AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122860 MtrunA17_Chr4g0047461 70.130 154 41 2 1 149 101 254 8.54e-70 211
Msa1122860 MtrunA17_Chr7g0261121 70.588 153 40 2 1 148 228 380 7.68e-68 210
Msa1122860 MtrunA17_Chr8g0378641 60.390 154 55 3 2 150 232 384 2.90e-59 188
Msa1122860 MtrunA17_Chr7g0261161 76.596 94 17 2 1 89 1 94 6.53e-41 134
Msa1122860 MtrunA17_Chr5g0435201 45.946 148 65 4 2 146 215 350 7.91e-27 103
Msa1122860 MtrunA17_Chr6g0488491 42.568 148 70 4 2 146 213 348 2.38e-23 94.0
Msa1122860 MtrunA17_Chr8g0371101 41.304 138 60 5 2 129 226 352 8.15e-20 84.3
Msa1122860 MtrunA17_Chr2g0300541 38.710 155 66 5 2 141 238 378 1.42e-19 84.0
Msa1122860 MtrunA17_Chr8g0371031 38.411 151 70 5 2 141 245 383 7.64e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122860 AT1G44080.1 32.847 137 72 6 2 129 194 319 1.74e-12 64.3
Msa1122860 AT1G65770.1 32.374 139 71 7 1 129 209 334 3.29e-11 60.5
Msa1122860 AT4G35733.1 30.769 130 81 3 2 127 209 333 6.14e-11 59.7

Find 102 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAACCTGCTGACAAATTT+TGG 0.080030 7_3:+73406628 Msa1122860:three_prime_UTR
ACTTTATGTTGTGGATAAAA+TGG 0.170692 7_3:+73406200 Msa1122860:three_prime_UTR
GAGTTGACTGTTTCCAATAT+TGG 0.239268 7_3:+73406099 Msa1122860:three_prime_UTR
AAGATTTGTATTTAAATTCA+TGG 0.258740 7_3:+73406823 Msa1122860:three_prime_UTR
TCCGTAGTGTTTGTAGATTT+TGG 0.264838 7_3:+73405650 Msa1122860:three_prime_UTR
GGGTGATGTTTCGTTTGTTT+TGG 0.269127 7_3:+73399228 Msa1122860:CDS
GTGCTGAAAATAGGAATATA+AGG 0.270273 7_3:+73406292 Msa1122860:three_prime_UTR
AGTCATCATGAAGATAAAAT+TGG 0.275568 7_3:+73405967 Msa1122860:three_prime_UTR
TGTACCATTGTGCTGAAAAT+AGG 0.276376 7_3:+73406283 Msa1122860:three_prime_UTR
ATGGTTAGATGTAAAAGATT+TGG 0.281291 7_3:+73399207 Msa1122860:intron
GAGATCAAAGAGATAAAGTT+TGG 0.285701 7_3:-73405848 None:intergenic
TGGTTCAATGCGGTATATTT+TGG 0.305635 7_3:-73405746 None:intergenic
TTTCAACTTGGAGAATTTAG+AGG 0.305854 7_3:+73399342 Msa1122860:CDS
GGGTGAGGTTTCGTTTGTTT+TGG 0.311852 7_3:+73406491 Msa1122860:three_prime_UTR
AAAGGAAAATATCATGTTAA+AGG 0.318603 7_3:+73406125 Msa1122860:three_prime_UTR
TTGATCAAGAATGGGGTAAA+TGG 0.326226 7_3:+73406451 Msa1122860:three_prime_UTR
ATGGTTAGAAGTAAAAGATT+TGG 0.332561 7_3:+73406470 Msa1122860:three_prime_UTR
AGACTCAAACATTGCATTGT+TGG 0.341865 7_3:+73399255 Msa1122860:CDS
TGGTTAGATGTAAAAGATTT+GGG 0.347718 7_3:+73399208 Msa1122860:intron
CAAATCTTCTTGAAGATTTG+TGG 0.347804 7_3:+73405581 Msa1122860:three_prime_UTR
ATTGGTATGATTTGTTCCTT+TGG 0.359415 7_3:+73406969 Msa1122860:three_prime_UTR
CAATGCTTTGTCTTTGAAGT+TGG 0.363091 7_3:+73398979 Msa1122860:CDS
TGGTTAGAAGTAAAAGATTT+GGG 0.374795 7_3:+73406471 Msa1122860:three_prime_UTR
CAATGCTCTTTCCTTGAAGT+TGG 0.381115 7_3:+73406239 Msa1122860:three_prime_UTR
CAGGACTTCTTGTTTCAACT+TGG 0.381282 7_3:+73399330 Msa1122860:CDS
CAAAAGGGGTTACTTCTTGA+AGG 0.384442 7_3:+73406404 Msa1122860:three_prime_UTR
TTGTGAGAGGCAGGTGGAGG+AGG 0.384893 7_3:-73405685 None:intergenic
AAATCTTCTTGAAGATTTGT+GGG 0.389413 7_3:+73405582 Msa1122860:three_prime_UTR
TTTATAAGCTTGATCAAGAA+TGG 0.392244 7_3:+73399179 Msa1122860:CDS
TTTATAAGCTTGATCAAGAA+TGG 0.392244 7_3:+73406442 Msa1122860:three_prime_UTR
CTTTATGTTGTGGATAAAAT+GGG 0.396836 7_3:+73406201 Msa1122860:three_prime_UTR
TCAACTTCTTGTTCTAATCA+AGG 0.402165 7_3:+73405790 Msa1122860:three_prime_UTR
ATGATGAAAGGTATTACAAA+AGG 0.404208 7_3:+73406388 Msa1122860:three_prime_UTR
CCAATCCAAAATTTGTCAGC+AGG 0.420447 7_3:-73406633 None:intergenic
TGATGAAAGGTATTACAAAA+GGG 0.432135 7_3:+73406389 Msa1122860:three_prime_UTR
TGAAAATTGAACCAACTTCA+AGG 0.432491 7_3:-73406250 None:intergenic
ATACAAATCTTCAATGAAGT+TGG 0.434056 7_3:-73406811 None:intergenic
TTGTTGGCTCGAGATTACTA+TGG 0.437431 7_3:+73406534 Msa1122860:three_prime_UTR
TGTTTCCAATATTGGAGAAA+AGG 0.445230 7_3:+73406107 Msa1122860:three_prime_UTR
TTATAAGCTTGATCAAGAAT+GGG 0.450966 7_3:+73399180 Msa1122860:CDS
TTATAAGCTTGATCAAGAAT+GGG 0.450966 7_3:+73406443 Msa1122860:three_prime_UTR
TCACTACTACCAATTGCAAT+TGG 0.463485 7_3:-73406920 None:intergenic
CAGATACCAGAAAAGGTGTA+AGG 0.464216 7_3:+73405453 Msa1122860:intron
TTCTATTCAGGGTCGTTGCA+TGG 0.467549 7_3:+73406053 Msa1122860:three_prime_UTR
TGATGATATAATACATTACA+AGG 0.467606 7_3:+73406173 Msa1122860:three_prime_UTR
CAAATCTTCAATGAAGTTGG+TGG 0.472728 7_3:-73406808 None:intergenic
ACATCTCTGCCAATTGCAAT+TGG 0.476089 7_3:+73406911 Msa1122860:three_prime_UTR
ATTTGTATATTGACGGTGAA+AGG 0.480910 7_3:+73399113 Msa1122860:CDS
GTAGTTGATTTGTATATTGA+CGG 0.484013 7_3:+73399106 Msa1122860:CDS
TCTACTTCTATTATGAAAGC+AGG 0.486961 7_3:+73406574 Msa1122860:three_prime_UTR
AGAGTTGTAGAATTGAACTT+AGG 0.498305 7_3:+73406862 Msa1122860:three_prime_UTR
CAAATTGGGTCACATATTGA+AGG 0.498468 7_3:+73399141 Msa1122860:CDS
CTTACAAATTAATTGATCAC+TGG 0.508472 7_3:-73406672 None:intergenic
TGCTGAAAATAGGAATATAA+GGG 0.509100 7_3:+73406293 Msa1122860:three_prime_UTR
ATCACTGGATGGAACAAAGT+TGG 0.510777 7_3:-73406657 None:intergenic
TGATTAGAACAAGAAGTTGA+AGG 0.514698 7_3:-73405787 None:intergenic
ATCAAAGAGATAAAGTTTGG+AGG 0.516104 7_3:-73405845 None:intergenic
GATTAGAACAAGAAGTTGAA+GGG 0.519595 7_3:-73405786 None:intergenic
ATTTATATATTAATGATGAA+AGG 0.523166 7_3:+73406376 Msa1122860:three_prime_UTR
ATTGGTAGTAGTGAATTCCT+TGG 0.529516 7_3:+73406929 Msa1122860:three_prime_UTR
CAAGGGACAACTTTATGTTG+TGG 0.530035 7_3:+73406191 Msa1122860:three_prime_UTR
GTGACAGGATGGAACAAAGT+TGG 0.530217 7_3:-73399394 None:intergenic
ATGCAAAGGTTGTGAGAGGC+AGG 0.537372 7_3:-73405694 None:intergenic
CAAATTAATTGATCACTGGA+TGG 0.540924 7_3:-73406668 None:intergenic
