC+AGG 0.538210 7_3:+31970786 Msa1101280:CDS
GACAATCAAGTTCCATCTGC+GGG 0.539631 7_3:+31970238 Msa1101280:CDS
CAGGTAACTTTGAGAGACAC+TGG 0.539845 7_3:+31970701 Msa1101280:CDS
GATGAATCCGGGGCGGAGAG+GGG 0.546532 7_3:-31970629 None:intergenic
GACGCGAAGAGCATTGCTCC+AGG 0.552654 7_3:+31970682 Msa1101280:CDS
ATATTTCGGCCCGATATCAA+TGG 0.563489 7_3:+31970262 Msa1101280:CDS
TCGATGAATCCGGGGCGGAG+AGG 0.565244 7_3:-31970631 None:intergenic
TGGTCTTGGTGACTCCGTAA+AGG 0.565881 7_3:+31970174 Msa1101280:CDS
TTGGAGATTGTACTGCACTT+GGG 0.571116 7_3:+31970902 Msa1101280:CDS
AACTGTTGTGAAGATGTTGA+AGG 0.573217 7_3:+31968492 Msa1101280:CDS
GATAAACCAATAACTGACAA+TGG 0.575139 7_3:+31970412 Msa1101280:CDS
TCTAGACTCGCTGCGAACAA+AGG 0.575607 7_3:+31970604 Msa1101280:CDS
AAAGGAACCCCTCTCCGCCC+CGG 0.576993 7_3:+31970622 Msa1101280:CDS
GAAAGATCCATCGGAAACTT+CGG 0.579080 7_3:-31970748 None:intergenic
ATCACCGTCTTATTCATCGT+GGG 0.579244 7_3:+31968193 Msa1101280:five_prime_UTR
GAAGTAGGATGGCCAACAGA+AGG 0.581640 7_3:+31970529 Msa1101280:CDS
GGAAGGGCTTGGTGTAAACT+GGG 0.581663 7_3:+31968438 Msa1101280:CDS
AATGTTCTGCAGTGCAGGAA+AGG 0.584113 7_3:-31970131 None:intergenic
CAATGGTCTCATGACTCAGA+TGG 0.589085 7_3:+31970279 Msa1101280:CDS
AGGTAACTTTGAGAGACACT+GGG 0.591795 7_3:+31970702 Msa1101280:CDS
GTTCCCGTAGAGACTTAAGA+AGG 0.603438 7_3:-31970350 None:intergenic
AACAACAAAGCAGCAAATGA+GGG 0.604408 7_3:-31971120 None:intergenic
AAGTTAGAGAGAGAAAGGAA+CGG 0.614279 7_3:-31968278 None:intergenic
ACTCGTTATAACTTTGATGG+CGG 0.617236 7_3:+31968673 Msa1101280:CDS
GGGTTAAACATGCACCACAT+TGG 0.618943 7_3:-31970826 None:intergenic
TATCACCGTCTTATTCATCG+TGG 0.622354 7_3:+31968192 Msa1101280:five_prime_UTR
TGGATGATAAAATTGCAAGT+AGG 0.623501 7_3:-31971066 None:intergenic
TTCCCGTAGAGACTTAAGAA+GGG 0.632332 7_3:-31970349 None:intergenic
GTACAATTTCTCAACAAGAA+CGG 0.637978 7_3:+31970301 Msa1101280:CDS
ATCTTCACAACAGTTTCTGG+TGG 0.639053 7_3:-31968484 None:intergenic
ACCAGCCAAAGCAGTCATTG+TGG 0.643674 7_3:-31968557 None:intergenic
AGTTGACCCGAAAGATCCAT+CGG 0.649595 7_3:-31970757 None:intergenic
TCCCGTAGAGACTTAAGAAG+GGG 0.652260 7_3:-31970348 None:intergenic
AAGTGCAGTACAATCTCCAA+AGG 0.655496 7_3:-31970899 None:intergenic
TGGACAACCGAAGTTTCCGA+TGG 0.662375 7_3:+31970741 Msa1101280:CDS
AAACTTCTAGTAGGTGCACA+GGG 0.662815 7_3:+31970787 Msa1101280:CDS
GATGGAACTTGATTGTCCGA+CGG 0.668391 7_3:-31970232 None:intergenic
GGACAATCAAGTTCCATCTG+CGG 0.680371 7_3:+31970237 Msa1101280:CDS
TCTGTTTGGACTCATCGATG+AGG 0.680701 7_3:+31970660 Msa1101280:CDS
TCGCAGCGAGTCTAGAAAGG+AGG 0.683390 7_3:-31970597 None:intergenic
GATAAACTTCGATGAATCCG+GGG 0.689389 7_3:-31970639 None:intergenic
AATGCAATAAGATTCTACAA+TGG 0.690889 7_3:+31970574 Msa1101280:CDS
TGAAATATCTTGATCCAATG+TGG 0.694528 7_3:+31970812 Msa1101280:CDS
CAACTTCGCCTTCTTCGACG+GGG 0.696178 7_3:+31970387 Msa1101280:CDS
GAAACCCACGATGAATAAGA+CGG 0.707131 7_3:-31968197 None:intergenic
