AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1158930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158930 MtrunA17_Chr7g0253781 99.869 763 1 0 1 763 1 763 0.0 1571
Msa1158930 MtrunA17_Chr6g0461111 86.745 762 101 0 1 762 1 762 0.0 1384
Msa1158930 MtrunA17_Chr3g0118901 84.321 759 119 0 4 762 52 810 0.0 1342
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158930 AT5G17920.2 87.927 762 92 0 1 762 1 762 0.0 1408
Msa1158930 AT5G17920.1 87.927 762 92 0 1 762 1 762 0.0 1408
Msa1158930 AT3G03780.1 85.696 762 109 0 1 762 1 762 0.0 1372
Msa1158930 AT3G03780.3 85.696 762 109 0 1 762 1 762 0.0 1372
Msa1158930 AT3G03780.2 85.696 762 109 0 1 762 1 762 0.0 1372
Msa1158930 AT5G20980.2 78.375 763 165 0 1 763 49 811 0.0 1271
Msa1158930 AT5G20980.1 78.375 763 165 0 1 763 49 811 0.0 1271

Find 251 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGGGGTAAAATGAAATTT+TGG 0.152282 7_4:+48358524 None:intergenic
CCAGATTGCTTTGGCTATTA+AGG 0.168335 7_4:-48359304 Msa1158930:CDS
AATAACTGTGTGCAATATTT+AGG 0.188710 7_4:-48358585 Msa1158930:three_prime_UTR
TTGAGTGGTGTCGCCGCTTA+TGG 0.211110 7_4:-48361249 Msa1158930:CDS
TTCACCTCGGGACCCAATTC+TGG 0.220600 7_4:+48362241 None:intergenic
AATTTGCTTTGGAATCATTC+TGG 0.250181 7_4:-48362658 Msa1158930:CDS
TCAAAGCAGCCTCATCAATT+TGG 0.261068 7_4:+48359241 None:intergenic
CATTCATTCCATCATTGATA+TGG 0.263056 7_4:-48358995 Msa1158930:CDS
CGTCAGTTGGTGGGATTCTT+GGG 0.264034 7_4:+48358857 None:intergenic
TTCCGTGAAGGAGTTGTTTA+TGG 0.264508 7_4:-48358916 Msa1158930:CDS
GTCAACTCCCTTGGCGGCTT+TGG 0.265173 7_4:+48361621 None:intergenic
CCCTCCTTAGTTCCACGGTC+TGG 0.268662 7_4:+48360143 None:intergenic
CATGATTATTTGCACAAAAC+TGG 0.282796 7_4:+48358435 None:intergenic
CCACTTTATTGTCCCAGAAT+TGG 0.283271 7_4:-48362254 Msa1158930:CDS
CCAATGAAGGGAATGCTTAC+TGG 0.290945 7_4:-48359517 Msa1158930:CDS
CTGGATTTCCCAGTGGAAAA+TGG 0.292476 7_4:-48361182 Msa1158930:CDS
TCGTCAGTTGGTGGGATTCT+TGG 0.294764 7_4:+48358856 None:intergenic
CTCTGCAAGTTCTGCAGCTC+AGG 0.318713 7_4:-48360431 Msa1158930:CDS
AGCAAATTTCAACTCTCTCT+TGG 0.323635 7_4:+48362673 None:intergenic
CACTTTATTGTCCCAGAATT+GGG 0.341529 7_4:-48362253 Msa1158930:CDS
GGCTTCTCTCAGTACATTAG+AGG 0.347630 7_4:-48361109 Msa1158930:CDS
GCATTGGCTAATGCACTTGC+AGG 0.348832 7_4:-48360842 Msa1158930:CDS
GAGAGAGTTGAAATTTGCTT+TGG 0.348888 7_4:-48362669 Msa1158930:CDS
CAGAAGACAGTCATTGCCTT+TGG 0.350697 7_4:+48359571 None:intergenic
AGAGTACATTAAGGCAATTA+AGG 0.356445 7_4:-48360002 Msa1158930:CDS
CAAAGGCAATGACTGTCTTC+TGG 0.357313 7_4:-48359570 Msa1158930:CDS
CCAGTAAGCATTCCCTTCAT+TGG 0.357787 7_4:+48359517 None:intergenic
AATCACCAATGTCGGTGTTC+AGG 0.357796 7_4:-48359151 Msa1158930:CDS
GGCTTCGCCTTTACTGCTAA+TGG 0.364303 7_4:-48359658 Msa1158930:CDS
GAGAGCAACAAGTATGAAAC+AGG 0.367592 7_4:+48361643 None:intergenic
ATCTTCTTCGCTTCTTGTTA+AGG 0.369718 7_4:+48363536 None:intergenic
CTTAACCTCTGTGTACTTAC+GGG 0.374221 7_4:+48358753 None:intergenic
GCTTAACCTCTGTGTACTTA+CGG 0.383228 7_4:+48358752 None:intergenic
CAGTAAGCATTCCCTTCATT+GGG 0.383689 7_4:+48359518 None:intergenic
CCTCCTTAGTTCCACGGTCT+GGG 0.391526 7_4:+48360144 None:intergenic
AAGCTCGTTACGGATTTGTT+TGG 0.391968 7_4:+48358702 None:intergenic
ATGATCCAATGGTGGTGGTT+GGG 0.395881 7_4:+48360170 None:intergenic
TCGTTGATGGAAGGAACATC+TGG 0.398500 7_4:-48361146 Msa1158930:CDS
GGAGGTTATTGCTGATCTTA+AGG 0.401153 7_4:-48361454 Msa1158930:CDS
ACTTCTTAGCCTTGAATTCA+CGG 0.402531 7_4:+48360116 None:intergenic
GGATGGACTGGTGGTGAGAT+TGG 0.403071 7_4:-48362464 Msa1158930:CDS
GTTGTTTATGGTGCTGGAAT+TGG 0.403152 7_4:-48358904 Msa1158930:CDS
TACTTTGGCGAGCAGTTGTC+AGG 0.403155 7_4:-48359679 Msa1158930:CDS
AGTGGAAAATGGATCTTTGC+TGG 0.403330 7_4:-48361171 Msa1158930:CDS
CCTCGGGCTCTCCGTGTACT+AGG 0.405131 7_4:+48359930 None:intergenic
GACACTGTTCCCGTTCTTGT+TGG 0.406603 7_4:-48361667 Msa1158930:CDS
ATCTTTGCTGGAGTCGTTGA+TGG 0.408358 7_4:-48361159 Msa1158930:CDS
AGCACGCTCACTACTTGGAC+TGG 0.412551 7_4:-48359191 Msa1158930:CDS
GTCAAGCCACCAATCATCTA+TGG 0.414314 7_4:-48359607 Msa1158930:CDS
GTCCGAGCACGCTCACTACT+TGG 0.414790 7_4:-48359196 Msa1158930:CDS
ATGGTGGTGGTTGGGAGGAT+TGG 0.414964 7_4:+48360178 None:intergenic
AAAATGGCTTCTCACATTGT+TGG 0.417361 7_4:-48362713 Msa1158930:CDS
AGAAGACAGTCATTGCCTTT+GGG 0.421292 7_4:+48359572 None:intergenic
CTTAATTTCATCATCCAACT+TGG 0.422844 7_4:+48360907 None:intergenic
GTTCTGCAGCTCAGGCTTCA+AGG 0.423524 7_4:-48360423 Msa1158930:CDS
CTGATCTAAGAGCATCAATC+TGG 0.424387 7_4:-48362595 Msa1158930:CDS
ATTTGCTTTGGAATCATTCT+GGG 0.424933 7_4:-48362657 Msa1158930:CDS
TTCACTTGGCAAGCTCGTTA+CGG 0.424936 7_4:+48358692 None:intergenic
CAGTGCCGAGGATTTGAAGA+AGG 0.427889 7_4:-48362624 Msa1158930:CDS
GCAAATTTCAACTCTCTCTT+GGG 0.427892 7_4:+48362674 None:intergenic
TGATGAACCCACACTTGTCC+TGG 0.428099 7_4:-48361406 Msa1158930:CDS
ACTCTTGATTTGATCAAGGC+TGG 0.428427 7_4:-48361201 Msa1158930:CDS
GCCCTGTCACCATTCTCAAC+TGG 0.432386 7_4:-48359495 Msa1158930:CDS
CATTCCCTTCATTGGGCGCT+TGG 0.433045 7_4:+48359525 None:intergenic
ATTGCTGATCTTAAGGCTGC+TGG 0.434244 7_4:-48361447 Msa1158930:CDS
CTCCGAGGAAGAGTACATTA+AGG 0.440393 7_4:-48360011 Msa1158930:CDS
GAGGCTCTTGCCGGCATTGT+GGG 0.441484 7_4:-48361090 Msa1158930:CDS
TCGCCTTTACTGCTAATGGA+TGG 0.442946 7_4:-48359654 Msa1158930:CDS
AGAGGCTCTTGCCGGCATTG+TGG 0.443385 7_4:-48361091 Msa1158930:CDS
CGCCTTTACTGCTAATGGAT+GGG 0.444739 7_4:-48359653 Msa1158930:CDS
AATGATATGGTTGAGTACTT+TGG 0.446026 7_4:-48359694 Msa1158930:CDS
CCTTAATAGCCAAAGCAATC+TGG 0.448275 7_4:+48359304 None:intergenic
GAAACAGGGCCAACAAGAAC+GGG 0.453352 7_4:+48361658 None:intergenic
CTTGTAGACGGCAAGGACCT+TGG 0.453971 7_4:+48361570 None:intergenic
GAGGGTTCGCCGTGAATTCA+AGG 0.455640 7_4:-48360125 Msa1158930:CDS
TTGTAGACGGCAAGGACCTT+GGG 0.455997 7_4:+48361571 None:intergenic
CCACGATGTGACAATATCCT+TGG 0.456510 7_4:+48358354 None:intergenic
CACCCATCCATTAGCAGTAA+AGG 0.457339 7_4:+48359651 None:intergenic
ATCTGTTTGATTTACACAAA+AGG 0.459878 7_4:-48358632 Msa1158930:three_prime_UTR
CACCATAAACAACTCCTTCA+CGG 0.461766 7_4:+48358914 None:intergenic
GGACCTTGGGAAGCAAAGAT+AGG 0.467226 7_4:+48361584 None:intergenic
AGTAAGTAAAAGTGTTGCTT+GGG 0.467361 7_4:+48362540 None:intergenic
GCCACGGATACAGAGACATT+TGG 0.467926 7_4:+48358490 None:intergenic
TAAGACTCTTGATTTGATCA+AGG 0.473829 7_4:-48361205 Msa1158930:CDS
CTTTACCAAGCGCCCAATGA+AGG 0.474796 7_4:-48359530 Msa1158930:CDS
ACCACCAGTCCATCCATACC+TGG 0.475259 7_4:+48362472 None:intergenic
ATCCTCCCAACCACCACCAT+TGG 0.476001 7_4:-48360175 Msa1158930:CDS
TAATGCCACCGTCCCTGCTA+TGG 0.476367 7_4:-48362411 Msa1158930:CDS
ATGAATGATGTCGTTGAAGT+TGG 0.478731 7_4:+48359011 None:intergenic
AAAGGATTTGTCAACTCCCT+TGG 0.479781 7_4:+48361612 None:intergenic
TGTAGAAATAAACTTATAAG+AGG 0.480421 7_4:-48358275 Msa1158930:three_prime_UTR
TGCAGAACTTGCAGAGAAGA+TGG 0.480429 7_4:+48360438 None:intergenic
TATGGTGCTGGAATTGGCCC+TGG 0.480835 7_4:-48358898 Msa1158930:CDS
TCACCTCGGGACCCAATTCT+GGG 0.481128 7_4:+48362242 None:intergenic
ATCAGCATCCATATCAATGA+TGG 0.484383 7_4:+48358987 None:intergenic