TGAAAAGCAGATACCAGAAA+AGG 0.545163 7_3:+73405446 Msa1122860:intron
CATATTGAAGGCTATTTGTG+TGG 0.549161 7_3:+73399153 Msa1122860:CDS
TGTTGGCTCGAGATTACTAT+GGG 0.552161 7_3:+73406535 Msa1122860:three_prime_UTR
AGGTTGTGAGAGGCAGGTGG+AGG 0.559115 7_3:-73405688 None:intergenic
CTTCTTGTTCTAATCAAGGT+GGG 0.559628 7_3:+73405794 Msa1122860:three_prime_UTR
GATGAAAGGTATTACAAAAG+GGG 0.559891 7_3:+73406390 Msa1122860:three_prime_UTR
AGAAGTAAAAGATTTGGGTG+AGG 0.564111 7_3:+73406476 Msa1122860:three_prime_UTR
AAACAATTAGTAGAGTCTGA+TGG 0.567913 7_3:+73399073 Msa1122860:CDS
GGGTTGTGATCATGTGGTGA+TGG 0.571859 7_3:-73405766 None:intergenic
AAAAGGTGTAAGGGACTAAG+TGG 0.572227 7_3:+73405463 Msa1122860:exon
GATGGATATGAATAAGATAG+TGG 0.582410 7_3:+73405546 Msa1122860:three_prime_UTR
CAAGATTACTACGGATGTGA+AGG 0.582722 7_3:+73399280 Msa1122860:CDS
TCTACTTCTATTGTGAAGAC+AGG 0.586419 7_3:+73399311 Msa1122860:CDS
CAAATTAACTCGTGACAGGA+TGG 0.587347 7_3:-73399405 None:intergenic
GCCAAAATCTACAAACACTA+CGG 0.595515 7_3:-73405651 None:intergenic
CTTACAAATTAACTCGTGAC+AGG 0.596567 7_3:-73399409 None:intergenic
TCTACAACTCTGCAACGGAT+AGG 0.597109 7_3:-73406850 None:intergenic
CTACTTCTATTATGAAAGCA+GGG 0.600724 7_3:+73406575 Msa1122860:three_prime_UTR
AGATACCAGAAAAGGTGTAA+GGG 0.606188 7_3:+73405454 Msa1122860:intron
GGAAGGCGCACCCTCATGCA+AGG 0.606710 7_3:+73406775 Msa1122860:intron
ACTTCTTGTTCTAATCAAGG+TGG 0.607280 7_3:+73405793 Msa1122860:three_prime_UTR
TGAAACAAAATCATATCCAA+AGG 0.608051 7_3:-73406985 None:intergenic
ATCATGTTAAAGGATGATTG+TGG 0.624512 7_3:+73406135 Msa1122860:three_prime_UTR
TTGTTGGCTCAAGATTACTA+CGG 0.627281 7_3:+73399271 Msa1122860:CDS
TATAAGCTTGATCAAGAATG+GGG 0.627945 7_3:+73399181 Msa1122860:CDS
TATAAGCTTGATCAAGAATG+GGG 0.627945 7_3:+73406444 Msa1122860:three_prime_UTR
CAAAGGTTGTGAGAGGCAGG+TGG 0.633368 7_3:-73405691 None:intergenic
AAGCAATTAGTAGAGTATGA+CGG 0.642680 7_3:+73406336 Msa1122860:three_prime_UTR
GATGATATAATACATTACAA+GGG 0.643392 7_3:+73406174 Msa1122860:three_prime_UTR
TCAATTCTACAACTCTGCAA+CGG 0.644892 7_3:-73406855 None:intergenic
GTATGACGGAGGTCTATATG+TGG 0.662076 7_3:+73406350 Msa1122860:three_prime_UTR
TAATACGAGAATCCGAGCCG+AGG 0.671509 7_3:+73405876 Msa1122860:three_prime_UTR
GTTGAAGGGTTGTGATCATG+TGG 0.682135 7_3:-73405772 None:intergenic
GGATGGAACAAAGTTGGACA+AGG 0.682403 7_3:-73399388 None:intergenic
TGGAATGCAAAGGTTGTGAG+AGG 0.687706 7_3:-73405698 None:intergenic
AGAGTGTGCTATGAATGCGA+TGG 0.712794 7_3:+73405528 Msa1122860:three_prime_UTR
CAATTAGTAGAGTATGACGG+AGG 0.746558 7_3:+73406339 Msa1122860:three_prime_UTR
CATGTGGTGATGGTTCAATG+CGG 0.842243 7_3:-73405756 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATTAATTTATTAA+AGG + chr7_3:73400953-73400972 Msa1122860:intron 0.0%
!! ATATTTAAAAAAATATATAA+CGG + chr7_3:73402574-73402593 Msa1122860:intron 0.0%
!! AAAAATAAATAAATAAATAA+AGG + chr7_3:73403196-73403215 Msa1122860:intron 0.0%
!! AGTACTTTATATAATAAAAT+TGG - chr7_3:73400028-73400047 None:intergenic 10.0%
!!! TTTATTTTTATTGTCTTTTT+TGG + chr7_3:73401683-73401702 Msa1122860:intron 10.0%
!!! AAAAAGTTCAATTTTAATAA+AGG + chr7_3:73402165-73402184 Msa1122860:intron 10.0%
!!! ATAGATTTAATCTTATTTTT+TGG + chr7_3:73402319-73402338 Msa1122860:intron 10.0%
!! TTCATTTAATAATAAAGTTT+GGG - chr7_3:73402485-73402504 None:intergenic 10.0%
!! TTTCATTTAATAATAAAGTT+TGG - chr7_3:73402486-73402505 None:intergenic 10.0%
!! ATCCTTAAAAAAAAATATTA+TGG + chr7_3:73402811-73402830 Msa1122860:intron 10.0%
!!! AACCATAATATTTTTTTTTA+AGG - chr7_3:73402816-73402835 None:intergenic 10.0%
!! TTAATTAATTACTTGTAAAT+AGG + chr7_3:73403225-73403244 Msa1122860:intron 10.0%
!! TAATTAATTACTTGTAAATA+GGG + chr7_3:73403226-73403245 Msa1122860:intron 10.0%
!! TATAAAGTATATAAAATATC+GGG + chr7_3:73403324-73403343 Msa1122860:intron 10.0%
!!! AAGATTTACTTTTTTTTTTA+AGG + chr7_3:73403895-73403914 Msa1122860:intron 10.0%
!!! AATTAAATTTTCTTTAAAAC+TGG - chr7_3:73404251-73404270 None:intergenic 10.0%
!!! AGAAAATTTAATTAATTTGA+TGG + chr7_3:73404258-73404277 Msa1122860:intron 10.0%
!! AAAATGTCATTAATTTAAAA+TGG + chr7_3:73404291-73404310 Msa1122860:intron 10.0%
!!! AAATGTCATTAATTTAAAAT+GGG + chr7_3:73404292-73404311 Msa1122860:intron 10.0%
!!! AATTAAAAGTATAATAAAAC+GGG - chr7_3:73405368-73405387 None:intergenic 10.0%
!! ATTTATATATTAATGATGAA+AGG + chr7_3:73406376-73406395 Msa1122860:three_prime_UTR 10.0%
!! TAATATAAAAATTTACATTC+AGG + chr7_3:73406754-73406773 Msa1122860:intron 10.0%
!!! TTTTACATTTGTTGTAATTT+TGG - chr7_3:73402111-73402130 None:intergenic 15.0%
!! ATTAAATCTATATGTGAAAT+TGG - chr7_3:73402310-73402329 None:intergenic 15.0%
!!! ATATTTTTTTGTCCAAAAAA+AGG + chr7_3:73402719-73402738 Msa1122860:intron 15.0%
!!! TATTTTTTTGTCCAAAAAAA+GGG + chr7_3:73402720-73402739 Msa1122860:intron 15.0%
!!! GTGTAAATATACTATTTTTA+TGG + chr7_3:73402783-73402802 Msa1122860:intron 15.0%
!!! TTGATAACTAATGAAATTAT+TGG - chr7_3:73402964-73402983 None:intergenic 15.0%
!!! ATAGTTAAAAGAAAGTATTA+AGG - chr7_3:73403004-73403023 None:intergenic 15.0%
!!! TTTTTTTGAACAAATCAAAA+TGG - chr7_3:73403533-73403552 None:intergenic 15.0%
!! ATAATTAAATAAAATCCTCA+AGG + chr7_3:73403596-73403615 Msa1122860:intron 15.0%
!!! TTTACTTTTTTTTTTAAGGA+TGG + chr7_3:73403899-73403918 Msa1122860:intron 15.0%
!!! AATGTCATTAATTTAAAATG+GGG + chr7_3:73404293-73404312 Msa1122860:intron 15.0%
!! AATAAATATGATTGTTATAG+TGG + chr7_3:73404364-73404383 Msa1122860:intron 15.0%
!!! TATGTTTTTTATGAATAAAC+AGG - chr7_3:73405177-73405196 None:intergenic 15.0%
!! TGTAAATTTCAAATATACTA+TGG + chr7_3:73405234-73405253 Msa1122860:intron 15.0%