AGATGTCTATATGTCTCCGT+CGG 0.709419 7_3:+31970216 Msa1101280:CDS
AAACTTCGATGAATCCGGGG+CGG 0.742113 7_3:-31970636 None:intergenic
TCTGTCAGAGAGAAACCGAG+AGG 0.764418 7_3:-31968054 None:intergenic
GAAGGGCTTGGTGTAAACTG+GGG 0.765857 7_3:+31968439 Msa1101280:CDS
GGTAACTTTGAGAGACACTG+GGG 0.786507 7_3:+31970703 Msa1101280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTATTTTTGTC+AGG + chr7_3:31969011-31969030 Msa1101280:intron 10.0%
!!! TTTTATTTTTATTTTTGTCA+GGG + chr7_3:31969012-31969031 Msa1101280:intron 10.0%
!!! ATTTTTATTCGTTGAGTTTA+GGG + chr7_3:31968006-31968025 Msa1101280:five_prime_UTR 20.0%
!!! TTTGTTAGATTTTTGATTCA+TGG + chr7_3:31968977-31968996 Msa1101280:intron 20.0%
!! ATCATTATTATGAACACAAA+GGG - chr7_3:31969068-31969087 None:intergenic 20.0%
!! AATCATTATTATGAACACAA+AGG - chr7_3:31969069-31969088 None:intergenic 20.0%
!! ATAAAAGAATCTAATTCTGA+GGG - chr7_3:31969220-31969239 None:intergenic 20.0%
!! AATAAAAGAATCTAATTCTG+AGG - chr7_3:31969221-31969240 None:intergenic 20.0%
!!! TCAGAATTAGATTCTTTTAT+TGG + chr7_3:31969220-31969239 Msa1101280:intron 20.0%
!!! ATGTGCATATATCATATTTT+TGG + chr7_3:31969385-31969404 Msa1101280:intron 20.0%
!!! TATTTTTCACAATCAGAAAT+TGG - chr7_3:31969596-31969615 None:intergenic 20.0%
!!! CAAACTTGTAAATCATTTTA+GGG + chr7_3:31969826-31969845 Msa1101280:intron 20.0%
!! TTATTGTAAGCTTTCAAAAA+TGG - chr7_3:31970094-31970113 None:intergenic 20.0%
!! TAAATAAACTAGATATCATC+CGG - chr7_3:31971237-31971256 None:intergenic 20.0%
!! GATTTTTATTCGTTGAGTTT+AGG + chr7_3:31968005-31968024 Msa1101280:five_prime_UTR 25.0%
!!! AAAATGAAGAAGTTTTGTTG+GGG - chr7_3:31968341-31968360 None:intergenic 25.0%
!!! GAAAATGAAGAAGTTTTGTT+GGG - chr7_3:31968342-31968361 None:intergenic 25.0%
!!! TGAAAATGAAGAAGTTTTGT+TGG - chr7_3:31968343-31968362 None:intergenic 25.0%
! ATCTCACAATGGAAAAAAAT+TGG + chr7_3:31968362-31968381 Msa1101280:exon 25.0%
! TTTACAATGTTGTTGATGTT+AGG + chr7_3:31968388-31968407 Msa1101280:CDS 25.0%
! TTGTTGATGTTAGGATTAAT+GGG + chr7_3:31968397-31968416 Msa1101280:CDS 25.0%
!!! ATTTCAGCAAGTTGATTATT+AGG - chr7_3:31968610-31968629 None:intergenic 25.0%
! ATTATAAACGTGCTCAATAT+TGG + chr7_3:31968635-31968654 Msa1101280:CDS 25.0%
! TTATAAACGTGCTCAATATT+GGG + chr7_3:31968636-31968655 Msa1101280:CDS 25.0%
!!! AATTTTTCGAGATTTTGTGT+TGG + chr7_3:31968815-31968834 Msa1101280:intron 25.0%
!!! TAGATTTTTGATTCATGGTT+AGG + chr7_3:31968982-31969001 Msa1101280:intron 25.0%
!!! TGATTATGCATTTTGATTGA+TGG + chr7_3:31969090-31969109 Msa1101280:intron 25.0%
!!! AGTTGTTCTTGTTTTAATCA+AGG + chr7_3:31969172-31969191 Msa1101280:intron 25.0%
!! TTAGATTCTTTTATTGGTGT+TGG + chr7_3:31969226-31969245 Msa1101280:intron 25.0%
! AGAACAAATACATTATACCT+CGG - chr7_3:31969288-31969307 None:intergenic 25.0%
!! AATCATTTTACCATTCTAAG+AGG + chr7_3:31969311-31969330 Msa1101280:intron 25.0%
!!! GCATATATCATATTTTTGGA+AGG + chr7_3:31969389-31969408 Msa1101280:intron 25.0%