AACGAGCTTGCCAAGTGAAA+AGG 0.486521 7_4:-48358688 Msa1158930:exon
TCTCCTATCTTTGCTTCCCA+AGG 0.486549 7_4:-48361587 Msa1158930:CDS
GCAACCATGTTGAGGAGGGC+AGG 0.486565 7_4:+48358730 None:intergenic
ACAGCCTCGTTAGTCACTCT+TGG 0.488254 7_4:+48360391 None:intergenic
ACTTGTGAGCTTCAAGATCC+AGG 0.488502 7_4:+48361388 None:intergenic
CAAGGCTGTTGAAGAATACA+AGG 0.493097 7_4:-48362200 Msa1158930:CDS
GAAGGAGTTGTTTATGGTGC+TGG 0.493441 7_4:-48358910 Msa1158930:CDS
TGCCTTAATGTACTCTTCCT+CGG 0.493586 7_4:+48360009 None:intergenic
TTGGTGGGATTCTTGGGGAG+TGG 0.493782 7_4:+48358863 None:intergenic
GTCCAAGTAGTGAGCGTGCT+CGG 0.494016 7_4:+48359194 None:intergenic
AATGATCCAATGGTGGTGGT+TGG 0.497627 7_4:+48360169 None:intergenic
CTCACATCACCATAGATGAT+TGG 0.497831 7_4:+48359598 None:intergenic
AATACCTTTGCCCACAATGC+CGG 0.498196 7_4:+48361080 None:intergenic
GTGAAGAAGTGAGCAGGAAG+TGG 0.504910 7_4:+48360955 None:intergenic
TTAAACTTCTTACTTGTAGA+CGG 0.506307 7_4:+48361558 None:intergenic
AATGGATGGGTGCAATCCTA+TGG 0.506434 7_4:-48359640 Msa1158930:CDS
TAGTAAGTAAAAGTGTTGCT+TGG 0.508330 7_4:+48362539 None:intergenic
AGTACATTAGAGGCTCTTGC+CGG 0.509775 7_4:-48361099 Msa1158930:CDS
CACTTGGTCATCTCCATAGC+AGG 0.511355 7_4:+48362398 None:intergenic
GGATTTGTCAACTCCCTTGG+CGG 0.513440 7_4:+48361615 None:intergenic
TGCAATATCAATAAAGATTG+TGG 0.516704 7_4:+48358463 None:intergenic
CTAGTTGGTGTCGAACCACT+TGG 0.518118 7_4:+48362382 None:intergenic
AGCCAAAGCAATCTGGTAGC+AGG 0.519856 7_4:+48359311 None:intergenic
TTGCCAAGTGAAAAGGTTGA+AGG 0.520263 7_4:-48358681 Msa1158930:exon
GACCTTGAGAAAGGTGGTAT+TGG 0.521585 7_4:-48359270 Msa1158930:CDS
AGCAGTGTGAAGAAGTGAGC+AGG 0.525551 7_4:+48360949 None:intergenic
TCGGCGATCTCGTCAGTTGG+TGG 0.525621 7_4:+48358847 None:intergenic
CCGTTCCACCCAGGTATGGA+TGG 0.526113 7_4:-48362481 Msa1158930:CDS
GGGTGGAACGGCGCCGAGAG+TGG 0.527072 7_4:+48362493 None:intergenic
GACCAGTTGAGAATGGTGAC+AGG 0.532128 7_4:+48359493 None:intergenic
AGTTGTTGAAGTAAATGCAT+TGG 0.532315 7_4:-48360858 Msa1158930:CDS
GACCTGCTACCAGATTGCTT+TGG 0.533114 7_4:-48359313 Msa1158930:CDS
CTCCTTAGTTCCACGGTCTG+GGG 0.533778 7_4:+48360145 None:intergenic
GATGAGGCTGCTTTGAGAGA+GGG 0.534990 7_4:-48359234 Msa1158930:CDS
GTTTCACGCCATGGTTTCCA+AGG 0.535227 7_4:-48358371 Msa1158930:three_prime_UTR
TATGGATTTGATTTAGTCCG+TGG 0.537748 7_4:-48361231 Msa1158930:CDS
GGAAACAGATGTCTGATGTT+GGG 0.538478 7_4:-48362574 Msa1158930:CDS
TCCAAATGTCTCTGTATCCG+TGG 0.540894 7_4:-48358491 Msa1158930:three_prime_UTR
GTTGCTCTCCAAAGCCGCCA+AGG 0.542973 7_4:-48361629 Msa1158930:CDS
AGGGTCTTGTATGCCTCAGC+GGG 0.543065 7_4:+48361279 None:intergenic
TGAAACAGGGCCAACAAGAA+CGG 0.543972 7_4:+48361657 None:intergenic
ACATGGAGACCTTCAAAAGA+AGG 0.544230 7_4:+48361330 None:intergenic
TGGAAACAGATGTCTGATGT+TGG 0.545584 7_4:-48362575 Msa1158930:CDS
AACGAAGGACCAGTTGAGAA+TGG 0.550417 7_4:+48359486 None:intergenic
TTTCAGGCTGCTGCATTGAA+GGG 0.550475 7_4:-48360268 Msa1158930:intron
CGGCGATCTCGTCAGTTGGT+GGG 0.551989 7_4:+48358848 None:intergenic
GGGGAATGATCCAATGGTGG+TGG 0.552050 7_4:+48360165 None:intergenic
CTCACTTCTTCACACTGCTG+TGG 0.553458 7_4:-48360945 Msa1158930:CDS
TTGTCACATCGTGGTTTGCA+AGG 0.553611 7_4:-48358345 Msa1158930:three_prime_UTR
CCCACAAAACGTTCTTCTCA+AGG 0.553901 7_4:+48358800 None:intergenic
TCGTTAGAGTTGACCAGCCT+AGG 0.554706 7_4:-48359468 Msa1158930:intron
TGTGGGTCAACCCTGACTGT+GGG 0.554903 7_4:-48358783 Msa1158930:CDS
TTGTGGGTCAACCCTGACTG+TGG 0.555145 7_4:-48358784 Msa1158930:CDS
CATTGTTGGATACCCTCGTA+TGG 0.555284 7_4:-48362699 Msa1158930:CDS
GACTAACGAGGCTGTTCAGA+AGG 0.555699 7_4:-48360383 Msa1158930:CDS
CCACCCAGGTATGGATGGAC+TGG 0.557087 7_4:-48362476 Msa1158930:CDS
TTGCTGGAGTCGTTGATGGA+AGG 0.557997 7_4:-48361155 Msa1158930:CDS
CTTGCCGGCATTGTGGGCAA+AGG 0.558431 7_4:-48361084 Msa1158930:intron
TTGCTCTCCAAAGCCGCCAA+GGG 0.567535 7_4:-48361628 Msa1158930:CDS
TGCAGCAACCATGTTGAGGA+GGG 0.567910 7_4:+48358726 None:intergenic
GTGCTACTAATGTCAGTGCC+AGG 0.568192 7_4:-48360231 Msa1158930:CDS
GAAGTTGAAGACCTTGAGAA+AGG 0.568559 7_4:-48359279 Msa1158930:CDS
ACCTTTCGGTGTTAGTGTAG+AGG 0.570135 7_4:+48363494 None:intergenic
AGGCTGGTCAACTCTAACGA+AGG 0.572648 7_4:+48359471 None:intergenic
CTGTCGGCGATCTCGTCAGT+TGG 0.575748 7_4:+48358844 None:intergenic
GAGTACACAAAGTTCACCTC+GGG 0.576283 7_4:+48362229 None:intergenic
TTATACATAGTTTCACGCCA+TGG 0.577403 7_4:-48358380 Msa1158930:three_prime_UTR
ACATCACCATAGATGATTGG+TGG 0.578253 7_4:+48359601 None:intergenic
AGAAACCTTCTTCAAATCCT+CGG 0.579553 7_4:+48362619 None:intergenic
CTCTCGGCGCCGTTCCACCC+AGG 0.582006 7_4:-48362490 Msa1158930:CDS
TCTCTCTTGGGTCCCATACG+AGG 0.582372 7_4:+48362686 None:intergenic
CATCTGGGCAAATGATCTTG+AGG 0.583442 7_4:-48361130 Msa1158930:CDS
TCCTTAGTTCCACGGTCTGG+GGG 0.584719 7_4:+48360146 None:intergenic
TTTGCAAGGATATTGTTGAA+AGG 0.585081 7_4:-48358331 Msa1158930:three_prime_UTR
GTCAGTTGGTGGGATTCTTG+GGG 0.585834 7_4:+48358858 None:intergenic
CTGCAGCAACCATGTTGAGG+AGG 0.586019 7_4:+48358725 None:intergenic
GCACGCTCACTACTTGGACT+GGG 0.587006 7_4:-48359190 Msa1158930:CDS
AATCAAGAGTCTTAGTTCCA+CGG 0.587307 7_4:+48361214 None:intergenic
TGATGAGGCTGCTTTGAGAG+AGG 0.587396 7_4:-48359235 Msa1158930:CDS
CCATCCATACCTGGGTGGAA+CGG 0.587440 7_4:+48362481 None:intergenic
AGCGGGAATATCAGCGAAGT+AGG 0.587569 7_4:+48361296 None:intergenic
CCAATTCTGGGACAATAAAG+TGG 0.587631 7_4:+48362254 None:intergenic
TTCAAGATCCAGGACAAGTG+TGG 0.587633 7_4:+48361398 None:intergenic
CTTTGTGTACTCTTCTCACA+AGG 0.588250 7_4:-48362218 Msa1158930:CDS
TGGAACGGCGCCGAGAGTGG+CGG 0.589325 7_4:+48362496 None:intergenic
CATTGGTGATTCTGAAGGAG+TGG 0.589827 7_4:+48359163 None:intergenic
ACTTGCAGGCAACAAGGATG+AGG 0.590756 7_4:-48360828 Msa1158930:intron
TTTACCAAGCGCCCAATGAA+GGG 0.590785 7_4:-48359529 Msa1158930:CDS
TCCTTCAGAATCACCAATGT+CGG 0.592425 7_4:-48359159 Msa1158930:CDS
GGTCGAGTTTATACCTAGGC+TGG 0.592475 7_4:+48359455 None:intergenic
CACCAATACCACCTTTCTCA+AGG 0.596575 7_4:+48359268 None:intergenic
TCCTCTACACTAACACCGAA+AGG 0.597221 7_4:-48363495 Msa1158930:intron
AAGCAAAGATAGGAGATCAA+AGG 0.597361 7_4:+48361594 None:intergenic
GGAGTCCTGAACACCGACAT+TGG 0.602532 7_4:+48359146 None:intergenic
TCTTGTTAATGAGACCAAGT+TGG 0.604220 7_4:-48360921 Msa1158930:CDS
CTTGACACAACGAGATCCAT+AGG 0.604689 7_4:+48359624 None:intergenic
ATCCAATGGTGGTGGTTGGG+AGG 0.606015 7_4:+48360173 None:intergenic
TGGATGATGAAATTAAGTCA+TGG 0.607380 7_4:-48360901 Msa1158930:CDS
TGACATTAGTAGCACGGCGA+TGG 0.607809 7_4:+48360239 None:intergenic
GCGAACCCTCCTTAGTTCCA+CGG 0.608505 7_4:+48360138 None:intergenic
TAATGCACTTGCAGGCAACA+AGG 0.608842 7_4:-48360834 Msa1158930:CDS
GAGTGGATGTCATACACACC+AGG 0.609608 7_4:+48358880 None:intergenic
CCAGACCGTGGAACTAAGGA+GGG 0.610455 7_4:-48360143 Msa1158930:CDS
CAACTGACGAGATCGCCGAC+AGG 0.610689 7_4:-48358843 Msa1158930:CDS
CTCGTTAGTCACTCTTGGAG+AGG 0.610883 7_4:+48360396 None:intergenic
TGGCTGCAGCAACCATGTTG+AGG 0.611356 7_4:+48358722 None:intergenic
CTTGATACTACCGCCACTCT+CGG 0.616148 7_4:-48362506 Msa1158930:CDS
TAAAGATTGTGGCAGAGCCA+CGG 0.616622 7_4:+48358474 None:intergenic