!! AAGATTTGTATTTAAATTCA+TGG + chr7_3:73406823-73406842 Msa1122860:three_prime_UTR 15.0%
!!! TATGATTTTGTTTCAATATT+AGG + chr7_3:73406993-73407012 Msa1122860:three_prime_UTR 15.0%
!! TCATACCAATTATTAAAAAG+CGG - chr7_3:73399654-73399673 None:intergenic 20.0%
!! TTTCACAAAATCTTATTCAA+AGG - chr7_3:73399683-73399702 None:intergenic 20.0%
!! ACATTATTATTCAAACATTG+TGG + chr7_3:73399932-73399951 Msa1122860:intron 20.0%
!! TTTGGATGAAAAATTATTAG+AGG - chr7_3:73400160-73400179 None:intergenic 20.0%
!! CTTATTTGGAAATTTATTCA+AGG + chr7_3:73400603-73400622 Msa1122860:intron 20.0%
!! ATTGATATCTAAGAGAAATT+TGG + chr7_3:73400850-73400869 Msa1122860:intron 20.0%
!! AAGATTGTATTATAATGTGT+TGG - chr7_3:73400980-73400999 None:intergenic 20.0%
!! ATATAAATATGCATCTTAGA+AGG - chr7_3:73401172-73401191 None:intergenic 20.0%
!!! TAAAGAATCTTTTGTACTAT+TGG + chr7_3:73401397-73401416 Msa1122860:intron 20.0%
!! GTTGTATTCTATAAATCTTA+AGG + chr7_3:73401481-73401500 Msa1122860:intron 20.0%
!! TTTGATCAAACAAAGAAATT+TGG - chr7_3:73401571-73401590 None:intergenic 20.0%
!!! ATTTTTATTGTCTTTTTTGG+AGG + chr7_3:73401686-73401705 Msa1122860:intron 20.0%
!!! TTTTTATTGTCTTTTTTGGA+GGG + chr7_3:73401687-73401706 Msa1122860:intron 20.0%
!!! ATTGTTAGAATTGATTAGTT+AGG + chr7_3:73401748-73401767 Msa1122860:intron 20.0%
!!! TTAGAAGTTGGTTATATAAT+TGG + chr7_3:73401806-73401825 Msa1122860:intron 20.0%
!! ATCCTATTTATAAGACTTAA+TGG - chr7_3:73401837-73401856 None:intergenic 20.0%
!! TCGAATATTACATTATCAAA+AGG + chr7_3:73402053-73402072 Msa1122860:intron 20.0%
!! AAGAGATGCAAAATATAATT+AGG + chr7_3:73402218-73402237 Msa1122860:intron 20.0%
!! AATTCAATGTGAATATAAGA+TGG - chr7_3:73402681-73402700 None:intergenic 20.0%
!!! TATTTTTTTCTCCCTTTTTT+TGG - chr7_3:73402734-73402753 None:intergenic 20.0%
!!! CAACTATATTTTGAACAAAT+CGG - chr7_3:73402764-73402783 None:intergenic 20.0%
!! GTTTACAAATCAAATTGAAA+AGG + chr7_3:73402833-73402852 Msa1122860:intron 20.0%
!! CTTCAAAAATTAAATTAGTG+TGG - chr7_3:73402864-73402883 None:intergenic 20.0%
!! AAGTATTAAGGAAATAATAG+TGG - chr7_3:73402992-73403011 None:intergenic 20.0%
!!! CTATATCATATTTTTGTTAG+TGG - chr7_3:73403093-73403112 None:intergenic 20.0%
!! TATGCTTTGATTCATAAATT+CGG - chr7_3:73403166-73403185 None:intergenic 20.0%
!! TGAACACTACAAAATTTAAA+AGG - chr7_3:73404623-73404642 None:intergenic 20.0%
!! TTACTACTTGATTATGAAAA+AGG + chr7_3:73404680-73404699 Msa1122860:intron 20.0%
!! ATCAAAACAATGAAAAATCA+AGG - chr7_3:73405070-73405089 None:intergenic 20.0%
!! TCGAAAATTAAAATAAGATG+TGG - chr7_3:73405210-73405229 None:intergenic 20.0%
!!! GTATTATTTTATCCTTTGAA+AGG + chr7_3:73405286-73405305 Msa1122860:intron 20.0%
!! ACGAAAATATGTATACATAA+AGG + chr7_3:73405335-73405354 Msa1122860:intron 20.0%
!!! TGAATTTTCTTTATATAGAG+AGG + chr7_3:73405401-73405420 Msa1122860:intron 20.0%
!!! AGTAGAAAATAATTTTGATG+TGG - chr7_3:73405721-73405740 None:intergenic 20.0%
!! AAAGGAAAATATCATGTTAA+AGG + chr7_3:73406125-73406144 Msa1122860:three_prime_UTR 20.0%
!! TGATGATATAATACATTACA+AGG + chr7_3:73406173-73406192 Msa1122860:three_prime_UTR 20.0%
!! GATGATATAATACATTACAA+GGG + chr7_3:73406174-73406193 Msa1122860:three_prime_UTR 20.0%
!! ATAAAAATTTACATTCAGGA+AGG + chr7_3:73406758-73406777 Msa1122860:intron 20.0%
!!! GAATCCTACTTTTTAATTAT+TGG + chr7_3:73406951-73406970 Msa1122860:three_prime_UTR 20.0%
!! CATACCAATAATTAAAAAGT+AGG - chr7_3:73406958-73406977 None:intergenic 20.0%
!!! AATAATTTTGAAACTGAACT+TGG + chr7_3:73407041-73407060 Msa1122860:three_prime_UTR 20.0%
!!! TTATCTTTGTGTTCATTTTT+AGG + chr7_3:73407076-73407095 Msa1122860:three_prime_UTR 20.0%
!!! TTACCACAACATAAGTTTTT+TGG - chr7_3:73399016-73399035 None:intergenic 25.0%
! TAAAAAGAGTAATATCTGGA+AGG + chr7_3:73399033-73399052 Msa1122860:CDS 25.0%
!!! GTAGTTGATTTGTATATTGA+CGG + chr7_3:73399106-73399125 Msa1122860:CDS 25.0%
! TTTATAAGCTTGATCAAGAA+TGG + chr7_3:73399179-73399198 Msa1122860:CDS 25.0%
! TTATAAGCTTGATCAAGAAT+GGG + chr7_3:73399180-73399199 Msa1122860:CDS 25.0%
! ATGGTTAGATGTAAAAGATT+TGG + chr7_3:73399207-73399226 Msa1122860:intron 25.0%
! TGGTTAGATGTAAAAGATTT+GGG + chr7_3:73399208-73399227 Msa1122860:intron 25.0%
! CATACCAATTATTAAAAAGC+GGG - chr7_3:73399653-73399672 None:intergenic 25.0%
! TCGACATTAAGTACTAATTT+AGG + chr7_3:73400051-73400070 Msa1122860:intron 25.0%
! AAAATTATTAGAGGAACTCT+TGG - chr7_3:73400151-73400170 None:intergenic 25.0%
! AGTTATAGAGTTTGAGTATT+TGG - chr7_3:73400178-73400197 None:intergenic 25.0%
! TAACATTCTTGTACATACAA+TGG - chr7_3:73400538-73400557 None:intergenic 25.0%
!! TTTTTGTAGCACAGTATAAA+AGG - chr7_3:73400578-73400597 None:intergenic 25.0%
! CTACAAAAAATGCACTTATT+TGG + chr7_3:73400589-73400608 Msa1122860:intron 25.0%
! GAAATTTATTCAAGGTTCAA+TGG + chr7_3:73400611-73400630 Msa1122860:intron 25.0%
! TATTACCAATCTCAATCATT+TGG - chr7_3:73400651-73400670 None:intergenic 25.0%
! TCCAAACAAAAATTAATCCT+TGG - chr7_3:73400718-73400737 None:intergenic 25.0%
! GTTAGAAATATATAGCAACT+AGG - chr7_3:73400766-73400785 None:intergenic 25.0%
! ATTATATGAAATTCATCACG+TGG + chr7_3:73401000-73401019 Msa1122860:intron 25.0%
! AATAGTATCTTCAGATAGAA+AGG + chr7_3:73401025-73401044 Msa1122860:intron 25.0%
! ATAGTATCTTCAGATAGAAA+GGG + chr7_3:73401026-73401045 Msa1122860:intron 25.0%
! TTAGATACTGAAATAGAACT+TGG + chr7_3:73401098-73401117 Msa1122860:intron 25.0%
! TCAAAAGGAACATAAGTATT+CGG - chr7_3:73401275-73401294 None:intergenic 25.0%
!!! AAGGAAAATGTTTTTGCTAT+TGG + chr7_3:73401336-73401355 Msa1122860:intron 25.0%
!!! AAATGTTTTTGCTATTGGAA+TGG + chr7_3:73401341-73401360 Msa1122860:intron 25.0%
! GATTAATTGAAAGACACTAT+AGG + chr7_3:73401506-73401525 Msa1122860:intron 25.0%
