AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163560 MtrunA17_Chr7g0261081 96.536 866 29 1 1 865 1 866 0.0 1753
Msa1163560 MtrunA17_Chr1g0184191 77.560 869 188 6 1 865 1 866 0.0 1395
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163560 AT2G31260.1 65.533 882 265 15 1 862 2 864 0.0 1121

Find 248 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTTTGAAAGACTTTA+TGG 0.100521 7_4:-54782621 Msa1163560:CDS
GAATTTATAGTGGGAGTTTC+TGG 0.112453 7_4:+54778191 None:intergenic
AACTGCTTCCCCTGAGTATT+TGG 0.152672 7_4:+54778953 None:intergenic
AACAACTTTGTCAACAATTT+TGG 0.153920 7_4:+54782110 None:intergenic
GAAGGGTGCTTTCAATTAAA+TGG 0.190594 7_4:-54778110 Msa1163560:three_prime_UTR
GGAGAATTTAATCTACATTT+TGG 0.223978 7_4:-54778233 Msa1163560:CDS
AAAATATCATTGCAGATATT+TGG 0.224381 7_4:-54780138 Msa1163560:intron
CCCTTGAATGGACTTTAAAT+TGG 0.245163 7_4:-54781879 Msa1163560:CDS
TGTAGAACCAATTGCTGATT+TGG 0.253494 7_4:-54782646 Msa1163560:CDS
CCCATTTCACAATGGTTTCC+AGG 0.256603 7_4:-54781964 Msa1163560:CDS
GTAAGTGTGAGTGGGGTTAA+AGG 0.263267 7_4:+54782396 None:intergenic
GTCTTCATCCCCTGCCGTAT+TGG 0.264537 7_4:+54778838 None:intergenic
CGGAAGGAGAACTACTTAAT+TGG 0.265768 7_4:-54782015 Msa1163560:CDS
GTTATTCCATATGGTTCTAA+TGG 0.268064 7_4:+54778656 None:intergenic
CTGCTACGAGAGGCATTATA+TGG 0.271120 7_4:+54779377 None:intergenic
TTCTAGCCCACCAATGGCTT+CGG 0.278161 7_4:+54778447 None:intergenic
CAGGACTAGATTGAACTTTC+GGG 0.278462 7_4:+54781935 None:intergenic
TCTGAAGGGCTCTCACTTCC+TGG 0.293553 7_4:+54782693 None:intergenic
TCTTCATCCCCTGCCGTATT+GGG 0.293680 7_4:+54778839 None:intergenic
GTCCCTCTCTAATTGTTATC+TGG 0.296568 7_4:-54778061 Msa1163560:three_prime_UTR
TCCAGTAAAAGTGTTGTTCT+TGG 0.302842 7_4:+54778309 None:intergenic
CCTCATCAGCTCCCATCCTT+AGG 0.305842 7_4:-54778517 Msa1163560:CDS
TGCAATTGCAGATGAGCTTC+TGG 0.319750 7_4:-54780058 Msa1163560:CDS
GGGCTCTCACTTCCTGGACT+TGG 0.325164 7_4:+54782699 None:intergenic
TCAGGACTAGATTGAACTTT+CGG 0.327003 7_4:+54781934 None:intergenic
GAAGATAGGGGTGATTATTC+TGG 0.327635 7_4:+54778729 None:intergenic
AGCTATTATTGTTGGATACT+TGG 0.328327 7_4:-54782370 Msa1163560:CDS
AGCTCGCCCCTTTGGGACTT+TGG 0.342784 7_4:-54783238 Msa1163560:five_prime_UTR
GGACTACCCCTCCACATTCT+AGG 0.344102 7_4:+54778860 None:intergenic
ACAATAAACAGAAGTAAATA+TGG 0.345471 7_4:+54779741 None:intergenic
AAGGTGTTGGGCATGTTTGC+AGG 0.345877 7_4:-54779582 Msa1163560:intron
GAACCTTGTTATAACCGTTT+TGG 0.346406 7_4:-54782905 Msa1163560:five_prime_UTR
TTTGAGTATTCTTCATAGTT+GGG 0.347898 7_4:+54778581 None:intergenic
ATTTGAGTATTCTTCATAGT+TGG 0.350704 7_4:+54778580 None:intergenic
TAACGTTCTGTTATTCCATA+TGG 0.351902 7_4:+54778647 None:intergenic
TACTATATGTTGATTGGAAT+GGG 0.357764 7_4:-54782503 Msa1163560:CDS
GATTGTTGAACTTCTAAGTC+TGG 0.359203 7_4:-54782556 Msa1163560:CDS
CTTACCAAAGCTATTATTGT+TGG 0.359747 7_4:-54782378 Msa1163560:CDS
TATTTGGTCGGAACTTGTTT+TGG 0.363325 7_4:-54780122 Msa1163560:CDS
TTAGGTTCAGCTCGCCCCTT+TGG 0.364104 7_4:-54783246 Msa1163560:intron
CCTGGAAACCATTGTGAAAT+GGG 0.364513 7_4:+54781964 None:intergenic
CAGAAAAGGCTTATGGTAGT+TGG 0.367074 7_4:-54781337 Msa1163560:CDS
TCTAGCCCACCAATGGCTTC+GGG 0.369897 7_4:+54778448 None:intergenic
TGAATTTGAAACCTTATTCC+AGG 0.371525 7_4:-54779938 Msa1163560:intron
GTTGTTTGGTCATTGAAATC+TGG 0.373910 7_4:+54778380 None:intergenic
ATCACCCCTATCTTCTTGAT+TGG 0.376879 7_4:-54778721 Msa1163560:CDS
TCTTTGCCACGCCATCTCTT+TGG 0.378039 7_4:+54779982 None:intergenic
CAGGCAGAATACCTGGAATA+AGG 0.378454 7_4:+54779927 None:intergenic
TTTGCTGTATATAGATTCAT+TGG 0.378561 7_4:-54778027 Msa1163560:three_prime_UTR
GGAATTAAGCCCTGTGATCT+TGG 0.378592 7_4:-54782441 Msa1163560:CDS
GACATTACAGAAAAGGCTTA+TGG 0.380010 7_4:-54781344 Msa1163560:CDS
AACAATGACAGATGACTTAG+AGG 0.383575 7_4:-54778258 Msa1163560:CDS
TCACAATGGTTTCCAGGTGC+TGG 0.383647 7_4:-54781958 Msa1163560:CDS
TTCAACATTTACAGTGAAAT+CGG 0.386132 7_4:+54779603 None:intergenic
GCTATTATTGTTGGATACTT+GGG 0.389328 7_4:-54782369 Msa1163560:CDS
TTTAGCAGACCAAGTGGTTC+CGG 0.389483 7_4:-54782828 Msa1163560:CDS
TAAAGTCCATTCAAGGGTCT+TGG 0.389766 7_4:+54781885 None:intergenic
GAGCATGGAAACTCTCATTA+TGG 0.390073 7_4:-54779404 Msa1163560:CDS
ACCTGGAAACCATTGTGAAA+TGG 0.391785 7_4:+54781963 None:intergenic
CATGATAATTATATGTTGTT+TGG 0.395237 7_4:+54778366 None:intergenic
TACTCAAAAGCTAGCAGTGC+TGG 0.395445 7_4:+54778169 None:intergenic
GTAGTACCAATCAAGAAGAT+AGG 0.404579 7_4:+54778715 None:intergenic
GATCGGGCTGCATCTCAACT+TGG 0.409523 7_4:-54778545 Msa1163560:CDS
CTTCGAGATGATGCTGTGCT+TGG 0.409901 7_4:+54781226 None:intergenic
AGAAAAGGCTTATGGTAGTT+GGG 0.415599 7_4:-54781336 Msa1163560:CDS
TGAGTATTTGGTTCCCATGA+TGG 0.416490 7_4:+54778965 None:intergenic
GGCTCTCACTTCCTGGACTT+GGG 0.417635 7_4:+54782700 None:intergenic
GGGATGGATGCTGTTGAATC+TGG 0.418976 7_4:-54782462 Msa1163560:CDS
TTCAGAGTAGTTATCCATCA+TGG 0.419889 7_4:-54778979 Msa1163560:CDS
ATCGGGCTGCATCTCAACTT+GGG 0.423241 7_4:-54778544 Msa1163560:CDS
GAAACAAAACATCCAATAGA+AGG 0.424244 7_4:+54782338 None:intergenic
TTACTATATGTTGATTGGAA+TGG 0.426389 7_4:-54782504 Msa1163560:CDS
GGGGTCCTTACATCTGAAAA+TGG 0.427595 7_4:+54777936 None:intergenic
AGCTTCTTTGCCAAGATCAC+AGG 0.430987 7_4:+54782431 None:intergenic
TCCCGAGGGAACAATATCTA+TGG 0.431420 7_4:-54780028 Msa1163560:CDS
TTGGTCTTTGGGGAATGGAT+TGG 0.441248 7_4:-54782886 Msa1163560:five_prime_UTR
ACCAATTTAAAGTCCATTCA+AGG 0.443781 7_4:+54781878 None:intergenic
CAGGGGATGAAGACAGAAAC+AGG 0.448292 7_4:-54778829 Msa1163560:CDS
ATTGTTGAACTTCTAAGTCT+GGG 0.448533 7_4:-54782555 Msa1163560:CDS
AAGGAGTTCACAGGGAAAGA+TGG 0.449011 7_4:-54779354 Msa1163560:CDS
TATGGTTACTACTGTGAGAA+AGG 0.450099 7_4:-54782603 Msa1163560:CDS
CACCATAGATATTGTTCCCT+CGG 0.451923 7_4:+54780026 None:intergenic
