AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163770 MtrunA17_Chr7g0261081 96.536 866 29 1 1 865 1 866 0.0 1753
Msa1163770 MtrunA17_Chr1g0184191 77.560 869 188 6 1 865 1 866 0.0 1395
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163770 AT2G31260.1 65.533 882 265 15 1 862 2 864 0.0 1121

Find 248 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTTTGAAAGACTTTA+TGG 0.100521 7_4:+55137393 Msa1163770:CDS
GAATTTATAGTGGGAGTTTC+TGG 0.112453 7_4:-55141823 None:intergenic
GTCCCTCTCTAATTGTTATT+TGG 0.145427 7_4:+55141953 Msa1163770:three_prime_UTR
AACTGCTTCCCCTGAGTATT+TGG 0.152672 7_4:-55141061 None:intergenic
AACAACTTTGTCAACAATTT+TGG 0.153920 7_4:-55137904 None:intergenic
GAAGGGTGCTTTCAATTAAA+TGG 0.190594 7_4:+55141904 Msa1163770:three_prime_UTR
GGAGAATTTAATCTACATTT+TGG 0.223978 7_4:+55141781 Msa1163770:CDS
AAAATATCATTGCAGATATT+TGG 0.224381 7_4:+55139876 Msa1163770:intron
CCCTTGAATGGACTTTAAAT+TGG 0.245163 7_4:+55138135 Msa1163770:CDS
TGTAGAACCAATTGCTGATT+TGG 0.253494 7_4:+55137368 Msa1163770:CDS
CCCATTTCACAATGGTTTCC+AGG 0.256603 7_4:+55138050 Msa1163770:CDS
GTAAGTGTGAGTGGGGTTAA+AGG 0.263267 7_4:-55137618 None:intergenic
GTCTTCATCCCCTGCCGTAT+TGG 0.264537 7_4:-55141176 None:intergenic
CGGAAGGAGAACTACTTAAT+TGG 0.265768 7_4:+55137999 Msa1163770:CDS
GTTATTCCATATGGTTCTAA+TGG 0.268064 7_4:-55141358 None:intergenic
CTGCTACGAGAGGCATTATA+TGG 0.271120 7_4:-55140637 None:intergenic
TTCTAGCCCACCAATGGCTT+CGG 0.278161 7_4:-55141567 None:intergenic
CAGGACTAGATTGAACTTTC+GGG 0.278462 7_4:-55138079 None:intergenic
TCTGAAGGGCTCTCACTTCC+TGG 0.293553 7_4:-55137321 None:intergenic
TCTTCATCCCCTGCCGTATT+GGG 0.293680 7_4:-55141175 None:intergenic
TCCAGTAAAAGTGTTGTTCT+TGG 0.302842 7_4:-55141705 None:intergenic
CCTCATCAGCTCCCATCCTT+AGG 0.305842 7_4:+55141497 Msa1163770:CDS
TGCAATTGCAGATGAGCTTC+TGG 0.319750 7_4:+55139956 Msa1163770:CDS
GGGCTCTCACTTCCTGGACT+TGG 0.325164 7_4:-55137315 None:intergenic
TCAGGACTAGATTGAACTTT+CGG 0.327003 7_4:-55138080 None:intergenic
GAAGATAGGGGTGATTATTC+TGG 0.327635 7_4:-55141285 None:intergenic
AGCTATTATTGTTGGATACT+TGG 0.328327 7_4:+55137644 Msa1163770:CDS
AGCTCGCCCCTTTGGGACTT+TGG 0.342784 7_4:+55136776 Msa1163770:five_prime_UTR
GGACTACCCCTCCACATTCT+AGG 0.344102 7_4:-55141154 None:intergenic
ACAATAAACAGAAGTAAATA+TGG 0.345471 7_4:-55140273 None:intergenic
AAGGTGTTGGGCATGTTTGC+AGG 0.345877 7_4:+55140432 Msa1163770:CDS
GAACCTTGTTATAACCGTTT+TGG 0.346406 7_4:+55137109 Msa1163770:intron
TTTGAGTATTCTTCATAGTT+GGG 0.347898 7_4:-55141433 None:intergenic
ATTTGAGTATTCTTCATAGT+TGG 0.350704 7_4:-55141434 None:intergenic
TAACGTTCTGTTATTCCATA+TGG 0.351902 7_4:-55141367 None:intergenic
TACTATATGTTGATTGGAAT+GGG 0.357764 7_4:+55137511 Msa1163770:CDS
GATTGTTGAACTTCTAAGTC+TGG 0.359203 7_4:+55137458 Msa1163770:CDS
CTTACCAAAGCTATTATTGT+TGG 0.359747 7_4:+55137636 Msa1163770:CDS
TATTTGGTCGGAACTTGTTT+TGG 0.363325 7_4:+55139892 Msa1163770:CDS
TTAGGTTCAGCTCGCCCCTT+TGG 0.364104 7_4:+55136768 Msa1163770:intron
CCTGGAAACCATTGTGAAAT+GGG 0.364513 7_4:-55138050 None:intergenic
CAGAAAAGGCTTATGGTAGT+TGG 0.367074 7_4:+55138677 Msa1163770:CDS
TCTAGCCCACCAATGGCTTC+GGG 0.369897 7_4:-55141566 None:intergenic
TGAATTTGAAACCTTATTCC+AGG 0.371525 7_4:+55140076 Msa1163770:CDS
GTTGTTTGGTCATTGAAATC+TGG 0.373910 7_4:-55141634 None:intergenic
ATCACCCCTATCTTCTTGAT+TGG 0.376879 7_4:+55141293 Msa1163770:CDS
TCTTTGCCACGCCATCTCTT+TGG 0.378039 7_4:-55140032 None:intergenic
CAGGCAGAATACCTGGAATA+AGG 0.378454 7_4:-55140087 None:intergenic
TTTGCTGTATATAGATTCAT+TGG 0.378561 7_4:+55141987 Msa1163770:three_prime_UTR
GGAATTAAGCCCTGTGATCT+TGG 0.378592 7_4:+55137573 Msa1163770:CDS
GACATTACAGAAAAGGCTTA+TGG 0.380010 7_4:+55138670 Msa1163770:CDS
AACAATGACAGATGACTTAG+AGG 0.383575 7_4:+55141756 Msa1163770:CDS
TCACAATGGTTTCCAGGTGC+TGG 0.383647 7_4:+55138056 Msa1163770:CDS
TTCAACATTTACAGTGAAAT+CGG 0.386132 7_4:-55140411 None:intergenic
GCTATTATTGTTGGATACTT+GGG 0.389328 7_4:+55137645 Msa1163770:CDS
TTTAGCAGACCAAGTGGTTC+CGG 0.389483 7_4:+55137186 Msa1163770:CDS
TAAAGTCCATTCAAGGGTCT+TGG 0.389766 7_4:-55138129 None:intergenic
GAGCATGGAAACTCTCATTA+TGG 0.390073 7_4:+55140610 Msa1163770:CDS
ACCTGGAAACCATTGTGAAA+TGG 0.391785 7_4:-55138051 None:intergenic
CATGATAATTATATGTTGTT+TGG 0.395237 7_4:-55141648 None:intergenic
TACTCAAAAGCTAGCAGTGC+TGG 0.395445 7_4:-55141845 None:intergenic
GTAGTACCAATCAAGAAGAT+AGG 0.404579 7_4:-55141299 None:intergenic
GATCGGGCTGCATCTCAACT+TGG 0.409523 7_4:+55141469 Msa1163770:CDS
CTTCGAGATGATGCTGTGCT+TGG 0.409901 7_4:-55138788 None:intergenic
AGAAAAGGCTTATGGTAGTT+GGG 0.415599 7_4:+55138678 Msa1163770:CDS
TGAGTATTTGGTTCCCATGA+TGG 0.416490 7_4:-55141049 None:intergenic
GGCTCTCACTTCCTGGACTT+GGG 0.417635 7_4:-55137314 None:intergenic
GGGATGGATGCTGTTGAATC+TGG 0.418976 7_4:+55137552 Msa1163770:CDS
TTCAGAGTAGTTATCCATCA+TGG 0.419889 7_4:+55141035 Msa1163770:CDS
ATCGGGCTGCATCTCAACTT+GGG 0.423241 7_4:+55141470 Msa1163770:CDS
GAAACAAAACATCCAATAGA+AGG 0.424244 7_4:-55137676 None:intergenic
TTACTATATGTTGATTGGAA+TGG 0.426389 7_4:+55137510 Msa1163770:CDS
GGGGTCCTTACATCTGAAAA+TGG 0.427595 7_4:-55142078 None:intergenic
AGCTTCTTTGCCAAGATCAC+AGG 0.430987 7_4:-55137583 None:intergenic
TCCCGAGGGAACAATATCTA+TGG 0.431420 7_4:+55139986 Msa1163770:CDS
TTGGTCTTTGGGGAATGGAT+TGG 0.441248 7_4:+55137128 Msa1163770:five_prime_UTR
ACCAATTTAAAGTCCATTCA+AGG 0.443781 7_4:-55138136 None:intergenic
CAGGGGATGAAGACAGAAAC+AGG 0.448292 7_4:+55141185 Msa1163770:CDS
ATTGTTGAACTTCTAAGTCT+GGG 0.448533 7_4:+55137459 Msa1163770:CDS
AAGGAGTTCACAGGGAAAGA+TGG 0.449011 7_4:+55140660 Msa1163770:CDS
TATGGTTACTACTGTGAGAA+AGG 0.450099 7_4:+55137411 Msa1163770:CDS
CACCATAGATATTGTTCCCT+CGG 0.451923 7_4:-55139988 None:intergenic
TAAGTGTGAGTGGGGTTAAA+GGG 0.453021 7_4:-55137617 None:intergenic
GTATCCAACAATAATAGCTT+TGG 0.455646 7_4:-55137640 None:intergenic
AGCCCTTCAGATTTCCTCAA+TGG 0.457772 7_4:+55137333 Msa1163770:CDS
AAGAGATCCAAATCAGCAAT+TGG 0.458966 7_4:-55137375 None:intergenic
CCTTAGGGAGAGCTTTAGTC+AGG 0.459193 7_4:+55141513 Msa1163770:CDS
GCGATTCTTTGCTCAACTAA+AGG 0.459966 7_4:+55137701 Msa1163770:CDS
TACTTACCAAGACCCTTGAA+TGG 0.460856 7_4:+55138123 Msa1163770:CDS
ACCAATGGCTTCGGGTTGCG+TGG 0.462694 7_4:-55141558 None:intergenic
TGAACTTTCGGGCCAGCACC+TGG 0.463130 7_4:-55138068 None:intergenic
ATCCAAAGACATTACAGAAA+AGG 0.464783 7_4:+55138663 Msa1163770:CDS
AGCAGTGCTGGAATTTATAG+TGG 0.465268 7_4:-55141833 None:intergenic
ACAGAAACAGGTTTATATCC+AGG 0.466653 7_4:+55141197 Msa1163770:CDS
TTTGCAATGATAGATATGAT+AGG 0.466727 7_4:-55139696 None:intergenic
CTCATCAGCTCCCATCCTTA+GGG 0.467690 7_4:+55141498 Msa1163770:CDS
TATAGGTCGACCATCTCTTC+AGG 0.471785 7_4:+55139616 Msa1163770:intron
TGCTACGAGAGGCATTATAT+GGG 0.472893 7_4:-55140636 None:intergenic
TTCGAGATGATGCTGTGCTT+GGG 0.476956 7_4:-55138787 None:intergenic
TTTATTATAAAGTTTGCGTT+CGG 0.478832 7_4:-55135848 None:intergenic
GAACTATAACTGCTATTAGC+CGG 0.481240 7_4:+55139931 Msa1163770:CDS