AGACAGTCATTGCCTTTGGG+CGG 0.616757 7_4:+48359575 None:intergenic
CGTTGATGGAAGGAACATCT+GGG 0.617267 7_4:-48361145 Msa1158930:CDS
AAGCATCTTGTTGATCCTGT+CGG 0.618740 7_4:+48358828 None:intergenic
GGTCATCTCCATAGCAGGGA+CGG 0.618946 7_4:+48362403 None:intergenic
TCAAGATCCAGGACAAGTGT+GGG 0.621194 7_4:+48361399 None:intergenic
CTCTCTTGGGTCCCATACGA+GGG 0.622388 7_4:+48362687 None:intergenic
ATTGTTGGATACCCTCGTAT+GGG 0.623364 7_4:-48362698 Msa1158930:CDS
CTTCTTACTTGTAGACGGCA+AGG 0.623727 7_4:+48361563 None:intergenic
TGTCCCAGAATTGGGTCCCG+AGG 0.624259 7_4:-48362245 Msa1158930:CDS
ACCGACATTGGTGATTCTGA+AGG 0.624679 7_4:+48359158 None:intergenic
GACTAAATCAAATCCATAAG+CGG 0.625920 7_4:+48361236 None:intergenic
GACAATATCCTTGGAAACCA+TGG 0.626077 7_4:+48358363 None:intergenic
GTACATTAAGGCAATTAAGG+AGG 0.627912 7_4:-48359999 Msa1158930:CDS
CCCAGGTATGGATGGACTGG+TGG 0.629978 7_4:-48362473 Msa1158930:CDS
AGTAGGTCTCAACAAGAACA+TGG 0.630158 7_4:+48361313 None:intergenic
CTTCTATCAGTCTTCCGTGA+AGG 0.630174 7_4:-48358928 Msa1158930:CDS
TAAGCCTGCCCTCCTCAACA+TGG 0.632365 7_4:-48358734 Msa1158930:CDS
GTTGAAGACCTTGAGAAAGG+TGG 0.637199 7_4:-48359276 Msa1158930:CDS
GACACCACTCAAAGATGTGA+GGG 0.637443 7_4:+48361260 None:intergenic
GATATTGATGTCCTAGTACA+CGG 0.639077 7_4:-48359941 Msa1158930:CDS
TGGTGATGTGAGCCGCCCAA+AGG 0.639821 7_4:-48359587 Msa1158930:CDS
CGACACCACTCAAAGATGTG+AGG 0.643850 7_4:+48361259 None:intergenic
CGGTGTTCAGGACTCCACCC+AGG 0.645289 7_4:-48359139 Msa1158930:intron
ACCAGTTGAGAATGGTGACA+GGG 0.646821 7_4:+48359494 None:intergenic
TGGAGTAGCACATGTGAGTG+TGG 0.647254 7_4:+48359031 None:intergenic
TGAAGAATACAAGGAAGCCA+AGG 0.648603 7_4:-48362191 Msa1158930:CDS
CCAAGGATATTGTCACATCG+TGG 0.649111 7_4:-48358354 Msa1158930:three_prime_UTR
CTTCGCTGATATTCCCGCTG+AGG 0.651444 7_4:-48361292 Msa1158930:CDS
TGGCACTGACATTAGTAGCA+CGG 0.651735 7_4:+48360233 None:intergenic
ATCAAGGCTGGATTTCCCAG+TGG 0.656695 7_4:-48361189 Msa1158930:CDS
GAGGGTCTTGTATGCCTCAG+CGG 0.658058 7_4:+48361278 None:intergenic
CCACCAGTCCATCCATACCT+GGG 0.661096 7_4:+48362473 None:intergenic
ACTTGGTCATCTCCATAGCA+GGG 0.665945 7_4:+48362399 None:intergenic
AGAGTACACAAAGTTCACCT+CGG 0.672545 7_4:+48362228 None:intergenic
CATCTCCATAGCAGGGACGG+TGG 0.675302 7_4:+48362406 None:intergenic
TACTAATGTCAGTGCCAGGT+TGG 0.676683 7_4:-48360227 Msa1158930:CDS
TGGTGTCATCCAAATTGATG+AGG 0.682603 7_4:-48359250 Msa1158930:CDS
GCGTGCTCGGACTTCCTCAG+TGG 0.686114 7_4:+48359207 None:intergenic
AAGACCCTCACATCTTTGAG+TGG 0.695040 7_4:-48361264 Msa1158930:CDS
CTTGAAGCTCAACAACTGAG+CGG 0.697886 7_4:+48359972 None:intergenic
AGAATACAAGGAAGCCAAGG+CGG 0.708610 7_4:-48362188 Msa1158930:intron
CTGCTATGGAGATGACCAAG+TGG 0.713786 7_4:-48362397 Msa1158930:CDS
CTCTCCAAGAGTGACTAACG+AGG 0.723815 7_4:-48360395 Msa1158930:CDS
CCAGTCCATCCATACCTGGG+TGG 0.730069 7_4:+48362476 None:intergenic
AGAGCAACAAGTATGAAACA+GGG 0.741881 7_4:+48361644 None:intergenic
AGTGGATGTCATACACACCA+GGG 0.742744 7_4:+48358881 None:intergenic
GTGAGCCAAACATACCTGGG+TGG 0.772714 7_4:+48359125 None:intergenic
TGAGAGAGGGACTACCACTG+AGG 0.777373 7_4:-48359221 Msa1158930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATGATTATGATTAA+GGG + chr7_4:48358421-48358440 None:intergenic 10.0%
!! TTAACAAAATTAAATAAATC+CGG + chr7_4:48361981-48362000 None:intergenic 10.0%
!! TTATTATGATTATGATTAAG+GGG + chr7_4:48358420-48358439 None:intergenic 15.0%
!! GATTATTATGATTATGATTA+AGG + chr7_4:48358422-48358441 None:intergenic 15.0%
!! TTAATTAAATAGTTAACTAG+AGG + chr7_4:48358852-48358871 None:intergenic 15.0%
!!! AATATTATCAGTTTTATTAG+TGG - chr7_4:48358943-48358962 Msa1158930:CDS 15.0%
!!! ATATTATCAGTTTTATTAGT+GGG - chr7_4:48358944-48358963 Msa1158930:CDS 15.0%
!!! ATTTGATTTATACAGAAAAA+TGG - chr7_4:48359092-48359111 Msa1158930:intron 15.0%
!!! TGACATTTTTAATTAGATTT+GGG - chr7_4:48359817-48359836 Msa1158930:intron 15.0%
!!! TAAGAAGTTTAAATTGTTTT+GGG - chr7_4:48360274-48360293 Msa1158930:intron 15.0%
!! AATTAAGTAAATTCAAGTAT+TGG - chr7_4:48361158-48361177 Msa1158930:CDS 15.0%
!!! TGTCAATAGTTTTTTTTTTT+GGG - chr7_4:48361256-48361275 Msa1158930:CDS 15.0%
!!! TTTTTAACCTTTATGATAAA+AGG - chr7_4:48361283-48361302 Msa1158930:CDS 15.0%
!! TAACAAAATTAAATAAATCC+GGG + chr7_4:48361980-48361999 None:intergenic 15.0%
!!! GAAATTTTATTATAACATGT+AGG + chr7_4:48362758-48362777 None:intergenic 15.0%
!!! AAAAGGATAATTTTCTATTT+TGG - chr7_4:48363206-48363225 Msa1158930:intron 15.0%
!! TATTATGATTATGATTAAGG+GGG + chr7_4:48358419-48358438 None:intergenic 20.0%
!! ATGATTATGTTCAAAATTGT+TGG + chr7_4:48358645-48358664 None:intergenic 20.0%
!!! TTATTTTTTTGTTGAAAGCT+CGG + chr7_4:48359014-48359033 None:intergenic 20.0%
!!! GTGACATTTTTAATTAGATT+TGG - chr7_4:48359816-48359835 Msa1158930:intron 20.0%
!!! GTAAGAAGTTTAAATTGTTT+TGG - chr7_4:48360273-48360292 Msa1158930:intron 20.0%
!!! AAGAAGTTTAAATTGTTTTG+GGG - chr7_4:48360275-48360294 Msa1158930:intron 20.0%
!! TTATTGAACATTCATTACAT+TGG - chr7_4:48360763-48360782 Msa1158930:intron 20.0%
!!! ATTTACTTCAACAACTTTTT+GGG + chr7_4:48360959-48360978 None:intergenic 20.0%
!!! ACACTTGTTAATACTATTAT+AGG + chr7_4:48361187-48361206 None:intergenic 20.0%
!!! GTGTCAATAGTTTTTTTTTT+TGG - chr7_4:48361255-48361274 Msa1158930:CDS 20.0%
!!! TATAGAACCTTTTATCATAA+AGG + chr7_4:48361293-48361312 None:intergenic 20.0%
!!! TCACTTAGTTAATGTTTTTA+TGG - chr7_4:48361347-48361366 Msa1158930:CDS 20.0%
!!! TAATACTCGTTTTGTTTATT+TGG - chr7_4:48361493-48361512 Msa1158930:intron 20.0%
!! AATAAAACAAGAGTCAATAA+AGG + chr7_4:48361784-48361803 None:intergenic 20.0%
!! TGTAGAAATAAACTTATAAG+AGG - chr7_4:48363546-48363565 Msa1158930:five_prime_UTR 20.0%
!! ATTTTCAGATTCAGATCTAA+TGG + chr7_4:48358563-48358582 None:intergenic 25.0%
! GTGTGAATTAACGAAAATTA+TGG + chr7_4:48358616-48358635 None:intergenic 25.0%
! ACGAGTAAAACTAATTGAAT+TGG + chr7_4:48358718-48358737 None:intergenic 25.0%
! AATAGTTAACTAGAGGATTA+AGG + chr7_4:48358845-48358864 None:intergenic 25.0%
!!! GATTTTGTTGTTATTGTTGT+TGG - chr7_4:48359052-48359071 Msa1158930:intron 25.0%
!!! ATTCGATACTTACTTTTCAA+TGG - chr7_4:48359380-48359399 Msa1158930:intron 25.0%
!!! TGACATTTTTAACTAGATCT+AGG - chr7_4:48359770-48359789 Msa1158930:intron 25.0%
!!! ATTTTTAACTAGATCTAGGT+TGG - chr7_4:48359774-48359793 Msa1158930:intron 25.0%
!!! TTGGTTTTTGTTGTTGTTTT+TGG - chr7_4:48359904-48359923 Msa1158930:intron 25.0%
!!! TGGTTTTTGTTGTTGTTTTT+GGG - chr7_4:48359905-48359924 Msa1158930:intron 25.0%
! TTAAACTTCTTACTTGTAGA+CGG + chr7_4:48360266-48360285 None:intergenic 25.0%
!!! AGAAGTTTAAATTGTTTTGG+GGG - chr7_4:48360276-48360295 Msa1158930:intron 25.0%
!! CATTTACTTCAACAACTTTT+TGG + chr7_4:48360960-48360979 None:intergenic 25.0%
! AATTATGTGGTGAAATAAAC+AGG + chr7_4:48361328-48361347 None:intergenic 25.0%
! CATTAACTAAGTGAATTATG+TGG + chr7_4:48361341-48361360 None:intergenic 25.0%
!! GTTTTTATGGTTTCATTTTC+AGG - chr7_4:48361360-48361379 Msa1158930:CDS 25.0%
!!! TATTGACTCTTGTTTTATTC+AGG - chr7_4:48361785-48361804 Msa1158930:intron 25.0%
!! AATTAGTTGGAAGTACAATT+GGG + chr7_4:48362081-48362100 None:intergenic 25.0%