TAAGTGTGAGTGGGGTTAAA+GGG 0.453021 7_4:+54782397 None:intergenic
GTATCCAACAATAATAGCTT+TGG 0.455646 7_4:+54782374 None:intergenic
AGCCCTTCAGATTTCCTCAA+TGG 0.457772 7_4:-54782681 Msa1163560:CDS
AAGAGATCCAAATCAGCAAT+TGG 0.458966 7_4:+54782639 None:intergenic
CCTTAGGGAGAGCTTTAGTC+AGG 0.459193 7_4:-54778501 Msa1163560:CDS
GCGATTCTTTGCTCAACTAA+AGG 0.459966 7_4:-54782313 Msa1163560:CDS
TACTTACCAAGACCCTTGAA+TGG 0.460856 7_4:-54781891 Msa1163560:CDS
ACCAATGGCTTCGGGTTGCG+TGG 0.462694 7_4:+54778456 None:intergenic
TGAACTTTCGGGCCAGCACC+TGG 0.463130 7_4:+54781946 None:intergenic
ATCCAAAGACATTACAGAAA+AGG 0.464783 7_4:-54781351 Msa1163560:CDS
AGCAGTGCTGGAATTTATAG+TGG 0.465268 7_4:+54778181 None:intergenic
ACAGAAACAGGTTTATATCC+AGG 0.466653 7_4:-54778817 Msa1163560:CDS
TTTGCAATGATAGATATGAT+AGG 0.466727 7_4:+54780318 None:intergenic
CTCATCAGCTCCCATCCTTA+GGG 0.467690 7_4:-54778516 Msa1163560:CDS
TATAGGTCGACCATCTCTTC+AGG 0.471785 7_4:-54780398 Msa1163560:intron
TGCTACGAGAGGCATTATAT+GGG 0.472893 7_4:+54779378 None:intergenic
TTCGAGATGATGCTGTGCTT+GGG 0.476956 7_4:+54781227 None:intergenic
TTTATTATAAAGTTTGCGTT+CGG 0.478832 7_4:+54784166 None:intergenic
GAACTATAACTGCTATTAGC+CGG 0.481240 7_4:-54780083 Msa1163560:CDS
TCAGTCTCATGACTATATCA+TGG 0.482419 7_4:+54782040 None:intergenic
TAGTACCAATCAAGAAGATA+GGG 0.482945 7_4:+54778716 None:intergenic
ACTGTAAATGTTGAAGGTGT+TGG 0.484395 7_4:-54779595 Msa1163560:CDS
GAGATCGAATTGTCTAATTA+CGG 0.486113 7_4:-54782729 Msa1163560:CDS
TCTACGGAGTGGACAAGCTC+AGG 0.488656 7_4:-54778420 Msa1163560:CDS
GATGTTCCATTAGAACCATA+TGG 0.488783 7_4:-54778662 Msa1163560:CDS
ATGAAATTCAAACTATGCCC+TGG 0.493235 7_4:-54782134 Msa1163560:CDS
CTGTAAATGTTGAAGGTGTT+GGG 0.496375 7_4:-54779594 Msa1163560:CDS
AAACGATATTGTGCTCCATC+AGG 0.497164 7_4:+54781916 None:intergenic
CCAATGGCTTCGGGTTGCGT+GGG 0.500174 7_4:+54778457 None:intergenic
ATGATAGATATGATAGGTGT+AGG 0.502443 7_4:+54780324 None:intergenic
AGGACCCCAGCAAAATAGTC+TGG 0.502578 7_4:-54777921 Msa1163560:three_prime_UTR
AAATGAGTATCACGAGGATC+GGG 0.504809 7_4:-54778561 Msa1163560:CDS
AATGAACCTCAGCTTGATGT+TGG 0.510192 7_4:-54777986 Msa1163560:three_prime_UTR
TAATTAGACAATTCGATCTC+CGG 0.512269 7_4:+54782732 None:intergenic
ATTCCTTGTCATATTCATGC+TGG 0.512407 7_4:-54781290 Msa1163560:CDS
CATATACACTTTCTCCATTG+AGG 0.512728 7_4:+54782667 None:intergenic
GATTTCACTGTAAATGTTGA+AGG 0.515835 7_4:-54779601 Msa1163560:CDS
ATCATGGGAACCAAATACTC+AGG 0.518116 7_4:-54778963 Msa1163560:CDS
ACTACTGTGAGAAAGGGTTA+TGG 0.518635 7_4:-54782596 Msa1163560:CDS
AGGGGTAGTCCCAATACGGC+AGG 0.521250 7_4:-54778848 Msa1163560:CDS
CAAATGAGTATCACGAGGAT+CGG 0.521885 7_4:-54778562 Msa1163560:CDS
AATGATGTTACTTGAGGAGA+TGG 0.523349 7_4:-54779781 Msa1163560:CDS
TATGGTGTATTGTTACAAAG+TGG 0.525702 7_4:-54782578 Msa1163560:CDS
GGAAGGCATCGAATAGTCTC+TGG 0.526974 7_4:+54778622 None:intergenic
ACCATAGATATTGTTCCCTC+GGG 0.527633 7_4:+54780027 None:intergenic
GTCAACGCCAAAGTCCCAAA+GGG 0.527737 7_4:+54783231 None:intergenic
GCACAGCATCATCTCGAAGA+TGG 0.528098 7_4:-54781222 Msa1163560:CDS
ATGGTTACTACTGTGAGAAA+GGG 0.529048 7_4:-54782602 Msa1163560:CDS
TAGCTTTGGTAAGTGTGAGT+GGG 0.530753 7_4:+54782388 None:intergenic
GAAGATGGTCAAACTTGTCT+AGG 0.533585 7_4:-54781207 Msa1163560:CDS
AGCATGAATATGACAAGGAA+TGG 0.534278 7_4:+54781292 None:intergenic
TCATTCTGTGTCAAGTTGGA+AGG 0.535353 7_4:+54778605 None:intergenic
TGTTCACAGACACTAATAGT+AGG 0.535903 7_4:+54782854 None:intergenic
ACTTCTGTTTATTGTCCCAA+AGG 0.536240 7_4:-54779733 Msa1163560:intron
CCTAAGGATGGGAGCTGATG+AGG 0.537502 7_4:+54778517 None:intergenic
TCAGAGTAGTTATCCATCAT+GGG 0.539771 7_4:-54778978 Msa1163560:CDS
CTATTATTGTTGGATACTTG+GGG 0.540123 7_4:-54782368 Msa1163560:CDS
TCCATGCTCTTGAAAATCAA+AGG 0.540684 7_4:+54779418 None:intergenic
AACTATAACTGCTATTAGCC+GGG 0.542388 7_4:-54780082 Msa1163560:CDS
ACTAAAGCTCTCCCTAAGGA+TGG 0.543023 7_4:+54778505 None:intergenic
ATAGGGGTGATTATTCTGGT+TGG 0.544484 7_4:+54778733 None:intergenic
AAAGTTCAATCTAGTCCTGA+TGG 0.544493 7_4:-54781931 Msa1163560:CDS
TAATCCGATGCCTGAAGAGA+TGG 0.549224 7_4:+54780388 None:intergenic
CTCGAGGAGTCTCTGCTAGA+GGG 0.550555 7_4:-54780240 Msa1163560:CDS
TTGTTCTCGTTCAAAATACT+CGG 0.551966 7_4:-54782092 Msa1163560:CDS
TCTCGAGGAGTCTCTGCTAG+AGG 0.552554 7_4:-54780241 Msa1163560:CDS
CTAAAAGCACCGGAACCACT+TGG 0.553267 7_4:+54782819 None:intergenic
GTTCGGAAGGAGATGAGCAT+AGG 0.553415 7_4:+54784183 None:intergenic
GCTTCTTTGCCAAGATCACA+GGG 0.553864 7_4:+54782432 None:intergenic
ACGCAACCCGAAGCCATTGG+TGG 0.555348 7_4:-54778454 Msa1163560:CDS
GTGGAGGGGTAGTCCCAATA+CGG 0.557059 7_4:-54778852 Msa1163560:CDS
GGGTAGTCCCAATACGGCAG+GGG 0.557263 7_4:-54778846 Msa1163560:CDS
TTATAAAGTTTGCGTTCGGA+AGG 0.557342 7_4:+54784170 None:intergenic
ATGACAGATGACTTAGAGGC+AGG 0.558731 7_4:-54778254 Msa1163560:CDS
TGCTGGCATATCTCTTTCTG+AGG 0.559787 7_4:-54781273 Msa1163560:CDS
TCGTAGCAGAAGGAGTTCAC+AGG 0.560103 7_4:-54779363 Msa1163560:CDS
TTAGTTGAGCAAAGAATCGC+AGG 0.562238 7_4:+54782316 None:intergenic
TCGACCATCTCTTCAGGCAT+CGG 0.562994 7_4:-54780392 Msa1163560:CDS
GGCGCGTCATCTTTGACTAG+AGG 0.563241 7_4:-54782774 Msa1163560:CDS
GGGCTCCGTAATGCAAAATG+TGG 0.563493 7_4:-54782483 Msa1163560:CDS
TTGTTGAACTTCTAAGTCTG+GGG 0.566155 7_4:-54782554 Msa1163560:CDS
AGTGCTGTATGGCATTTCCC+TGG 0.566226 7_4:+54778799 None:intergenic
TACGGAAGGATCCCAAGTCC+AGG 0.566589 7_4:-54782711 Msa1163560:CDS
CTTAATTGGAATGCTCAACA+AGG 0.567745 7_4:-54782001 Msa1163560:CDS
TATCATTGCAGATATTTGGT+CGG 0.568586 7_4:-54780134 Msa1163560:intron
CAGAAACAGGTTTATATCCA+GGG 0.569124 7_4:-54778816 Msa1163560:CDS
TTCCCCTCCTAGAATGTGGA+GGG 0.569698 7_4:-54778867 Msa1163560:CDS
ACCGATCAAACATGCTATGT+AGG 0.571866 7_4:+54781851 None:intergenic
CAGAATTGCAGCAAAGCCAC+CGG 0.573817 7_4:+54780278 None:intergenic