TCAGTCTCATGACTATATCA+TGG 0.482419 7_4:-55137974 None:intergenic
TAGTACCAATCAAGAAGATA+GGG 0.482945 7_4:-55141298 None:intergenic
ACTGTAAATGTTGAAGGTGT+TGG 0.484395 7_4:+55140419 Msa1163770:CDS
GAGATCGAATTGTCTAATTA+CGG 0.486113 7_4:+55137285 Msa1163770:CDS
TCTACGGAGTGGACAAGCTC+AGG 0.488656 7_4:+55141594 Msa1163770:CDS
GATGTTCCATTAGAACCATA+TGG 0.488783 7_4:+55141352 Msa1163770:CDS
ATGAAATTCAAACTATGCCC+TGG 0.493235 7_4:+55137880 Msa1163770:CDS
CTGTAAATGTTGAAGGTGTT+GGG 0.496375 7_4:+55140420 Msa1163770:CDS
AAACGATATTGTGCTCCATC+AGG 0.497164 7_4:-55138098 None:intergenic
CCAATGGCTTCGGGTTGCGT+GGG 0.500174 7_4:-55141557 None:intergenic
ATGATAGATATGATAGGTGT+AGG 0.502443 7_4:-55139690 None:intergenic
AGGACCCCAGCAAAATAGTC+TGG 0.502578 7_4:+55142093 Msa1163770:three_prime_UTR
AAATGAGTATCACGAGGATC+GGG 0.504809 7_4:+55141453 Msa1163770:CDS
TAATTAGACAATTCGATCTC+CGG 0.512269 7_4:-55137282 None:intergenic
ATTCCTTGTCATATTCATGC+TGG 0.512407 7_4:+55138724 Msa1163770:CDS
CATATACACTTTCTCCATTG+AGG 0.512728 7_4:-55137347 None:intergenic
GATTTCACTGTAAATGTTGA+AGG 0.515835 7_4:+55140413 Msa1163770:CDS
ATCATGGGAACCAAATACTC+AGG 0.518116 7_4:+55141051 Msa1163770:CDS
ACTACTGTGAGAAAGGGTTA+TGG 0.518635 7_4:+55137418 Msa1163770:CDS
TATGAACCTCAGCTTGATGT+TGG 0.519250 7_4:+55142028 Msa1163770:three_prime_UTR
AGGGGTAGTCCCAATACGGC+AGG 0.521250 7_4:+55141166 Msa1163770:CDS
CAAATGAGTATCACGAGGAT+CGG 0.521885 7_4:+55141452 Msa1163770:CDS
AATGATGTTACTTGAGGAGA+TGG 0.523349 7_4:+55140233 Msa1163770:CDS
TATGGTGTATTGTTACAAAG+TGG 0.525702 7_4:+55137436 Msa1163770:CDS
GGAAGGCATCGAATAGTCTC+TGG 0.526974 7_4:-55141392 None:intergenic
ACCATAGATATTGTTCCCTC+GGG 0.527633 7_4:-55139987 None:intergenic
GTCAACGCCAAAGTCCCAAA+GGG 0.527737 7_4:-55136783 None:intergenic
GCACAGCATCATCTCGAAGA+TGG 0.528098 7_4:+55138792 Msa1163770:CDS
ATGGTTACTACTGTGAGAAA+GGG 0.529048 7_4:+55137412 Msa1163770:CDS
TAGCTTTGGTAAGTGTGAGT+GGG 0.530753 7_4:-55137626 None:intergenic
GAAGATGGTCAAACTTGTCT+AGG 0.533585 7_4:+55138807 Msa1163770:CDS
AGCATGAATATGACAAGGAA+TGG 0.534278 7_4:-55138722 None:intergenic
TCATTCTGTGTCAAGTTGGA+AGG 0.535353 7_4:-55141409 None:intergenic
TGTTCACAGACACTAATAGT+AGG 0.535903 7_4:-55137160 None:intergenic
ACTTCTGTTTATTGTCCCAA+AGG 0.536240 7_4:+55140281 Msa1163770:CDS
CCTAAGGATGGGAGCTGATG+AGG 0.537502 7_4:-55141497 None:intergenic
TCAGAGTAGTTATCCATCAT+GGG 0.539771 7_4:+55141036 Msa1163770:CDS
CTATTATTGTTGGATACTTG+GGG 0.540123 7_4:+55137646 Msa1163770:CDS
TCCATGCTCTTGAAAATCAA+AGG 0.540684 7_4:-55140596 None:intergenic
AACTATAACTGCTATTAGCC+GGG 0.542388 7_4:+55139932 Msa1163770:CDS
ACTAAAGCTCTCCCTAAGGA+TGG 0.543023 7_4:-55141509 None:intergenic
ATAGGGGTGATTATTCTGGT+TGG 0.544484 7_4:-55141281 None:intergenic
AAAGTTCAATCTAGTCCTGA+TGG 0.544493 7_4:+55138083 Msa1163770:CDS
TAATCCGATGCCTGAAGAGA+TGG 0.549224 7_4:-55139626 None:intergenic
CTCGAGGAGTCTCTGCTAGA+GGG 0.550555 7_4:+55139774 Msa1163770:CDS
TTGTTCTCGTTCAAAATACT+CGG 0.551966 7_4:+55137922 Msa1163770:CDS
TCTCGAGGAGTCTCTGCTAG+AGG 0.552554 7_4:+55139773 Msa1163770:CDS
CTAAAAGCACCGGAACCACT+TGG 0.553267 7_4:-55137195 None:intergenic
GTTCGGAAGGAGATGAGCAT+AGG 0.553415 7_4:-55135831 None:intergenic
GCTTCTTTGCCAAGATCACA+GGG 0.553864 7_4:-55137582 None:intergenic
ACGCAACCCGAAGCCATTGG+TGG 0.555348 7_4:+55141560 Msa1163770:CDS
GTGGAGGGGTAGTCCCAATA+CGG 0.557059 7_4:+55141162 Msa1163770:CDS
GGGTAGTCCCAATACGGCAG+GGG 0.557263 7_4:+55141168 Msa1163770:CDS
TTATAAAGTTTGCGTTCGGA+AGG 0.557342 7_4:-55135844 None:intergenic
ATGACAGATGACTTAGAGGC+AGG 0.558731 7_4:+55141760 Msa1163770:CDS
TGCTGGCATATCTCTTTCTG+AGG 0.559787 7_4:+55138741 Msa1163770:CDS
TCGTAGCAGAAGGAGTTCAC+AGG 0.560103 7_4:+55140651 Msa1163770:CDS
TTAGTTGAGCAAAGAATCGC+AGG 0.562238 7_4:-55137698 None:intergenic
TCGACCATCTCTTCAGGCAT+CGG 0.562994 7_4:+55139622 Msa1163770:CDS
GGCGCGTCATCTTTGACTAG+AGG 0.563241 7_4:+55137240 Msa1163770:CDS
GGGCTCCGTAATGCAAAATG+TGG 0.563493 7_4:+55137531 Msa1163770:CDS
TTGTTGAACTTCTAAGTCTG+GGG 0.566155 7_4:+55137460 Msa1163770:CDS
AGTGCTGTATGGCATTTCCC+TGG 0.566226 7_4:-55141215 None:intergenic
TACGGAAGGATCCCAAGTCC+AGG 0.566589 7_4:+55137303 Msa1163770:CDS
CTTAATTGGAATGCTCAACA+AGG 0.567745 7_4:+55138013 Msa1163770:CDS
TATCATTGCAGATATTTGGT+CGG 0.568586 7_4:+55139880 Msa1163770:intron
CAGAAACAGGTTTATATCCA+GGG 0.569124 7_4:+55141198 Msa1163770:CDS
TTCCCCTCCTAGAATGTGGA+GGG 0.569698 7_4:+55141147 Msa1163770:CDS
TTTCCAAATAACAATTAGAG+AGG 0.570237 7_4:-55141956 None:intergenic
ACCGATCAAACATGCTATGT+AGG 0.571866 7_4:-55138163 None:intergenic
CAGAATTGCAGCAAAGCCAC+CGG 0.573817 7_4:-55139736 None:intergenic
TTTGAATATACTAAAAGCAC+CGG 0.574468 7_4:-55137205 None:intergenic
TTTACTTCATGATGATTCGC+CGG 0.574817 7_4:+55137263 Msa1163770:CDS
TCCTACATAGCATGTTTGAT+CGG 0.578136 7_4:+55138162 Msa1163770:CDS
CTCCATTGAGGAAATCTGAA+GGG 0.578699 7_4:-55137335 None:intergenic
TCTCCATTGAGGAAATCTGA+AGG 0.580109 7_4:-55137336 None:intergenic
AGCTTTGGTAAGTGTGAGTG+GGG 0.580159 7_4:-55137625 None:intergenic
TTGCTTTCCCCATTTCACAA+TGG 0.581632 7_4:+55138042 Msa1163770:CDS
GGGGTAGTCCCAATACGGCA+GGG 0.581900 7_4:+55141167 Msa1163770:CDS
CCATTCCCCAAAGACCAAAA+CGG 0.583103 7_4:-55137123 None:intergenic
CGCAACCCGAAGCCATTGGT+GGG 0.583279 7_4:+55141561 Msa1163770:CDS
CCAGTTGCAAAAGTGCTGTA+TGG 0.583969 7_4:-55141226 None:intergenic
AGATGATGAAACAGTAGCGA+AGG 0.584404 7_4:-55136008 None:intergenic
GTTTGGTCATTGAAATCTGG+AGG 0.584448 7_4:-55141631 None:intergenic
CACATTATATGCCAAAGAGA+TGG 0.585314 7_4:+55140021 Msa1163770:CDS
GAGCGGAAGTTATCAGTACA+TGG 0.585425 7_4:+55141109 Msa1163770:CDS
TTCCAAATAACAATTAGAGA+GGG 0.588455 7_4:-55141955 None:intergenic
GATGAAACAGTAGCGAAGGA+AGG 0.589559 7_4:-55136004 None:intergenic
TCCTTACATCTGAAAATGGA+AGG 0.591128 7_4:-55142074 None:intergenic
TCGGAAACTATGTGTGCTGA+AGG 0.593556 7_4:+55137941 Msa1163770:CDS
CTAAAGCTCTCCCTAAGGAT+GGG 0.595120 7_4:-55141508 None:intergenic
GGGTTCATTCTGTGTCAAGT+TGG 0.595429 7_4:-55141413 None:intergenic
CCTGACTAAAGCTCTCCCTA+AGG 0.596692 7_4:-55141513 None:intergenic
TGAAATTCAAACTATGCCCT+GGG 0.597379 7_4:+55137881 Msa1163770:CDS
TCGGGCTGCATCTCAACTTG+GGG 0.597814 7_4:+55141471 Msa1163770:CDS
CAGTCTCATGACTATATCAT+GGG 0.597885 7_4:-55137973 None:intergenic
GACGACTTCTAGCCCACCAA+TGG 0.598590 7_4:-55141573 None:intergenic
GGTGGGCTAGAAGTCGTCTA+CGG 0.600262 7_4:+55141578 Msa1163770:CDS
ATAGCTTTGGTAAGTGTGAG+TGG 0.602946 7_4:-55137627 None:intergenic
CCAATTTAAAGTCCATTCAA+GGG 0.603846 7_4:-55138135 None:intergenic
CCGTAATGCAAAATGTGGGA+TGG 0.604122 7_4:+55137536 Msa1163770:CDS
ACCCCTCCACATTCTAGGAG+GGG 0.604562 7_4:-55141149 None:intergenic
GCTCATCTGCAATTGCAGCC+CGG 0.605056 7_4:-55139950 None:intergenic
TGTCAACGCCAAAGTCCCAA+AGG 0.605903 7_4:-55136784 None:intergenic
TTTATAGTGGGAGTTTCTGG+AGG 0.606997 7_4:-55141820 None:intergenic
CTTCCCCTCCTAGAATGTGG+AGG 0.608862 7_4:+55141146 Msa1163770:CDS
TCATGGGAACCAAATACTCA+GGG 0.611108 7_4:+55141052 Msa1163770:CDS