!!! TTTTTGGAAGGAAATGTTTT+TGG + chr7_3:31969401-31969420 Msa1101280:intron 25.0%
! TAAAATTTGTGATGCATTCT+TGG + chr7_3:31969519-31969538 Msa1101280:intron 25.0%
!! TCTTTTCATGATTTCATCAA+TGG + chr7_3:31969568-31969587 Msa1101280:intron 25.0%
!! GGATTTATTGAACATTTTGA+AGG + chr7_3:31969688-31969707 Msa1101280:intron 25.0%
!! GCAAACTTGTAAATCATTTT+AGG + chr7_3:31969825-31969844 Msa1101280:intron 25.0%
! GCACAAATTCACATTAAAAT+CGG - chr7_3:31970026-31970045 None:intergenic 25.0%
! AATGCAATAAGATTCTACAA+TGG + chr7_3:31970574-31970593 Msa1101280:CDS 25.0%
CAATCAAACAAACCAATTAG+AGG + chr7_3:31968079-31968098 Msa1101280:five_prime_UTR 30.0%
! GTTTCTTTTTGACCTCTAAT+TGG - chr7_3:31968094-31968113 None:intergenic 30.0%
! TCTTCATTTTCATCTCACAA+TGG + chr7_3:31968351-31968370 Msa1101280:exon 30.0%
GTTGTTGATGTTAGGATTAA+TGG + chr7_3:31968396-31968415 Msa1101280:CDS 30.0%
!!! TGTTTTTGTTGTTATGTGGA+AGG + chr7_3:31968421-31968440 Msa1101280:CDS 30.0%
!!! GTTTTTGTTGTTATGTGGAA+GGG + chr7_3:31968422-31968441 Msa1101280:CDS 30.0%
TGAAGATGTTGAAGGATAAT+GGG + chr7_3:31968500-31968519 Msa1101280:CDS 30.0%
GTTACTCGTTATAACTTTGA+TGG + chr7_3:31968670-31968689 Msa1101280:CDS 30.0%
!!! TTTTGATTGATGGTGAGTTT+TGG + chr7_3:31969100-31969119 Msa1101280:intron 30.0%
!!! TTTGATTGATGGTGAGTTTT+GGG + chr7_3:31969101-31969120 Msa1101280:intron 30.0%
! ATCAAGGAAGCTTTATGTAT+TGG + chr7_3:31969188-31969207 Msa1101280:intron 30.0%
! TCAAGGAAGCTTTATGTATT+GGG + chr7_3:31969189-31969208 Msa1101280:intron 30.0%
TGATATATGCACATACAAAC+AGG - chr7_3:31969379-31969398 None:intergenic 30.0%
TGATTGAGAGTTCATATAAC+AGG + chr7_3:31969463-31969482 Msa1101280:intron 30.0%
TTTGACAACACTAGGTTTAA+TGG + chr7_3:31969666-31969685 Msa1101280:intron 30.0%
TTGACAACACTAGGTTTAAT+GGG + chr7_3:31969667-31969686 Msa1101280:intron 30.0%
! TAGGGAATAATTTGTAATGC+TGG + chr7_3:31969844-31969863 Msa1101280:intron 30.0%
CATTAAAATCGGTCGAAATT+CGG - chr7_3:31970015-31970034 None:intergenic 30.0%
ATATAGACATCTGCGTTTAA+AGG - chr7_3:31970208-31970227 None:intergenic 30.0%
GTACAATTTCTCAACAAGAA+CGG + chr7_3:31970301-31970320 Msa1101280:CDS 30.0%
GATAAACCAATAACTGACAA+TGG + chr7_3:31970412-31970431 Msa1101280:CDS 30.0%
CATCAAAGACGTTAGTATAT+TGG - chr7_3:31970441-31970460 None:intergenic 30.0%
TGATGCAAATTTCGATACAT+TGG + chr7_3:31970456-31970475 Msa1101280:CDS 30.0%
TTCATCGAAGTTTATCTGTT+TGG + chr7_3:31970646-31970665 Msa1101280:CDS 30.0%
CTTCAAAACAAACTTCTAGT+AGG + chr7_3:31970778-31970797 Msa1101280:CDS 30.0%
TGAAATATCTTGATCCAATG+TGG + chr7_3:31970812-31970831 Msa1101280:CDS 30.0%
TGGATGATAAAATTGCAAGT+AGG - chr7_3:31971069-31971088 None:intergenic 30.0%
!!! TGCTTTTTCTGTGATTCTAT+TGG + chr7_3:31971146-31971165 Msa1101280:CDS 30.0%
GGTTTCAACATTTATTTGAC+CGG + chr7_3:31971215-31971234 Msa1101280:three_prime_UTR 30.0%
AAGTTAGAGAGAGAAAGGAA+CGG - chr7_3:31968281-31968300 None:intergenic 35.0%