! CAGCATTCATATCATATATT+TGG - chr7_4:48362446-48362465 Msa1158930:CDS 25.0%
!! ATCTGTTTGATTTACACAAA+AGG - chr7_4:48363189-48363208 Msa1158930:intron 25.0%
! AATAACTGTGTGCAATATTT+AGG - chr7_4:48363236-48363255 Msa1158930:intron 25.0%
!!! TAAAATGAAATTTTGGGAGA+GGG + chr7_4:48363293-48363312 None:intergenic 25.0%
! ATTTGGAAAAACAGAAAAGT+GGG + chr7_4:48363317-48363336 None:intergenic 25.0%
! TGCAATATCAATAAAGATTG+TGG + chr7_4:48363361-48363380 None:intergenic 25.0%
! CTAATTGAATTGGAGTTGAT+TGG + chr7_4:48358708-48358727 None:intergenic 30.0%
TGTGAATTTAACGAACATGA+AGG + chr7_4:48358776-48358795 None:intergenic 30.0%
! TTCAAGATCGAGTACATTTT+AGG - chr7_4:48358803-48358822 Msa1158930:CDS 30.0%
!! AATTTGCTTTGGAATCATTC+TGG - chr7_4:48359163-48359182 Msa1158930:CDS 30.0%
!! ATTTGCTTTGGAATCATTCT+GGG - chr7_4:48359164-48359183 Msa1158930:CDS 30.0%
!! AGTAAGTAAAAGTGTTGCTT+GGG + chr7_4:48359284-48359303 None:intergenic 30.0%
!! TAGTAAGTAAAAGTGTTGCT+TGG + chr7_4:48359285-48359304 None:intergenic 30.0%
!! CTAGGTTGGAGTTTTTAATT+AGG - chr7_4:48359788-48359807 Msa1158930:intron 30.0%
!! GTTGGAGTTTTTAATTAGGA+GGG - chr7_4:48359792-48359811 Msa1158930:intron 30.0%
!!! GATTGTTAGTTTGTCCTTTT+TGG - chr7_4:48359972-48359991 Msa1158930:CDS 30.0%
!!! TTAGTTTGTCCTTTTTGGTA+TGG - chr7_4:48359977-48359996 Msa1158930:CDS 30.0%
TAACAAGAACCATACCAAAA+AGG + chr7_4:48359989-48360008 None:intergenic 30.0%
!!! TTTTGATTTGTCTTACAGCT+TGG - chr7_4:48360127-48360146 Msa1158930:CDS 30.0%
!! TTGCTTTTAACTACTAATGC+AGG - chr7_4:48360345-48360364 Msa1158930:intron 30.0%
!! TGCTTTTAACTACTAATGCA+GGG - chr7_4:48360346-48360365 Msa1158930:intron 30.0%
GACTAAATCAAATCCATAAG+CGG + chr7_4:48360588-48360607 None:intergenic 30.0%
! TAAGACTCTTGATTTGATCA+AGG - chr7_4:48360616-48360635 Msa1158930:intron 30.0%
CTTAATTTCATCATCCAACT+TGG + chr7_4:48360917-48360936 None:intergenic 30.0%
TGGATGATGAAATTAAGTCA+TGG - chr7_4:48360920-48360939 Msa1158930:CDS 30.0%
AGTTGTTGAAGTAAATGCAT+TGG - chr7_4:48360963-48360982 Msa1158930:CDS 30.0%
GTGAGATGAAATGAAAGAAA+TGG + chr7_4:48361025-48361044 None:intergenic 30.0%
AAAACGAGTATTAGAACAGA+GGG + chr7_4:48361486-48361505 None:intergenic 30.0%
!!! GTTTTGTTTATTTGGATCTG+TGG - chr7_4:48361501-48361520 Msa1158930:intron 30.0%
! ACCCTTTCTATTCAATTTTC+AGG - chr7_4:48361537-48361556 Msa1158930:intron 30.0%
GCCTGAAAATTGAATAGAAA+GGG + chr7_4:48361541-48361560 None:intergenic 30.0%
AGCCTGAAAATTGAATAGAA+AGG + chr7_4:48361542-48361561 None:intergenic 30.0%
AGAGTACATTAAGGCAATTA+AGG - chr7_4:48361819-48361838 Msa1158930:intron 30.0%
TGCTTCAATTGACTAAAAGA+AGG + chr7_4:48361940-48361959 None:intergenic 30.0%
!! AAAGATAGCTTTATTACACC+CGG - chr7_4:48361959-48361978 Msa1158930:intron 30.0%
! AACATCAAGGGCATAAAATA+TGG + chr7_4:48362046-48362065 None:intergenic 30.0%
! CAATTAGTTGGAAGTACAAT+TGG + chr7_4:48362082-48362101 None:intergenic 30.0%
ATTGTACTTCCAACTAATTG+TGG - chr7_4:48362082-48362101 Msa1158930:intron 30.0%
ATTCCTCTGCATAAAAAAAG+AGG + chr7_4:48362110-48362129 None:intergenic 30.0%
! TTTTATGCAGAGGAATGATA+TGG - chr7_4:48362114-48362133 Msa1158930:intron 30.0%
AATGATATGGTTGAGTACTT+TGG - chr7_4:48362127-48362146 Msa1158930:intron 30.0%
CATTCATTCCATCATTGATA+TGG - chr7_4:48362826-48362845 Msa1158930:intron 30.0%
!! AAAATGAAATTTTGGGAGAG+GGG + chr7_4:48363292-48363311 None:intergenic 30.0%
!! GTAAAATGAAATTTTGGGAG+AGG + chr7_4:48363294-48363313 None:intergenic 30.0%
! GTGGGGTAAAATGAAATTTT+GGG + chr7_4:48363299-48363318 None:intergenic 30.0%
! AGTGGGGTAAAATGAAATTT+TGG + chr7_4:48363300-48363319 None:intergenic 30.0%
TTTGGAAAAACAGAAAAGTG+GGG + chr7_4:48363316-48363335 None:intergenic 30.0%
CATTTGGAAAAACAGAAAAG+TGG + chr7_4:48363318-48363337 None:intergenic 30.0%
CATGATTATTTGCACAAAAC+TGG + chr7_4:48363389-48363408 None:intergenic 30.0%
!! CAATTCGCTATTTTCAAATG+CGG - chr7_4:48363416-48363435 Msa1158930:intron 30.0%
TTTGCAAGGATATTGTTGAA+AGG - chr7_4:48363490-48363509 Msa1158930:intron 30.0%
ATCTTCTTCGCTTCTTGTTA+AGG + chr7_4:48358288-48358307 None:intergenic 35.0%
ATGATTATGATTAAGGGGGA+AGG + chr7_4:48358415-48358434 None:intergenic 35.0%
AGTGTTCTTGTTAGGTTTAG+CGG + chr7_4:48358507-48358526 None:intergenic 35.0%
!! GAACTAAGAGTGTTCTTGTT+AGG + chr7_4:48358515-48358534 None:intergenic 35.0%
! AATTGGAGTTGATTGGAGTA+TGG + chr7_4:48358701-48358720 None:intergenic 35.0%
GGATTAAGGAATAAGCAACT+AGG + chr7_4:48358831-48358850 None:intergenic 35.0%
AAAATGGCTTCTCACATTGT+TGG - chr7_4:48359108-48359127 Msa1158930:intron 35.0%
GCAAATTTCAACTCTCTCTT+GGG + chr7_4:48359150-48359169 None:intergenic 35.0%
AGCAAATTTCAACTCTCTCT+TGG + chr7_4:48359151-48359170 None:intergenic 35.0%
! GAGAGAGTTGAAATTTGCTT+TGG - chr7_4:48359152-48359171 Msa1158930:CDS 35.0%
AGAAACCTTCTTCAAATCCT+CGG + chr7_4:48359205-48359224 None:intergenic 35.0%
!! ACTTACTTTTCAATGGCTAG+AGG - chr7_4:48359387-48359406 Msa1158930:intron 35.0%
TTTGATGAGTTAGTGACTCT+GGG - chr7_4:48359495-48359514 Msa1158930:CDS 35.0%
CACTTTATTGTCCCAGAATT+GGG - chr7_4:48359568-48359587 Msa1158930:CDS 35.0%
!!! CGTTTTGTTTTTGCTTATGC+AGG - chr7_4:48359669-48359688 Msa1158930:CDS 35.0%
!! AAATGTTAGCTTTGTTAGCC+TGG - chr7_4:48359695-48359714 Msa1158930:CDS 35.0%
!! ATGTCATTGGGAAGTATTGT+TGG - chr7_4:48359722-48359741 Msa1158930:intron 35.0%
!! TGTCATTGGGAAGTATTGTT+GGG - chr7_4:48359723-48359742 Msa1158930:intron 35.0%
!! GGTTGGAGTTTTTAATTAGG+AGG - chr7_4:48359791-48359810 Msa1158930:intron 35.0%
TAGCTTCACTTAGTGGAATA+AGG - chr7_4:48359880-48359899 Msa1158930:intron 35.0%
GAGTTTGAAAGATCTTTGGT+TGG - chr7_4:48359929-48359948 Msa1158930:intron 35.0%
TTTGAAAGATCTTTGGTTGG+TGG - chr7_4:48359932-48359951 Msa1158930:CDS 35.0%
TTGAAAGATCTTTGGTTGGT+GGG - chr7_4:48359933-48359952 Msa1158930:CDS 35.0%
TCTACTATAATAGACCACAC+AGG + chr7_4:48360059-48360078 None:intergenic 35.0%
AGAGCAACAAGTATGAAACA+GGG + chr7_4:48360180-48360199 None:intergenic 35.0%
AAGCAAAGATAGGAGATCAA+AGG + chr7_4:48360230-48360249 None:intergenic 35.0%
!! TTTTAACTACTAATGCAGGG+AGG - chr7_4:48360349-48360368 Msa1158930:intron 35.0%
! TATGGATTTGATTTAGTCCG+TGG - chr7_4:48360590-48360609 Msa1158930:intron 35.0%
AATCAAGAGTCTTAGTTCCA+CGG + chr7_4:48360610-48360629 None:intergenic 35.0%
ACGTTTACTTCAAAGACTCT+TGG + chr7_4:48360794-48360813 None:intergenic 35.0%
TCTTGTTAATGAGACCAAGT+TGG - chr7_4:48360900-48360919 Msa1158930:CDS 35.0%
CAAAACGAGTATTAGAACAG+AGG + chr7_4:48361487-48361506 None:intergenic 35.0%
!! ACTTCTTAGCCTTGAATTCA+CGG + chr7_4:48361708-48361727 None:intergenic 35.0%
GTACATTAAGGCAATTAAGG+AGG - chr7_4:48361822-48361841 Msa1158930:intron 35.0%
GATATTGATGTCCTAGTACA+CGG - chr7_4:48361880-48361899 Msa1158930:intron 35.0%
GTTTCTCTTCAAAACAGAAG+AGG + chr7_4:48362015-48362034 None:intergenic 35.0%
AATCGGCAATCTAACATCAA+GGG + chr7_4:48362058-48362077 None:intergenic 35.0%
! TTGGAAGTACAATTGGGAAT+CGG + chr7_4:48362075-48362094 None:intergenic 35.0%
AAAGAGGATCCACAATTAGT+TGG + chr7_4:48362094-48362113 None:intergenic 35.0%
!!! GATCCTCTTTTTTTATGCAG+AGG - chr7_4:48362104-48362123 Msa1158930:intron 35.0%