TAAGTTCCAACATCAAGCTG+AGG 0.612971 7_4:-55142034 None:intergenic
CATCTTCCCCTCCTAGAATG+TGG 0.614729 7_4:+55141143 Msa1163770:CDS
TACCCCTCCACATTCTAGGA+GGG 0.614814 7_4:-55141150 None:intergenic
AGAGAGGGACAATCATGACT+TGG 0.617793 7_4:-55141940 None:intergenic
ACAGAAGTAAATATGGAGTG+AGG 0.618250 7_4:-55140266 None:intergenic
AGATGGAGAAATCATTGTTG+AGG 0.619203 7_4:+55140677 Msa1163770:CDS
TACAGCAATGATGTTACTTG+AGG 0.621146 7_4:+55140227 Msa1163770:CDS
TCTCTTGAAGCTGCATCATG+AGG 0.621641 7_4:-55141331 None:intergenic
GCAATCACTTGGATTCGTTG+TGG 0.621682 7_4:+55141248 Msa1163770:CDS
ATATTCAAATGGAAACAGAA+AGG 0.623281 7_4:+55137219 Msa1163770:CDS
CGTAGCAGAAGGAGTTCACA+GGG 0.625758 7_4:+55140652 Msa1163770:CDS
ATCTTAGAACATTCAGAGAG+CGG 0.626044 7_4:+55141092 Msa1163770:CDS
CGAGGGAACAATATCTATGG+TGG 0.626273 7_4:+55139989 Msa1163770:CDS
TCGAATTGTCTAATTACGGA+AGG 0.628393 7_4:+55137289 Msa1163770:CDS
TATATAGATTCATTGGTGTG+AGG 0.629591 7_4:+55141994 Msa1163770:three_prime_UTR
CTACCCCTCCACATTCTAGG+AGG 0.629863 7_4:-55141151 None:intergenic
ATAATGCCTCTCGTAGCAGA+AGG 0.629914 7_4:+55140641 Msa1163770:CDS
GCAGTGCTGGAATTTATAGT+GGG 0.639720 7_4:-55141832 None:intergenic
GCTTCTGGTCTTAGATCCCG+AGG 0.643614 7_4:+55139971 Msa1163770:CDS
AGTCATGAGACTGATGCGGA+AGG 0.646846 7_4:+55137983 Msa1163770:CDS
GATGGTCAAACTTGTCTAGG+TGG 0.647207 7_4:+55138810 Msa1163770:CDS
CTGGAAACCATTGTGAAATG+GGG 0.649696 7_4:-55138049 None:intergenic
TCCCCTCCTAGAATGTGGAG+GGG 0.656107 7_4:+55141148 Msa1163770:CDS
GCTAGAAGTCGTCTACGGAG+TGG 0.667710 7_4:+55141583 Msa1163770:CDS
AGACCAAAACGGTTATAACA+AGG 0.668823 7_4:-55137112 None:intergenic
TATATGCCAAAGAGATGGCG+TGG 0.670967 7_4:+55140026 Msa1163770:CDS
TTAATTGGAATGCTCAACAA+GGG 0.673370 7_4:+55138014 Msa1163770:CDS
ACAATGTTTAGCAGACCAAG+TGG 0.673800 7_4:+55137180 Msa1163770:exon
TGGCAAAGAAATTACTGACG+TGG 0.676549 7_4:+55140046 Msa1163770:CDS
ATATAGTCATGAGACTGATG+CGG 0.679190 7_4:+55137979 Msa1163770:CDS
GGCTCCGTAATGCAAAATGT+GGG 0.679327 7_4:+55137532 Msa1163770:CDS
AGTACCAATCAAGAAGATAG+GGG 0.679475 7_4:-55141297 None:intergenic
CTTCTGGTCTTAGATCCCGA+GGG 0.679702 7_4:+55139972 Msa1163770:CDS
TGAACTCCTTCTGCTACGAG+AGG 0.680258 7_4:-55140647 None:intergenic
GCTACGAGAGGCATTATATG+GGG 0.685648 7_4:-55140635 None:intergenic
ATGCCAGCATGAATATGACA+AGG 0.687544 7_4:-55138727 None:intergenic
TCAACGCCAAAGTCCCAAAG+GGG 0.699074 7_4:-55136782 None:intergenic
ATAAGGTTTCAAATTCAATG+CGG 0.726994 7_4:-55140070 None:intergenic
ATACTCAAATGAGTATCACG+AGG 0.745566 7_4:+55141447 Msa1163770:CDS
CATGGGAACCAAATACTCAG+GGG 0.758921 7_4:+55141053 Msa1163770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTGGAAAATTTA+TGG + chr7_4:55139171-55139190 Msa1163770:intron 10.0%
!!! TGATAATTTTTTTTTAGTAT+AGG + chr7_4:55139214-55139233 Msa1163770:intron 10.0%
!! TGTAAATAAATAACAAATAA+CGG - chr7_4:55140151-55140170 None:intergenic 10.0%
!! TAAAATTCAAAACATATATA+TGG - chr7_4:55140773-55140792 None:intergenic 10.0%
!!! TTTTTTATACTTTTGTGAAA+TGG + chr7_4:55136717-55136736 Msa1163770:intron 15.0%
!!! TTATTTTTCTGTTGTTTATT+TGG + chr7_4:55136983-55137002 Msa1163770:intron 15.0%
!!! TATTTTTCTGTTGTTTATTT+GGG + chr7_4:55136984-55137003 Msa1163770:intron 15.0%
!! GTAAGATTCTAATATTAATT+TGG + chr7_4:55137075-55137094 Msa1163770:intron 15.0%
!!! TTTTTTTACTATATGTTGAT+TGG + chr7_4:55137505-55137524 Msa1163770:CDS 15.0%
!! ACACATTATTAAATATTAAC+AGG - chr7_4:55138249-55138268 None:intergenic 15.0%
!!! CTATTCATGAAAATTTTTAT+TGG + chr7_4:55139160-55139179 Msa1163770:intron 15.0%
!! ATTTATGGAAATTACAATAA+AGG + chr7_4:55139186-55139205 Msa1163770:intron 15.0%
!! TATTTATTTACACATAGAAT+AGG + chr7_4:55140159-55140178 Msa1163770:intron 15.0%
!! CAAAATATTCATAATAGTAA+TGG - chr7_4:55140805-55140824 None:intergenic 15.0%
!!! TCCAAAAAAAATTATTTTAC+TGG - chr7_4:55140960-55140979 None:intergenic 15.0%
!! AATTAAACGAAAATACATAT+AGG - chr7_4:55140992-55141011 None:intergenic 15.0%
!! TTTATTATAAAGTTTGCGTT+CGG - chr7_4:55135851-55135870 None:intergenic 20.0%
!! TCATTGATATTCATATGATA+TGG - chr7_4:55136083-55136102 None:intergenic 20.0%
!! CATATGAATATCAATGATTT+CGG + chr7_4:55136086-55136105 Msa1163770:intron 20.0%
!!! TAACTGAATTTGTTCTTTTT+TGG + chr7_4:55136388-55136407 Msa1163770:intron 20.0%
!! TATACAAATACAATGATCTT+TGG + chr7_4:55136445-55136464 Msa1163770:intron 20.0%
!!! TTGATTATTTTTGAACACTT+AGG + chr7_4:55136664-55136683 Msa1163770:intron 20.0%
!! ATTTCACAAAATGGTTAAAA+GGG - chr7_4:55138310-55138329 None:intergenic 20.0%
!!! TTTTAACCATTTTGTGAAAT+CGG + chr7_4:55138310-55138329 Msa1163770:intron 20.0%
!! ATAAATTGCATCCTTATATA+AGG - chr7_4:55138386-55138405 None:intergenic 20.0%
!! TTTCAAATTTCATGTTATTC+TGG + chr7_4:55138427-55138446 Msa1163770:intron 20.0%
!! AATTTCATAGTTAGTTGTAT+AGG + chr7_4:55138459-55138478 Msa1163770:intron 20.0%
!!! GTTTATTTTCAGTACATAAT+TGG + chr7_4:55139002-55139021 Msa1163770:intron 20.0%
!!! TTATCAATAACTTGTGTTAT+AGG + chr7_4:55139599-55139618 Msa1163770:intron 20.0%
!!! AAATTCATATCTTTTGTATC+CGG + chr7_4:55139717-55139736 Msa1163770:CDS 20.0%
!! AAAATATCATTGCAGATATT+TGG + chr7_4:55139876-55139895 Msa1163770:intron 20.0%
!! ACAATAAACAGAAGTAAATA+TGG - chr7_4:55140276-55140295 None:intergenic 20.0%
!! TACTTGGAGATTTATTTATA+TGG + chr7_4:55140313-55140332 Msa1163770:intron 20.0%
!!! GCCAGTAAAATAATTTTTTT+TGG + chr7_4:55140956-55140975 Msa1163770:intron 20.0%
!! CATGATAATTATATGTTGTT+TGG - chr7_4:55141651-55141670 None:intergenic 20.0%
!! AAACTCTTTTCTTTACTTCA+AGG + chr7_4:55136033-55136052 Msa1163770:five_prime_UTR 25.0%
! CATATGATATGGAAAAGAAA+GGG - chr7_4:55136072-55136091 None:intergenic 25.0%
! TCATATGATATGGAAAAGAA+AGG - chr7_4:55136073-55136092 None:intergenic 25.0%
! CAACTATCTTAACTATTCAT+TGG - chr7_4:55136538-55136557 None:intergenic 25.0%
! AGTTAAGATAGTTGAAAATG+CGG + chr7_4:55136544-55136563 Msa1163770:intron 25.0%
!! ACATTTGAAGATGATGTTTT+AGG + chr7_4:55136750-55136769 Msa1163770:intron 25.0%
!! TTTGAATATACTAAAAGCAC+CGG - chr7_4:55137208-55137227 None:intergenic 25.0%
!! GTGCTTTTAGTATATTCAAA+TGG + chr7_4:55137208-55137227 Msa1163770:CDS 25.0%
! ATATTCAAATGGAAACAGAA+AGG + chr7_4:55137219-55137238 Msa1163770:CDS 25.0%
!! AAAAAATCCTGAAAAGCATA+TGG - chr7_4:55137490-55137509 None:intergenic 25.0%
!! TTACTATATGTTGATTGGAA+TGG + chr7_4:55137510-55137529 Msa1163770:CDS 25.0%
!! TACTATATGTTGATTGGAAT+GGG + chr7_4:55137511-55137530 Msa1163770:CDS 25.0%
! TAAACAACTAAAATGCATTG+AGG + chr7_4:55137780-55137799 Msa1163770:intron 25.0%
!! AACAACTTTGTCAACAATTT+TGG - chr7_4:55137907-55137926 None:intergenic 25.0%
!! GTATGAATTATTGTCTTTTG+AGG + chr7_4:55138267-55138286 Msa1163770:intron 25.0%
! AAATGGTTAAAAGGGAAAAT+TGG - chr7_4:55138302-55138321 None:intergenic 25.0%
! GATTTCACAAAATGGTTAAA+AGG - chr7_4:55138311-55138330 None:intergenic 25.0%
! ATAAGGATGCAATTTATATC+TGG + chr7_4:55138389-55138408 Msa1163770:intron 25.0%
!! AGGTATCATATTCATTTTCT+TGG + chr7_4:55138852-55138871 Msa1163770:intron 25.0%