TTGTGAAGTTAGAGAGAGAA+AGG - chr7_3:31968286-31968305 None:intergenic 35.0%
!!! GGGTTGTTTTTGTTGTTATG+TGG + chr7_3:31968417-31968436 Msa1101280:CDS 35.0%
AACATCTTCACAACAGTTTC+TGG - chr7_3:31968490-31968509 None:intergenic 35.0%
AACTGTTGTGAAGATGTTGA+AGG + chr7_3:31968492-31968511 Msa1101280:CDS 35.0%
GTGAAGATGTTGAAGGATAA+TGG + chr7_3:31968499-31968518 Msa1101280:CDS 35.0%
!! TGGTAGTGGAATTGAAGTTA+TGG + chr7_3:31968576-31968595 Msa1101280:CDS 35.0%
ACTCGTTATAACTTTGATGG+CGG + chr7_3:31968673-31968692 Msa1101280:CDS 35.0%
TGAAGCAAGCACATTATACA+AGG - chr7_3:31968859-31968878 None:intergenic 35.0%
GTATAATGTGCTTGCTTCAT+TGG + chr7_3:31968860-31968879 Msa1101280:intron 35.0%
CACAGAAAAAAGTTGCTACA+AGG - chr7_3:31969265-31969284 None:intergenic 35.0%
!!! TAAGAGGTGATTGCTGTTTT+AGG + chr7_3:31969327-31969346 Msa1101280:intron 35.0%
!!! AAGAGGTGATTGCTGTTTTA+GGG + chr7_3:31969328-31969347 Msa1101280:intron 35.0%
! CAGGAAATTTTGCATCAAGA+AGG + chr7_3:31969482-31969501 Msa1101280:intron 35.0%
! GCTCGTAGAGATTTTATTGA+TGG + chr7_3:31969543-31969562 Msa1101280:intron 35.0%
!!! CGTTGTTTTTGTCATTGGAT+TGG + chr7_3:31969885-31969904 Msa1101280:intron 35.0%
!! AAGATGGCATTGATGTGTTT+GGG - chr7_3:31969943-31969962 None:intergenic 35.0%
!! AAAGATGGCATTGATGTGTT+TGG - chr7_3:31969944-31969963 None:intergenic 35.0%
ACATCAATGCCATCTTTAGT+AGG + chr7_3:31969947-31969966 Msa1101280:intron 35.0%
CTAATGCTTCCTACTAAAGA+TGG - chr7_3:31969959-31969978 None:intergenic 35.0%
!! TAAAGGTACTGTTGCCTTTA+CGG - chr7_3:31970191-31970210 None:intergenic 35.0%
AGTCATGAGACCATTGATAT+CGG - chr7_3:31970275-31970294 None:intergenic 35.0%
GGGTAAATGTTGACAGTAAA+TGG - chr7_3:31970331-31970350 None:intergenic 35.0%
TGGATTCCATTGTCAGTTAT+TGG - chr7_3:31970421-31970440 None:intergenic 35.0%
GTAGAATCTTATTGCATTGC+CGG - chr7_3:31970572-31970591 None:intergenic 35.0%
AGATAAACTTCGATGAATCC+GGG - chr7_3:31970643-31970662 None:intergenic 35.0%
CAGATAAACTTCGATGAATC+CGG - chr7_3:31970644-31970663 None:intergenic 35.0%
TGGGGAATATTTCGATATGA+TGG + chr7_3:31970721-31970740 Msa1101280:CDS 35.0%
ATTAACTTTGCTTGCACCTT+TGG + chr7_3:31970883-31970902 Msa1101280:CDS 35.0%
AAGCATTTCCATTAGCATCA+AGG - chr7_3:31970948-31970967 None:intergenic 35.0%
GTTGAAATGTTGTCTGTAGT+AGG - chr7_3:31971045-31971064 None:intergenic 35.0%
ATCAAAGAAGATGCTGAAGA+AGG - chr7_3:31971099-31971118 None:intergenic 35.0%
AACAACAAAGCAGCAAATGA+GGG - chr7_3:31971123-31971142 None:intergenic 35.0%
AAACAACAAAGCAGCAAATG+AGG - chr7_3:31971124-31971143 None:intergenic 35.0%
! GAATTTTGCAGATTGAGAGT+TGG + chr7_3:31971264-31971283 Msa1101280:three_prime_UTR 35.0%
! GACGGTGATAGTGATGAAAT+GGG - chr7_3:31968182-31968201 None:intergenic 40.0%
! AGACGGTGATAGTGATGAAA+TGG - chr7_3:31968183-31968202 None:intergenic 40.0%
! TATCACCGTCTTATTCATCG+TGG + chr7_3:31968192-31968211 Msa1101280:five_prime_UTR 40.0%
! ATCACCGTCTTATTCATCGT+GGG + chr7_3:31968193-31968212 Msa1101280:five_prime_UTR 40.0%