! TTTTCCTGTGATGTTACAAG+GGG + chr7_4:48362394-48362413 None:intergenic 35.0%
! CTTTTCCTGTGATGTTACAA+GGG + chr7_4:48362395-48362414 None:intergenic 35.0%
! ACTTTTCCTGTGATGTTACA+AGG + chr7_4:48362396-48362415 None:intergenic 35.0%
AACATGTAGGCAAATAGAGA+AGG + chr7_4:48362745-48362764 None:intergenic 35.0%
ATGAATGATGTCGTTGAAGT+TGG + chr7_4:48362813-48362832 None:intergenic 35.0%
ATCAGCATCCATATCAATGA+TGG + chr7_4:48362837-48362856 None:intergenic 35.0%
! TTTCCTTCAACCTTTTCACT+TGG + chr7_4:48363146-48363165 None:intergenic 35.0%
!! AAATGAAATTTTGGGAGAGG+GGG + chr7_4:48363291-48363310 None:intergenic 35.0%
TTATACATAGTTTCACGCCA+TGG - chr7_4:48363441-48363460 Msa1158930:intron 35.0%
AGAGTCTCATACGAACCTTT+CGG + chr7_4:48358344-48358363 None:intergenic 40.0%
AAAGGGAAGGACGTAAAAGA+GGG + chr7_4:48358376-48358395 None:intergenic 40.0%
AAAAGGGAAGGACGTAAAAG+AGG + chr7_4:48358377-48358396 None:intergenic 40.0%
GAAAATGGGTAGACGGAAAA+GGG + chr7_4:48358393-48358412 None:intergenic 40.0%
GATTAAGGGGGAAGGAAAAT+GGG + chr7_4:48358407-48358426 None:intergenic 40.0%
TGATTAAGGGGGAAGGAAAA+TGG + chr7_4:48358408-48358427 None:intergenic 40.0%
ATTGTTGGATACCCTCGTAT+GGG - chr7_4:48359123-48359142 Msa1158930:intron 40.0%
!! CTGATCTAAGAGCATCAATC+TGG - chr7_4:48359226-48359245 Msa1158930:CDS 40.0%
TGGAAACAGATGTCTGATGT+TGG - chr7_4:48359246-48359265 Msa1158930:CDS 40.0%
GGAAACAGATGTCTGATGTT+GGG - chr7_4:48359247-48359266 Msa1158930:CDS 40.0%
GTTTGATGAGTTAGTGACTC+TGG - chr7_4:48359494-48359513 Msa1158930:CDS 40.0%
!! CCAATTCTGGGACAATAAAG+TGG + chr7_4:48359570-48359589 None:intergenic 40.0%
CCACTTTATTGTCCCAGAAT+TGG - chr7_4:48359567-48359586 Msa1158930:CDS 40.0%
AGAGTACACAAAGTTCACCT+CGG + chr7_4:48359596-48359615 None:intergenic 40.0%
CTTTGTGTACTCTTCTCACA+AGG - chr7_4:48359603-48359622 Msa1158930:CDS 40.0%
CAAGGCTGTTGAAGAATACA+AGG - chr7_4:48359621-48359640 Msa1158930:CDS 40.0%
TGAAGAATACAAGGAAGCCA+AGG - chr7_4:48359630-48359649 Msa1158930:CDS 40.0%
GAAAAAAACACATACCGCCT+TGG + chr7_4:48359650-48359669 None:intergenic 40.0%
TTAGCCTGGCTTAATGTCAT+TGG - chr7_4:48359709-48359728 Msa1158930:intron 40.0%
TAGCCTGGCTTAATGTCATT+GGG - chr7_4:48359710-48359729 Msa1158930:intron 40.0%
GGGATCGAGTTTGAACATTA+TGG - chr7_4:48359837-48359856 Msa1158930:intron 40.0%
ACTAAGTGAAGCTAGCTACA+TGG + chr7_4:48359874-48359893 None:intergenic 40.0%
! ATGTAGCTAGCTTCACTTAG+TGG - chr7_4:48359873-48359892 Msa1158930:intron 40.0%
TCACTTAGTGGAATAAGGCT+TGG - chr7_4:48359885-48359904 Msa1158930:intron 40.0%
GGGTGAGTTTGAAAGATCTT+TGG - chr7_4:48359925-48359944 Msa1158930:intron 40.0%
TTCTGTTATGTTCACCTGTG+TGG - chr7_4:48360042-48360061 Msa1158930:intron 40.0%
GAGAGCAACAAGTATGAAAC+AGG + chr7_4:48360181-48360200 None:intergenic 40.0%
AAAGGATTTGTCAACTCCCT+TGG + chr7_4:48360212-48360231 None:intergenic 40.0%
GGAGGTTATTGCTGATCTTA+AGG - chr7_4:48360367-48360386 Msa1158930:intron 40.0%
! GCACTTACACCTTCTTTTGA+AGG - chr7_4:48360482-48360501 Msa1158930:intron 40.0%
ACATGGAGACCTTCAAAAGA+AGG + chr7_4:48360494-48360513 None:intergenic 40.0%
AGTAGGTCTCAACAAGAACA+TGG + chr7_4:48360511-48360530 None:intergenic 40.0%
! ACTCTTGATTTGATCAAGGC+TGG - chr7_4:48360620-48360639 Msa1158930:intron 40.0%
! GCAAAGATCCATTTTCCACT+GGG + chr7_4:48360650-48360669 None:intergenic 40.0%
! AGCAAAGATCCATTTTCCAC+TGG + chr7_4:48360651-48360670 None:intergenic 40.0%
AGTGGAAAATGGATCTTTGC+TGG - chr7_4:48360650-48360669 Msa1158930:intron 40.0%
TTTCTTAGCTGCAGACATTG+TGG - chr7_4:48361082-48361101 Msa1158930:intron 40.0%
CATCAGACAATTGTTAGCAG+TGG - chr7_4:48361216-48361235 Msa1158930:CDS 40.0%
!! TGTTTTATTCAGGATCTCCG+AGG - chr7_4:48361795-48361814 Msa1158930:intron 40.0%
TGCCTTAATGTACTCTTCCT+CGG + chr7_4:48361815-48361834 None:intergenic 40.0%
AGATGATTAAAGCTGACCTC+GGG + chr7_4:48361910-48361929 None:intergenic 40.0%
GAGATGATTAAAGCTGACCT+CGG + chr7_4:48361911-48361930 None:intergenic 40.0%
TCTCTTCAAAACAGAAGAGG+CGG + chr7_4:48362012-48362031 None:intergenic 40.0%
GAATCGGCAATCTAACATCA+AGG + chr7_4:48362059-48362078 None:intergenic 40.0%
ACATCACCATAGATGATTGG+TGG + chr7_4:48362223-48362242 None:intergenic 40.0%
CTCACATCACCATAGATGAT+TGG + chr7_4:48362226-48362245 None:intergenic 40.0%
AGAAGACAGTCATTGCCTTT+GGG + chr7_4:48362252-48362271 None:intergenic 40.0%
CAGTAAGCATTCCCTTCATT+GGG + chr7_4:48362306-48362325 None:intergenic 40.0%
TTTCCTGTGATGTTACAAGG+GGG + chr7_4:48362393-48362412 None:intergenic 40.0%
CCTTAATAGCCAAAGCAATC+TGG + chr7_4:48362520-48362539 None:intergenic 40.0%
CCAGATTGCTTTGGCTATTA+AGG - chr7_4:48362517-48362536 Msa1158930:CDS 40.0%
GAAGTTGAAGACCTTGAGAA+AGG - chr7_4:48362542-48362561 Msa1158930:CDS 40.0%
!! TGGTGTCATCCAAATTGATG+AGG - chr7_4:48362571-48362590 Msa1158930:CDS 40.0%
TCAAAGCAGCCTCATCAATT+TGG + chr7_4:48362583-48362602 None:intergenic 40.0%
TCCTTCAGAATCACCAATGT+CGG - chr7_4:48362662-48362681 Msa1158930:CDS 40.0%
! ATAGAAGCTTTTCGTCGGAA+CGG + chr7_4:48362880-48362899 None:intergenic 40.0%
! GACTGATAGAAGCTTTTCGT+CGG + chr7_4:48362885-48362904 None:intergenic 40.0%
TTCCGTGAAGGAGTTGTTTA+TGG - chr7_4:48362905-48362924 Msa1158930:intron 40.0%
CACCATAAACAACTCCTTCA+CGG + chr7_4:48362910-48362929 None:intergenic 40.0%
! GTTGTTTATGGTGCTGGAAT+TGG - chr7_4:48362917-48362936 Msa1158930:intron 40.0%
AAGCATCTTGTTGATCCTGT+CGG + chr7_4:48362996-48363015 None:intergenic 40.0%
! TCCTTGAGAAGAACGTTTTG+TGG - chr7_4:48363020-48363039 Msa1158930:intron 40.0%
! CCTTGAGAAGAACGTTTTGT+GGG - chr7_4:48363021-48363040 Msa1158930:intron 40.0%
AAAAACCCGTAAGTACACAG+AGG - chr7_4:48363063-48363082 Msa1158930:intron 40.0%
CTTAACCTCTGTGTACTTAC+GGG + chr7_4:48363071-48363090 None:intergenic 40.0%
GCTTAACCTCTGTGTACTTA+CGG + chr7_4:48363072-48363091 None:intergenic 40.0%
! AAGCTCGTTACGGATTTGTT+TGG + chr7_4:48363122-48363141 None:intergenic 40.0%
TTGCCAAGTGAAAAGGTTGA+AGG - chr7_4:48363140-48363159 Msa1158930:intron 40.0%
GACAATATCCTTGGAAACCA+TGG + chr7_4:48363461-48363480 None:intergenic 40.0%
TCCTCTACACTAACACCGAA+AGG - chr7_4:48358326-48358345 Msa1158930:intron 45.0%
!! ACCTTTCGGTGTTAGTGTAG+AGG + chr7_4:48358330-48358349 None:intergenic 45.0%
GGAAAATGGGTAGACGGAAA+AGG + chr7_4:48358394-48358413 None:intergenic 45.0%
GTTCTTGTTAGGTTTAGCGG+TGG + chr7_4:48358504-48358523 None:intergenic 45.0%
TCGCGATCCACTAGATTAGT+CGG - chr7_4:48358973-48358992 Msa1158930:CDS 45.0%
AAGCTCGGTATCAGACCTAA+GGG + chr7_4:48358999-48359018 None:intergenic 45.0%
AAAGCTCGGTATCAGACCTA+AGG + chr7_4:48359000-48359019 None:intergenic 45.0%
CATTGTTGGATACCCTCGTA+TGG - chr7_4:48359122-48359141 Msa1158930:intron 45.0%
ACTTGGTCATCTCCATAGCA+GGG + chr7_4:48359425-48359444 None:intergenic 45.0%
CATCGCAGTCACTTACTAGT+TGG + chr7_4:48359457-48359476 None:intergenic 45.0%
! GACTCTGGGTTGTATTGATC+TGG - chr7_4:48359509-48359528 Msa1158930:CDS 45.0%
GAGTACACAAAGTTCACCTC+GGG + chr7_4:48359595-48359614 None:intergenic 45.0%
AGAATACAAGGAAGCCAAGG+CGG - chr7_4:48359633-48359652 Msa1158930:CDS 45.0%
CTTCCCAATGACATTAAGCC+AGG + chr7_4:48359716-48359735 None:intergenic 45.0%
ACTGTTGCCAAGTGAATGCT+TGG - chr7_4:48360009-48360028 Msa1158930:CDS 45.0%