! GAAGAGAAAATGAAAGAAAA+TGG - chr7_4:55138882-55138901 None:intergenic 25.0%
! AACTGAATAAAATATGCACT+TGG - chr7_4:55138985-55139004 None:intergenic 25.0%
! AACTTCAAATCTTTCTTTCA+TGG - chr7_4:55139132-55139151 None:intergenic 25.0%
!!! CTTGCATATTTTTTTGAAAC+AGG + chr7_4:55139334-55139353 Msa1163770:intron 25.0%
! TGTAACATAGTTATTTGACT+TGG + chr7_4:55139392-55139411 Msa1163770:intron 25.0%
!! TAATTCTAAAAACGATAACC+AGG - chr7_4:55139544-55139563 None:intergenic 25.0%
! TTTGCAATGATAGATATGAT+AGG - chr7_4:55139699-55139718 None:intergenic 25.0%
! ATAAGGTTTCAAATTCAATG+CGG - chr7_4:55140073-55140092 None:intergenic 25.0%
!! CATAATGTGAATGTATTGAT+CGG - chr7_4:55140119-55140138 None:intergenic 25.0%
! TTCAACATTTACAGTGAAAT+CGG - chr7_4:55140414-55140433 None:intergenic 25.0%
! CTCATAAGACAAAATTCATT+AGG + chr7_4:55140724-55140743 Msa1163770:intron 25.0%
! TAAGACAAAATTCATTAGGA+AGG + chr7_4:55140728-55140747 Msa1163770:intron 25.0%
!!! GTGCATGCTTTTTAATTTTT+TGG + chr7_4:55140837-55140856 Msa1163770:intron 25.0%
! TTTGAGTATTCTTCATAGTT+GGG - chr7_4:55141436-55141455 None:intergenic 25.0%
! ATTTGAGTATTCTTCATAGT+TGG - chr7_4:55141437-55141456 None:intergenic 25.0%
!! GGAGAATTTAATCTACATTT+TGG + chr7_4:55141781-55141800 Msa1163770:CDS 25.0%
! TTCCAAATAACAATTAGAGA+GGG - chr7_4:55141958-55141977 None:intergenic 25.0%
! TTTCCAAATAACAATTAGAG+AGG - chr7_4:55141959-55141978 None:intergenic 25.0%
!! TTTGCTGTATATAGATTCAT+TGG + chr7_4:55141987-55142006 Msa1163770:three_prime_UTR 25.0%
!! GATTTTTGTTTATAGTTGCG+TGG - chr7_4:55135942-55135961 None:intergenic 30.0%
! GTTTGCATATTTTGTAACGT+TGG + chr7_4:55136243-55136262 Msa1163770:intron 30.0%
!!! CTTTTTTGGTCTGACATTTA+TGG + chr7_4:55136402-55136421 Msa1163770:intron 30.0%
TGGAGCAATTATCATAACAT+GGG - chr7_4:55136596-55136615 None:intergenic 30.0%
ATGGAGCAATTATCATAACA+TGG - chr7_4:55136597-55136616 None:intergenic 30.0%
TGTTATGATAATTGCTCCAT+TGG + chr7_4:55136597-55136616 Msa1163770:intron 30.0%
GTTATGATAATTGCTCCATT+GGG + chr7_4:55136598-55136617 Msa1163770:intron 30.0%
ACAAATACACATTGCCAATT+TGG - chr7_4:55136629-55136648 None:intergenic 30.0%
AAAGTTTGAGAGAGAAAGTT+AGG - chr7_4:55136694-55136713 None:intergenic 30.0%
TCATTAACTGGTAGAAATCT+TGG + chr7_4:55136845-55136864 Msa1163770:intron 30.0%
GAAAAATAAAAGCGAAGACA+AGG - chr7_4:55136972-55136991 None:intergenic 30.0%
TTGCAAATTGCATTCCTATT+TGG - chr7_4:55137013-55137032 None:intergenic 30.0%
!! TTATAACCGTTTTGGTCTTT+GGG + chr7_4:55137117-55137136 Msa1163770:five_prime_UTR 30.0%
TAATTAGACAATTCGATCTC+CGG - chr7_4:55137285-55137304 None:intergenic 30.0%
GAGATCGAATTGTCTAATTA+CGG + chr7_4:55137285-55137304 Msa1163770:CDS 30.0%
! CTCTTCTTTGAAAGACTTTA+TGG + chr7_4:55137393-55137412 Msa1163770:CDS 30.0%
TATGGTGTATTGTTACAAAG+TGG + chr7_4:55137436-55137455 Msa1163770:CDS 30.0%
ATTGTTGAACTTCTAAGTCT+GGG + chr7_4:55137459-55137478 Msa1163770:CDS 30.0%
CTTACCAAAGCTATTATTGT+TGG + chr7_4:55137636-55137655 Msa1163770:CDS 30.0%
GTATCCAACAATAATAGCTT+TGG - chr7_4:55137643-55137662 None:intergenic 30.0%
AGCTATTATTGTTGGATACT+TGG + chr7_4:55137644-55137663 Msa1163770:CDS 30.0%
GCTATTATTGTTGGATACTT+GGG + chr7_4:55137645-55137664 Msa1163770:CDS 30.0%
CTATTATTGTTGGATACTTG+GGG + chr7_4:55137646-55137665 Msa1163770:CDS 30.0%
GAAACAAAACATCCAATAGA+AGG - chr7_4:55137679-55137698 None:intergenic 30.0%
TTGTTCTCGTTCAAAATACT+CGG + chr7_4:55137922-55137941 Msa1163770:CDS 30.0%
TTAATTGGAATGCTCAACAA+GGG + chr7_4:55138014-55138033 Msa1163770:CDS 30.0%
! CCAATTTAAAGTCCATTCAA+GGG - chr7_4:55138138-55138157 None:intergenic 30.0%
! ACCAATTTAAAGTCCATTCA+AGG - chr7_4:55138139-55138158 None:intergenic 30.0%
! AACAAACCGATTTCACAAAA+TGG - chr7_4:55138319-55138338 None:intergenic 30.0%
TTGTTTGTTTGAAGGATAGA+AGG + chr7_4:55138338-55138357 Msa1163770:intron 30.0%
ATAGTTAGTTGTATAGGAGT+TGG + chr7_4:55138465-55138484 Msa1163770:intron 30.0%
GATTGACATATGTTGTGATT+TGG + chr7_4:55138528-55138547 Msa1163770:intron 30.0%
ATCCAAAGACATTACAGAAA+AGG + chr7_4:55138663-55138682 Msa1163770:CDS 30.0%
!! GATTTTTAGGGAATACAATG+AGG + chr7_4:55138832-55138851 Msa1163770:CDS 30.0%
!! ACATAGTATAGAAGTGTCTA+TGG - chr7_4:55138956-55138975 None:intergenic 30.0%
AGTTATCCAAAAACCTTTGA+TGG + chr7_4:55139040-55139059 Msa1163770:intron 30.0%
TTATATACACAACCACTGAT+GGG - chr7_4:55139069-55139088 None:intergenic 30.0%
ATTATATACACAACCACTGA+TGG - chr7_4:55139070-55139089 None:intergenic 30.0%
CATGCATTCTCTGTTAATAT+CGG + chr7_4:55139095-55139114 Msa1163770:intron 30.0%
ATTTATGAGTGACCACATTA+TGG + chr7_4:55139277-55139296 Msa1163770:intron 30.0%
ACTAGAATAACACCATAATG+TGG - chr7_4:55139292-55139311 None:intergenic 30.0%
CTTTCAAACAACATAAATGC+TGG - chr7_4:55139418-55139437 None:intergenic 30.0%
! GCTATTGTTTGGTAGTATAA+AGG - chr7_4:55139444-55139463 None:intergenic 30.0%
CACAAGTTATTGATAAGCTT+TGG - chr7_4:55139595-55139614 None:intergenic 30.0%
ATGATAGATATGATAGGTGT+AGG - chr7_4:55139693-55139712 None:intergenic 30.0%
ATCAACAGAAGTTCATTACA+TGG - chr7_4:55139800-55139819 None:intergenic 30.0%
TATCATTGCAGATATTTGGT+CGG + chr7_4:55139880-55139899 Msa1163770:intron 30.0%
! TGAATTTGAAACCTTATTCC+AGG + chr7_4:55140076-55140095 Msa1163770:CDS 30.0%
! TGCTCATGTTTTTCTTTGTA+TGG + chr7_4:55140197-55140216 Msa1163770:intron 30.0%
GATTTCACTGTAAATGTTGA+AGG + chr7_4:55140413-55140432 Msa1163770:CDS 30.0%
! ATATTTTCTGCCATAAGCTA+TGG - chr7_4:55140540-55140559 None:intergenic 30.0%
ACAATGTTTATACTCTCAGT+TGG + chr7_4:55140876-55140895 Msa1163770:intron 30.0%
TAGTACCAATCAAGAAGATA+GGG - chr7_4:55141301-55141320 None:intergenic 30.0%
!! GTTATTCCATATGGTTCTAA+TGG - chr7_4:55141361-55141380 None:intergenic 30.0%
TAACGTTCTGTTATTCCATA+TGG - chr7_4:55141370-55141389 None:intergenic 30.0%
! ATGACAAGTTTTCTGATAGA+GGG + chr7_4:55141668-55141687 Msa1163770:CDS 30.0%
AAACAAAAAATGTGGGAAAG+GGG - chr7_4:55141883-55141902 None:intergenic 30.0%
CAAACAAAAAATGTGGGAAA+GGG - chr7_4:55141884-55141903 None:intergenic 30.0%
TATATAGATTCATTGGTGTG+AGG + chr7_4:55141994-55142013 Msa1163770:three_prime_UTR 30.0%
TTATAAAGTTTGCGTTCGGA+AGG - chr7_4:55135847-55135866 None:intergenic 35.0%
! TTTGCACAGAAATTTTGCCT+CGG - chr7_4:55136487-55136506 None:intergenic 35.0%
! ACAACTTTTCTCTCATGATC+AGG + chr7_4:55136814-55136833 Msa1163770:five_prime_UTR 35.0%
! TTTTCTCTCATGATCAGGTA+TGG + chr7_4:55136819-55136838 Msa1163770:intron 35.0%
! CAGGTATGGTTTTCATTAAC+TGG + chr7_4:55136833-55136852 Msa1163770:intron 35.0%
!! GTTTATTTGGGTTGCCAAAT+AGG + chr7_4:55136996-55137015 Msa1163770:intron 35.0%
!! GAACCTTGTTATAACCGTTT+TGG + chr7_4:55137109-55137128 Msa1163770:intron 35.0%
AGACCAAAACGGTTATAACA+AGG - chr7_4:55137115-55137134 None:intergenic 35.0%
!! GTTATAACCGTTTTGGTCTT+TGG + chr7_4:55137116-55137135 Msa1163770:five_prime_UTR 35.0%
!! TATAACCGTTTTGGTCTTTG+GGG + chr7_4:55137118-55137137 Msa1163770:five_prime_UTR 35.0%
TGTTCACAGACACTAATAGT+AGG - chr7_4:55137163-55137182 None:intergenic 35.0%
TTTACTTCATGATGATTCGC+CGG + chr7_4:55137263-55137282 Msa1163770:CDS 35.0%