! ATGAAAATCACAAAATCTCA+AGG - chr7_3:73401606-73401625 None:intergenic 25.0%
! AACTTCTAACTTTACTAACT+AGG - chr7_3:73401795-73401814 None:intergenic 25.0%
! TAGTTAGTAAAGTTAGAAGT+TGG + chr7_3:73401794-73401813 Msa1122860:intron 25.0%
!! GTCCATTAAGTCTTATAAAT+AGG + chr7_3:73401832-73401851 Msa1122860:intron 25.0%
! TTATAGTCAACTGTAAATGT+TGG + chr7_3:73402022-73402041 Msa1122860:intron 25.0%
!! AATTGACGAAAACAAGTTTT+AGG - chr7_3:73402511-73402530 None:intergenic 25.0%
! AATCAAGAAAATGATTACGA+AGG + chr7_3:73403296-73403315 Msa1122860:intron 25.0%
! GTTATTCAATGACAATTATG+AGG - chr7_3:73403696-73403715 None:intergenic 25.0%
! TTATTTCACAACAAATGCAT+TGG + chr7_3:73404036-73404055 Msa1122860:intron 25.0%
!! AATGATTTTTGCAATGTGTT+TGG + chr7_3:73404183-73404202 Msa1122860:intron 25.0%
! TAAAAGATTAATAATCGGTG+AGG - chr7_3:73404455-73404474 None:intergenic 25.0%
! ACGCGTAAAAGATTAATAAT+CGG - chr7_3:73404460-73404479 None:intergenic 25.0%
! AAAAACGATTGAGATGAAAA+AGG - chr7_3:73404596-73404615 None:intergenic 25.0%
! AACTGATAAAATAGTCGAAT+AGG + chr7_3:73405310-73405329 Msa1122860:intron 25.0%
! AAATCTTCTTGAAGATTTGT+GGG + chr7_3:73405582-73405601 Msa1122860:three_prime_UTR 25.0%
!! CATCAAATCCAAAACTTTTT+CGG - chr7_3:73405908-73405927 None:intergenic 25.0%
! AGTCATCATGAAGATAAAAT+TGG + chr7_3:73405967-73405986 Msa1122860:three_prime_UTR 25.0%
!! ATTTTCCTTTTCTCCAATAT+TGG - chr7_3:73406115-73406134 None:intergenic 25.0%
! ACTTTATGTTGTGGATAAAA+TGG + chr7_3:73406200-73406219 Msa1122860:three_prime_UTR 25.0%
! CTTTATGTTGTGGATAAAAT+GGG + chr7_3:73406201-73406220 Msa1122860:three_prime_UTR 25.0%
!! ATAAAATGGGAACAATTTTC+TGG + chr7_3:73406214-73406233 Msa1122860:three_prime_UTR 25.0%
! TGCTGAAAATAGGAATATAA+GGG + chr7_3:73406293-73406312 Msa1122860:three_prime_UTR 25.0%
!!! ATGATGAAAGGTATTACAAA+AGG + chr7_3:73406388-73406407 Msa1122860:three_prime_UTR 25.0%
!!! TGATGAAAGGTATTACAAAA+GGG + chr7_3:73406389-73406408 Msa1122860:three_prime_UTR 25.0%
! TTTATAAGCTTGATCAAGAA+TGG + chr7_3:73399179-73399198 Msa1122860:CDS 25.0%
! TTATAAGCTTGATCAAGAAT+GGG + chr7_3:73399180-73399199 Msa1122860:CDS 25.0%
! ATGGTTAGAAGTAAAAGATT+TGG + chr7_3:73406470-73406489 Msa1122860:three_prime_UTR 25.0%
! TGGTTAGAAGTAAAAGATTT+GGG + chr7_3:73406471-73406490 Msa1122860:three_prime_UTR 25.0%
! CTTACAAATTAATTGATCAC+TGG - chr7_3:73406675-73406694 None:intergenic 25.0%
! ATACAAATCTTCAATGAAGT+TGG - chr7_3:73406814-73406833 None:intergenic 25.0%
! AATTAAAAAGTAGGATTCCA+AGG - chr7_3:73406949-73406968 None:intergenic 25.0%
! TGAAACAAAATCATATCCAA+AGG - chr7_3:73406988-73407007 None:intergenic 25.0%
!!! GTGTTCATTTTTAGGAATAA+TGG + chr7_3:73407084-73407103 Msa1122860:three_prime_UTR 25.0%
TCACCAAAAAACTTATGTTG+TGG + chr7_3:73399010-73399029 Msa1122860:CDS 30.0%
GTGGTAAAAAGAGTAATATC+TGG + chr7_3:73399029-73399048 Msa1122860:CDS 30.0%
AAACAATTAGTAGAGTCTGA+TGG + chr7_3:73399073-73399092 Msa1122860:CDS 30.0%
ATTTGTATATTGACGGTGAA+AGG + chr7_3:73399113-73399132 Msa1122860:CDS 30.0%
! GGTGAAAGGTTTTACAAATT+GGG + chr7_3:73399127-73399146 Msa1122860:CDS 30.0%
TATAAGCTTGATCAAGAATG+GGG + chr7_3:73399181-73399200 Msa1122860:CDS 30.0%
TTTCAACTTGGAGAATTTAG+AGG + chr7_3:73399342-73399361 Msa1122860:CDS 30.0%
CCACAAGACAATAAAATCAA+TGG - chr7_3:73399461-73399480 None:intergenic 30.0%
!!! CCATTGATTTTATTGTCTTG+TGG + chr7_3:73399458-73399477 Msa1122860:intron 30.0%
TTCTTCCATACCTTATATGA+GGG - chr7_3:73399542-73399561 None:intergenic 30.0%
CGACTTATCATCAATAAGTT+TGG - chr7_3:73399568-73399587 None:intergenic 30.0%
!!! GAATCCCGCTTTTTAATAAT+TGG + chr7_3:73399646-73399665 Msa1122860:intron 30.0%
GTTCACTTATTGAGTTAATG+AGG + chr7_3:73399715-73399734 Msa1122860:intron 30.0%
AGGAACAATAAGAGTTAATG+AGG + chr7_3:73399735-73399754 Msa1122860:intron 30.0%
AAGACATGTTTGACATAACA+TGG - chr7_3:73399825-73399844 None:intergenic 30.0%
AAACATGTCTTGCTTTGTAT+GGG + chr7_3:73399834-73399853 Msa1122860:intron 30.0%
AAATTAAGTATAGAGGAGTG+AGG - chr7_3:73400470-73400489 None:intergenic 30.0%
CCAAAGCAAATTAAGTATAG+AGG - chr7_3:73400477-73400496 None:intergenic 30.0%
!! CCTCTATACTTAATTTGCTT+TGG + chr7_3:73400474-73400493 Msa1122860:intron 30.0%
AGAAAGAAAAAGGTAAGTGA+AGG - chr7_3:73400507-73400526 None:intergenic 30.0%
TTATTCAAGGTTCAATGGAT+TGG + chr7_3:73400616-73400635 Msa1122860:intron 30.0%
AACTACCAAATGATTGAGAT+TGG + chr7_3:73400643-73400662 Msa1122860:intron 30.0%
! GCCAAGGATTAATTTTTGTT+TGG + chr7_3:73400714-73400733 Msa1122860:intron 30.0%
! TTAAAATAGCATTAGCTCTC+TGG - chr7_3:73400822-73400841 None:intergenic 30.0%
TAGTATCTTCAGATAGAAAG+GGG + chr7_3:73401027-73401046 Msa1122860:intron 30.0%
!! TCTTTGCTATTGATGTCAAT+TGG + chr7_3:73401141-73401160 Msa1122860:intron 30.0%
!! TTCCTTTTGAGAATGATTTG+TGG + chr7_3:73401285-73401304 Msa1122860:intron 30.0%
TGCACAAACATGTAAAACTA+AGG + chr7_3:73401317-73401336 Msa1122860:intron 30.0%
!! CTATCTTTTTAACTGTAGTG+CGG - chr7_3:73401538-73401557 None:intergenic 30.0%
GTTAAAAAGATAGGCACATT+TGG + chr7_3:73401545-73401564 Msa1122860:intron 30.0%
! TCTTTGTTTGATCAAATCTC+TGG + chr7_3:73401575-73401594 Msa1122860:intron 30.0%
! TTGTGATTTTCATTTGTGCT+TGG + chr7_3:73401613-73401632 Msa1122860:intron 30.0%
TGGATATATTGTTGCTAAAG+TGG + chr7_3:73401646-73401665 Msa1122860:intron 30.0%
ACAATCCAACTAATTATGGT+TGG + chr7_3:73401721-73401740 Msa1122860:intron 30.0%
TCTTACCAACCATAATTAGT+TGG - chr7_3:73401729-73401748 None:intergenic 30.0%
TATAGCAAGTCAAAGACATA+AGG + chr7_3:73403108-73403127 Msa1122860:intron 30.0%
ATAGATAATCTCCTACTTGT+TGG - chr7_3:73403134-73403153 None:intergenic 30.0%