TACTCTGCCAAGCATTCACT+TGG + chr7_4:48360019-48360038 None:intergenic 45.0%
TGAAACAGGGCCAACAAGAA+CGG + chr7_4:48360167-48360186 None:intergenic 45.0%
TCTCCTATCTTTGCTTCCCA+AGG - chr7_4:48360234-48360253 Msa1158930:CDS 45.0%
CTTCTTACTTGTAGACGGCA+AGG + chr7_4:48360261-48360280 None:intergenic 45.0%
ATTGCTGATCTTAAGGCTGC+TGG - chr7_4:48360374-48360393 Msa1158930:intron 45.0%
TCAAGATCCAGGACAAGTGT+GGG + chr7_4:48360425-48360444 None:intergenic 45.0%
TTCAAGATCCAGGACAAGTG+TGG + chr7_4:48360426-48360445 None:intergenic 45.0%
ACTTGTGAGCTTCAAGATCC+AGG + chr7_4:48360436-48360455 None:intergenic 45.0%
AAGACCCTCACATCTTTGAG+TGG - chr7_4:48360557-48360576 Msa1158930:intron 45.0%
GACACCACTCAAAGATGTGA+GGG + chr7_4:48360564-48360583 None:intergenic 45.0%
CTGGATTTCCCAGTGGAAAA+TGG - chr7_4:48360639-48360658 Msa1158930:intron 45.0%
ATCTTTGCTGGAGTCGTTGA+TGG - chr7_4:48360662-48360681 Msa1158930:intron 45.0%
! TCGTTGATGGAAGGAACATC+TGG - chr7_4:48360675-48360694 Msa1158930:intron 45.0%
! CGTTGATGGAAGGAACATCT+GGG - chr7_4:48360676-48360695 Msa1158930:intron 45.0%
CATCTGGGCAAATGATCTTG+AGG - chr7_4:48360691-48360710 Msa1158930:intron 45.0%
GGCTTCTCTCAGTACATTAG+AGG - chr7_4:48360712-48360731 Msa1158930:intron 45.0%
AGTACATTAGAGGCTCTTGC+CGG - chr7_4:48360722-48360741 Msa1158930:intron 45.0%
AATACCTTTGCCCACAATGC+CGG + chr7_4:48360744-48360763 None:intergenic 45.0%
TAATGCACTTGCAGGCAACA+AGG - chr7_4:48360987-48361006 Msa1158930:intron 45.0%
TGCAGAACTTGCAGAGAAGA+TGG + chr7_4:48361386-48361405 None:intergenic 45.0%
!! TTTTCAGGCTGCTGCATTGA+AGG - chr7_4:48361552-48361571 Msa1158930:intron 45.0%
TTTCAGGCTGCTGCATTGAA+GGG - chr7_4:48361553-48361572 Msa1158930:intron 45.0%
!! TGGCACTGACATTAGTAGCA+CGG + chr7_4:48361591-48361610 None:intergenic 45.0%
TACTAATGTCAGTGCCAGGT+TGG - chr7_4:48361594-48361613 Msa1158930:CDS 45.0%
! CTTTTGTTGAGCATCCAACC+TGG + chr7_4:48361611-48361630 None:intergenic 45.0%
!! ATGATCCAATGGTGGTGGTT+GGG + chr7_4:48361654-48361673 None:intergenic 45.0%
!! AATGATCCAATGGTGGTGGT+TGG + chr7_4:48361655-48361674 None:intergenic 45.0%
! CTCCGAGGAAGAGTACATTA+AGG - chr7_4:48361810-48361829 Msa1158930:intron 45.0%
CTTGAAGCTCAACAACTGAG+CGG + chr7_4:48361852-48361871 None:intergenic 45.0%
TCGCCTTTACTGCTAATGGA+TGG - chr7_4:48362167-48362186 Msa1158930:intron 45.0%
! CGCCTTTACTGCTAATGGAT+GGG - chr7_4:48362168-48362187 Msa1158930:intron 45.0%
CACCCATCCATTAGCAGTAA+AGG + chr7_4:48362173-48362192 None:intergenic 45.0%
AATGGATGGGTGCAATCCTA+TGG - chr7_4:48362181-48362200 Msa1158930:intron 45.0%
CTTGACACAACGAGATCCAT+AGG + chr7_4:48362200-48362219 None:intergenic 45.0%
GTCAAGCCACCAATCATCTA+TGG - chr7_4:48362214-48362233 Msa1158930:CDS 45.0%
CAGAAGACAGTCATTGCCTT+TGG + chr7_4:48362253-48362272 None:intergenic 45.0%
CAAAGGCAATGACTGTCTTC+TGG - chr7_4:48362251-48362270 Msa1158930:CDS 45.0%
TTTACCAAGCGCCCAATGAA+GGG - chr7_4:48362292-48362311 Msa1158930:intron 45.0%
CCAGTAAGCATTCCCTTCAT+TGG + chr7_4:48362307-48362326 None:intergenic 45.0%
CCAATGAAGGGAATGCTTAC+TGG - chr7_4:48362304-48362323 Msa1158930:intron 45.0%
ACCAGTTGAGAATGGTGACA+GGG + chr7_4:48362330-48362349 None:intergenic 45.0%
AACGAAGGACCAGTTGAGAA+TGG + chr7_4:48362338-48362357 None:intergenic 45.0%
TTCCTGTGATGTTACAAGGG+GGG + chr7_4:48362392-48362411 None:intergenic 45.0%
GTTGAAGACCTTGAGAAAGG+TGG - chr7_4:48362545-48362564 Msa1158930:CDS 45.0%
GACCTTGAGAAAGGTGGTAT+TGG - chr7_4:48362551-48362570 Msa1158930:CDS 45.0%
CACCAATACCACCTTTCTCA+AGG + chr7_4:48362556-48362575 None:intergenic 45.0%
! CATTGGTGATTCTGAAGGAG+TGG + chr7_4:48362661-48362680 None:intergenic 45.0%
! ACCGACATTGGTGATTCTGA+AGG + chr7_4:48362666-48362685 None:intergenic 45.0%
! AATCACCAATGTCGGTGTTC+AGG - chr7_4:48362670-48362689 Msa1158930:CDS 45.0%
CTTGTGAGCCAAACATACCT+GGG + chr7_4:48362702-48362721 None:intergenic 45.0%
ACTTGTGAGCCAAACATACC+TGG + chr7_4:48362703-48362722 None:intergenic 45.0%
! TAGAAGCTTTTCGTCGGAAC+GGG + chr7_4:48362879-48362898 None:intergenic 45.0%
CTTCTATCAGTCTTCCGTGA+AGG - chr7_4:48362893-48362912 Msa1158930:intron 45.0%
GAAGGAGTTGTTTATGGTGC+TGG - chr7_4:48362911-48362930 Msa1158930:intron 45.0%
AGTGGATGTCATACACACCA+GGG + chr7_4:48362943-48362962 None:intergenic 45.0%
CCCACAAAACGTTCTTCTCA+AGG + chr7_4:48363024-48363043 None:intergenic 45.0%
TTCACTTGGCAAGCTCGTTA+CGG + chr7_4:48363132-48363151 None:intergenic 45.0%
AACGAGCTTGCCAAGTGAAA+AGG - chr7_4:48363133-48363152 Msa1158930:intron 45.0%
TCCAAATGTCTCTGTATCCG+TGG - chr7_4:48363330-48363349 Msa1158930:intron 45.0%
TAAAGATTGTGGCAGAGCCA+CGG + chr7_4:48363350-48363369 None:intergenic 45.0%
CCACGATGTGACAATATCCT+TGG + chr7_4:48363470-48363489 None:intergenic 45.0%
CCAAGGATATTGTCACATCG+TGG - chr7_4:48363467-48363486 Msa1158930:intron 45.0%
! TTGTCACATCGTGGTTTGCA+AGG - chr7_4:48363476-48363495 Msa1158930:intron 45.0%
ATGGGTAGACGGAAAAGGGA+AGG + chr7_4:48358389-48358408 None:intergenic 50.0%
GGGGAAGGAAAATGGGTAGA+CGG + chr7_4:48358400-48358419 None:intergenic 50.0%
GTTTAGCGGTGGATCTAGAG+TGG + chr7_4:48358493-48358512 None:intergenic 50.0%
CTAAGGGCCGACTAATCTAG+TGG + chr7_4:48358983-48359002 None:intergenic 50.0%
! CACTAGATTAGTCGGCCCTT+AGG - chr7_4:48358981-48359000 Msa1158930:CDS 50.0%
! CAGTGCCGAGGATTTGAAGA+AGG - chr7_4:48359197-48359216 Msa1158930:CDS 50.0%
CTTGATACTACCGCCACTCT+CGG - chr7_4:48359315-48359334 Msa1158930:CDS 50.0%
CACTTGGTCATCTCCATAGC+AGG + chr7_4:48359426-48359445 None:intergenic 50.0%
CTGCTATGGAGATGACCAAG+TGG - chr7_4:48359424-48359443 Msa1158930:intron 50.0%
!! CTAGTTGGTGTCGAACCACT+TGG + chr7_4:48359442-48359461 None:intergenic 50.0%
GACACTGTTCCCGTTCTTGT+TGG - chr7_4:48360154-48360173 Msa1158930:CDS 50.0%
GAAACAGGGCCAACAAGAAC+GGG + chr7_4:48360166-48360185 None:intergenic 50.0%
GGATTTGTCAACTCCCTTGG+CGG + chr7_4:48360209-48360228 None:intergenic 50.0%
GGACCTTGGGAAGCAAAGAT+AGG + chr7_4:48360240-48360259 None:intergenic 50.0%
TTGTAGACGGCAAGGACCTT+GGG + chr7_4:48360253-48360272 None:intergenic 50.0%
TGATGAACCCACACTTGTCC+TGG - chr7_4:48360415-48360434 Msa1158930:CDS 50.0%
AGCGGGAATATCAGCGAAGT+AGG + chr7_4:48360528-48360547 None:intergenic 50.0%
CGACACCACTCAAAGATGTG+AGG + chr7_4:48360565-48360584 None:intergenic 50.0%
ATCAAGGCTGGATTTCCCAG+TGG - chr7_4:48360632-48360651 Msa1158930:intron 50.0%
! TTGCTGGAGTCGTTGATGGA+AGG - chr7_4:48360666-48360685 Msa1158930:intron 50.0%
GTGAAGAAGTGAGCAGGAAG+TGG + chr7_4:48360869-48360888 None:intergenic 50.0%
AGCAGTGTGAAGAAGTGAGC+AGG + chr7_4:48360875-48360894 None:intergenic 50.0%
CTCACTTCTTCACACTGCTG+TGG - chr7_4:48360876-48360895 Msa1158930:CDS 50.0%
!! GCATTGGCTAATGCACTTGC+AGG - chr7_4:48360979-48360998 Msa1158930:intron 50.0%
ACTTGCAGGCAACAAGGATG+AGG - chr7_4:48360993-48361012 Msa1158930:intron 50.0%
CTCGTTAGTCACTCTTGGAG+AGG + chr7_4:48361428-48361447 None:intergenic 50.0%
CTCTCCAAGAGTGACTAACG+AGG - chr7_4:48361426-48361445 Msa1158930:CDS 50.0%
ACAGCCTCGTTAGTCACTCT+TGG + chr7_4:48361433-48361452 None:intergenic 50.0%
GACTAACGAGGCTGTTCAGA+AGG - chr7_4:48361438-48361457 Msa1158930:CDS 50.0%