TCGAATTGTCTAATTACGGA+AGG + chr7_4:55137289-55137308 Msa1163770:CDS 35.0%
CATATACACTTTCTCCATTG+AGG - chr7_4:55137350-55137369 None:intergenic 35.0%
! TGTAGAACCAATTGCTGATT+TGG + chr7_4:55137368-55137387 Msa1163770:CDS 35.0%
AAGAGATCCAAATCAGCAAT+TGG - chr7_4:55137378-55137397 None:intergenic 35.0%
TATGGTTACTACTGTGAGAA+AGG + chr7_4:55137411-55137430 Msa1163770:CDS 35.0%
ATGGTTACTACTGTGAGAAA+GGG + chr7_4:55137412-55137431 Msa1163770:CDS 35.0%
GATTGTTGAACTTCTAAGTC+TGG + chr7_4:55137458-55137477 Msa1163770:CDS 35.0%
TTGTTGAACTTCTAAGTCTG+GGG + chr7_4:55137460-55137479 Msa1163770:CDS 35.0%
!!! TGGGGATTTTTTCCTTCTAT+TGG + chr7_4:55137664-55137683 Msa1163770:CDS 35.0%
AGACAAAAACATGTGAACTG+TGG - chr7_4:55137821-55137840 None:intergenic 35.0%
ATGAAATTCAAACTATGCCC+TGG + chr7_4:55137880-55137899 Msa1163770:CDS 35.0%
TGAAATTCAAACTATGCCCT+GGG + chr7_4:55137881-55137900 Msa1163770:CDS 35.0%
CAGTCTCATGACTATATCAT+GGG - chr7_4:55137976-55137995 None:intergenic 35.0%
TCAGTCTCATGACTATATCA+TGG - chr7_4:55137977-55137996 None:intergenic 35.0%
ATATAGTCATGAGACTGATG+CGG + chr7_4:55137979-55137998 Msa1163770:CDS 35.0%
CTTAATTGGAATGCTCAACA+AGG + chr7_4:55138013-55138032 Msa1163770:CDS 35.0%
TCAGGACTAGATTGAACTTT+CGG - chr7_4:55138083-55138102 None:intergenic 35.0%
AAAGTTCAATCTAGTCCTGA+TGG + chr7_4:55138083-55138102 Msa1163770:CDS 35.0%
! CCCTTGAATGGACTTTAAAT+TGG + chr7_4:55138135-55138154 Msa1163770:CDS 35.0%
TCCTACATAGCATGTTTGAT+CGG + chr7_4:55138162-55138181 Msa1163770:CDS 35.0%
CACTCTGATTGTACAACTAA+AGG - chr7_4:55138210-55138229 None:intergenic 35.0%
! CGGTTTGTTTGTTTGTTTGA+AGG + chr7_4:55138330-55138349 Msa1163770:intron 35.0%
! CATCCTTATATAAGGTACCA+TGG - chr7_4:55138378-55138397 None:intergenic 35.0%
GTAGCAAAAGTCATGTTCAA+AGG - chr7_4:55138609-55138628 None:intergenic 35.0%
! TTGAACATGACTTTTGCTAC+AGG + chr7_4:55138609-55138628 Msa1163770:intron 35.0%
! AGCCTTTTCTGTAATGTCTT+TGG - chr7_4:55138668-55138687 None:intergenic 35.0%
GACATTACAGAAAAGGCTTA+TGG + chr7_4:55138670-55138689 Msa1163770:CDS 35.0%
AGAAAAGGCTTATGGTAGTT+GGG + chr7_4:55138678-55138697 Msa1163770:CDS 35.0%
AGCATGAATATGACAAGGAA+TGG - chr7_4:55138725-55138744 None:intergenic 35.0%
ATTCCTTGTCATATTCATGC+TGG + chr7_4:55138724-55138743 Msa1163770:CDS 35.0%
!! ACTTGTCTAGGTGGATTTTT+AGG + chr7_4:55138819-55138838 Msa1163770:CDS 35.0%
!! CTTGTCTAGGTGGATTTTTA+GGG + chr7_4:55138820-55138839 Msa1163770:CDS 35.0%
!!! CTTCTCTTTTGTTGCTTTCA+TGG + chr7_4:55138898-55138917 Msa1163770:intron 35.0%
TATCCAAAAACCTTTGATGG+AGG + chr7_4:55139043-55139062 Msa1163770:intron 35.0%
ATTAACAGAGAATGCATGGA+TGG - chr7_4:55139093-55139112 None:intergenic 35.0%
CGATATTAACAGAGAATGCA+TGG - chr7_4:55139097-55139116 None:intergenic 35.0%
TTCTAGTCACCTAGCATTAA+CGG + chr7_4:55139305-55139324 Msa1163770:intron 35.0%
AAGAATAAGCCGTTAATGCT+AGG - chr7_4:55139317-55139336 None:intergenic 35.0%
AATGTCATATGCAACCTACA+TGG - chr7_4:55139466-55139485 None:intergenic 35.0%
! TTCATATCTTTTGTATCCGG+TGG + chr7_4:55139720-55139739 Msa1163770:CDS 35.0%
TTACCGAGTTCATAATGTCA+TGG + chr7_4:55139822-55139841 Msa1163770:intron 35.0%
!! TATTTGGTCGGAACTTGTTT+TGG + chr7_4:55139892-55139911 Msa1163770:CDS 35.0%
!!! TTTTGGTATGCTGCTGTTTT+TGG + chr7_4:55139909-55139928 Msa1163770:CDS 35.0%
GAACTATAACTGCTATTAGC+CGG + chr7_4:55139931-55139950 Msa1163770:CDS 35.0%
AACTATAACTGCTATTAGCC+GGG + chr7_4:55139932-55139951 Msa1163770:CDS 35.0%
CACATTATATGCCAAAGAGA+TGG + chr7_4:55140021-55140040 Msa1163770:CDS 35.0%
AAGAAAAACATGAGCACGAA+AGG - chr7_4:55140193-55140212 None:intergenic 35.0%
! TACAGCAATGATGTTACTTG+AGG + chr7_4:55140227-55140246 Msa1163770:CDS 35.0%
! AATGATGTTACTTGAGGAGA+TGG + chr7_4:55140233-55140252 Msa1163770:CDS 35.0%
ACAGAAGTAAATATGGAGTG+AGG - chr7_4:55140269-55140288 None:intergenic 35.0%
ACTTCTGTTTATTGTCCCAA+AGG + chr7_4:55140281-55140300 Msa1163770:CDS 35.0%
CAAGTACGAAAATGACCTTT+GGG - chr7_4:55140299-55140318 None:intergenic 35.0%
CTGTGAAATGCAGTATACTT+AGG - chr7_4:55140339-55140358 None:intergenic 35.0%
! ACTGTAAATGTTGAAGGTGT+TGG + chr7_4:55140419-55140438 Msa1163770:CDS 35.0%
!! CTGTAAATGTTGAAGGTGTT+GGG + chr7_4:55140420-55140439 Msa1163770:CDS 35.0%
GTACATCTGTAACATTCTCT+AGG + chr7_4:55140491-55140510 Msa1163770:intron 35.0%
TGTCTCAATTCCATAGCTTA+TGG + chr7_4:55140527-55140546 Msa1163770:intron 35.0%
!! ACCTTTGATTTTCAAGAGCA+TGG + chr7_4:55140595-55140614 Msa1163770:CDS 35.0%
TCCATGCTCTTGAAAATCAA+AGG - chr7_4:55140599-55140618 None:intergenic 35.0%
AGATGGAGAAATCATTGTTG+AGG + chr7_4:55140677-55140696 Msa1163770:CDS 35.0%
GAGAAATCATTGTTGAGGTA+TGG + chr7_4:55140682-55140701 Msa1163770:intron 35.0%
TCTGAGAAAAGAGTTGACTA+TGG - chr7_4:55140928-55140947 None:intergenic 35.0%
TTCAGAGTAGTTATCCATCA+TGG + chr7_4:55141035-55141054 Msa1163770:CDS 35.0%
TCAGAGTAGTTATCCATCAT+GGG + chr7_4:55141036-55141055 Msa1163770:CDS 35.0%
ATCTTAGAACATTCAGAGAG+CGG + chr7_4:55141092-55141111 Msa1163770:CDS 35.0%
ACAGAAACAGGTTTATATCC+AGG + chr7_4:55141197-55141216 Msa1163770:CDS 35.0%
CAGAAACAGGTTTATATCCA+GGG + chr7_4:55141198-55141217 Msa1163770:CDS 35.0%
AGTACCAATCAAGAAGATAG+GGG - chr7_4:55141300-55141319 None:intergenic 35.0%
GTAGTACCAATCAAGAAGAT+AGG - chr7_4:55141302-55141321 None:intergenic 35.0%
GATGTTCCATTAGAACCATA+TGG + chr7_4:55141352-55141371 Msa1163770:CDS 35.0%
ATACTCAAATGAGTATCACG+AGG + chr7_4:55141447-55141466 Msa1163770:CDS 35.0%
GTTGTTTGGTCATTGAAATC+TGG - chr7_4:55141637-55141656 None:intergenic 35.0%
! CATGACAAGTTTTCTGATAG+AGG + chr7_4:55141667-55141686 Msa1163770:CDS 35.0%
! ACCAAGAACAACACTTTTAC+TGG + chr7_4:55141704-55141723 Msa1163770:CDS 35.0%
!! TCCAGTAAAAGTGTTGTTCT+TGG - chr7_4:55141708-55141727 None:intergenic 35.0%
AACAATGACAGATGACTTAG+AGG + chr7_4:55141756-55141775 Msa1163770:CDS 35.0%
! GAATTTATAGTGGGAGTTTC+TGG - chr7_4:55141826-55141845 None:intergenic 35.0%
CCAAACAAAAAATGTGGGAA+AGG - chr7_4:55141885-55141904 None:intergenic 35.0%
!!! CCTTTCCCACATTTTTTGTT+TGG + chr7_4:55141882-55141901 Msa1163770:three_prime_UTR 35.0%
!!! TCCCACATTTTTTGTTTGGA+AGG + chr7_4:55141886-55141905 Msa1163770:three_prime_UTR 35.0%
CCCTTCCAAACAAAAAATGT+GGG - chr7_4:55141890-55141909 None:intergenic 35.0%
!!! CCCACATTTTTTGTTTGGAA+GGG + chr7_4:55141887-55141906 Msa1163770:three_prime_UTR 35.0%
ACCCTTCCAAACAAAAAATG+TGG - chr7_4:55141891-55141910 None:intergenic 35.0%
!! GAAGGGTGCTTTCAATTAAA+TGG + chr7_4:55141904-55141923 Msa1163770:three_prime_UTR 35.0%
! GTCCCTCTCTAATTGTTATT+TGG + chr7_4:55141953-55141972 Msa1163770:three_prime_UTR 35.0%
TCCTTACATCTGAAAATGGA+AGG - chr7_4:55142077-55142096 None:intergenic 35.0%
! AGGAGATGAGCATAGGTTTT+TGG - chr7_4:55135827-55135846 None:intergenic 40.0%
AGATGATGAAACAGTAGCGA+AGG - chr7_4:55136011-55136030 None:intergenic 40.0%
GAGACACAAATACAGAAACG+TGG - chr7_4:55136137-55136156 None:intergenic 40.0%
GATTATTATCGTTGTCGACG+AGG - chr7_4:55136286-55136305 None:intergenic 40.0%
! TCCATTGGGTTGTTCCAAAT+TGG + chr7_4:55136612-55136631 Msa1163770:intron 40.0%