!! GCATTTGTTGTGAAATAATC+TGG - chr7_3:73404034-73404053 None:intergenic 30.0%
ATCATTAACATATCACCCTA+GGG - chr7_3:73404114-73404133 None:intergenic 30.0%
TATCATTAACATATCACCCT+AGG - chr7_3:73404115-73404134 None:intergenic 30.0%
! AATGTGTTTGGTTCAATTCA+TGG + chr7_3:73404195-73404214 Msa1122860:intron 30.0%
!! ATGGCTATTTTCTATTGGTT+TGG + chr7_3:73404394-73404413 Msa1122860:intron 30.0%
!!! TGGCTATTTTCTATTGGTTT+GGG + chr7_3:73404395-73404414 Msa1122860:intron 30.0%
ATCAAATAAGTACCTGAAGA+AGG - chr7_3:73404572-73404591 None:intergenic 30.0%
!!! TGCTATCCACTTTTTAAGTT+AGG + chr7_3:73404747-73404766 Msa1122860:intron 30.0%
!!! GCTATCCACTTTTTAAGTTA+GGG + chr7_3:73404748-73404767 Msa1122860:intron 30.0%
AACAACCCTAACTTAAAAAG+TGG - chr7_3:73404756-73404775 None:intergenic 30.0%
AATACGACAAGGGATAATAA+GGG - chr7_3:73404789-73404808 None:intergenic 30.0%
AAATACGACAAGGGATAATA+AGG - chr7_3:73404790-73404809 None:intergenic 30.0%
TCTGAACATGTGTTTATAAG+TGG + chr7_3:73404909-73404928 Msa1122860:intron 30.0%
TTGCTTCTTGTTAGAAATCT+TGG - chr7_3:73404989-73405008 None:intergenic 30.0%
AGAATAAACTAAACCATGCT+TGG - chr7_3:73405045-73405064 None:intergenic 30.0%
! TTTTATCAGTTGCCTTTCAA+AGG - chr7_3:73405301-73405320 None:intergenic 30.0%
GATGGATATGAATAAGATAG+TGG + chr7_3:73405546-73405565 Msa1122860:three_prime_UTR 30.0%
CAAATCTTCTTGAAGATTTG+TGG + chr7_3:73405581-73405600 Msa1122860:three_prime_UTR 30.0%
!!! AATCGTAGTGTTCAGTTTTT+TGG - chr7_3:73405617-73405636 None:intergenic 30.0%
!! AATTTTGATGTGGAATGCAA+AGG - chr7_3:73405711-73405730 None:intergenic 30.0%
GATTAGAACAAGAAGTTGAA+GGG - chr7_3:73405789-73405808 None:intergenic 30.0%
TGATTAGAACAAGAAGTTGA+AGG - chr7_3:73405790-73405809 None:intergenic 30.0%
TCAACTTCTTGTTCTAATCA+AGG + chr7_3:73405790-73405809 Msa1122860:three_prime_UTR 30.0%
ATCAAAGAGATAAAGTTTGG+AGG - chr7_3:73405848-73405867 None:intergenic 30.0%
GAGATCAAAGAGATAAAGTT+TGG - chr7_3:73405851-73405870 None:intergenic 30.0%
!!! AACTTTTTCGGTATTTTCCT+CGG - chr7_3:73405896-73405915 None:intergenic 30.0%
! GGAAAATACCGAAAAAGTTT+TGG + chr7_3:73405897-73405916 Msa1122860:three_prime_UTR 30.0%
!!! AGTGATCTTGTTTTCTATTC+AGG + chr7_3:73406041-73406060 Msa1122860:three_prime_UTR 30.0%
!!! GTGATCTTGTTTTCTATTCA+GGG + chr7_3:73406042-73406061 Msa1122860:three_prime_UTR 30.0%
TGTTTCCAATATTGGAGAAA+AGG + chr7_3:73406107-73406126 Msa1122860:three_prime_UTR 30.0%
ATCATGTTAAAGGATGATTG+TGG + chr7_3:73406135-73406154 Msa1122860:three_prime_UTR 30.0%
TGAAAATTGAACCAACTTCA+AGG - chr7_3:73398993-73399012 None:intergenic 30.0%
! TATTCCTATTTTCAGCACAA+TGG - chr7_3:73406290-73406309 None:intergenic 30.0%
GTGCTGAAAATAGGAATATA+AGG + chr7_3:73406292-73406311 Msa1122860:three_prime_UTR 30.0%
AAGCAATTAGTAGAGTATGA+CGG + chr7_3:73406336-73406355 Msa1122860:three_prime_UTR 30.0%
!! GATGAAAGGTATTACAAAAG+GGG + chr7_3:73406390-73406409 Msa1122860:three_prime_UTR 30.0%
TATAAGCTTGATCAAGAATG+GGG + chr7_3:73399181-73399200 Msa1122860:CDS 30.0%
! AGACACAAATTTTGCATTGT+TGG + chr7_3:73406518-73406537 Msa1122860:three_prime_UTR 30.0%
TCTACTTCTATTATGAAAGC+AGG + chr7_3:73406574-73406593 Msa1122860:three_prime_UTR 30.0%
CTACTTCTATTATGAAAGCA+GGG + chr7_3:73406575-73406594 Msa1122860:three_prime_UTR 30.0%
CAAATTAATTGATCACTGGA+TGG - chr7_3:73406671-73406690 None:intergenic 30.0%
AGAGTTGTAGAATTGAACTT+AGG + chr7_3:73406862-73406881 Msa1122860:three_prime_UTR 30.0%
!! ATTGGTATGATTTGTTCCTT+TGG + chr7_3:73399664-73399683 Msa1122860:intron 30.0%
!! CAATGCTTTGTCTTTGAAGT+TGG + chr7_3:73398979-73398998 Msa1122860:CDS 35.0%
! CGGTGAAAGGTTTTACAAAT+TGG + chr7_3:73399126-73399145 Msa1122860:CDS 35.0%
CAAATTGGGTCACATATTGA+AGG + chr7_3:73399141-73399160 Msa1122860:CDS 35.0%
CATATTGAAGGCTATTTGTG+TGG + chr7_3:73399153-73399172 Msa1122860:CDS 35.0%
TTGATCAAGAATGGGGTAAA+TGG + chr7_3:73399188-73399207 Msa1122860:intron 35.0%
!! GGTGATGTTTCGTTTGTTTT+GGG + chr7_3:73399229-73399248 Msa1122860:CDS 35.0%
AGACTCAAACATTGCATTGT+TGG + chr7_3:73399255-73399274 Msa1122860:CDS 35.0%
!! TTGTTGGCTCAAGATTACTA+CGG + chr7_3:73399271-73399290 Msa1122860:CDS 35.0%
TCTACTTCTATTGTGAAGAC+AGG + chr7_3:73399311-73399330 Msa1122860:CDS 35.0%
!!! CTAAGCCAGCTAACATTTTT+TGG + chr7_3:73399365-73399384 Msa1122860:CDS 35.0%
CTTACAAATTAACTCGTGAC+AGG - chr7_3:73399412-73399431 None:intergenic 35.0%
GTTCTTCCATACCTTATATG+AGG - chr7_3:73399543-73399562 None:intergenic 35.0%
TGTCTTATAGCTTGATGCAT+AGG + chr7_3:73399789-73399808 Msa1122860:intron 35.0%
CAAACATGTCTTGCTTTGTA+TGG + chr7_3:73399833-73399852 Msa1122860:intron 35.0%
AAGTAGGAGTTACTTGACTT+GGG - chr7_3:73400096-73400115 None:intergenic 35.0%
AGAATACCATCAATCACAAC+TGG - chr7_3:73400122-73400141 None:intergenic 35.0%
! TTGTGATTGATGGTATTCTC+TGG + chr7_3:73400123-73400142 Msa1122860:intron 35.0%
TCAAAGGTTAAATCGAAGCT+TGG - chr7_3:73400207-73400226 None:intergenic 35.0%
CTCATCATCATCATCTTCAA+AGG - chr7_3:73400223-73400242 None:intergenic 35.0%
! CTTTGAAGATGATGATGATG+AGG + chr7_3:73400221-73400240 Msa1122860:intron 35.0%
! TGATGATGATGAGGTTGAAT+TGG + chr7_3:73400230-73400249 Msa1122860:intron 35.0%
GTTGAATTGGATGAAGAAGA+GGG + chr7_3:73400243-73400262 Msa1122860:intron 35.0%
! AGAACATTTTCCAAGCAATG+TGG - chr7_3:73400286-73400305 None:intergenic 35.0%
TTGCTTGGAAAATGTTCTTG+AGG + chr7_3:73400288-73400307 Msa1122860:intron 35.0%
GGAAGATGACAGAAAGAAAA+AGG - chr7_3:73400517-73400536 None:intergenic 35.0%
TCCGTTTAGTCAAGTACTAA+CGG + chr7_3:73400926-73400945 Msa1122860:intron 35.0%
ACCGTTAGTACTTGACTAAA+CGG - chr7_3:73400930-73400949 None:intergenic 35.0%
GATACTGAAATAGAACTTGG+TGG + chr7_3:73401101-73401120 Msa1122860:intron 35.0%