TGACATTAGTAGCACGGCGA+TGG + chr7_4:48361585-48361604 None:intergenic 50.0%
! GTGCTACTAATGTCAGTGCC+AGG - chr7_4:48361590-48361609 Msa1158930:CDS 50.0%
TACTTTGGCGAGCAGTTGTC+AGG - chr7_4:48362142-48362161 Msa1158930:intron 50.0%
GGCTTCGCCTTTACTGCTAA+TGG - chr7_4:48362163-48362182 Msa1158930:intron 50.0%
AGACAGTCATTGCCTTTGGG+CGG + chr7_4:48362249-48362268 None:intergenic 50.0%
CTTTACCAAGCGCCCAATGA+AGG - chr7_4:48362291-48362310 Msa1158930:intron 50.0%
GACCAGTTGAGAATGGTGAC+AGG + chr7_4:48362331-48362350 None:intergenic 50.0%
! AGGCTGGTCAACTCTAACGA+AGG + chr7_4:48362353-48362372 None:intergenic 50.0%
TCGTTAGAGTTGACCAGCCT+AGG - chr7_4:48362353-48362372 Msa1158930:intron 50.0%
GGTCGAGTTTATACCTAGGC+TGG + chr7_4:48362369-48362388 None:intergenic 50.0%
TCCTGTGATGTTACAAGGGG+GGG + chr7_4:48362391-48362410 None:intergenic 50.0%
GACCTGCTACCAGATTGCTT+TGG - chr7_4:48362508-48362527 Msa1158930:CDS 50.0%
AGCCAAAGCAATCTGGTAGC+AGG + chr7_4:48362513-48362532 None:intergenic 50.0%
!! TGATGAGGCTGCTTTGAGAG+AGG - chr7_4:48362586-48362605 Msa1158930:CDS 50.0%
!! GATGAGGCTGCTTTGAGAGA+GGG - chr7_4:48362587-48362606 Msa1158930:CDS 50.0%
TGGAGTAGCACATGTGAGTG+TGG + chr7_4:48362793-48362812 None:intergenic 50.0%
GAGTGGATGTCATACACACC+AGG + chr7_4:48362944-48362963 None:intergenic 50.0%
!! GTCAGTTGGTGGGATTCTTG+GGG + chr7_4:48362966-48362985 None:intergenic 50.0%
!! CGTCAGTTGGTGGGATTCTT+GGG + chr7_4:48362967-48362986 None:intergenic 50.0%
!! TCGTCAGTTGGTGGGATTCT+TGG + chr7_4:48362968-48362987 None:intergenic 50.0%
!!! GGGTTTTTAGCCCACAGTCA+GGG + chr7_4:48363051-48363070 None:intergenic 50.0%
TGCAGCAACCATGTTGAGGA+GGG + chr7_4:48363098-48363117 None:intergenic 50.0%
GCCACGGATACAGAGACATT+TGG + chr7_4:48363334-48363353 None:intergenic 50.0%
GTTTCACGCCATGGTTTCCA+AGG - chr7_4:48363450-48363469 Msa1158930:intron 50.0%
CTCTCTTGGGTCCCATACGA+GGG + chr7_4:48359137-48359156 None:intergenic 55.0%
TCTCTCTTGGGTCCCATACG+AGG + chr7_4:48359138-48359157 None:intergenic 55.0%
GGACAAAAAGAGCAGTGCCG+AGG - chr7_4:48359185-48359204 Msa1158930:CDS 55.0%
CCATCCATACCTGGGTGGAA+CGG + chr7_4:48359343-48359362 None:intergenic 55.0%
CCACCAGTCCATCCATACCT+GGG + chr7_4:48359351-48359370 None:intergenic 55.0%
ACCACCAGTCCATCCATACC+TGG + chr7_4:48359352-48359371 None:intergenic 55.0%
!! GGATGGACTGGTGGTGAGAT+TGG - chr7_4:48359357-48359376 Msa1158930:intron 55.0%
TAATGCCACCGTCCCTGCTA+TGG - chr7_4:48359410-48359429 Msa1158930:intron 55.0%
GGTCATCTCCATAGCAGGGA+CGG + chr7_4:48359421-48359440 None:intergenic 55.0%
TCACCTCGGGACCCAATTCT+GGG + chr7_4:48359582-48359601 None:intergenic 55.0%
TTCACCTCGGGACCCAATTC+TGG + chr7_4:48359583-48359602 None:intergenic 55.0%
TTGCTCTCCAAAGCCGCCAA+GGG - chr7_4:48360193-48360212 Msa1158930:CDS 55.0%
CTTGTAGACGGCAAGGACCT+TGG + chr7_4:48360254-48360273 None:intergenic 55.0%
CTTCGCTGATATTCCCGCTG+AGG - chr7_4:48360529-48360548 Msa1158930:intron 55.0%
! AGGGTCTTGTATGCCTCAGC+GGG + chr7_4:48360545-48360564 None:intergenic 55.0%
! GAGGGTCTTGTATGCCTCAG+CGG + chr7_4:48360546-48360565 None:intergenic 55.0%
!! TTGAGTGGTGTCGCCGCTTA+TGG - chr7_4:48360572-48360591 Msa1158930:intron 55.0%
CTCTGCAAGTTCTGCAGCTC+AGG - chr7_4:48361390-48361409 Msa1158930:CDS 55.0%
GTTCTGCAGCTCAGGCTTCA+AGG - chr7_4:48361398-48361417 Msa1158930:CDS 55.0%
!! ATGGTGGTGGTTGGGAGGAT+TGG + chr7_4:48361646-48361665 None:intergenic 55.0%
ATCCTCCCAACCACCACCAT+TGG - chr7_4:48361646-48361665 Msa1158930:CDS 55.0%
!! ATCCAATGGTGGTGGTTGGG+AGG + chr7_4:48361651-48361670 None:intergenic 55.0%
GGGGAATGATCCAATGGTGG+TGG + chr7_4:48361659-48361678 None:intergenic 55.0%
CTGGGGGAATGATCCAATGG+TGG + chr7_4:48361662-48361681 None:intergenic 55.0%
GGTCTGGGGGAATGATCCAA+TGG + chr7_4:48361665-48361684 None:intergenic 55.0%
TCCTTAGTTCCACGGTCTGG+GGG + chr7_4:48361678-48361697 None:intergenic 55.0%
CTCCTTAGTTCCACGGTCTG+GGG + chr7_4:48361679-48361698 None:intergenic 55.0%
CCTCCTTAGTTCCACGGTCT+GGG + chr7_4:48361680-48361699 None:intergenic 55.0%
CCAGACCGTGGAACTAAGGA+GGG - chr7_4:48361678-48361697 Msa1158930:CDS 55.0%
GCGAACCCTCCTTAGTTCCA+CGG + chr7_4:48361686-48361705 None:intergenic 55.0%
GAGGGTTCGCCGTGAATTCA+AGG - chr7_4:48361696-48361715 Msa1158930:intron 55.0%
CATTCCCTTCATTGGGCGCT+TGG + chr7_4:48362299-48362318 None:intergenic 55.0%
GCCCTGTCACCATTCTCAAC+TGG - chr7_4:48362326-48362345 Msa1158930:intron 55.0%
GGGGGGTCGAGTTTATACCT+AGG + chr7_4:48362373-48362392 None:intergenic 55.0%
CCTGTGATGTTACAAGGGGG+GGG + chr7_4:48362390-48362409 None:intergenic 55.0%
TGAGAGAGGGACTACCACTG+AGG - chr7_4:48362600-48362619 Msa1158930:CDS 55.0%
GTCCAAGTAGTGAGCGTGCT+CGG + chr7_4:48362630-48362649 None:intergenic 55.0%
AGCACGCTCACTACTTGGAC+TGG - chr7_4:48362630-48362649 Msa1158930:CDS 55.0%
GCACGCTCACTACTTGGACT+GGG - chr7_4:48362631-48362650 Msa1158930:CDS 55.0%
GGAGTCCTGAACACCGACAT+TGG + chr7_4:48362678-48362697 None:intergenic 55.0%
GGACTCCACCCAGGTATGTT+TGG - chr7_4:48362691-48362710 Msa1158930:CDS 55.0%
GTGAGCCAAACATACCTGGG+TGG + chr7_4:48362699-48362718 None:intergenic 55.0%
! TATGGTGCTGGAATTGGCCC+TGG - chr7_4:48362923-48362942 Msa1158930:intron 55.0%
TTGGTGGGATTCTTGGGGAG+TGG + chr7_4:48362961-48362980 None:intergenic 55.0%
TTGTGGGTCAACCCTGACTG+TGG - chr7_4:48363037-48363056 Msa1158930:intron 55.0%
TGTGGGTCAACCCTGACTGT+GGG - chr7_4:48363038-48363057 Msa1158930:intron 55.0%
!!! CGGGTTTTTAGCCCACAGTC+AGG + chr7_4:48363052-48363071 None:intergenic 55.0%
TAAGCCTGCCCTCCTCAACA+TGG - chr7_4:48363087-48363106 Msa1158930:intron 55.0%
CTGCAGCAACCATGTTGAGG+AGG + chr7_4:48363099-48363118 None:intergenic 55.0%
TGGCTGCAGCAACCATGTTG+AGG + chr7_4:48363102-48363121 None:intergenic 55.0%
CCGTTCCACCCAGGTATGGA+TGG - chr7_4:48359340-48359359 Msa1158930:intron 60.0%
CCAGTCCATCCATACCTGGG+TGG + chr7_4:48359348-48359367 None:intergenic 60.0%
CCACCCAGGTATGGATGGAC+TGG - chr7_4:48359345-48359364 Msa1158930:intron 60.0%
!! CCCAGGTATGGATGGACTGG+TGG - chr7_4:48359348-48359367 Msa1158930:intron 60.0%
CATCTCCATAGCAGGGACGG+TGG + chr7_4:48359418-48359437 None:intergenic 60.0%
TGTCCCAGAATTGGGTCCCG+AGG - chr7_4:48359576-48359595 Msa1158930:CDS 60.0%
GTTGCTCTCCAAAGCCGCCA+AGG - chr7_4:48360192-48360211 Msa1158930:CDS 60.0%
GTCAACTCCCTTGGCGGCTT+TGG + chr7_4:48360203-48360222 None:intergenic 60.0%
AGAGGCTCTTGCCGGCATTG+TGG - chr7_4:48360730-48360749 Msa1158930:intron 60.0%
GAGGCTCTTGCCGGCATTGT+GGG - chr7_4:48360731-48360750 Msa1158930:intron 60.0%
CTTGCCGGCATTGTGGGCAA+AGG - chr7_4:48360737-48360756 Msa1158930:intron 60.0%
TGGATCATTCCCCCAGACCG+TGG - chr7_4:48361666-48361685 Msa1158930:CDS 60.0%
TCCCCCAGACCGTGGAACTA+AGG - chr7_4:48361674-48361693 Msa1158930:CDS 60.0%
CCCAGACCGTGGAACTAAGG+AGG - chr7_4:48361677-48361696 Msa1158930:CDS 60.0%
CCCTCCTTAGTTCCACGGTC+TGG + chr7_4:48361681-48361700 None:intergenic 60.0%
! TGGTGATGTGAGCCGCCCAA+AGG - chr7_4:48362234-48362253 Msa1158930:CDS 60.0%
CCCCCCCCTTGTAACATCAC+AGG - chr7_4:48362387-48362406 Msa1158930:CDS 60.0%
GTCCGAGCACGCTCACTACT+TGG - chr7_4:48362625-48362644 Msa1158930:CDS 60.0%
CGGCGATCTCGTCAGTTGGT+GGG + chr7_4:48362976-48362995 None:intergenic 60.0%