CAAATATGGGCAACTTGACA+AGG - chr7_4:55136935-55136954 None:intergenic 40.0%
! CTTGTCAAGTTGCCCATATT+TGG + chr7_4:55136933-55136952 Msa1163770:intron 40.0%
ATGAATCGCCAGCCAAATAT+GGG - chr7_4:55136948-55136967 None:intergenic 40.0%
TATGAATCGCCAGCCAAATA+TGG - chr7_4:55136949-55136968 None:intergenic 40.0%
ACAATGTTTAGCAGACCAAG+TGG + chr7_4:55137180-55137199 Msa1163770:exon 40.0%
CTCCATTGAGGAAATCTGAA+GGG - chr7_4:55137338-55137357 None:intergenic 40.0%
TCTCCATTGAGGAAATCTGA+AGG - chr7_4:55137339-55137358 None:intergenic 40.0%
ACTACTGTGAGAAAGGGTTA+TGG + chr7_4:55137418-55137437 Msa1163770:CDS 40.0%
! CCATCCCACATTTTGCATTA+CGG - chr7_4:55137539-55137558 None:intergenic 40.0%
TAAGTGTGAGTGGGGTTAAA+GGG - chr7_4:55137620-55137639 None:intergenic 40.0%
!! TAGCTTTGGTAAGTGTGAGT+GGG - chr7_4:55137629-55137648 None:intergenic 40.0%
!! ATAGCTTTGGTAAGTGTGAG+TGG - chr7_4:55137630-55137649 None:intergenic 40.0%
TTAGTTGAGCAAAGAATCGC+AGG - chr7_4:55137701-55137720 None:intergenic 40.0%
GCGATTCTTTGCTCAACTAA+AGG + chr7_4:55137701-55137720 Msa1163770:CDS 40.0%
CTTACCTGCTGTAGAAAAAC+TGG - chr7_4:55137743-55137762 None:intergenic 40.0%
CTAAAATGCATTGAGGCAGT+TGG + chr7_4:55137787-55137806 Msa1163770:intron 40.0%
!! TTGTCAACAATTTTGGCCCA+GGG - chr7_4:55137900-55137919 None:intergenic 40.0%
!! TTTGTCAACAATTTTGGCCC+AGG - chr7_4:55137901-55137920 None:intergenic 40.0%
CGGAAGGAGAACTACTTAAT+TGG + chr7_4:55137999-55138018 Msa1163770:CDS 40.0%
TTGCTTTCCCCATTTCACAA+TGG + chr7_4:55138042-55138061 Msa1163770:CDS 40.0%
CTGGAAACCATTGTGAAATG+GGG - chr7_4:55138052-55138071 None:intergenic 40.0%
CCTGGAAACCATTGTGAAAT+GGG - chr7_4:55138053-55138072 None:intergenic 40.0%
ACCTGGAAACCATTGTGAAA+TGG - chr7_4:55138054-55138073 None:intergenic 40.0%
CAGGACTAGATTGAACTTTC+GGG - chr7_4:55138082-55138101 None:intergenic 40.0%
AAACGATATTGTGCTCCATC+AGG - chr7_4:55138101-55138120 None:intergenic 40.0%
TACTTACCAAGACCCTTGAA+TGG + chr7_4:55138123-55138142 Msa1163770:CDS 40.0%
TAAAGTCCATTCAAGGGTCT+TGG - chr7_4:55138132-55138151 None:intergenic 40.0%
ACCGATCAAACATGCTATGT+AGG - chr7_4:55138166-55138185 None:intergenic 40.0%
AGGACTATTTAGATGCTCCA+TGG + chr7_4:55138358-55138377 Msa1163770:intron 40.0%
GCTCCATGGTACCTTATATA+AGG + chr7_4:55138372-55138391 Msa1163770:intron 40.0%
! ACAGGAACTTTTGTGTCAGA+AGG + chr7_4:55138627-55138646 Msa1163770:intron 40.0%
! CAGGAACTTTTGTGTCAGAA+GGG + chr7_4:55138628-55138647 Msa1163770:intron 40.0%
CAGAAAAGGCTTATGGTAGT+TGG + chr7_4:55138677-55138696 Msa1163770:CDS 40.0%
ATGCCAGCATGAATATGACA+AGG - chr7_4:55138730-55138749 None:intergenic 40.0%
GAAGATGGTCAAACTTGTCT+AGG + chr7_4:55138807-55138826 Msa1163770:CDS 40.0%
CTACCAAACAATAGCCATGT+AGG + chr7_4:55139449-55139468 Msa1163770:intron 40.0%
CAACCTACATGGCTATTGTT+TGG - chr7_4:55139455-55139474 None:intergenic 40.0%
TATATGTCTTCTGCTGTACC+TGG + chr7_4:55139523-55139542 Msa1163770:intron 40.0%
CTGCCATGACATTATGAACT+CGG - chr7_4:55139828-55139847 None:intergenic 40.0%
AATGTCATGGCAGTCGTTAA+AGG + chr7_4:55139835-55139854 Msa1163770:intron 40.0%
ACCATAGATATTGTTCCCTC+GGG - chr7_4:55139990-55140009 None:intergenic 40.0%
CACCATAGATATTGTTCCCT+CGG - chr7_4:55139991-55140010 None:intergenic 40.0%
TGGCAAAGAAATTACTGACG+TGG + chr7_4:55140046-55140065 Msa1163770:CDS 40.0%
TTATTCCAGGTATTCTGCCT+GGG + chr7_4:55140089-55140108 Msa1163770:intron 40.0%
CCAAGTACGAAAATGACCTT+TGG - chr7_4:55140300-55140319 None:intergenic 40.0%
!! CCAAAGGTCATTTTCGTACT+TGG + chr7_4:55140297-55140316 Msa1163770:intron 40.0%
GAGCATGGAAACTCTCATTA+TGG + chr7_4:55140610-55140629 Msa1163770:CDS 40.0%
!! TGCTACGAGAGGCATTATAT+GGG - chr7_4:55140639-55140658 None:intergenic 40.0%
TCATTGTTGAGGTATGGTCT+TGG + chr7_4:55140688-55140707 Msa1163770:intron 40.0%
! TAAAAAGCATGCACACACAG+AGG - chr7_4:55140831-55140850 None:intergenic 40.0%
! TGAGTATTTGGTTCCCATGA+TGG - chr7_4:55141052-55141071 None:intergenic 40.0%
ATCATGGGAACCAAATACTC+AGG + chr7_4:55141051-55141070 Msa1163770:CDS 40.0%
TCATGGGAACCAAATACTCA+GGG + chr7_4:55141052-55141071 Msa1163770:CDS 40.0%
! TTTTGCAACTGGCAATCACT+TGG + chr7_4:55141237-55141256 Msa1163770:CDS 40.0%
ATAGGGGTGATTATTCTGGT+TGG - chr7_4:55141284-55141303 None:intergenic 40.0%
GAAGATAGGGGTGATTATTC+TGG - chr7_4:55141288-55141307 None:intergenic 40.0%
ATCACCCCTATCTTCTTGAT+TGG + chr7_4:55141293-55141312 Msa1163770:CDS 40.0%
!! TCATTCTGTGTCAAGTTGGA+AGG - chr7_4:55141412-55141431 None:intergenic 40.0%
CAAATGAGTATCACGAGGAT+CGG + chr7_4:55141452-55141471 Msa1163770:CDS 40.0%
AAATGAGTATCACGAGGATC+GGG + chr7_4:55141453-55141472 Msa1163770:CDS 40.0%
GTTTGGTCATTGAAATCTGG+AGG - chr7_4:55141634-55141653 None:intergenic 40.0%
! TTTATAGTGGGAGTTTCTGG+AGG - chr7_4:55141823-55141842 None:intergenic 40.0%
! GCAGTGCTGGAATTTATAGT+GGG - chr7_4:55141835-55141854 None:intergenic 40.0%
! AGCAGTGCTGGAATTTATAG+TGG - chr7_4:55141836-55141855 None:intergenic 40.0%
TATGAACCTCAGCTTGATGT+TGG + chr7_4:55142028-55142047 Msa1163770:three_prime_UTR 40.0%
TAAGTTCCAACATCAAGCTG+AGG - chr7_4:55142037-55142056 None:intergenic 40.0%
! GCCTTCCATTTTCAGATGTA+AGG + chr7_4:55142073-55142092 Msa1163770:three_prime_UTR 40.0%
GATGAAACAGTAGCGAAGGA+AGG - chr7_4:55136007-55136026 None:intergenic 45.0%
GAATTGAAGTTAGCAGTCCG+AGG + chr7_4:55136467-55136486 Msa1163770:intron 45.0%
! GCCAATTTGGAACAACCCAA+TGG - chr7_4:55136616-55136635 None:intergenic 45.0%
! TCAAGTTGCCCATATTTGGC+TGG + chr7_4:55136937-55136956 Msa1163770:intron 45.0%
CCATTCCCCAAAGACCAAAA+CGG - chr7_4:55137126-55137145 None:intergenic 45.0%
! TTGGTCTTTGGGGAATGGAT+TGG + chr7_4:55137128-55137147 Msa1163770:five_prime_UTR 45.0%
TTTAGCAGACCAAGTGGTTC+CGG + chr7_4:55137186-55137205 Msa1163770:CDS 45.0%
AGCCCTTCAGATTTCCTCAA+TGG + chr7_4:55137333-55137352 Msa1163770:CDS 45.0%
! GGGTTCACCATATGCTTTTC+AGG + chr7_4:55137480-55137499 Msa1163770:CDS 45.0%
GGCTCCGTAATGCAAAATGT+GGG + chr7_4:55137532-55137551 Msa1163770:CDS 45.0%
CCGTAATGCAAAATGTGGGA+TGG + chr7_4:55137536-55137555 Msa1163770:CDS 45.0%
GGAATTAAGCCCTGTGATCT+TGG + chr7_4:55137573-55137592 Msa1163770:CDS 45.0%
GCTTCTTTGCCAAGATCACA+GGG - chr7_4:55137585-55137604 None:intergenic 45.0%
AGCTTCTTTGCCAAGATCAC+AGG - chr7_4:55137586-55137605 None:intergenic 45.0%
GTAAGTGTGAGTGGGGTTAA+AGG - chr7_4:55137621-55137640 None:intergenic 45.0%
! AGCTTTGGTAAGTGTGAGTG+GGG - chr7_4:55137628-55137647 None:intergenic 45.0%
! TACGCCAGTTTTTCTACAGC+AGG + chr7_4:55137736-55137755 Msa1163770:CDS 45.0%
TCGGAAACTATGTGTGCTGA+AGG + chr7_4:55137941-55137960 Msa1163770:CDS 45.0%
CCCATTTCACAATGGTTTCC+AGG + chr7_4:55138050-55138069 Msa1163770:CDS 45.0%
TGCTGGCATATCTCTTTCTG+AGG + chr7_4:55138741-55138760 Msa1163770:CDS 45.0%
TTCGAGATGATGCTGTGCTT+GGG - chr7_4:55138790-55138809 None:intergenic 45.0%
GATGGTCAAACTTGTCTAGG+TGG + chr7_4:55138810-55138829 Msa1163770:CDS 45.0%
TATAGGTCGACCATCTCTTC+AGG + chr7_4:55139616-55139635 Msa1163770:intron 45.0%
TAATCCGATGCCTGAAGAGA+TGG - chr7_4:55139629-55139648 None:intergenic 45.0%