TTTGAATATACTAAAAGCAC+CGG 0.574468 7_4:+54782809 None:intergenic
TTTACTTCATGATGATTCGC+CGG 0.574817 7_4:-54782751 Msa1163560:CDS
TCCTACATAGCATGTTTGAT+CGG 0.578136 7_4:-54781852 Msa1163560:intron
CTCCATTGAGGAAATCTGAA+GGG 0.578699 7_4:+54782679 None:intergenic
TCTCCATTGAGGAAATCTGA+AGG 0.580109 7_4:+54782678 None:intergenic
AGCTTTGGTAAGTGTGAGTG+GGG 0.580159 7_4:+54782389 None:intergenic
TTGCTTTCCCCATTTCACAA+TGG 0.581632 7_4:-54781972 Msa1163560:CDS
GGGGTAGTCCCAATACGGCA+GGG 0.581900 7_4:-54778847 Msa1163560:CDS
CCATTCCCCAAAGACCAAAA+CGG 0.583103 7_4:+54782891 None:intergenic
CGCAACCCGAAGCCATTGGT+GGG 0.583279 7_4:-54778453 Msa1163560:CDS
CCAGTTGCAAAAGTGCTGTA+TGG 0.583969 7_4:+54778788 None:intergenic
AGATGATGAAACAGTAGCGA+AGG 0.584404 7_4:+54784006 None:intergenic
GTTTGGTCATTGAAATCTGG+AGG 0.584448 7_4:+54778383 None:intergenic
CACATTATATGCCAAAGAGA+TGG 0.585314 7_4:-54779993 Msa1163560:CDS
GAGCGGAAGTTATCAGTACA+TGG 0.585425 7_4:-54778905 Msa1163560:CDS
TTTCCAGATAACAATTAGAG+AGG 0.586115 7_4:+54778058 None:intergenic
GATGAAACAGTAGCGAAGGA+AGG 0.589559 7_4:+54784010 None:intergenic
TCCTTACATCTGAAAATGGA+AGG 0.591128 7_4:+54777940 None:intergenic
TCGGAAACTATGTGTGCTGA+AGG 0.593556 7_4:-54782073 Msa1163560:CDS
CTAAAGCTCTCCCTAAGGAT+GGG 0.595120 7_4:+54778506 None:intergenic
GGGTTCATTCTGTGTCAAGT+TGG 0.595429 7_4:+54778601 None:intergenic
CCTGACTAAAGCTCTCCCTA+AGG 0.596692 7_4:+54778501 None:intergenic
TGAAATTCAAACTATGCCCT+GGG 0.597379 7_4:-54782133 Msa1163560:CDS
TCGGGCTGCATCTCAACTTG+GGG 0.597814 7_4:-54778543 Msa1163560:CDS
CAGTCTCATGACTATATCAT+GGG 0.597885 7_4:+54782041 None:intergenic
GACGACTTCTAGCCCACCAA+TGG 0.598590 7_4:+54778441 None:intergenic
GGTGGGCTAGAAGTCGTCTA+CGG 0.600262 7_4:-54778436 Msa1163560:CDS
TTCCAGATAACAATTAGAGA+GGG 0.601046 7_4:+54778059 None:intergenic
ATAGCTTTGGTAAGTGTGAG+TGG 0.602946 7_4:+54782387 None:intergenic
CCAATTTAAAGTCCATTCAA+GGG 0.603846 7_4:+54781879 None:intergenic
CCGTAATGCAAAATGTGGGA+TGG 0.604122 7_4:-54782478 Msa1163560:CDS
ACCCCTCCACATTCTAGGAG+GGG 0.604562 7_4:+54778865 None:intergenic
GCTCATCTGCAATTGCAGCC+CGG 0.605056 7_4:+54780064 None:intergenic
TGTCAACGCCAAAGTCCCAA+AGG 0.605903 7_4:+54783230 None:intergenic
TTTATAGTGGGAGTTTCTGG+AGG 0.606997 7_4:+54778194 None:intergenic
CTTCCCCTCCTAGAATGTGG+AGG 0.608862 7_4:-54778868 Msa1163560:CDS
TCATGGGAACCAAATACTCA+GGG 0.611108 7_4:-54778962 Msa1163560:CDS
TAAGTTCCAACATCAAGCTG+AGG 0.612971 7_4:+54777980 None:intergenic
CATCTTCCCCTCCTAGAATG+TGG 0.614729 7_4:-54778871 Msa1163560:CDS
TACCCCTCCACATTCTAGGA+GGG 0.614814 7_4:+54778864 None:intergenic
AGAGAGGGACAATCATGACT+TGG 0.617793 7_4:+54778074 None:intergenic
ACAGAAGTAAATATGGAGTG+AGG 0.618250 7_4:+54779748 None:intergenic
AGATGGAGAAATCATTGTTG+AGG 0.619203 7_4:-54779337 Msa1163560:intron
TACAGCAATGATGTTACTTG+AGG 0.621146 7_4:-54779787 Msa1163560:CDS
TCTCTTGAAGCTGCATCATG+AGG 0.621641 7_4:+54778683 None:intergenic
GCAATCACTTGGATTCGTTG+TGG 0.621682 7_4:-54778766 Msa1163560:CDS
ATATTCAAATGGAAACAGAA+AGG 0.623281 7_4:-54782795 Msa1163560:CDS
CGTAGCAGAAGGAGTTCACA+GGG 0.625758 7_4:-54779362 Msa1163560:CDS
ATCTTAGAACATTCAGAGAG+CGG 0.626044 7_4:-54778922 Msa1163560:CDS
CGAGGGAACAATATCTATGG+TGG 0.626273 7_4:-54780025 Msa1163560:CDS
TCGAATTGTCTAATTACGGA+AGG 0.628393 7_4:-54782725 Msa1163560:CDS
TATATAGATTCATTGGTGTG+AGG 0.629591 7_4:-54778020 Msa1163560:three_prime_UTR
CTACCCCTCCACATTCTAGG+AGG 0.629863 7_4:+54778863 None:intergenic
ATAATGCCTCTCGTAGCAGA+AGG 0.629914 7_4:-54779373 Msa1163560:CDS
GCAGTGCTGGAATTTATAGT+GGG 0.639720 7_4:+54778182 None:intergenic
GCTTCTGGTCTTAGATCCCG+AGG 0.643614 7_4:-54780043 Msa1163560:CDS
AGTCATGAGACTGATGCGGA+AGG 0.646846 7_4:-54782031 Msa1163560:CDS
GATGGTCAAACTTGTCTAGG+TGG 0.647207 7_4:-54781204 Msa1163560:CDS
CTGGAAACCATTGTGAAATG+GGG 0.649696 7_4:+54781965 None:intergenic
TCCCCTCCTAGAATGTGGAG+GGG 0.656107 7_4:-54778866 Msa1163560:CDS
GCTAGAAGTCGTCTACGGAG+TGG 0.667710 7_4:-54778431 Msa1163560:CDS
AGACCAAAACGGTTATAACA+AGG 0.668823 7_4:+54782902 None:intergenic
TATATGCCAAAGAGATGGCG+TGG 0.670967 7_4:-54779988 Msa1163560:CDS
TTAATTGGAATGCTCAACAA+GGG 0.673370 7_4:-54782000 Msa1163560:CDS
ACAATGTTTAGCAGACCAAG+TGG 0.673800 7_4:-54782834 Msa1163560:CDS
TGGCAAAGAAATTACTGACG+TGG 0.676549 7_4:-54779968 Msa1163560:CDS
ATATAGTCATGAGACTGATG+CGG 0.679190 7_4:-54782035 Msa1163560:CDS
GGCTCCGTAATGCAAAATGT+GGG 0.679327 7_4:-54782482 Msa1163560:CDS
AGTACCAATCAAGAAGATAG+GGG 0.679475 7_4:+54778717 None:intergenic
CTTCTGGTCTTAGATCCCGA+GGG 0.679702 7_4:-54780042 Msa1163560:CDS
TGAACTCCTTCTGCTACGAG+AGG 0.680258 7_4:+54779367 None:intergenic
GCTACGAGAGGCATTATATG+GGG 0.685648 7_4:+54779379 None:intergenic
ATGCCAGCATGAATATGACA+AGG 0.687544 7_4:+54781287 None:intergenic
TCAACGCCAAAGTCCCAAAG+GGG 0.699074 7_4:+54783232 None:intergenic
ATAAGGTTTCAAATTCAATG+CGG 0.726994 7_4:+54779944 None:intergenic
ATACTCAAATGAGTATCACG+AGG 0.745566 7_4:-54778567 Msa1163560:CDS
CATGGGAACCAAATACTCAG+GGG 0.758921 7_4:-54778961 Msa1163560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTGGAAAATTTA+TGG - chr7_4:54781314-54781333 Msa1163560:CDS 10.0%
!!! TGATAATTTTTTTTTAGTAT+AGG - chr7_4:54781357-54781376 Msa1163560:CDS 10.0%
!! TGTAAATAAATAACAAATAA+CGG + chr7_4:54782294-54782313 None:intergenic 10.0%
!! TAAAATTCAAAACATATATA+TGG + chr7_4:54782916-54782935 None:intergenic 10.0%
!!! TTTTTTATACTTTTGTGAAA+TGG - chr7_4:54778860-54778879 Msa1163560:CDS 15.0%
!!! TTATTTTTCTGTTGTTTATT+TGG - chr7_4:54779126-54779145 Msa1163560:intron 15.0%
!!! TATTTTTCTGTTGTTTATTT+GGG - chr7_4:54779127-54779146 Msa1163560:intron 15.0%
!! GTAAGATTCTAATATTAATT+TGG - chr7_4:54779218-54779237 Msa1163560:intron 15.0%
!!! TTTTTTTACTATATGTTGAT+TGG - chr7_4:54779648-54779667 Msa1163560:intron 15.0%
!! ACACATTATTAAATATTAAC+AGG + chr7_4:54780392-54780411 None:intergenic 15.0%