TCGGCGATCTCGTCAGTTGG+TGG + chr7_4:48362977-48362996 None:intergenic 60.0%
CTGTCGGCGATCTCGTCAGT+TGG + chr7_4:48362980-48362999 None:intergenic 60.0%
CAACTGACGAGATCGCCGAC+AGG - chr7_4:48362978-48362997 Msa1158930:intron 60.0%
GCAACCATGTTGAGGAGGGC+AGG + chr7_4:48363094-48363113 None:intergenic 60.0%
CCTCGGGCTCTCCGTGTACT+AGG + chr7_4:48361894-48361913 None:intergenic 65.0%
CCTAGTACACGGAGAGCCCG+AGG - chr7_4:48361891-48361910 Msa1158930:intron 65.0%
GCGTGCTCGGACTTCCTCAG+TGG + chr7_4:48362617-48362636 None:intergenic 65.0%
CGGTGTTCAGGACTCCACCC+AGG - chr7_4:48362682-48362701 Msa1158930:CDS 65.0%
! TGGAACGGCGCCGAGAGTGG+CGG + chr7_4:48359328-48359347 None:intergenic 70.0%
GGCGCCGTTCCACCCAGGTA+TGG - chr7_4:48359336-48359355 Msa1158930:intron 70.0%
! GGGTGGAACGGCGCCGAGAG+TGG + chr7_4:48359331-48359350 None:intergenic 75.0%
CTCTCGGCGCCGTTCCACCC+AGG - chr7_4:48359331-48359350 Msa1158930:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 48358258 48363585 48358258 ID=Msa1158930;Name=Msa1158930
chr7_4 mRNA 48358258 48363585 48358258 ID=Msa1158930-mRNA-1;Parent=Msa1158930;Name=Msa1158930-mRNA-1;_AED=0.09;_eAED=0.09;_QI=94|1|1|1|0.83|0.69|13|406|763
chr7_4 exon 48358258 48358297 48358258 ID=Msa1158930-mRNA-1:exon:13068;Parent=Msa1158930-mRNA-1
chr7_4 exon 48358327 48359055 48358327 ID=Msa1158930-mRNA-1:exon:13067;Parent=Msa1158930-mRNA-1
chr7_4 exon 48359140 48359341 48359140 ID=Msa1158930-mRNA-1:exon:13066;Parent=Msa1158930-mRNA-1
chr7_4 exon 48359469 48359719 48359469 ID=Msa1158930-mRNA-1:exon:13065;Parent=Msa1158930-mRNA-1
chr7_4 exon 48359931 48360036 48359931 ID=Msa1158930-mRNA-1:exon:13064;Parent=Msa1158930-mRNA-1
chr7_4 exon 48360118 48360284 48360118 ID=Msa1158930-mRNA-1:exon:13063;Parent=Msa1158930-mRNA-1
chr7_4 exon 48360381 48360461 48360381 ID=Msa1158930-mRNA-1:exon:13062;Parent=Msa1158930-mRNA-1
chr7_4 exon 48360829 48360992 48360829 ID=Msa1158930-mRNA-1:exon:13061;Parent=Msa1158930-mRNA-1
chr7_4 exon 48361085 48361476 48361085 ID=Msa1158930-mRNA-1:exon:13060;Parent=Msa1158930-mRNA-1
chr7_4 exon 48361571 48361698 48361571 ID=Msa1158930-mRNA-1:exon:13059;Parent=Msa1158930-mRNA-1
chr7_4 exon 48362189 48362276 48362189 ID=Msa1158930-mRNA-1:exon:13058;Parent=Msa1158930-mRNA-1
chr7_4 exon 48362383 48362736 48362383 ID=Msa1158930-mRNA-1:exon:13057;Parent=Msa1158930-mRNA-1
chr7_4 exon 48363496 48363585 48363496 ID=Msa1158930-mRNA-1:exon:13056;Parent=Msa1158930-mRNA-1
chr7_4 five_prime_UTR 48363496 48363585 48363496 ID=Msa1158930-mRNA-1:five_prime_utr;Parent=Msa1158930-mRNA-1
chr7_4 five_prime_UTR 48362733 48362736 48362733 ID=Msa1158930-mRNA-1:five_prime_utr;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48362383 48362732 48362383 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48362189 48362276 48362189 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48361571 48361698 48361571 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48361085 48361476 48361085 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48360829 48360992 48360829 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48360381 48360461 48360381 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48360118 48360284 48360118 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48359931 48360036 48359931 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48359469 48359719 48359469 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48359140 48359341 48359140 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 CDS 48358693 48359055 48358693 ID=Msa1158930-mRNA-1:cds;Parent=Msa1158930-mRNA-1
chr7_4 three_prime_UTR 48358327 48358692 48358327 ID=Msa1158930-mRNA-1:three_prime_utr;Parent=Msa1158930-mRNA-1
chr7_4 three_prime_UTR 48358258 48358297 48358258 ID=Msa1158930-mRNA-1:three_prime_utr;Parent=Msa1158930-mRNA-1
Gene Sequence

>Msa1158930

ATGGCTTCTCACATTGTTGGATACCCTCGTATGGGACCCAAGAGAGAGTTGAAATTTGCTTTGGAATCATTCTGGGACAAAAAGAGCAGTGCCGAGGATTTGAAGAAGGTTTCTGCTGATCTAAGAGCATCAATCTGGAAACAGATGTCTGATGTTGGGATCAAGTATATCCCAAGCAACACTTTTACTTACTATGATCATGTACTTGATACTACCGCCACTCTCGGCGCCGTTCCACCCAGGTATGGATGGACTGGTGGTGAGATTGGATTCGATACTTACTTTTCAATGGCTAGAGGTAATGCCACCGTCCCTGCTATGGAGATGACCAAGTGGTTCGACACCAACTACCACTTTATTGTCCCAGAATTGGGTCCCGAGGTGAACTTTGTGTACTCTTCTCACAAGGCTGTTGAAGAATACAAGGAAGCCAAGGCGCTTGGAGTAGACACTGTTCCCGTTCTTGTTGGCCCTGTTTCATACTTGTTGCTCTCCAAAGCCGCCAAGGGAGTTGACAAATCCTTTGATCTCCTATCTTTGCTTCCCAAGGTCCTTGCCGTCTACAAGGAGGTTATTGCTGATCTTAAGGCTGCTGGTGCTCAGTTTATTCAATTTGATGAACCCACACTTGTCCTGGATCTTGAAGCTCACAAGTTACAAGCATTTACTGATGCATATGCAGCACTTACACCTTCTTTTGAAGGTCTCCATGTTCTTGTTGAGACCTACTTCGCTGATATTCCCGCTGAGGCATACAAGACCCTCACATCTTTGAGTGGTGTCGCCGCTTATGGATTTGATTTAGTCCGTGGAACTAAGACTCTTGATTTGATCAAGGCTGGATTTCCCAGTGGAAAATGGATCTTTGCTGGAGTCGTTGATGGAAGGAACATCTGGGCAAATGATCTTGAGGCTTCTCTCAGTACATTAGAGGCTCTTGCCGGCATTGTGGGCAAAGAGAGAATTGTTGTGTCCACTTCCTGCTCACTTCTTCACACTGCTGTGGATCTTGTTAATGAGACCAAGTTGGATGATGAAATTAAGTCATGGTTAGCTTTTGCTGCCCAAAAAGTTGTTGAAGTAAATGCATTGGCTAATGCACTTGCAGGCAACAAGGATGAGGCCATCTTCTCTGCAAGTTCTGCAGCTCAGGCTTCAAGGAAGTCCTCTCCAAGAGTGACTAACGAGGCTGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCAGACCATCGCCGTGCTACTAATGTCAGTGCCAGGTTGGATGCTCAACAAAAGAAGCTTAATCTTCCAATCCTCCCAACCACCACCATTGGATCATTCCCCCAGACCGTGGAACTAAGGAGGGTTCGCCGTGAATTCAAGGCTAAGAAGATCTCCGAGGAAGAGTACATTAAGGCAATTAAGGAGGAAATCCGCTCAGTTGTTGAGCTTCAAGAAGAGCTTGATATTGATGTCCTAGTACACGGAGAGCCCGAGAGGAATGATATGGTTGAGTACTTTGGCGAGCAGTTGTCAGGCTTCGCCTTTACTGCTAATGGATGGGTGCAATCCTATGGATCTCGTTGTGTCAAGCCACCAATCATCTATGGTGATGTGAGCCGCCCAAAGGCAATGACTGTCTTCTGGTCAGCTCTTGCTCAGAGCTTTACCAAGCGCCCAATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTCGTTAGAGTTGACCAGCCTAGATCTGAGACCTGCTACCAGATTGCTTTGGCTATTAAGGATGAAGTTGAAGACCTTGAGAAAGGTGGTATTGGTGTCATCCAAATTGATGAGGCTGCTTTGAGAGAGGGACTACCACTGAGGAAGTCCGAGCACGCTCACTACTTGGACTGGGCTGTCCACTCCTTCAGAATCACCAATGTCGGTGTTCAGGACTCCACCCAGATCCACACTCACATGTGCTACTCCAACTTCAACGACATCATTCATTCCATCATTGATATGGATGCTGATGTTATCACAATTGAGAACTCCCGTTCCGACGAAAAGCTTCTATCAGTCTTCCGTGAAGGAGTTGTTTATGGTGCTGGAATTGGCCCTGGTGTGTATGACATCCACTCCCCAAGAATCCCACCAACTGACGAGATCGCCGACAGGATCAACAAGATGCTTGCTGTCCTTGAGAAGAACGTTTTGTGGGTCAACCCTGACTGTGGGCTAAAAACCCGTAAGTACACAGAGGTTAAGCCTGCCCTCCTCAACATGGTTGCTGCAGCCAAACAAATCCGTAACGAGCTTGCCAAGTGA
Protein sequence

>Msa1158930

MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLKKVSADLRASIWKQMSDVGIKYIPSNTFTYYDHVLDTTATLGAVPPRYGWTGGEIGFDTYFSMARGNATVPAMEMTKWFDTNYHFIVPELGPEVNFVYSSHKAVEEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFDLLSLLPKVLAVYKEVIADLKAAGAQFIQFDEPTLVLDLEAHKLQAFTDAYAALTPSFEGLHVLVETYFADIPAEAYKTLTSLSGVAAYGFDLVRGTKTLDLIKAGFPSGKWIFAGVVDGRNIWANDLEASLSTLEALAGIVGKERIVVSTSCSLLHTAVDLVNETKLDDEIKSWLAFAAQKVVEVNALANALAGNKDEAIFSASSAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREFKAKKISEEEYIKAIKEEIRSVVELQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSALAQSFTKRPMKGMLTGPVTILNWSFVRVDQPRSETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAHYLDWAVHSFRITNVGVQDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVVYGAGIGPGVYDIHSPRIPPTDEIADRINKMLAVLEKNVLWVNPDCGLKTRKYTEVKPALLNMVAAAKQIRNELAK*