TGCAATTGCAGATGAGCTTC+TGG + chr7_4:55139956-55139975 Msa1163770:CDS 45.0%
TCCCGAGGGAACAATATCTA+TGG + chr7_4:55139986-55140005 Msa1163770:CDS 45.0%
CGAGGGAACAATATCTATGG+TGG + chr7_4:55139989-55140008 Msa1163770:CDS 45.0%
TATATGCCAAAGAGATGGCG+TGG + chr7_4:55140026-55140045 Msa1163770:CDS 45.0%
CAGGCAGAATACCTGGAATA+AGG - chr7_4:55140090-55140109 None:intergenic 45.0%
CTTATTCCAGGTATTCTGCC+TGG + chr7_4:55140088-55140107 Msa1163770:intron 45.0%
TATTCCAGGTATTCTGCCTG+GGG + chr7_4:55140090-55140109 Msa1163770:intron 45.0%
!! GCTACGAGAGGCATTATATG+GGG - chr7_4:55140638-55140657 None:intergenic 45.0%
!! CTGCTACGAGAGGCATTATA+TGG - chr7_4:55140640-55140659 None:intergenic 45.0%
ATAATGCCTCTCGTAGCAGA+AGG + chr7_4:55140641-55140660 Msa1163770:CDS 45.0%
AAGGAGTTCACAGGGAAAGA+TGG + chr7_4:55140660-55140679 Msa1163770:CDS 45.0%
CATGGGAACCAAATACTCAG+GGG + chr7_4:55141053-55141072 Msa1163770:CDS 45.0%
AACTGCTTCCCCTGAGTATT+TGG - chr7_4:55141064-55141083 None:intergenic 45.0%
GAGCGGAAGTTATCAGTACA+TGG + chr7_4:55141109-55141128 Msa1163770:CDS 45.0%
!! CCAGTTGCAAAAGTGCTGTA+TGG - chr7_4:55141229-55141248 None:intergenic 45.0%
! CCATACAGCACTTTTGCAAC+TGG + chr7_4:55141226-55141245 Msa1163770:CDS 45.0%
GCAATCACTTGGATTCGTTG+TGG + chr7_4:55141248-55141267 Msa1163770:CDS 45.0%
TCTCTTGAAGCTGCATCATG+AGG - chr7_4:55141334-55141353 None:intergenic 45.0%
GGGTTCATTCTGTGTCAAGT+TGG - chr7_4:55141416-55141435 None:intergenic 45.0%
CTAAAGCTCTCCCTAAGGAT+GGG - chr7_4:55141511-55141530 None:intergenic 45.0%
ACTAAAGCTCTCCCTAAGGA+TGG - chr7_4:55141512-55141531 None:intergenic 45.0%
! GTTTTCTGATAGAGGGTCAG+AGG + chr7_4:55141675-55141694 Msa1163770:CDS 45.0%
ATGACAGATGACTTAGAGGC+AGG + chr7_4:55141760-55141779 Msa1163770:CDS 45.0%
TACTCAAAAGCTAGCAGTGC+TGG - chr7_4:55141848-55141867 None:intergenic 45.0%
AGAGAGGGACAATCATGACT+TGG - chr7_4:55141943-55141962 None:intergenic 45.0%
GGGGTCCTTACATCTGAAAA+TGG - chr7_4:55142081-55142100 None:intergenic 45.0%
GTTCGGAAGGAGATGAGCAT+AGG - chr7_4:55135834-55135853 None:intergenic 50.0%
TCAACGCCAAAGTCCCAAAG+GGG - chr7_4:55136785-55136804 None:intergenic 50.0%
GTCAACGCCAAAGTCCCAAA+GGG - chr7_4:55136786-55136805 None:intergenic 50.0%
TGTCAACGCCAAAGTCCCAA+AGG - chr7_4:55136787-55136806 None:intergenic 50.0%
!! CCGTTTTGGTCTTTGGGGAA+TGG + chr7_4:55137123-55137142 Msa1163770:five_prime_UTR 50.0%
!! CTAAAAGCACCGGAACCACT+TGG - chr7_4:55137198-55137217 None:intergenic 50.0%
GGGCTCCGTAATGCAAAATG+TGG + chr7_4:55137531-55137550 Msa1163770:CDS 50.0%
GGGATGGATGCTGTTGAATC+TGG + chr7_4:55137552-55137571 Msa1163770:CDS 50.0%
AGTCATGAGACTGATGCGGA+AGG + chr7_4:55137983-55138002 Msa1163770:CDS 50.0%
TCACAATGGTTTCCAGGTGC+TGG + chr7_4:55138056-55138075 Msa1163770:CDS 50.0%
CTTCGAGATGATGCTGTGCT+TGG - chr7_4:55138791-55138810 None:intergenic 50.0%
GCACAGCATCATCTCGAAGA+TGG + chr7_4:55138792-55138811 Msa1163770:CDS 50.0%
! GGGCCTCCATCAAAGGTTTT+TGG - chr7_4:55139049-55139068 None:intergenic 50.0%
TCGACCATCTCTTCAGGCAT+CGG + chr7_4:55139622-55139641 Msa1163770:CDS 50.0%
CAGAATTGCAGCAAAGCCAC+CGG - chr7_4:55139739-55139758 None:intergenic 50.0%
!! CTTCTGGTCTTAGATCCCGA+GGG + chr7_4:55139972-55139991 Msa1163770:CDS 50.0%
TCTTTGCCACGCCATCTCTT+TGG - chr7_4:55140035-55140054 None:intergenic 50.0%
! ATGTATTGATCGGACACCCC+AGG - chr7_4:55140109-55140128 None:intergenic 50.0%
!! AAGGTGTTGGGCATGTTTGC+AGG + chr7_4:55140432-55140451 Msa1163770:CDS 50.0%
GGCATGTTTGCAGGTTAGCA+TGG + chr7_4:55140441-55140460 Msa1163770:intron 50.0%
TGAACTCCTTCTGCTACGAG+AGG - chr7_4:55140650-55140669 None:intergenic 50.0%
TCGTAGCAGAAGGAGTTCAC+AGG + chr7_4:55140651-55140670 Msa1163770:CDS 50.0%
CGTAGCAGAAGGAGTTCACA+GGG + chr7_4:55140652-55140671 Msa1163770:CDS 50.0%
CATCTTCCCCTCCTAGAATG+TGG + chr7_4:55141143-55141162 Msa1163770:CDS 50.0%
TTCCCCTCCTAGAATGTGGA+GGG + chr7_4:55141147-55141166 Msa1163770:CDS 50.0%
! TACCCCTCCACATTCTAGGA+GGG - chr7_4:55141153-55141172 None:intergenic 50.0%
TCTTCATCCCCTGCCGTATT+GGG - chr7_4:55141178-55141197 None:intergenic 50.0%
CAGGGGATGAAGACAGAAAC+AGG + chr7_4:55141185-55141204 Msa1163770:CDS 50.0%
AGTGCTGTATGGCATTTCCC+TGG - chr7_4:55141218-55141237 None:intergenic 50.0%
!! GGAAGGCATCGAATAGTCTC+TGG - chr7_4:55141395-55141414 None:intergenic 50.0%
ATCGGGCTGCATCTCAACTT+GGG + chr7_4:55141470-55141489 Msa1163770:CDS 50.0%
CTCATCAGCTCCCATCCTTA+GGG + chr7_4:55141498-55141517 Msa1163770:CDS 50.0%
CCTGACTAAAGCTCTCCCTA+AGG - chr7_4:55141516-55141535 None:intergenic 50.0%
! CCTTAGGGAGAGCTTTAGTC+AGG + chr7_4:55141513-55141532 Msa1163770:CDS 50.0%
TTCTAGCCCACCAATGGCTT+CGG - chr7_4:55141570-55141589 None:intergenic 50.0%
AGGACCCCAGCAAAATAGTC+TGG + chr7_4:55142093-55142112 Msa1163770:three_prime_UTR 50.0%
TTAGGTTCAGCTCGCCCCTT+TGG + chr7_4:55136768-55136787 Msa1163770:intron 55.0%
TAGGTTCAGCTCGCCCCTTT+GGG + chr7_4:55136769-55136788 Msa1163770:intron 55.0%
GGCGCGTCATCTTTGACTAG+AGG + chr7_4:55137240-55137259 Msa1163770:CDS 55.0%
TACGGAAGGATCCCAAGTCC+AGG + chr7_4:55137303-55137322 Msa1163770:CDS 55.0%
GGCTCTCACTTCCTGGACTT+GGG - chr7_4:55137317-55137336 None:intergenic 55.0%
TCTGAAGGGCTCTCACTTCC+TGG - chr7_4:55137324-55137343 None:intergenic 55.0%
! CACTGATGGGCCTCCATCAA+AGG - chr7_4:55139056-55139075 None:intergenic 55.0%
CTTTGATGGAGGCCCATCAG+TGG + chr7_4:55139054-55139073 Msa1163770:intron 55.0%
GCTCATCTGCAATTGCAGCC+CGG - chr7_4:55139953-55139972 None:intergenic 55.0%
!! GCTTCTGGTCTTAGATCCCG+AGG + chr7_4:55139971-55139990 Msa1163770:CDS 55.0%
CTTCCCCTCCTAGAATGTGG+AGG + chr7_4:55141146-55141165 Msa1163770:CDS 55.0%
TCCCCTCCTAGAATGTGGAG+GGG + chr7_4:55141148-55141167 Msa1163770:CDS 55.0%
! ACCCCTCCACATTCTAGGAG+GGG - chr7_4:55141152-55141171 None:intergenic 55.0%
CTACCCCTCCACATTCTAGG+AGG - chr7_4:55141154-55141173 None:intergenic 55.0%
GGACTACCCCTCCACATTCT+AGG - chr7_4:55141157-55141176 None:intergenic 55.0%
GTGGAGGGGTAGTCCCAATA+CGG + chr7_4:55141162-55141181 Msa1163770:CDS 55.0%
GTCTTCATCCCCTGCCGTAT+TGG - chr7_4:55141179-55141198 None:intergenic 55.0%
GATCGGGCTGCATCTCAACT+TGG + chr7_4:55141469-55141488 Msa1163770:CDS 55.0%
TCGGGCTGCATCTCAACTTG+GGG + chr7_4:55141471-55141490 Msa1163770:CDS 55.0%
CCTAAGGATGGGAGCTGATG+AGG - chr7_4:55141500-55141519 None:intergenic 55.0%
CCTCATCAGCTCCCATCCTT+AGG + chr7_4:55141497-55141516 Msa1163770:CDS 55.0%
TCTAGCCCACCAATGGCTTC+GGG - chr7_4:55141569-55141588 None:intergenic 55.0%
GACGACTTCTAGCCCACCAA+TGG - chr7_4:55141576-55141595 None:intergenic 55.0%
!! GGTGGGCTAGAAGTCGTCTA+CGG + chr7_4:55141578-55141597 Msa1163770:CDS 55.0%
GCTAGAAGTCGTCTACGGAG+TGG + chr7_4:55141583-55141602 Msa1163770:CDS 55.0%
TCTACGGAGTGGACAAGCTC+AGG + chr7_4:55141594-55141613 Msa1163770:CDS 55.0%
!! AGCTCGCCCCTTTGGGACTT+TGG + chr7_4:55136776-55136795 Msa1163770:five_prime_UTR 60.0%
GGGCTCTCACTTCCTGGACT+TGG - chr7_4:55137318-55137337 None:intergenic 60.0%
TGAACTTTCGGGCCAGCACC+TGG - chr7_4:55138071-55138090 None:intergenic 60.0%