AACATAAGTATTCGGCACAA+GGG - chr7_3:73401267-73401286 None:intergenic 35.0%
CTCCACAAATCATTCTCAAA+AGG - chr7_3:73401290-73401309 None:intergenic 35.0%
TCATACTCAACAAAACATGC+AGG - chr7_3:73401424-73401443 None:intergenic 35.0%
!! TGTTTTGTTGAGTATGAGTC+AGG + chr7_3:73401427-73401446 Msa1122860:intron 35.0%
CGCACTACAGTTAAAAAGAT+AGG + chr7_3:73401536-73401555 Msa1122860:intron 35.0%
!!! GTCTTTTTTGGAGGGAAATT+CGG + chr7_3:73401695-73401714 Msa1122860:intron 35.0%
GTGGACAATCCAACTAATTA+TGG + chr7_3:73401717-73401736 Msa1122860:intron 35.0%
TGCACTCTTACTGATGTTTA+TGG + chr7_3:73401952-73401971 Msa1122860:intron 35.0%
AGACAGTTGTGAAGAATCAT+AGG - chr7_3:73401995-73402014 None:intergenic 35.0%
GTCAACTGTAAATGTTGGAA+TGG + chr7_3:73402027-73402046 Msa1122860:intron 35.0%
AATAAAGTTTGGGTGCATGT+TGG - chr7_3:73402475-73402494 None:intergenic 35.0%
!!! TAATTTTTGAAGCCTGCACA+CGG + chr7_3:73402872-73402891 Msa1122860:intron 35.0%
CTATAACAGTCCATCAACTT+TGG + chr7_3:73403020-73403039 Msa1122860:intron 35.0%
TTAGATTGCTCCAAAGTTGA+TGG - chr7_3:73403033-73403052 None:intergenic 35.0%
ACTTTCTCATCTTGATTGTG+CGG + chr7_3:73403477-73403496 Msa1122860:intron 35.0%
!!! TATTTGTTTTGTGCTCCTTG+AGG - chr7_3:73403614-73403633 None:intergenic 35.0%
ATCTGATCCAAACGAAATGT+CGG + chr7_3:73403728-73403747 Msa1122860:intron 35.0%
TTTAGATCCGACATTTCGTT+TGG - chr7_3:73403738-73403757 None:intergenic 35.0%
!! TTGTTATAGTGGATGACACA+TGG + chr7_3:73404375-73404394 Msa1122860:intron 35.0%
!! GACACATGGCTATTTTCTAT+TGG + chr7_3:73404389-73404408 Msa1122860:intron 35.0%
! AATTGCCCATGAGTTTTCAA+AGG + chr7_3:73404420-73404439 Msa1122860:intron 35.0%
TGTTTCCAGGAAAAGGAAAA+GGG - chr7_3:73404487-73404506 None:intergenic 35.0%
TTGTTTCCAGGAAAAGGAAA+AGG - chr7_3:73404488-73404507 None:intergenic 35.0%
!! CCAATTTTGTTTCCAGGAAA+AGG - chr7_3:73404494-73404513 None:intergenic 35.0%
! CCTTTTCCTGGAAACAAAAT+TGG + chr7_3:73404491-73404510 Msa1122860:intron 35.0%
CTAAGGCTAAAATACGACAA+GGG - chr7_3:73404799-73404818 None:intergenic 35.0%
GGTTGTATTGTAAGGTTCAT+TGG + chr7_3:73404835-73404854 Msa1122860:intron 35.0%
AGAGTTAAATAGTCCCACAT+CGG + chr7_3:73404875-73404894 Msa1122860:intron 35.0%
! GACCATATTTTATCCGATGT+GGG - chr7_3:73404891-73404910 None:intergenic 35.0%
! AGACCATATTTTATCCGATG+TGG - chr7_3:73404892-73404911 None:intergenic 35.0%
ACATGTGTTTATAAGTGGAG+TGG + chr7_3:73404914-73404933 Msa1122860:intron 35.0%
CATGTGTTTATAAGTGGAGT+GGG + chr7_3:73404915-73404934 Msa1122860:intron 35.0%
ATGTGTTTATAAGTGGAGTG+GGG + chr7_3:73404916-73404935 Msa1122860:intron 35.0%
CTAACAAGAAGCAAACCAAA+CGG + chr7_3:73404995-73405014 Msa1122860:intron 35.0%
!! TTTCTGGTATCTGCTTTTCA+TGG - chr7_3:73405446-73405465 None:intergenic 35.0%
TGAAAAGCAGATACCAGAAA+AGG + chr7_3:73405446-73405465 Msa1122860:intron 35.0%
! AGATACCAGAAAAGGTGTAA+GGG + chr7_3:73405454-73405473 Msa1122860:intron 35.0%
! TCCGTAGTGTTTGTAGATTT+TGG + chr7_3:73405650-73405669 Msa1122860:three_prime_UTR 35.0%
GCCAAAATCTACAAACACTA+CGG - chr7_3:73405654-73405673 None:intergenic 35.0%
!!! CAATGCGGTATATTTTGGTT+TGG - chr7_3:73405744-73405763 None:intergenic 35.0%
! TGGTTCAATGCGGTATATTT+TGG - chr7_3:73405749-73405768 None:intergenic 35.0%
ACTTCTTGTTCTAATCAAGG+TGG + chr7_3:73405793-73405812 Msa1122860:three_prime_UTR 35.0%
CTTCTTGTTCTAATCAAGGT+GGG + chr7_3:73405794-73405813 Msa1122860:three_prime_UTR 35.0%
GAGTTGACTGTTTCCAATAT+TGG + chr7_3:73406099-73406118 Msa1122860:three_prime_UTR 35.0%
!!! GCACAATGGTACATGTTTTT+TGG - chr7_3:73406276-73406295 None:intergenic 35.0%
TGTACCATTGTGCTGAAAAT+AGG + chr7_3:73406283-73406302 Msa1122860:three_prime_UTR 35.0%
TTGATCAAGAATGGGGTAAA+TGG + chr7_3:73399188-73399207 Msa1122860:intron 35.0%
AGAAGTAAAAGATTTGGGTG+AGG + chr7_3:73406476-73406495 Msa1122860:three_prime_UTR 35.0%
! CTAAACCTGCTGACAAATTT+TGG + chr7_3:73406628-73406647 Msa1122860:three_prime_UTR 35.0%
! TTTTCTCTATCCTTGCATGA+GGG - chr7_3:73406788-73406807 None:intergenic 35.0%
CAAATCTTCAATGAAGTTGG+TGG - chr7_3:73406811-73406830 None:intergenic 35.0%
TCAATTCTACAACTCTGCAA+CGG - chr7_3:73406858-73406877 None:intergenic 35.0%
TCACTACTACCAATTGCAAT+TGG - chr7_3:73406923-73406942 None:intergenic 35.0%
! ATTGGTAGTAGTGAATTCCT+TGG + chr7_3:73406929-73406948 Msa1122860:three_prime_UTR 35.0%
! GGGTGATGTTTCGTTTGTTT+TGG + chr7_3:73399228-73399247 Msa1122860:CDS 40.0%
CAAGATTACTACGGATGTGA+AGG + chr7_3:73399280-73399299 Msa1122860:CDS 40.0%
! CAGGACTTCTTGTTTCAACT+TGG + chr7_3:73399330-73399349 Msa1122860:CDS 40.0%
CAAGGCCAAAAAATGTTAGC+TGG - chr7_3:73399373-73399392 None:intergenic 40.0%
CAAATTAACTCGTGACAGGA+TGG - chr7_3:73399408-73399427 None:intergenic 40.0%
! TTGATGATAAGTCGCAACAG+AGG + chr7_3:73399574-73399593 Msa1122860:intron 40.0%
GAAGTCATTGCTACCAATTG+CGG - chr7_3:73399622-73399641 None:intergenic 40.0%
TGATTCACACAACACAAGTG+TGG - chr7_3:73399912-73399931 None:intergenic 40.0%
! AGTAGGAGTTACTTGACTTG+GGG - chr7_3:73400095-73400114 None:intergenic 40.0%
CAAGTAGGAGTTACTTGACT+TGG - chr7_3:73400097-73400116 None:intergenic 40.0%
! CAATCACAACTGGTTCAAGT+AGG - chr7_3:73400112-73400131 None:intergenic 40.0%
CTTGAACCAGTTGTGATTGA+TGG + chr7_3:73400113-73400132 Msa1122860:intron 40.0%
GGTTGAATTGGATGAAGAAG+AGG + chr7_3:73400242-73400261 Msa1122860:intron 40.0%
TGGTACATTTAACACTGCTG+AGG - chr7_3:73400379-73400398 None:intergenic 40.0%
AGTATAGAGGAGTGAGGATA+AGG - chr7_3:73400464-73400483 None:intergenic 40.0%
ACACAGACTATGAGATCAGA+AGG + chr7_3:73400787-73400806 Msa1122860:intron 40.0%
!! TTTAAACAAGTGGCACTGGT+AGG - chr7_3:73400899-73400918 None:intergenic 40.0%