GAAACCCACGATGAATAAGA+CGG - chr7_3:31968200-31968219 None:intergenic 40.0%
!!! AGTGGGTTTTGGAGATTAAG+CGG - chr7_3:31968250-31968269 None:intergenic 40.0%
!!! AAGGAACGGTTTTGGAAAGT+GGG - chr7_3:31968267-31968286 None:intergenic 40.0%
!!! AAAGGAACGGTTTTGGAAAG+TGG - chr7_3:31968268-31968287 None:intergenic 40.0%
! ATCTTCACAACAGTTTCTGG+TGG - chr7_3:31968487-31968506 None:intergenic 40.0%
TGATACCACAATGACTGCTT+TGG + chr7_3:31968552-31968571 Msa1101280:CDS 40.0%
AACGTGCTCAATATTGGGTT+AGG + chr7_3:31968641-31968660 Msa1101280:CDS 40.0%
!!! GTGAGTTTTGGGATCAAAGA+AGG + chr7_3:31969112-31969131 Msa1101280:intron 40.0%
ACAGCAATCACCTCTTAGAA+TGG - chr7_3:31969324-31969343 None:intergenic 40.0%
!!! AGAGGTGATTGCTGTTTTAG+GGG + chr7_3:31969329-31969348 Msa1101280:intron 40.0%
!!! CTGTTTTAGGGGAAGAGAAA+TGG + chr7_3:31969340-31969359 Msa1101280:intron 40.0%
ATGCACATACAAACAGGAGA+GGG - chr7_3:31969373-31969392 None:intergenic 40.0%
TATGCACATACAAACAGGAG+AGG - chr7_3:31969374-31969393 None:intergenic 40.0%
!!! TGGTTGCTTTTGACAACACT+AGG + chr7_3:31969658-31969677 Msa1101280:intron 40.0%
GTTCATCAAAGCTTACGATG+TGG - chr7_3:31969739-31969758 None:intergenic 40.0%
!!! TGTCGCGTTGTTTTTGTCAT+TGG + chr7_3:31969880-31969899 Msa1101280:intron 40.0%
!! GGATTGGTCAAACTCTCAAA+TGG + chr7_3:31969901-31969920 Msa1101280:intron 40.0%
TTGGTCAAACTCTCAAATGG+CGG + chr7_3:31969904-31969923 Msa1101280:intron 40.0%
!! AGATGGCATTGATGTGTTTG+GGG - chr7_3:31969942-31969961 None:intergenic 40.0%
! CTTTTTCCGCAGATATGTAG+CGG + chr7_3:31970057-31970076 Msa1101280:intron 40.0%
! TTTTGAATGTTCTGCAGTGC+AGG - chr7_3:31970139-31970158 None:intergenic 40.0%
CAAAATGCCATCAATGAAGC+TGG + chr7_3:31970154-31970173 Msa1101280:CDS 40.0%
AGATGTCTATATGTCTCCGT+CGG + chr7_3:31970216-31970235 Msa1101280:CDS 40.0%
TTCCATCTGCGGGAATATTT+CGG + chr7_3:31970248-31970267 Msa1101280:CDS 40.0%
ATATTTCGGCCCGATATCAA+TGG + chr7_3:31970262-31970281 Msa1101280:CDS 40.0%
GTCATGAGACCATTGATATC+GGG - chr7_3:31970274-31970293 None:intergenic 40.0%
TACCCCTTCTTAAGTCTCTA+CGG + chr7_3:31970346-31970365 Msa1101280:CDS 40.0%
TTCCCGTAGAGACTTAAGAA+GGG - chr7_3:31970352-31970371 None:intergenic 40.0%
GTTTCTGCTCTCAAATCGAT+CGG + chr7_3:31970478-31970497 Msa1101280:CDS 40.0%
CCTACTTCTCCTACCAAAAT+TGG - chr7_3:31970517-31970536 None:intergenic 40.0%
!! CCAATTTTGGTAGGAGAAGT+AGG + chr7_3:31970514-31970533 Msa1101280:CDS 40.0%
! TTTTGGTAGGAGAAGTAGGA+TGG + chr7_3:31970518-31970537 Msa1101280:CDS 40.0%
TCTTATTGCATTGCCGGAAT+TGG - chr7_3:31970566-31970585 None:intergenic 40.0%
GATAAACTTCGATGAATCCG+GGG - chr7_3:31970642-31970661 None:intergenic 40.0%
! AGGTAACTTTGAGAGACACT+GGG + chr7_3:31970702-31970721 Msa1101280:CDS 40.0%
GAAAGATCCATCGGAAACTT+CGG - chr7_3:31970751-31970770 None:intergenic 40.0%
GAAGTTTCCGATGGATCTTT+CGG + chr7_3:31970750-31970769 Msa1101280:CDS 40.0%
AAGTTTCCGATGGATCTTTC+GGG + chr7_3:31970751-31970770 Msa1101280:CDS 40.0%