!!! CTATTCATGAAAATTTTTAT+TGG - chr7_4:54781303-54781322 Msa1163560:CDS 15.0%
!! ATTTATGGAAATTACAATAA+AGG - chr7_4:54781329-54781348 Msa1163560:CDS 15.0%
!! TATTTATTTACACATAGAAT+AGG - chr7_4:54782302-54782321 Msa1163560:CDS 15.0%
!! CAAAATATTCATAATAGTAA+TGG + chr7_4:54782948-54782967 None:intergenic 15.0%
!!! TCCAAAAAAAATTATTTTAC+TGG + chr7_4:54783103-54783122 None:intergenic 15.0%
!! AATTAAACGAAAATACATAT+AGG + chr7_4:54783135-54783154 None:intergenic 15.0%
!! TTTATTATAAAGTTTGCGTT+CGG + chr7_4:54777994-54778013 None:intergenic 20.0%
!! TCATTGATATTCATATGATA+TGG + chr7_4:54778226-54778245 None:intergenic 20.0%
!! CATATGAATATCAATGATTT+CGG - chr7_4:54778229-54778248 Msa1163560:CDS 20.0%
!!! TAACTGAATTTGTTCTTTTT+TGG - chr7_4:54778531-54778550 Msa1163560:CDS 20.0%
!! TATACAAATACAATGATCTT+TGG - chr7_4:54778588-54778607 Msa1163560:CDS 20.0%
!!! TTGATTATTTTTGAACACTT+AGG - chr7_4:54778807-54778826 Msa1163560:CDS 20.0%
!! ATTTCACAAAATGGTTAAAA+GGG + chr7_4:54780453-54780472 None:intergenic 20.0%
!!! TTTTAACCATTTTGTGAAAT+CGG - chr7_4:54780453-54780472 Msa1163560:intron 20.0%
!! ATAAATTGCATCCTTATATA+AGG + chr7_4:54780529-54780548 None:intergenic 20.0%
!! TTTCAAATTTCATGTTATTC+TGG - chr7_4:54780570-54780589 Msa1163560:intron 20.0%
!! AATTTCATAGTTAGTTGTAT+AGG - chr7_4:54780602-54780621 Msa1163560:intron 20.0%
!!! GTTTATTTTCAGTACATAAT+TGG - chr7_4:54781145-54781164 Msa1163560:intron 20.0%
!!! TTATCAATAACTTGTGTTAT+AGG - chr7_4:54781742-54781761 Msa1163560:intron 20.0%
!!! AAATTCATATCTTTTGTATC+CGG - chr7_4:54781860-54781879 Msa1163560:CDS 20.0%
!! AAAATATCATTGCAGATATT+TGG - chr7_4:54782019-54782038 Msa1163560:CDS 20.0%
!! ACAATAAACAGAAGTAAATA+TGG + chr7_4:54782419-54782438 None:intergenic 20.0%
!! TACTTGGAGATTTATTTATA+TGG - chr7_4:54782456-54782475 Msa1163560:CDS 20.0%
!!! GCCAGTAAAATAATTTTTTT+TGG - chr7_4:54783099-54783118 Msa1163560:intron 20.0%
!! CATGATAATTATATGTTGTT+TGG + chr7_4:54783794-54783813 None:intergenic 20.0%
!! AAACTCTTTTCTTTACTTCA+AGG - chr7_4:54778176-54778195 Msa1163560:CDS 25.0%
! CATATGATATGGAAAAGAAA+GGG + chr7_4:54778215-54778234 None:intergenic 25.0%
! TCATATGATATGGAAAAGAA+AGG + chr7_4:54778216-54778235 None:intergenic 25.0%
! CAACTATCTTAACTATTCAT+TGG + chr7_4:54778681-54778700 None:intergenic 25.0%
! AGTTAAGATAGTTGAAAATG+CGG - chr7_4:54778687-54778706 Msa1163560:CDS 25.0%
!! ACATTTGAAGATGATGTTTT+AGG - chr7_4:54778893-54778912 Msa1163560:CDS 25.0%
!! TTTGAATATACTAAAAGCAC+CGG + chr7_4:54779351-54779370 None:intergenic 25.0%
!! GTGCTTTTAGTATATTCAAA+TGG - chr7_4:54779351-54779370 Msa1163560:CDS 25.0%
! ATATTCAAATGGAAACAGAA+AGG - chr7_4:54779362-54779381 Msa1163560:CDS 25.0%
!! AAAAAATCCTGAAAAGCATA+TGG + chr7_4:54779633-54779652 None:intergenic 25.0%
!! TTACTATATGTTGATTGGAA+TGG - chr7_4:54779653-54779672 Msa1163560:intron 25.0%
!! TACTATATGTTGATTGGAAT+GGG - chr7_4:54779654-54779673 Msa1163560:intron 25.0%
!! AACAACTTTGTCAACAATTT+TGG + chr7_4:54780050-54780069 None:intergenic 25.0%
!! GTATGAATTATTGTCTTTTG+AGG - chr7_4:54780410-54780429 Msa1163560:intron 25.0%
! AAATGGTTAAAAGGGAAAAT+TGG + chr7_4:54780445-54780464 None:intergenic 25.0%
! GATTTCACAAAATGGTTAAA+AGG + chr7_4:54780454-54780473 None:intergenic 25.0%
! ATAAGGATGCAATTTATATC+TGG - chr7_4:54780532-54780551 Msa1163560:intron 25.0%
!! AGGTATCATATTCATTTTCT+TGG - chr7_4:54780995-54781014 Msa1163560:intron 25.0%
! AACTGAATAAAATATGCACT+TGG + chr7_4:54781128-54781147 None:intergenic 25.0%
! AACTTCAAATCTTTCTTTCA+TGG + chr7_4:54781275-54781294 None:intergenic 25.0%
!!! CTTGCATATTTTTTTGAAAC+AGG - chr7_4:54781477-54781496 Msa1163560:intron 25.0%
! TGTAACATAGTTATTTGACT+TGG - chr7_4:54781535-54781554 Msa1163560:intron 25.0%
!! TTTTCAAACAACATAAATGC+TGG + chr7_4:54781561-54781580 None:intergenic 25.0%
!! TAATTCTAAAAACGATAACC+AGG + chr7_4:54781687-54781706 None:intergenic 25.0%
! TTTGCAATGATAGATATGAT+AGG + chr7_4:54781842-54781861 None:intergenic 25.0%
! ATAAGGTTTCAAATTCAATG+CGG + chr7_4:54782216-54782235 None:intergenic 25.0%
!! CATAATGTGAATGTATTGAT+CGG + chr7_4:54782262-54782281 None:intergenic 25.0%
! TTCAACATTTACAGTGAAAT+CGG + chr7_4:54782557-54782576 None:intergenic 25.0%
! CTCATAAGACAAAATTCATT+AGG - chr7_4:54782867-54782886 Msa1163560:five_prime_UTR 25.0%
! TAAGACAAAATTCATTAGGA+AGG - chr7_4:54782871-54782890 Msa1163560:five_prime_UTR 25.0%
!!! GTGCATGCTTTTTAATTTTT+TGG - chr7_4:54782980-54782999 Msa1163560:intron 25.0%
! TTTGAGTATTCTTCATAGTT+GGG + chr7_4:54783579-54783598 None:intergenic 25.0%
! ATTTGAGTATTCTTCATAGT+TGG + chr7_4:54783580-54783599 None:intergenic 25.0%
!! GGAGAATTTAATCTACATTT+TGG - chr7_4:54783924-54783943 Msa1163560:intron 25.0%
!! TTTGCTGTATATAGATTCAT+TGG - chr7_4:54784130-54784149 Msa1163560:five_prime_UTR 25.0%
!! GATTTTTGTTTATAGTTGCG+TGG + chr7_4:54778085-54778104 None:intergenic 30.0%
! GTTTGCATATTTTGTAACGT+TGG - chr7_4:54778386-54778405 Msa1163560:CDS 30.0%
!!! CTTTTTTGGTCTGACATTTA+TGG - chr7_4:54778545-54778564 Msa1163560:CDS 30.0%
TGGAGCAATTATCATAACAT+GGG + chr7_4:54778739-54778758 None:intergenic 30.0%
ATGGAGCAATTATCATAACA+TGG + chr7_4:54778740-54778759 None:intergenic 30.0%
TGTTATGATAATTGCTCCAT+TGG - chr7_4:54778740-54778759 Msa1163560:CDS 30.0%
GTTATGATAATTGCTCCATT+GGG - chr7_4:54778741-54778760 Msa1163560:CDS 30.0%
ACAAATACACATTGCCAATT+TGG + chr7_4:54778772-54778791 None:intergenic 30.0%
AAAGTTTGAGAGAGAAAGTT+AGG + chr7_4:54778837-54778856 None:intergenic 30.0%
GAAAAATAAAAGCGAAGACA+AGG + chr7_4:54779115-54779134 None:intergenic 30.0%
TTGCAAATTGCATTCCTATT+TGG + chr7_4:54779156-54779175 None:intergenic 30.0%
!! TTATAACCGTTTTGGTCTTT+GGG - chr7_4:54779260-54779279 Msa1163560:intron 30.0%
TAATTAGACAATTCGATCTC+CGG + chr7_4:54779428-54779447 None:intergenic 30.0%