TCAGTTTAAACAAGTGGCAC+TGG - chr7_3:73400903-73400922 None:intergenic 40.0%
!! GTGCCACTTGTTTAAACTGA+TGG + chr7_3:73400903-73400922 Msa1122860:intron 40.0%
GGACCATCAGTTTAAACAAG+TGG - chr7_3:73400909-73400928 None:intergenic 40.0%
ATCCATCTTGTCTTACGTCA+TGG + chr7_3:73401072-73401091 Msa1122860:intron 40.0%
AACCATGACGTAAGACAAGA+TGG - chr7_3:73401077-73401096 None:intergenic 40.0%
GAACATAAGTATTCGGCACA+AGG - chr7_3:73401268-73401287 None:intergenic 40.0%
!!! TTTTTTGGAGGGAAATTCGG+TGG + chr7_3:73401698-73401717 Msa1122860:intron 40.0%
GAAGAATCATAGGATGAGAC+TGG - chr7_3:73401985-73402004 None:intergenic 40.0%
AAGACATAAGGCCAACAAGT+AGG + chr7_3:73403120-73403139 Msa1122860:intron 40.0%
ATATCGGGATGTTACAAGTG+TGG + chr7_3:73403339-73403358 Msa1122860:intron 40.0%
CTTTCTCATCTTGATTGTGC+GGG + chr7_3:73403478-73403497 Msa1122860:intron 40.0%
TTTCTCATCTTGATTGTGCG+GGG + chr7_3:73403479-73403498 Msa1122860:intron 40.0%
! CAACAAATGCATTGGTCAAG+TGG + chr7_3:73404044-73404063 Msa1122860:intron 40.0%
!! ATGCATTGGTCAAGTGGTTT+TGG + chr7_3:73404050-73404069 Msa1122860:intron 40.0%
ATTAATAATCGGTGAGGCCT+AGG - chr7_3:73404449-73404468 None:intergenic 40.0%
!! TCGACTCCAATTTTGTTTCC+AGG - chr7_3:73404500-73404519 None:intergenic 40.0%
GCTAAGGCTAAAATACGACA+AGG - chr7_3:73404800-73404819 None:intergenic 40.0%
! CTTAGCCTCTTATCTAGAGT+CGG + chr7_3:73404814-73404833 Msa1122860:intron 40.0%
! TACAACCGACTCTAGATAAG+AGG - chr7_3:73404822-73404841 None:intergenic 40.0%
CTAGAGTCGGTTGTATTGTA+AGG + chr7_3:73404827-73404846 Msa1122860:intron 40.0%
GTCCCACATCGGATAAAATA+TGG + chr7_3:73404886-73404905 Msa1122860:intron 40.0%
TTTCTTTGTATCCCCCCTAA+TGG + chr7_3:73405103-73405122 Msa1122860:intron 40.0%
! CAGATACCAGAAAAGGTGTA+AGG + chr7_3:73405453-73405472 Msa1122860:intron 40.0%
! TTAGTCCCTTACACCTTTTC+TGG - chr7_3:73405462-73405481 None:intergenic 40.0%
! AAAAGGTGTAAGGGACTAAG+TGG + chr7_3:73405463-73405482 Msa1122860:exon 40.0%
CAAGGGACAACTTTATGTTG+TGG + chr7_3:73406191-73406210 Msa1122860:three_prime_UTR 40.0%
CAATGCTCTTTCCTTGAAGT+TGG + chr7_3:73406239-73406258 Msa1122860:three_prime_UTR 40.0%
CAATTAGTAGAGTATGACGG+AGG + chr7_3:73406339-73406358 Msa1122860:three_prime_UTR 40.0%
CAAAAGGGGTTACTTCTTGA+AGG + chr7_3:73406404-73406423 Msa1122860:three_prime_UTR 40.0%
!!! CTTCTTGAAGGCTGTTTTTG+TGG + chr7_3:73406416-73406435 Msa1122860:three_prime_UTR 40.0%
!! TTGTTGGCTCGAGATTACTA+TGG + chr7_3:73406534-73406553 Msa1122860:three_prime_UTR 40.0%
!! TGTTGGCTCGAGATTACTAT+GGG + chr7_3:73406535-73406554 Msa1122860:three_prime_UTR 40.0%
CCAATCCAAAATTTGTCAGC+AGG - chr7_3:73406636-73406655 None:intergenic 40.0%
! CCTGCTGACAAATTTTGGAT+TGG + chr7_3:73406633-73406652 Msa1122860:three_prime_UTR 40.0%
ATCACTGGATGGAACAAAGT+TGG - chr7_3:73406660-73406679 None:intergenic 40.0%
! GTTTTCTCTATCCTTGCATG+AGG - chr7_3:73406789-73406808 None:intergenic 40.0%
ACATCTCTGCCAATTGCAAT+TGG + chr7_3:73406911-73406930 Msa1122860:three_prime_UTR 40.0%
GGATGGAACAAAGTTGGACA+AGG - chr7_3:73399391-73399410 None:intergenic 45.0%
GTGACAGGATGGAACAAAGT+TGG - chr7_3:73399397-73399416 None:intergenic 45.0%
GAAACGCACACCCTCATATA+AGG + chr7_3:73399529-73399548 Msa1122860:intron 45.0%
GCACACCCTCATATAAGGTA+TGG + chr7_3:73399534-73399553 Msa1122860:intron 45.0%
TCATTGCTACCAATTGCGGT+TGG - chr7_3:73399618-73399637 None:intergenic 45.0%
TTCACACAACACAAGTGTGG+TGG - chr7_3:73399909-73399928 None:intergenic 45.0%
GATGAAGAAGAGGGCTTAGA+AGG + chr7_3:73400252-73400271 Msa1122860:intron 45.0%
GGATTACAAGCCACATTGCT+TGG + chr7_3:73400273-73400292 Msa1122860:intron 45.0%
CTGCTCAATGCTATAAGCCA+AGG + chr7_3:73400698-73400717 Msa1122860:intron 45.0%
TTGTGCTTGGATCAGTCACA+TGG + chr7_3:73401626-73401645 Msa1122860:intron 45.0%
! TCTAGTTTGTGTGAGCACCT+TGG + chr7_3:73404081-73404100 Msa1122860:intron 45.0%
! GGCTGCCTTTGAAAACTCAT+GGG - chr7_3:73404428-73404447 None:intergenic 45.0%
! AGGCTGCCTTTGAAAACTCA+TGG - chr7_3:73404429-73404448 None:intergenic 45.0%
! TGAGTTTTCAAAGGCAGCCT+AGG + chr7_3:73404429-73404448 Msa1122860:intron 45.0%
! TTCTGCCCTTTTCCTTTTCC+TGG + chr7_3:73404479-73404498 Msa1122860:intron 45.0%
GAGTCGAAGTCCTTCTTCAT+CGG + chr7_3:73404513-73404532 Msa1122860:intron 45.0%
AGTCCTTCTTCATCGGTCAA+CGG + chr7_3:73404520-73404539 Msa1122860:intron 45.0%
ATCGCTTCTTACTTGCTCTG+TGG + chr7_3:73404650-73404669 Msa1122860:intron 45.0%
CGACTCTAGATAAGAGGCTA+AGG - chr7_3:73404816-73404835 None:intergenic 45.0%
!!! ACCTCACAAGGTGGTTTTGT+GGG + chr7_3:73404947-73404966 Msa1122860:intron 45.0%
AGAGTGTGCTATGAATGCGA+TGG + chr7_3:73405528-73405547 Msa1122860:three_prime_UTR 45.0%
TGGAATGCAAAGGTTGTGAG+AGG - chr7_3:73405701-73405720 None:intergenic 45.0%
!! CATGTGGTGATGGTTCAATG+CGG - chr7_3:73405759-73405778 None:intergenic 45.0%
GTTGAAGGGTTGTGATCATG+TGG - chr7_3:73405775-73405794 None:intergenic 45.0%
! TTTCGGTATTTTCCTCGGCT+CGG - chr7_3:73405891-73405910 None:intergenic 45.0%
TTCTATTCAGGGTCGTTGCA+TGG + chr7_3:73406053-73406072 Msa1122860:three_prime_UTR 45.0%
! GTATGACGGAGGTCTATATG+TGG + chr7_3:73406350-73406369 Msa1122860:three_prime_UTR 45.0%
! GGGTGAGGTTTCGTTTGTTT+TGG + chr7_3:73406491-73406510 Msa1122860:three_prime_UTR 45.0%
TCTACAACTCTGCAACGGAT+AGG - chr7_3:73406853-73406872 None:intergenic 45.0%
!!! GTTTTTATTTTTTATTTTTT+TGG - chr7_3:73399970-73399989 None:intergenic 5.0%
!!! CAATTATTTTTTTATTTAAA+TGG + chr7_3:73402642-73402661 Msa1122860:intron 5.0%
!! ATATAAAGTATATAAAATAT+CGG + chr7_3:73403323-73403342 Msa1122860:intron 5.0%
!!! AAATTAAAAGTATAATAAAA+CGG - chr7_3:73405369-73405388 None:intergenic 5.0%
!!! CGCGCTGCTTTTGATATGAG+AGG - chr7_3:73400336-73400355 None:intergenic 50.0%