AAACTTCTAGTAGGTGCACA+GGG + chr7_3:31970787-31970806 Msa1101280:CDS 40.0%
TGCTGAGATCTTTAGCATCA+GGG - chr7_3:31970849-31970868 None:intergenic 40.0%
TTGCTGAGATCTTTAGCATC+AGG - chr7_3:31970850-31970869 None:intergenic 40.0%
AAGTGCAGTACAATCTCCAA+AGG - chr7_3:31970902-31970921 None:intergenic 40.0%
TTTGGAGATTGTACTGCACT+TGG + chr7_3:31970901-31970920 Msa1101280:CDS 40.0%
TTGGAGATTGTACTGCACTT+GGG + chr7_3:31970902-31970921 Msa1101280:CDS 40.0%
TGCAACAACCTTGATGCTAA+TGG + chr7_3:31970937-31970956 Msa1101280:CDS 40.0%
! CGTCAAGCATGCAATTTTGA+AGG + chr7_3:31971009-31971028 Msa1101280:CDS 40.0%
ATGCTGAAGAAGGAACTATC+TGG - chr7_3:31971089-31971108 None:intergenic 40.0%
TTCCTTACTCCTTAGCCTCT+CGG + chr7_3:31968039-31968058 Msa1101280:five_prime_UTR 45.0%
!!! CGGTTTTGGAAAGTGGGTTT+TGG - chr7_3:31968261-31968280 None:intergenic 45.0%
! GAGAGAGAAAGGAACGGTTT+TGG - chr7_3:31968275-31968294 None:intergenic 45.0%
TGTTGTTATGTGGAAGGGCT+TGG + chr7_3:31968427-31968446 Msa1101280:CDS 45.0%
!!! AGCAACTTTTTTCTGTGCCG+AGG + chr7_3:31969268-31969287 Msa1101280:intron 45.0%
ACGCAAGCGCGTTTGTATAT+GGG + chr7_3:31969426-31969445 Msa1101280:intron 45.0%
AAATCGGTCGAAATTCGGCA+AGG - chr7_3:31970010-31970029 None:intergenic 45.0%
AATGTTCTGCAGTGCAGGAA+AGG - chr7_3:31970134-31970153 None:intergenic 45.0%
ACCAAGACCAGCTTCATTGA+TGG - chr7_3:31970164-31970183 None:intergenic 45.0%
GATGGAACTTGATTGTCCGA+CGG - chr7_3:31970235-31970254 None:intergenic 45.0%
GGACAATCAAGTTCCATCTG+CGG + chr7_3:31970237-31970256 Msa1101280:CDS 45.0%
GACAATCAAGTTCCATCTGC+GGG + chr7_3:31970238-31970257 Msa1101280:CDS 45.0%
CAATGGTCTCATGACTCAGA+TGG + chr7_3:31970279-31970298 Msa1101280:CDS 45.0%
ACCCCTTCTTAAGTCTCTAC+GGG + chr7_3:31970347-31970366 Msa1101280:CDS 45.0%
TCCCGTAGAGACTTAAGAAG+GGG - chr7_3:31970351-31970370 None:intergenic 45.0%
GTTCCCGTAGAGACTTAAGA+AGG - chr7_3:31970353-31970372 None:intergenic 45.0%
CGAAGAAGGCGAAGTTGAAT+GGG - chr7_3:31970384-31970403 None:intergenic 45.0%
TCGAAGAAGGCGAAGTTGAA+TGG - chr7_3:31970385-31970404 None:intergenic 45.0%
TTCAACTTCGCCTTCTTCGA+CGG + chr7_3:31970385-31970404 Msa1101280:CDS 45.0%
TTTATCTACCCCGTCGAAGA+AGG - chr7_3:31970398-31970417 None:intergenic 45.0%
! GCTCTCAAATCGATCGGTTT+CGG + chr7_3:31970484-31970503 Msa1101280:CDS 45.0%
GCATTCTTGTCACCTTCTGT+TGG - chr7_3:31970544-31970563 None:intergenic 45.0%
GGTGACAAGAATGCCAATTC+CGG + chr7_3:31970550-31970569 Msa1101280:CDS 45.0%
TCTGTTTGGACTCATCGATG+AGG + chr7_3:31970660-31970679 Msa1101280:CDS 45.0%
CAGTGTCTCTCAAAGTTACC+TGG - chr7_3:31970703-31970722 None:intergenic 45.0%
! CAGGTAACTTTGAGAGACAC+TGG + chr7_3:31970701-31970720 Msa1101280:CDS 45.0%
! GGTAACTTTGAGAGACACTG+GGG + chr7_3:31970703-31970722 Msa1101280:CDS 45.0%
AGTTGACCCGAAAGATCCAT+CGG - chr7_3:31970760-31970779 None:intergenic 45.0%
CAAACTTCTAGTAGGTGCAC+AGG + chr7_3:31970786-31970805 Msa1101280:CDS 45.0%