GAGATCGAATTGTCTAATTA+CGG - chr7_4:54779428-54779447 Msa1163560:CDS 30.0%
! CTCTTCTTTGAAAGACTTTA+TGG - chr7_4:54779536-54779555 Msa1163560:intron 30.0%
TATGGTGTATTGTTACAAAG+TGG - chr7_4:54779579-54779598 Msa1163560:intron 30.0%
ATTGTTGAACTTCTAAGTCT+GGG - chr7_4:54779602-54779621 Msa1163560:CDS 30.0%
CTTACCAAAGCTATTATTGT+TGG - chr7_4:54779779-54779798 Msa1163560:CDS 30.0%
GTATCCAACAATAATAGCTT+TGG + chr7_4:54779786-54779805 None:intergenic 30.0%
AGCTATTATTGTTGGATACT+TGG - chr7_4:54779787-54779806 Msa1163560:CDS 30.0%
GCTATTATTGTTGGATACTT+GGG - chr7_4:54779788-54779807 Msa1163560:CDS 30.0%
CTATTATTGTTGGATACTTG+GGG - chr7_4:54779789-54779808 Msa1163560:CDS 30.0%
GAAACAAAACATCCAATAGA+AGG + chr7_4:54779822-54779841 None:intergenic 30.0%
TTGTTCTCGTTCAAAATACT+CGG - chr7_4:54780065-54780084 Msa1163560:CDS 30.0%
TTAATTGGAATGCTCAACAA+GGG - chr7_4:54780157-54780176 Msa1163560:intron 30.0%
! CCAATTTAAAGTCCATTCAA+GGG + chr7_4:54780281-54780300 None:intergenic 30.0%
! ACCAATTTAAAGTCCATTCA+AGG + chr7_4:54780282-54780301 None:intergenic 30.0%
! AACAAACCGATTTCACAAAA+TGG + chr7_4:54780462-54780481 None:intergenic 30.0%
TTGTTTGTTTGAAGGATAGA+AGG - chr7_4:54780481-54780500 Msa1163560:intron 30.0%
ATAGTTAGTTGTATAGGAGT+TGG - chr7_4:54780608-54780627 Msa1163560:intron 30.0%
GATTGACATATGTTGTGATT+CGG - chr7_4:54780671-54780690 Msa1163560:intron 30.0%
ATCCAAAGACATTACAGAAA+AGG - chr7_4:54780806-54780825 Msa1163560:intron 30.0%
!! GATTTTTAGGGAATACAATG+AGG - chr7_4:54780975-54780994 Msa1163560:intron 30.0%
GAAGAGAAAATGGAAGAAAA+TGG + chr7_4:54781025-54781044 None:intergenic 30.0%
CAACAAAAGAGAAGAGAAAA+TGG + chr7_4:54781035-54781054 None:intergenic 30.0%
!! ACATAGTATAGAAGTGTCTA+TGG + chr7_4:54781099-54781118 None:intergenic 30.0%
AGTTATCCAAAAACCTTTGA+TGG - chr7_4:54781183-54781202 Msa1163560:CDS 30.0%
TTATATACACAACCACTGAT+GGG + chr7_4:54781212-54781231 None:intergenic 30.0%
ATTATATACACAACCACTGA+TGG + chr7_4:54781213-54781232 None:intergenic 30.0%
CATGCATTCTCTGTTAATAT+CGG - chr7_4:54781238-54781257 Msa1163560:CDS 30.0%
ATTTATGAGTGACCACATTA+TGG - chr7_4:54781420-54781439 Msa1163560:intron 30.0%
ACTAGAATAACACCATAATG+TGG + chr7_4:54781435-54781454 None:intergenic 30.0%
! GCTATTGTTTGGTAGTATAA+AGG + chr7_4:54781587-54781606 None:intergenic 30.0%
CACAAGTTATTGATAAGCTT+TGG + chr7_4:54781738-54781757 None:intergenic 30.0%
ATGATAGATATGATAGGTGT+AGG + chr7_4:54781836-54781855 None:intergenic 30.0%
ATCAACAGAAGTTCATTACA+TGG + chr7_4:54781943-54781962 None:intergenic 30.0%
TTACTGAGTTCATAATGTCA+TGG - chr7_4:54781965-54781984 Msa1163560:CDS 30.0%
TATCATTGCAGATATTTGGT+CGG - chr7_4:54782023-54782042 Msa1163560:CDS 30.0%
! TGAATTTGAAACCTTATTCC+AGG - chr7_4:54782219-54782238 Msa1163560:intron 30.0%
! TGCTCATGTTTTTCTTTGTA+TGG - chr7_4:54782340-54782359 Msa1163560:CDS 30.0%
GATTTCACTGTAAATGTTGA+AGG - chr7_4:54782556-54782575 Msa1163560:CDS 30.0%
! ATATTTTCTGCCATAAGCTA+TGG + chr7_4:54782683-54782702 None:intergenic 30.0%
ACAATGTTTATACTCTCAGT+TGG - chr7_4:54783019-54783038 Msa1163560:intron 30.0%
TAGTACCAATCAAGAAGATA+GGG + chr7_4:54783444-54783463 None:intergenic 30.0%
!! GTTATTCCATATGGTTCTAA+TGG + chr7_4:54783504-54783523 None:intergenic 30.0%
TAACGTTCTGTTATTCCATA+TGG + chr7_4:54783513-54783532 None:intergenic 30.0%
! ATGACAAGTTTTCTGATAGA+GGG - chr7_4:54783811-54783830 Msa1163560:intron 30.0%
AAACAAAAAATGTGGGAAAG+GGG + chr7_4:54784026-54784045 None:intergenic 30.0%
CAAACAAAAAATGTGGGAAA+GGG + chr7_4:54784027-54784046 None:intergenic 30.0%
TTCCAGATAACAATTAGAGA+GGG + chr7_4:54784101-54784120 None:intergenic 30.0%
TTTCCAGATAACAATTAGAG+AGG + chr7_4:54784102-54784121 None:intergenic 30.0%
TATATAGATTCATTGGTGTG+AGG - chr7_4:54784137-54784156 Msa1163560:five_prime_UTR 30.0%
TTATAAAGTTTGCGTTCGGA+AGG + chr7_4:54777990-54778009 None:intergenic 35.0%
AATTATTATCGTTGTCGACG+AGG + chr7_4:54778429-54778448 None:intergenic 35.0%
! TTTGCACAGAAATTTTGCCT+CGG + chr7_4:54778630-54778649 None:intergenic 35.0%
! ACAACTTTTCTCTCATGATC+AGG - chr7_4:54778957-54778976 Msa1163560:CDS 35.0%
! TTTTCTCTCATGATCAGGTA+TGG - chr7_4:54778962-54778981 Msa1163560:CDS 35.0%
! CAGGTATGGTTTTCATTAAC+CGG - chr7_4:54778976-54778995 Msa1163560:CDS 35.0%
TCATTAACCGGTAGAAATCT+TGG - chr7_4:54778988-54779007 Msa1163560:intron 35.0%
ATCTAGACCAAGATTTCTAC+CGG + chr7_4:54778998-54779017 None:intergenic 35.0%
!! GTTTATTTGGGTTGCCAAAT+AGG - chr7_4:54779139-54779158 Msa1163560:intron 35.0%
!! GAACCTTGTTATAACCGTTT+TGG - chr7_4:54779252-54779271 Msa1163560:intron 35.0%
AGACCAAAACGGTTATAACA+AGG + chr7_4:54779258-54779277 None:intergenic 35.0%
!! GTTATAACCGTTTTGGTCTT+TGG - chr7_4:54779259-54779278 Msa1163560:intron 35.0%
!! TATAACCGTTTTGGTCTTTG+GGG - chr7_4:54779261-54779280 Msa1163560:intron 35.0%
TGTTCACAGACACTAATAGT+AGG + chr7_4:54779306-54779325 None:intergenic 35.0%
TTTACTTCATGATGATTCGC+CGG - chr7_4:54779406-54779425 Msa1163560:CDS 35.0%
TCGAATTGTCTAATTACGGA+AGG - chr7_4:54779432-54779451 Msa1163560:intron 35.0%
CATATACACTTTCTCCATTG+AGG + chr7_4:54779493-54779512 None:intergenic 35.0%
! TGTAGAACCAATTGCTGATT+TGG - chr7_4:54779511-54779530 Msa1163560:intron 35.0%
AAGAGATCCAAATCAGCAAT+TGG + chr7_4:54779521-54779540 None:intergenic 35.0%
TATGGTTACTACTGTGAGAA+AGG - chr7_4:54779554-54779573 Msa1163560:intron 35.0%
ATGGTTACTACTGTGAGAAA+GGG - chr7_4:54779555-54779574 Msa1163560:intron 35.0%
GATTGTTGAACTTCTAAGTC+TGG - chr7_4:54779601-54779620 Msa1163560:CDS 35.0%
TTGTTGAACTTCTAAGTCTG+GGG - chr7_4:54779603-54779622 Msa1163560:CDS 35.0%
!!! TGGGGATTTTTTCCTTCTAT+TGG - chr7_4:54779807-54779826 Msa1163560:intron 35.0%
CTAAAATGCATTGAAGCAGT+TGG - chr7_4:54779930-54779949 Msa1163560:intron 35.0%
AGACAAAAACATGTGAACTG+TGG + chr7_4:54779964-54779983 None:intergenic 35.0%
ATGAAATTCAAACTATGCCC+TGG - chr7_4:54780023-54780042 Msa1163560:CDS 35.0%