ATTCGAGATTCGGCTAGGCA+TGG - chr7_3:73400417-73400436 None:intergenic 50.0%
CCTAGCCGAATCTCGAATCT+CGG + chr7_3:73400419-73400438 Msa1122860:intron 50.0%
TGCAGCCGAGATTCGAGATT+CGG - chr7_3:73400427-73400446 None:intergenic 50.0%
! TCGGCTGCAAATTTTCCCCA+TGG + chr7_3:73400438-73400457 Msa1122860:intron 50.0%
AGGAGTGAGGATAAGGCCAT+GGG - chr7_3:73400457-73400476 None:intergenic 50.0%
AGTCATGCTTATCCGTGTGC+AGG - chr7_3:73402887-73402906 None:intergenic 50.0%
! CACCTTGGTTCGATTCCCTA+GGG + chr7_3:73404096-73404115 Msa1122860:intron 50.0%
GTGAACGACGTTCCTTCTTC+AGG + chr7_3:73404557-73404576 Msa1122860:intron 50.0%
CAAAACCACCTTGTGAGGTG+AGG - chr7_3:73404946-73404965 None:intergenic 50.0%
!! CACCTCACAAGGTGGTTTTG+TGG + chr7_3:73404946-73404965 Msa1122860:intron 50.0%
!!! CCTCACAAGGTGGTTTTGTG+GGG + chr7_3:73404948-73404967 Msa1122860:intron 50.0%
TAAGCGCCTGATGCTTGCTT+TGG + chr7_3:73405019-73405038 Msa1122860:intron 50.0%
ATGCTTGCTTTGGCCAAGCA+TGG + chr7_3:73405029-73405048 Msa1122860:intron 50.0%
ACAACGTCAGAGCCATTAGG+GGG - chr7_3:73405118-73405137 None:intergenic 50.0%
CACAACGTCAGAGCCATTAG+GGG - chr7_3:73405119-73405138 None:intergenic 50.0%
CCACAACGTCAGAGCCATTA+GGG - chr7_3:73405120-73405139 None:intergenic 50.0%
TCCACAACGTCAGAGCCATT+AGG - chr7_3:73405121-73405140 None:intergenic 50.0%
ATGCAAAGGTTGTGAGAGGC+AGG - chr7_3:73405697-73405716 None:intergenic 50.0%
GGGTTGTGATCATGTGGTGA+TGG - chr7_3:73405769-73405788 None:intergenic 50.0%
TAATACGAGAATCCGAGCCG+AGG + chr7_3:73405876-73405895 Msa1122860:three_prime_UTR 50.0%
TGCTACCAATTGCGGTTGGC+TGG - chr7_3:73399614-73399633 None:intergenic 55.0%
CATGGTGCTCGAGTTTGGCT+TGG - chr7_3:73400399-73400418 None:intergenic 55.0%
CTAGGCATGGTGCTCGAGTT+TGG - chr7_3:73400404-73400423 None:intergenic 55.0%
CCGAGATTCGAGATTCGGCT+AGG - chr7_3:73400422-73400441 None:intergenic 55.0%
GGAGTGAGGATAAGGCCATG+GGG - chr7_3:73400456-73400475 None:intergenic 55.0%
GAGGAGTGAGGATAAGGCCA+TGG - chr7_3:73400458-73400477 None:intergenic 55.0%
TTGTGCGGGGTGAATCGCTT+TGG + chr7_3:73403492-73403511 Msa1122860:intron 55.0%
! GCACCTTGGTTCGATTCCCT+AGG + chr7_3:73404095-73404114 Msa1122860:intron 55.0%
CACCCTAGGGAATCGAACCA+AGG - chr7_3:73404101-73404120 None:intergenic 55.0%
CCACCGTTGACCGATGAAGA+AGG - chr7_3:73404526-73404545 None:intergenic 55.0%
CCTTCTTCATCGGTCAACGG+TGG + chr7_3:73404523-73404542 Msa1122860:intron 55.0%
TCGGTCAACGGTGGTTCGTA+CGG + chr7_3:73404532-73404551 Msa1122860:intron 55.0%
GCAATCCTCACCTCACAAGG+TGG + chr7_3:73404938-73404957 Msa1122860:intron 55.0%
CCCCACAAAACCACCTTGTG+AGG - chr7_3:73404951-73404970 None:intergenic 55.0%
GCTTGGCCAAAGCAAGCATC+AGG - chr7_3:73405028-73405047 None:intergenic 55.0%
CAACGTCAGAGCCATTAGGG+GGG - chr7_3:73405117-73405136 None:intergenic 55.0%
!! CCCTAATGGCTCTGACGTTG+TGG + chr7_3:73405117-73405136 Msa1122860:intron 55.0%
CAAAGGTTGTGAGAGGCAGG+TGG - chr7_3:73405694-73405713 None:intergenic 55.0%
! TTGCGGTTGGCTGGCACTGA+TGG - chr7_3:73399605-73399624 None:intergenic 60.0%
CAGTGCCAGCCAACCGCAAT+TGG + chr7_3:73399606-73399625 Msa1122860:intron 60.0%
GTCAACGGTGGTTCGTACGG+CGG + chr7_3:73404535-73404554 Msa1122860:intron 60.0%
GGGGCAATCCTCACCTCACA+AGG + chr7_3:73404935-73404954 Msa1122860:intron 60.0%
GCATCAGGCGCTTAGCCGTT+TGG - chr7_3:73405013-73405032 None:intergenic 60.0%
TTGTGAGAGGCAGGTGGAGG+AGG - chr7_3:73405688-73405707 None:intergenic 60.0%
AGGTTGTGAGAGGCAGGTGG+AGG - chr7_3:73405691-73405710 None:intergenic 60.0%
! GGAAGGCGCACCCTCATGCA+AGG + chr7_3:73406775-73406794 Msa1122860:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 73398959 73407141 73398959 ID=Msa1122860;Name=Msa1122860
chr7_3 mRNA 73398959 73407141 73398959 ID=Msa1122860-mRNA-1;Parent=Msa1122860;Name=Msa1122860-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.25|0.4|1|0|0|5|1582|157
chr7_3 exon 73398959 73399202 73398959 ID=Msa1122860-mRNA-1:exon:19229;Parent=Msa1122860-mRNA-1
chr7_3 exon 73399215 73399418 73399215 ID=Msa1122860-mRNA-1:exon:19230;Parent=Msa1122860-mRNA-1
chr7_3 exon 73405419 73405426 73405419 ID=Msa1122860-mRNA-1:exon:19231;Parent=Msa1122860-mRNA-1
chr7_3 exon 73405456 73406689 73405456 ID=Msa1122860-mRNA-1:exon:19232;Parent=Msa1122860-mRNA-1
chr7_3 exon 73406776 73407141 73406776 ID=Msa1122860-mRNA-1:exon:19233;Parent=Msa1122860-mRNA-1
chr7_3 CDS 73398959 73399202 73398959 ID=Msa1122860-mRNA-1:cds;Parent=Msa1122860-mRNA-1
chr7_3 CDS 73399215 73399418 73399215 ID=Msa1122860-mRNA-1:cds;Parent=Msa1122860-mRNA-1
chr7_3 CDS 73405419 73405426 73405419 ID=Msa1122860-mRNA-1:cds;Parent=Msa1122860-mRNA-1
chr7_3 CDS 73405456 73405473 73405456 ID=Msa1122860-mRNA-1:cds;Parent=Msa1122860-mRNA-1
chr7_3 three_prime_UTR 73405474 73406689 73405474 ID=Msa1122860-mRNA-1:three_prime_utr;Parent=Msa1122860-mRNA-1
chr7_3 three_prime_UTR 73406776 73407141 73406776 ID=Msa1122860-mRNA-1:three_prime_utr;Parent=Msa1122860-mRNA-1
Gene Sequence

>Msa1122860

ATGGGAACAATTTTCTGGATCAATGCTTTGTCTTTGAAGTTGGTTCAATTTTCACCAAAAAACTTATGTTGTGGTAAAAAGAGTAATATCTGGAAGGTTTCTAGTACATACACTAAACAATTAGTAGAGTCTGATGGAAATCTCTATGTAGTTGATTTGTATATTGACGGTGAAAGGTTTTACAAATTGGGTCACATATTGAAGGCTATTTGTGTGGAAGTTTATAAGCTTGATCAAGAATGGGATGTAAAAGATTTGGGTGATGTTTCGTTTGTTTTGGGTAAAGACTCAAACATTGCATTGTTGGCTCAAGATTACTACGGATGTGAAGGAAATTGCATCTACTTCTATTGTGAAGACAGGACTTCTTGTTTCAACTTGGAGAATTTAGAGGCTAAGCCAGCTAACATTTTTTGGCCTTGTCCAACTTTGTTCCATCCTGTCACGAAGAGGTTCATACCAGAAAAGGTGTAA

Protein sequence

>Msa1122860

MGTIFWINALSLKLVQFSPKNLCCGKKSNIWKVSSTYTKQLVESDGNLYVVDLYIDGERFYKLGHILKAICVEVYKLDQEWDVKDLGDVSFVLGKDSNIALLAQDYYGCEGNCIYFYCEDRTSCFNLENLEAKPANIFWPCPTLFHPVTKRFIPEKV*