GGGTTAAACATGCACCACAT+TGG - chr7_3:31970829-31970848 None:intergenic 45.0%
GATTGTACTGCACTTGGGTA+TGG + chr7_3:31970907-31970926 Msa1101280:CDS 45.0%
!!! TGATATAATTTTTTTATTTA+AGG + chr7_3:31971194-31971213 Msa1101280:three_prime_UTR 5.0%
AACCGAGAGGCTAAGGAGTA+AGG - chr7_3:31968044-31968063 None:intergenic 50.0%
AGAGAGAAACCGAGAGGCTA+AGG - chr7_3:31968051-31968070 None:intergenic 50.0%
TCTGTCAGAGAGAAACCGAG+AGG - chr7_3:31968057-31968076 None:intergenic 50.0%
!! TGGAAGGGCTTGGTGTAAAC+TGG + chr7_3:31968437-31968456 Msa1101280:CDS 50.0%
!! GGAAGGGCTTGGTGTAAACT+GGG + chr7_3:31968438-31968457 Msa1101280:CDS 50.0%
!! GAAGGGCTTGGTGTAAACTG+GGG + chr7_3:31968439-31968458 Msa1101280:CDS 50.0%
ACCACAATGACTGCTTTGGC+TGG + chr7_3:31968556-31968575 Msa1101280:CDS 50.0%
ACCAGCCAAAGCAGTCATTG+TGG - chr7_3:31968560-31968579 None:intergenic 50.0%
ATGACTGCTTTGGCTGGTAG+TGG + chr7_3:31968562-31968581 Msa1101280:CDS 50.0%
CACGCAAGCGCGTTTGTATA+TGG + chr7_3:31969425-31969444 Msa1101280:intron 50.0%
TTCCGCAGATATGTAGCGGT+TGG + chr7_3:31970061-31970080 Msa1101280:intron 50.0%
TCCGCAGATATGTAGCGGTT+GGG + chr7_3:31970062-31970081 Msa1101280:intron 50.0%
TCCCAACCGCTACATATCTG+CGG - chr7_3:31970066-31970085 None:intergenic 50.0%
! GCCATCAATGAAGCTGGTCT+TGG + chr7_3:31970160-31970179 Msa1101280:CDS 50.0%
! TGGTCTTGGTGACTCCGTAA+AGG + chr7_3:31970174-31970193 Msa1101280:CDS 50.0%
TCAACTTCGCCTTCTTCGAC+GGG + chr7_3:31970386-31970405 Msa1101280:CDS 50.0%
! TTTCGGCGACACGCCAATTT+TGG + chr7_3:31970501-31970520 Msa1101280:CDS 50.0%
GAAGTAGGATGGCCAACAGA+AGG + chr7_3:31970529-31970548 Msa1101280:CDS 50.0%
TGTTCGCAGCGAGTCTAGAA+AGG - chr7_3:31970603-31970622 None:intergenic 50.0%
TCTAGACTCGCTGCGAACAA+AGG + chr7_3:31970604-31970623 Msa1101280:CDS 50.0%
AAACTTCGATGAATCCGGGG+CGG - chr7_3:31970639-31970658 None:intergenic 50.0%
TGGACAACCGAAGTTTCCGA+TGG + chr7_3:31970741-31970760 Msa1101280:CDS 50.0%
GTACTACCAGACGCAGAATC+AGG + chr7_3:31970984-31971003 Msa1101280:CDS 50.0%
GCGCAGCGCTACAACATAGT+GGG - chr7_3:31969633-31969652 None:intergenic 55.0%
AGCGCAGCGCTACAACATAG+TGG - chr7_3:31969634-31969653 None:intergenic 55.0%
GGCCGAAATATTCCCGCAGA+TGG - chr7_3:31970253-31970272 None:intergenic 55.0%
CAACTTCGCCTTCTTCGACG+GGG + chr7_3:31970387-31970406 Msa1101280:CDS 55.0%
!! GGCGACACGCCAATTTTGGT+AGG + chr7_3:31970505-31970524 Msa1101280:CDS 55.0%
TCGCAGCGAGTCTAGAAAGG+AGG - chr7_3:31970600-31970619 None:intergenic 55.0%
GACGATCCTGATTCTGCGTC+TGG - chr7_3:31970993-31971012 None:intergenic 55.0%
GTTGTAGCGCTGCGCTGCTA+TGG + chr7_3:31969638-31969657 Msa1101280:intron 60.0%
!! GACGCGAAGAGCATTGCTCC+AGG + chr7_3:31970682-31970701 Msa1101280:CDS 60.0%
AAAGGAACCCCTCTCCGCCC+CGG + chr7_3:31970622-31970641 Msa1101280:CDS 65.0%
GATGAATCCGGGGCGGAGAG+GGG - chr7_3:31970632-31970651 None:intergenic 65.0%
CGATGAATCCGGGGCGGAGA+GGG - chr7_3:31970633-31970652 None:intergenic 65.0%