TGAAATTCAAACTATGCCCT+GGG - chr7_4:54780024-54780043 Msa1163560:CDS 35.0%
CAGTCTCATGACTATATCAT+GGG + chr7_4:54780119-54780138 None:intergenic 35.0%
TCAGTCTCATGACTATATCA+TGG + chr7_4:54780120-54780139 None:intergenic 35.0%
ATATAGTCATGAGACTGATG+CGG - chr7_4:54780122-54780141 Msa1163560:CDS 35.0%
CTTAATTGGAATGCTCAACA+AGG - chr7_4:54780156-54780175 Msa1163560:intron 35.0%
TCAGGACTAGATTGAACTTT+CGG + chr7_4:54780226-54780245 None:intergenic 35.0%
AAAGTTCAATCTAGTCCTGA+TGG - chr7_4:54780226-54780245 Msa1163560:intron 35.0%
! CCCTTGAATGGACTTTAAAT+TGG - chr7_4:54780278-54780297 Msa1163560:CDS 35.0%
TCCTACATAGCATGTTTGAT+CGG - chr7_4:54780305-54780324 Msa1163560:CDS 35.0%
CACTCTGATTGTACAACTAA+AGG + chr7_4:54780353-54780372 None:intergenic 35.0%
! CGGTTTGTTTGTTTGTTTGA+AGG - chr7_4:54780473-54780492 Msa1163560:intron 35.0%
! CATCCTTATATAAGGTACCA+TGG + chr7_4:54780521-54780540 None:intergenic 35.0%
GTAGCAAAAGTCATGTTCAA+AGG + chr7_4:54780752-54780771 None:intergenic 35.0%
! TTGAACATGACTTTTGCTAC+AGG - chr7_4:54780752-54780771 Msa1163560:intron 35.0%
! AGCCTTTTCTGTAATGTCTT+TGG + chr7_4:54780811-54780830 None:intergenic 35.0%
GACATTACAGAAAAGGCTTA+TGG - chr7_4:54780813-54780832 Msa1163560:intron 35.0%
AGAAAAGGCTTATGGTAGTT+GGG - chr7_4:54780821-54780840 Msa1163560:intron 35.0%
AGCATGAATATGACAAGGAA+TGG + chr7_4:54780868-54780887 None:intergenic 35.0%
ATTCCTTGTCATATTCATGC+TGG - chr7_4:54780867-54780886 Msa1163560:intron 35.0%
!! ACTTGTCTAGGTGGATTTTT+AGG - chr7_4:54780962-54780981 Msa1163560:intron 35.0%
!! CTTGTCTAGGTGGATTTTTA+GGG - chr7_4:54780963-54780982 Msa1163560:intron 35.0%
!!! CTTCTCTTTTGTTGCTTTCA+TGG - chr7_4:54781041-54781060 Msa1163560:intron 35.0%
TATCCAAAAACCTTTGATGG+AGG - chr7_4:54781186-54781205 Msa1163560:CDS 35.0%
ATTAACAGAGAATGCATGGA+TGG + chr7_4:54781236-54781255 None:intergenic 35.0%
CGATATTAACAGAGAATGCA+TGG + chr7_4:54781240-54781259 None:intergenic 35.0%
TTCTAGTCACCTAGCATTAA+CGG - chr7_4:54781448-54781467 Msa1163560:intron 35.0%
AAGAATAAGCCGTTAATGCT+AGG + chr7_4:54781460-54781479 None:intergenic 35.0%
AATGTCATATGCAACCTACA+TGG + chr7_4:54781609-54781628 None:intergenic 35.0%
! TTCATATCTTTTGTATCCGG+TGG - chr7_4:54781863-54781882 Msa1163560:CDS 35.0%
!! TATTTGGTCGGAACTTGTTT+TGG - chr7_4:54782035-54782054 Msa1163560:CDS 35.0%
!!! TTTTGGTATGCTGCTGTTTT+TGG - chr7_4:54782052-54782071 Msa1163560:CDS 35.0%
GAACTATAACTGCTATTAGC+CGG - chr7_4:54782074-54782093 Msa1163560:CDS 35.0%
AACTATAACTGCTATTAGCC+GGG - chr7_4:54782075-54782094 Msa1163560:CDS 35.0%
CACATTATATGCCAAAGAGA+TGG - chr7_4:54782164-54782183 Msa1163560:intron 35.0%
AAGAAAAACATGAGCACGAA+AGG + chr7_4:54782336-54782355 None:intergenic 35.0%
! TACAGCAATGATGTTACTTG+AGG - chr7_4:54782370-54782389 Msa1163560:CDS 35.0%
! AATGATGTTACTTGAGGAGA+TGG - chr7_4:54782376-54782395 Msa1163560:CDS 35.0%
ACAGAAGTAAATATGGAGTG+AGG + chr7_4:54782412-54782431 None:intergenic 35.0%
ACTTCTGTTTATTGTCCCAA+AGG - chr7_4:54782424-54782443 Msa1163560:CDS 35.0%
CAAGTACGAAAATGACCTTT+GGG + chr7_4:54782442-54782461 None:intergenic 35.0%
CTGTGAAATGCAGTATACTT+GGG + chr7_4:54782482-54782501 None:intergenic 35.0%
ACTGTGAAATGCAGTATACT+TGG + chr7_4:54782483-54782502 None:intergenic 35.0%
! ACTGTAAATGTTGAAGGTGT+TGG - chr7_4:54782562-54782581 Msa1163560:CDS 35.0%
!! CTGTAAATGTTGAAGGTGTT+GGG - chr7_4:54782563-54782582 Msa1163560:CDS 35.0%
GTACATCTGTAACATTCTCT+AGG - chr7_4:54782634-54782653 Msa1163560:CDS 35.0%
TGTCTCAATTCCATAGCTTA+TGG - chr7_4:54782670-54782689 Msa1163560:CDS 35.0%
!! ACCTTTGATTTTCAAGAGCA+TGG - chr7_4:54782738-54782757 Msa1163560:CDS 35.0%
TCCATGCTCTTGAAAATCAA+AGG + chr7_4:54782742-54782761 None:intergenic 35.0%
AGATGGAGAAATCATTGTTG+AGG - chr7_4:54782820-54782839 Msa1163560:CDS 35.0%
GAGAAATCATTGTTGAGGTA+TGG - chr7_4:54782825-54782844 Msa1163560:CDS 35.0%
TCTGAGAAAAGAGTTGACTA+TGG + chr7_4:54783071-54783090 None:intergenic 35.0%
TTCAGAGTAGTTATCCATCA+TGG - chr7_4:54783178-54783197 Msa1163560:intron 35.0%
TCAGAGTAGTTATCCATCAT+GGG - chr7_4:54783179-54783198 Msa1163560:intron 35.0%
ATCTTAGAACATTCAGAGAG+CGG - chr7_4:54783235-54783254 Msa1163560:five_prime_UTR 35.0%
ACAGAAACAGGTTTATATCC+AGG - chr7_4:54783340-54783359 Msa1163560:intron 35.0%
CAGAAACAGGTTTATATCCA+GGG - chr7_4:54783341-54783360 Msa1163560:intron 35.0%
AGTACCAATCAAGAAGATAG+GGG + chr7_4:54783443-54783462 None:intergenic 35.0%
GTAGTACCAATCAAGAAGAT+AGG + chr7_4:54783445-54783464 None:intergenic 35.0%
GATGTTCCATTAGAACCATA+TGG - chr7_4:54783495-54783514 Msa1163560:intron 35.0%
ATACTCAAATGAGTATCACG+AGG - chr7_4:54783590-54783609 Msa1163560:intron 35.0%
GTTGTTTGGTCATTGAAATC+TGG + chr7_4:54783780-54783799 None:intergenic 35.0%
! CATGACAAGTTTTCTGATAG+AGG - chr7_4:54783810-54783829 Msa1163560:intron 35.0%
! ACCAAGAACAACACTTTTAC+TGG - chr7_4:54783847-54783866 Msa1163560:intron 35.0%
!! TCCAGTAAAAGTGTTGTTCT+TGG + chr7_4:54783851-54783870 None:intergenic 35.0%
AACAATGACAGATGACTTAG+AGG - chr7_4:54783899-54783918 Msa1163560:intron 35.0%
! GAATTTATAGTGGGAGTTTC+TGG + chr7_4:54783969-54783988 None:intergenic 35.0%
CCAAACAAAAAATGTGGGAA+AGG + chr7_4:54784028-54784047 None:intergenic 35.0%
!!! CCTTTCCCACATTTTTTGTT+TGG - chr7_4:54784025-54784044 Msa1163560:five_prime_UTR 35.0%
!!! TCCCACATTTTTTGTTTGGA+AGG - chr7_4:54784029-54784048 Msa1163560:five_prime_UTR 35.0%
CCCTTCCAAACAAAAAATGT+GGG + chr7_4:54784033-54784052 None:intergenic 35.0%
!!! CCCACATTTTTTGTTTGGAA+GGG - chr7_4:54784030-54784049 Msa1163560:five_prime_UTR 35.0%
ACCCTTCCAAACAAAAAATG+TGG + chr7_4:54784034-54784053 None:intergenic 35.0%
!! GAAGGGTGCTTTCAATTAAA+TGG - chr7_4:54784047-54784066 Msa1163560:five_prime_UTR 35.0%
TCCTTACATCTGAAAATGGA+AGG + chr7_4:54784220-54784239 None:intergenic 35.0%
! AGGAGATGAGCATAGGTTTT+TGG + chr7_4:54777970-54777989 None:intergenic 40.0%