GACACCCCAGGCAGAATACC+TGG - chr7_4:55140097-55140116 None:intergenic 60.0%
AGGGGTAGTCCCAATACGGC+AGG + chr7_4:55141166-55141185 Msa1163770:CDS 60.0%
GGGGTAGTCCCAATACGGCA+GGG + chr7_4:55141167-55141186 Msa1163770:CDS 60.0%
GGGTAGTCCCAATACGGCAG+GGG + chr7_4:55141168-55141187 Msa1163770:CDS 60.0%
!! CAATGGCTTCGGGTTGCGTG+GGG - chr7_4:55141559-55141578 None:intergenic 60.0%
!! CCAATGGCTTCGGGTTGCGT+GGG - chr7_4:55141560-55141579 None:intergenic 60.0%
!! ACCAATGGCTTCGGGTTGCG+TGG - chr7_4:55141561-55141580 None:intergenic 60.0%
ACGCAACCCGAAGCCATTGG+TGG + chr7_4:55141560-55141579 Msa1163770:CDS 60.0%
CGCAACCCGAAGCCATTGGT+GGG + chr7_4:55141561-55141580 Msa1163770:CDS 60.0%
CCCACGCAACCCGAAGCCAT+TGG + chr7_4:55141557-55141576 Msa1163770:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55135777 55142116 55135777 ID=Msa1163770;Name=Msa1163770
chr7_4 mRNA 55135777 55142116 55135777 ID=Msa1163770-mRNA-1;Parent=Msa1163770;Name=Msa1163770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=415|1|1|1|0.8|0.72|11|252|865
chr7_4 exon 55135777 55136054 55135777 ID=Msa1163770-mRNA-1:exon:16086;Parent=Msa1163770-mRNA-1
chr7_4 exon 55136772 55136835 55136772 ID=Msa1163770-mRNA-1:exon:16087;Parent=Msa1163770-mRNA-1
chr7_4 exon 55137110 55137757 55137110 ID=Msa1163770-mRNA-1:exon:16088;Parent=Msa1163770-mRNA-1
chr7_4 exon 55137863 55138183 55137863 ID=Msa1163770-mRNA-1:exon:16089;Parent=Msa1163770-mRNA-1
chr7_4 exon 55138631 55138853 55138631 ID=Msa1163770-mRNA-1:exon:16090;Parent=Msa1163770-mRNA-1
chr7_4 exon 55139621 55139800 55139621 ID=Msa1163770-mRNA-1:exon:16091;Parent=Msa1163770-mRNA-1
chr7_4 exon 55139891 55140097 55139891 ID=Msa1163770-mRNA-1:exon:16092;Parent=Msa1163770-mRNA-1
chr7_4 exon 55140225 55140302 55140225 ID=Msa1163770-mRNA-1:exon:16093;Parent=Msa1163770-mRNA-1
chr7_4 exon 55140383 55140453 55140383 ID=Msa1163770-mRNA-1:exon:16094;Parent=Msa1163770-mRNA-1
chr7_4 exon 55140588 55140698 55140588 ID=Msa1163770-mRNA-1:exon:16095;Parent=Msa1163770-mRNA-1
chr7_4 exon 55141033 55142116 55141033 ID=Msa1163770-mRNA-1:exon:16096;Parent=Msa1163770-mRNA-1
chr7_4 five_prime_UTR 55135777 55136054 55135777 ID=Msa1163770-mRNA-1:five_prime_utr;Parent=Msa1163770-mRNA-1
chr7_4 five_prime_UTR 55136772 55136835 55136772 ID=Msa1163770-mRNA-1:five_prime_utr;Parent=Msa1163770-mRNA-1
chr7_4 five_prime_UTR 55137110 55137182 55137110 ID=Msa1163770-mRNA-1:five_prime_utr;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55137183 55137757 55137183 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55137863 55138183 55137863 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55138631 55138853 55138631 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55139621 55139800 55139621 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55139891 55140097 55139891 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55140225 55140302 55140225 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55140383 55140453 55140383 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55140588 55140698 55140588 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 CDS 55141033 55141864 55141033 ID=Msa1163770-mRNA-1:cds;Parent=Msa1163770-mRNA-1
chr7_4 three_prime_UTR 55141865 55142116 55141865 ID=Msa1163770-mRNA-1:three_prime_utr;Parent=Msa1163770-mRNA-1
Gene Sequence

>Msa1163770

ATGTTTAGCAGACCAAGTGGTTCCGGTGCTTTTAGTATATTCAAATGGAAACAGAAAGGCGCGTCATCTTTGACTAGAGGTTTACTTCATGATGATTCGCCGGAGATCGAATTGTCTAATTACGGAAGGATCCCAAGTCCAGGAAGTGAGAGCCCTTCAGATTTCCTCAATGGAGAAAGTGTATATGTAGAACCAATTGCTGATTTGGATCTCTTCTTTGAAAGACTTTATGGTTACTACTGTGAGAAAGGGTTATGGTGTATTGTTACAAAGTGGATTGTTGAACTTCTAAGTCTGGGGTTCACCATATGCTTTTCAGGATTTTTTTTACTATATGTTGATTGGAATGGGCTCCGTAATGCAAAATGTGGGATGGATGCTGTTGAATCTGGAATTAAGCCCTGTGATCTTGGCAAAGAAGCTCTTAATCAACACCCTTTAACCCCACTCACACTTACCAAAGCTATTATTGTTGGATACTTGGGGATTTTTTCCTTCTATTGGATGTTTTGTTTCCTGCGATTCTTTGCTCAACTAAAGGATATTCTCGAAATACGCCAGTTTTTCTACAGCAGTCTTCATGTCACTGACAATGAAATTCAAACTATGCCCTGGGCCAAAATTGTTGACAAAGTTGTTCTCGTTCAAAATACTCGGAAACTATGTGTGCTGAAGGATCTTTCTGCCCATGATATAGTCATGAGACTGATGCGGAAGGAGAACTACTTAATTGGAATGCTCAACAAGGGTGTGCTTGCTTTCCCCATTTCACAATGGTTTCCAGGTGCTGGCCCGAAAGTTCAATCTAGTCCTGATGGAGCACAATATCGTTTAGTACTTACCAAGACCCTTGAATGGACTTTAAATTGGTGCATCCTACATAGCATGTTTGATCGGAACTTTTGTGTCAGAAGGGATTTTGTGTCAAATCCAAAGACATTACAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTTTCTCCATTCCTTGTCATATTCATGCTGGCATATCTCTTTCTGAGGCATGCTGAGCAATTTTATAATCACCCAAGCACAGCATCATCTCGAAGATGGTCAAACTTGTCTAGGTGGATTTTTAGGGAATACAATGAGGTCGACCATCTCTTCAGGCATCGGATTAATAACAGTGTATCACATGCTTCTGATTATCTCAAGCAGTTTCCTACACCTATCATATCTATCATTGCAAAATTCATATCTTTTGTATCCGGTGGCTTTGCTGCAATTCTGATCATTATTGCTTTTCTCGAGGAGTCTCTGCTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACTGCTATTAGCCGGGCTGCAATTGCAGATGAGCTTCTGGTCTTAGATCCCGAGGGAACAATATCTATGGTGGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAATTACTGACGTGGTCCGCATTGAATTTGAAACCTTATTCCAGTATACAGCAATGATGTTACTTGAGGAGATGGCTTCAATTTTCCTCACTCCATATTTACTTCTGTTTATTGTCCCAAAGCGAGTTGATGATATCTTGCAGTACATTGCCGATTTCACTGTAAATGTTGAAGGTGTTGGGCATGTTTGCAGTTTTAGCACCTTTGATTTTCAAGAGCATGGAAACTCTCATTATGGTTCCCCATATAATGCCTCTCGTAGCAGAAGGAGTTCACAGGGAAAGATGGAGAAATCATTGTTGAGCTTTCAGAGTAGTTATCCATCATGGGAACCAAATACTCAGGGGAAGCAGTTTTTGCTAAATCTTAGAACATTCAGAGAGCGGAAGTTATCAGTACATGGAAACATACACACATCTTCCCCTCCTAGAATGTGGAGGGGTAGTCCCAATACGGCAGGGGATGAAGACAGAAACAGGTTTATATCCAGGGAAATGCCATACAGCACTTTTGCAACTGGCAATCACTTGGATTCGTTGTGGTTGATTGAAGCCAACCAGAATAATCACCCCTATCTTCTTGATTGGTACTACACAGCTCGACCTCATGATGCAGCTTCAAGAGATGTTCCATTAGAACCATATGGAATAACAGAACGTTATTCCAGAGACTATTCGATGCCTTCCAACTTGACACAGAATGAACCCAACTATGAAGAATACTCAAATGAGTATCACGAGGATCGGGCTGCATCTCAACTTGGGGCTTCCTCATCAGCTCCCATCCTTAGGGAGAGCTTTAGTCAGGAGCAAAACTATAATGAACTTCCCCACGCAACCCGAAGCCATTGGTGGGCTAGAAGTCGTCTACGGAGTGGACAAGCTCAGGCAAGCTTTTACGAGCCTCCAGATTTCAATGACCAAACAACATATAATTATCATGACAAGTTTTCTGATAGAGGGTCAGAGGATCAAGACCAAGAACAACACTTTTACTGGAGAGATCATCACAACAAATTATCTAAAACAACAATGACAGATGACTTAGAGGCAGGAGAATTTAATCTACATTTTGGTGATATTTATAGCAGACCTCCAGAAACTCCCACTATAAATTCCAGCACTGCTAGCTTTTGA

Protein sequence

>Msa1163770

MFSRPSGSGAFSIFKWKQKGASSLTRGLLHDDSPEIELSNYGRIPSPGSESPSDFLNGESVYVEPIADLDLFFERLYGYYCEKGLWCIVTKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLGKEALNQHPLTPLTLTKAIIVGYLGIFSFYWMFCFLRFFAQLKDILEIRQFFYSSLHVTDNEIQTMPWAKIVDKVVLVQNTRKLCVLKDLSAHDIVMRLMRKENYLIGMLNKGVLAFPISQWFPGAGPKVQSSPDGAQYRLVLTKTLEWTLNWCILHSMFDRNFCVRRDFVSNPKTLQKRLMVVGLAMLLLSPFLVIFMLAYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREYNEVDHLFRHRINNSVSHASDYLKQFPTPIISIIAKFISFVSGGFAAILIIIAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAIADELLVLDPEGTISMVVQHTHYMPKRWRGKEITDVVRIEFETLFQYTAMMLLEEMASIFLTPYLLLFIVPKRVDDILQYIADFTVNVEGVGHVCSFSTFDFQEHGNSHYGSPYNASRSRRSSQGKMEKSLLSFQSSYPSWEPNTQGKQFLLNLRTFRERKLSVHGNIHTSSPPRMWRGSPNTAGDEDRNRFISREMPYSTFATGNHLDSLWLIEANQNNHPYLLDWYYTARPHDAASRDVPLEPYGITERYSRDYSMPSNLTQNEPNYEEYSNEYHEDRAASQLGASSSAPILRESFSQEQNYNELPHATRSHWWARSRLRSGQAQASFYEPPDFNDQTTYNYHDKFSDRGSEDQDQEQHFYWRDHHNKLSKTTMTDDLEAGEFNLHFGDIYSRPPETPTINSSTASF*