TCGATGAATCCGGGGCGGAG+AGG - chr7_3:31970634-31970653 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 31967953 31971296 31967953 ID=Msa1101280;Name=Msa1101280
chr7_3 mRNA 31967953 31971296 31967953 ID=Msa1101280-mRNA-1;Parent=Msa1101280;Name=Msa1101280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=417|1|1|1|1|1|2|123|480
chr7_3 exon 31967953 31968707 31967953 ID=Msa1101280-mRNA-1:exon:6874;Parent=Msa1101280-mRNA-1
chr7_3 exon 31970069 31971296 31970069 ID=Msa1101280-mRNA-1:exon:6875;Parent=Msa1101280-mRNA-1
chr7_3 five_prime_UTR 31967953 31968369 31967953 ID=Msa1101280-mRNA-1:five_prime_utr;Parent=Msa1101280-mRNA-1
chr7_3 CDS 31968370 31968707 31968370 ID=Msa1101280-mRNA-1:cds;Parent=Msa1101280-mRNA-1
chr7_3 CDS 31970069 31971173 31970069 ID=Msa1101280-mRNA-1:cds;Parent=Msa1101280-mRNA-1
chr7_3 three_prime_UTR 31971174 31971296 31971174 ID=Msa1101280-mRNA-1:three_prime_utr;Parent=Msa1101280-mRNA-1
Gene Sequence

>Msa1101280

ATGGAAAAAAATTGGATTTTTACAATGTTGTTGATGTTAGGATTAATGGGTTGTTTTTGTTGTTATGTGGAAGGGCTTGGTGTAAACTGGGGCACACAAGCAACACACAAGTTACCACCAGAAACTGTTGTGAAGATGTTGAAGGATAATGGGATTCAAAAAGTTAAGCTTTTTGATGCAGATGATACCACAATGACTGCTTTGGCTGGTAGTGGAATTGAAGTTATGGTTGCTATTCCTAATAATCAACTTGCTGAAATGAATGATTATAAACGTGCTCAATATTGGGTTAGGAAGAATGTTACTCGTTATAACTTTGATGGCGGTGTTAAGATCAAATATGTAGCGGTTGGGAATGAGCCATTTTTGAAAGCTTACAATAATTCATTCTTGAACATCACCTTTCCTGCACTGCAGAACATTCAAAATGCCATCAATGAAGCTGGTCTTGGTGACTCCGTAAAGGCAACAGTACCTTTAAACGCAGATGTCTATATGTCTCCGTCGGACAATCAAGTTCCATCTGCGGGAATATTTCGGCCCGATATCAATGGTCTCATGACTCAGATGGTACAATTTCTCAACAAGAACGGAGCACCATTTACTGTCAACATTTACCCCTTCTTAAGTCTCTACGGGAACGACGATTTCCCATTCAACTTCGCCTTCTTCGACGGGGTAGATAAACCAATAACTGACAATGGAATCCAATATACTAACGTCTTTGATGCAAATTTCGATACATTGGTTTCTGCTCTCAAATCGATCGGTTTCGGCGACACGCCAATTTTGGTAGGAGAAGTAGGATGGCCAACAGAAGGTGACAAGAATGCCAATTCCGGCAATGCAATAAGATTCTACAATGGCCTCCTTTCTAGACTCGCTGCGAACAAAGGAACCCCTCTCCGCCCCGGATTCATCGAAGTTTATCTGTTTGGACTCATCGATGAGGACGCGAAGAGCATTGCTCCAGGTAACTTTGAGAGACACTGGGGAATATTTCGATATGATGGACAACCGAAGTTTCCGATGGATCTTTCGGGTCAACTTCAAAACAAACTTCTAGTAGGTGCACAGGGTGTGAAATATCTTGATCCAATGTGGTGCATGTTTAACCCTGATGCTAAAGATCTCAGCAAACTTGCTGATAACATTAACTTTGCTTGCACCTTTGGAGATTGTACTGCACTTGGGTATGGATCTTCTTGCAACAACCTTGATGCTAATGGAAATGCTTCTTATGCATTCAACATGTACTACCAGACGCAGAATCAGGATCGTCAAGCATGCAATTTTGAAGGTTTAGCTAAGCCTACTACAGACAACATTTCAACACCTACTTGCAATTTTATCATCCAGATAGTTCCTTCTTCAGCATCTTCTTTGATGCCCTCATTTGCTGCTTTGTTGTTTATTGCTTTTTCTGTGATTCTATTGGCTTAG
Protein sequence

>Msa1101280

MEKNWIFTMLLMLGLMGCFCCYVEGLGVNWGTQATHKLPPETVVKMLKDNGIQKVKLFDADDTTMTALAGSGIEVMVAIPNNQLAEMNDYKRAQYWVRKNVTRYNFDGGVKIKYVAVGNEPFLKAYNNSFLNITFPALQNIQNAINEAGLGDSVKATVPLNADVYMSPSDNQVPSAGIFRPDINGLMTQMVQFLNKNGAPFTVNIYPFLSLYGNDDFPFNFAFFDGVDKPITDNGIQYTNVFDANFDTLVSALKSIGFGDTPILVGEVGWPTEGDKNANSGNAIRFYNGLLSRLAANKGTPLRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQLQNKLLVGAQGVKYLDPMWCMFNPDAKDLSKLADNINFACTFGDCTALGYGSSCNNLDANGNASYAFNMYYQTQNQDRQACNFEGLAKPTTDNISTPTCNFIIQIVPSSASSLMPSFAALLFIAFSVILLA*