AGATGATGAAACAGTAGCGA+AGG + chr7_4:54778154-54778173 None:intergenic 40.0%
GAGACACAAATACAGAAACG+TGG + chr7_4:54778280-54778299 None:intergenic 40.0%
! TCCATTGGGTTGTTCCAAAT+TGG - chr7_4:54778755-54778774 Msa1163560:CDS 40.0%
CAAATATGGGCAACTTGACA+AGG + chr7_4:54779078-54779097 None:intergenic 40.0%
! CTTGTCAAGTTGCCCATATT+TGG - chr7_4:54779076-54779095 Msa1163560:intron 40.0%
ATGAATCGCCAGCCAAATAT+GGG + chr7_4:54779091-54779110 None:intergenic 40.0%
TATGAATCGCCAGCCAAATA+TGG + chr7_4:54779092-54779111 None:intergenic 40.0%
ACAATGTTTAGCAGACCAAG+TGG - chr7_4:54779323-54779342 Msa1163560:intron 40.0%
CTCCATTGAGGAAATCTGAA+GGG + chr7_4:54779481-54779500 None:intergenic 40.0%
TCTCCATTGAGGAAATCTGA+AGG + chr7_4:54779482-54779501 None:intergenic 40.0%
ACTACTGTGAGAAAGGGTTA+TGG - chr7_4:54779561-54779580 Msa1163560:intron 40.0%
! CCATCCCACATTTTGCATTA+CGG + chr7_4:54779682-54779701 None:intergenic 40.0%
TAAGTGTGAGTGGGGTTAAA+GGG + chr7_4:54779763-54779782 None:intergenic 40.0%
!! TAGCTTTGGTAAGTGTGAGT+GGG + chr7_4:54779772-54779791 None:intergenic 40.0%
!! ATAGCTTTGGTAAGTGTGAG+TGG + chr7_4:54779773-54779792 None:intergenic 40.0%
TTAGTTGAGCAAAGAATCGC+AGG + chr7_4:54779844-54779863 None:intergenic 40.0%
GCGATTCTTTGCTCAACTAA+AGG - chr7_4:54779844-54779863 Msa1163560:intron 40.0%
CTTACCTGCTGTAGAAAAAC+TGG + chr7_4:54779886-54779905 None:intergenic 40.0%
!! TTGTCAACAATTTTGGCCCA+GGG + chr7_4:54780043-54780062 None:intergenic 40.0%
!! TTTGTCAACAATTTTGGCCC+AGG + chr7_4:54780044-54780063 None:intergenic 40.0%
CGGAAGGAGAACTACTTAAT+TGG - chr7_4:54780142-54780161 Msa1163560:intron 40.0%
TTGCTTTCCCCATTTCACAA+TGG - chr7_4:54780185-54780204 Msa1163560:intron 40.0%
CTGGAAACCATTGTGAAATG+GGG + chr7_4:54780195-54780214 None:intergenic 40.0%
CCTGGAAACCATTGTGAAAT+GGG + chr7_4:54780196-54780215 None:intergenic 40.0%
ACCTGGAAACCATTGTGAAA+TGG + chr7_4:54780197-54780216 None:intergenic 40.0%
CAGGACTAGATTGAACTTTC+GGG + chr7_4:54780225-54780244 None:intergenic 40.0%
AAACGATATTGTGCTCCATC+AGG + chr7_4:54780244-54780263 None:intergenic 40.0%
TACTTACCAAGACCCTTGAA+TGG - chr7_4:54780266-54780285 Msa1163560:CDS 40.0%
TAAAGTCCATTCAAGGGTCT+TGG + chr7_4:54780275-54780294 None:intergenic 40.0%
ACCGATCAAACATGCTATGT+AGG + chr7_4:54780309-54780328 None:intergenic 40.0%
AGGACTATTTAGATGCTCCA+TGG - chr7_4:54780501-54780520 Msa1163560:intron 40.0%
GCTCCATGGTACCTTATATA+AGG - chr7_4:54780515-54780534 Msa1163560:intron 40.0%
! ACAGGAACTTTTGTGTCAGA+AGG - chr7_4:54780770-54780789 Msa1163560:intron 40.0%
! CAGGAACTTTTGTGTCAGAA+GGG - chr7_4:54780771-54780790 Msa1163560:intron 40.0%
CAGAAAAGGCTTATGGTAGT+TGG - chr7_4:54780820-54780839 Msa1163560:intron 40.0%
ATGCCAGCATGAATATGACA+AGG + chr7_4:54780873-54780892 None:intergenic 40.0%
GAAGATGGTCAAACTTGTCT+AGG - chr7_4:54780950-54780969 Msa1163560:intron 40.0%
CTACCAAACAATAGCCATGT+AGG - chr7_4:54781592-54781611 Msa1163560:intron 40.0%
CAACCTACATGGCTATTGTT+TGG + chr7_4:54781598-54781617 None:intergenic 40.0%
TATATGTCTTCTGCTGTACC+TGG - chr7_4:54781666-54781685 Msa1163560:intron 40.0%
AATGTCATGGCAGTCGTTAA+AGG - chr7_4:54781978-54781997 Msa1163560:CDS 40.0%
ACCATAGATATTGTTCCCTC+GGG + chr7_4:54782133-54782152 None:intergenic 40.0%
CACCATAGATATTGTTCCCT+CGG + chr7_4:54782134-54782153 None:intergenic 40.0%
TGGCAAAGAAATTACTGACG+TGG - chr7_4:54782189-54782208 Msa1163560:intron 40.0%
TTATTCCAGGTATTCTGCCT+GGG - chr7_4:54782232-54782251 Msa1163560:intron 40.0%
CCAAGTACGAAAATGACCTT+TGG + chr7_4:54782443-54782462 None:intergenic 40.0%
!! CCAAAGGTCATTTTCGTACT+TGG - chr7_4:54782440-54782459 Msa1163560:CDS 40.0%
GAGCATGGAAACTCTCATTA+TGG - chr7_4:54782753-54782772 Msa1163560:CDS 40.0%
!! TGCTACGAGAGGCATTATAT+GGG + chr7_4:54782782-54782801 None:intergenic 40.0%
TCATTGTTGAGGTATGGTCT+TGG - chr7_4:54782831-54782850 Msa1163560:CDS 40.0%
! TAAAAAGCATGCACACACAG+AGG + chr7_4:54782974-54782993 None:intergenic 40.0%
! TGAGTATTTGGTTCCCATGA+TGG + chr7_4:54783195-54783214 None:intergenic 40.0%
ATCATGGGAACCAAATACTC+AGG - chr7_4:54783194-54783213 Msa1163560:intron 40.0%
TCATGGGAACCAAATACTCA+GGG - chr7_4:54783195-54783214 Msa1163560:intron 40.0%
! TTTTGCAACTGGCAATCACT+TGG - chr7_4:54783380-54783399 Msa1163560:intron 40.0%
ATAGGGGTGATTATTCTGGT+TGG + chr7_4:54783427-54783446 None:intergenic 40.0%
GAAGATAGGGGTGATTATTC+TGG + chr7_4:54783431-54783450 None:intergenic 40.0%
ATCACCCCTATCTTCTTGAT+TGG - chr7_4:54783436-54783455 Msa1163560:intron 40.0%
!! TCATTCTGTGTCAAGTTGGA+AGG + chr7_4:54783555-54783574 None:intergenic 40.0%
CAAATGAGTATCACGAGGAT+CGG - chr7_4:54783595-54783614 Msa1163560:intron 40.0%
AAATGAGTATCACGAGGATC+GGG - chr7_4:54783596-54783615 Msa1163560:intron 40.0%
GTTTGGTCATTGAAATCTGG+AGG + chr7_4:54783777-54783796 None:intergenic 40.0%
! TTTATAGTGGGAGTTTCTGG+AGG + chr7_4:54783966-54783985 None:intergenic 40.0%
! GCAGTGCTGGAATTTATAGT+GGG + chr7_4:54783978-54783997 None:intergenic 40.0%
! AGCAGTGCTGGAATTTATAG+TGG + chr7_4:54783979-54783998 None:intergenic 40.0%
GTCCCTCTCTAATTGTTATC+TGG - chr7_4:54784096-54784115 Msa1163560:five_prime_UTR 40.0%
AATGAACCTCAGCTTGATGT+TGG - chr7_4:54784171-54784190 Msa1163560:five_prime_UTR 40.0%
TAAGTTCCAACATCAAGCTG+AGG + chr7_4:54784180-54784199 None:intergenic 40.0%
! GCCTTCCATTTTCAGATGTA+AGG - chr7_4:54784216-54784235 Msa1163560:five_prime_UTR 40.0%
GATGAAACAGTAGCGAAGGA+AGG + chr7_4:54778150-54778169 None:intergenic 45.0%
GAATTGAAGTTAGCAGTCCG+AGG - chr7_4:54778610-54778629 Msa1163560:CDS 45.0%
! GCCAATTTGGAACAACCCAA+TGG + chr7_4:54778759-54778778 None:intergenic 45.0%
! TCAAGTTGCCCATATTTGGC+TGG - chr7_4:54779080-54779099 Msa1163560:intron 45.0%
CCATTCCCCAAAGACCAAAA+CGG + chr7_4:54779269-54779288 None:intergenic 45.0%
! TTGGTCTTTGGGGAATGGAT+TGG - chr7_4:54779271-54779290 Msa1163560:intron 45.0%
TTTAGCAGACCAAGTGGTTC+CGG - chr7_4:54779329-54779348 Msa1163560:intron 45.0%
AGCCCTTCAGATTTCCTCAA+TGG - chr7_4:54779476-54779495 Msa1163560:intron 45.0%
! GGGTTCACCATATGCTTTTC+AGG - chr7_4:54779623-54779642 Msa1163560:CDS 45.0%
GGCTCCGTAATGCAAAATGT+GGG - chr7_4:54779675-54779694 Msa1163560:intron 45.0%
CCGTAATGCAAAATGTGGGA+TGG - chr7_4:54779679-54779698 Msa1163560:intron 45.0%
GGAATTAAGCCCTGTGATCT+TGG - chr7_4:54779716-54779735 Msa1163560:intron 45.0%
GCTTCTTTGCCAAGATCACA+GGG + chr7_4:54779728-54779747 None:intergenic 45.0%
AGCTTCTTTGCCAAGATCAC+AGG + chr7_4:54779729-54779748 None:intergenic 45.0%
GTAAGTGTGAGTGGGGTTAA+AGG + chr7_4:54779764-54779783 None:intergenic 45.0%
! AGCTTTGGTAAGTGTGAGTG+GGG + chr7_4:54779771-54779790 None:intergenic 45.0%
ACCTGCTGTAGAAAAACTGG+CGG + chr7_4:54779883-54779902 None:intergenic 45.0%
TCGGAAACTATGTGTGCTGA+AGG - chr7_4:54780084-54780103 Msa1163560:CDS 45.0%
CCCATTTCACAATGGTTTCC+AGG - chr7_4:54780193-54780212 Msa1163560:intron 45.0%
TGCTGGCATATCTCTTTCTG+AGG - chr7_4:54780884-54780903 Msa1163560:intron 45.0%
TTCGAGATGATGCTGTGCTT+GGG + chr7_4:54780933-54780952 None:intergenic 45.0%
GATGGTCAAACTTGTCTAGG+TGG - chr7_4:54780953-54780972 Msa1163560:intron 45.0%
TATAGGTCGACCATCTCTTC+AGG - chr7_4:54781759-54781778 Msa1163560:intron 45.0%
TAATCCGATGCCTGAAGAGA+TGG + chr7_4:54781772-54781791 None:intergenic 45.0%
TGCAATTGCAGATGAGCTTC+TGG - chr7_4:54782099-54782118 Msa1163560:CDS 45.0%
TCCCGAGGGAACAATATCTA+TGG - chr7_4:54782129-54782148 Msa1163560:CDS 45.0%
CGAGGGAACAATATCTATGG+TGG - chr7_4:54782132-54782151 Msa1163560:CDS 45.0%
TATATGCCAAAGAGATGGCG+TGG - chr7_4:54782169-54782188 Msa1163560:intron 45.0%
CAGGCAGAATACCTGGAATA+AGG + chr7_4:54782233-54782252 None:intergenic 45.0%
CTTATTCCAGGTATTCTGCC+TGG - chr7_4:54782231-54782250 Msa1163560:intron 45.0%
TATTCCAGGTATTCTGCCTG+GGG - chr7_4:54782233-54782252 Msa1163560:intron 45.0%
!! GCTACGAGAGGCATTATATG+GGG + chr7_4:54782781-54782800 None:intergenic 45.0%
!! CTGCTACGAGAGGCATTATA+TGG + chr7_4:54782783-54782802 None:intergenic 45.0%
ATAATGCCTCTCGTAGCAGA+AGG - chr7_4:54782784-54782803 Msa1163560:CDS 45.0%
AAGGAGTTCACAGGGAAAGA+TGG - chr7_4:54782803-54782822 Msa1163560:CDS 45.0%
CATGGGAACCAAATACTCAG+GGG - chr7_4:54783196-54783215 Msa1163560:intron 45.0%
AACTGCTTCCCCTGAGTATT+TGG + chr7_4:54783207-54783226 None:intergenic 45.0%
GAGCGGAAGTTATCAGTACA+TGG - chr7_4:54783252-54783271 Msa1163560:intron 45.0%
!! CCAGTTGCAAAAGTGCTGTA+TGG + chr7_4:54783372-54783391 None:intergenic 45.0%
! CCATACAGCACTTTTGCAAC+TGG - chr7_4:54783369-54783388 Msa1163560:intron 45.0%
GCAATCACTTGGATTCGTTG+TGG - chr7_4:54783391-54783410 Msa1163560:intron 45.0%
TCTCTTGAAGCTGCATCATG+AGG + chr7_4:54783477-54783496 None:intergenic 45.0%
GGGTTCATTCTGTGTCAAGT+TGG + chr7_4:54783559-54783578 None:intergenic 45.0%
CTAAAGCTCTCCCTAAGGAT+GGG + chr7_4:54783654-54783673 None:intergenic 45.0%
ACTAAAGCTCTCCCTAAGGA+TGG + chr7_4:54783655-54783674 None:intergenic 45.0%
! GTTTTCTGATAGAGGGTCAG+AGG - chr7_4:54783818-54783837 Msa1163560:intron 45.0%
ATGACAGATGACTTAGAGGC+AGG - chr7_4:54783903-54783922 Msa1163560:intron 45.0%
TACTCAAAAGCTAGCAGTGC+TGG + chr7_4:54783991-54784010 None:intergenic 45.0%
AGAGAGGGACAATCATGACT+TGG + chr7_4:54784086-54784105 None:intergenic 45.0%
GGGGTCCTTACATCTGAAAA+TGG + chr7_4:54784224-54784243 None:intergenic 45.0%
GTTCGGAAGGAGATGAGCAT+AGG + chr7_4:54777977-54777996 None:intergenic 50.0%
TCAACGCCAAAGTCCCAAAG+GGG + chr7_4:54778928-54778947 None:intergenic 50.0%
GTCAACGCCAAAGTCCCAAA+GGG + chr7_4:54778929-54778948 None:intergenic 50.0%
TGTCAACGCCAAAGTCCCAA+AGG + chr7_4:54778930-54778949 None:intergenic 50.0%
!! CCGTTTTGGTCTTTGGGGAA+TGG - chr7_4:54779266-54779285 Msa1163560:intron 50.0%
!! CTAAAAGCACCGGAACCACT+TGG + chr7_4:54779341-54779360 None:intergenic 50.0%
GGGCTCCGTAATGCAAAATG+TGG - chr7_4:54779674-54779693 Msa1163560:intron 50.0%
GGGATGGATGCTGTTGAATC+TGG - chr7_4:54779695-54779714 Msa1163560:intron 50.0%
! TCCGCCAGTTTTTCTACAGC+AGG - chr7_4:54779879-54779898 Msa1163560:intron 50.0%
AGTCATGAGACTGATGCGGA+AGG - chr7_4:54780126-54780145 Msa1163560:CDS 50.0%
TCACAATGGTTTCCAGGTGC+TGG - chr7_4:54780199-54780218 Msa1163560:intron 50.0%
CTTCGAGATGATGCTGTGCT+TGG + chr7_4:54780934-54780953 None:intergenic 50.0%
GCACAGCATCATCTCGAAGA+TGG - chr7_4:54780935-54780954 Msa1163560:intron 50.0%
! GGGCCTCCATCAAAGGTTTT+TGG + chr7_4:54781192-54781211 None:intergenic 50.0%
TCGACCATCTCTTCAGGCAT+CGG - chr7_4:54781765-54781784 Msa1163560:intron 50.0%
CAGAATTGCAGCAAAGCCAC+CGG + chr7_4:54781882-54781901 None:intergenic 50.0%
!! CTTCTGGTCTTAGATCCCGA+GGG - chr7_4:54782115-54782134 Msa1163560:CDS 50.0%
TCTTTGCCACGCCATCTCTT+TGG + chr7_4:54782178-54782197 None:intergenic 50.0%
! ATGTATTGATCGGACACCCC+AGG + chr7_4:54782252-54782271 None:intergenic 50.0%
!! AAGGTGTTGGGCATGTTTGC+AGG - chr7_4:54782575-54782594 Msa1163560:CDS 50.0%
GGCATGTTTGCAGGTTAGCA+TGG - chr7_4:54782584-54782603 Msa1163560:CDS 50.0%
TGAACTCCTTCTGCTACGAG+AGG + chr7_4:54782793-54782812 None:intergenic 50.0%
TCGTAGCAGAAGGAGTTCAC+AGG - chr7_4:54782794-54782813 Msa1163560:CDS 50.0%
CGTAGCAGAAGGAGTTCACA+GGG - chr7_4:54782795-54782814 Msa1163560:CDS 50.0%
CATCTTCCCCTCCTAGAATG+TGG - chr7_4:54783286-54783305 Msa1163560:intron 50.0%
TTCCCCTCCTAGAATGTGGA+GGG - chr7_4:54783290-54783309 Msa1163560:intron 50.0%
! TACCCCTCCACATTCTAGGA+GGG + chr7_4:54783296-54783315 None:intergenic 50.0%
TCTTCATCCCCTGCCGTATT+GGG + chr7_4:54783321-54783340 None:intergenic 50.0%
CAGGGGATGAAGACAGAAAC+AGG - chr7_4:54783328-54783347 Msa1163560:intron 50.0%
AGTGCTGTATGGCATTTCCC+TGG + chr7_4:54783361-54783380 None:intergenic 50.0%
!! GGAAGGCATCGAATAGTCTC+TGG + chr7_4:54783538-54783557 None:intergenic 50.0%
ATCGGGCTGCATCTCAACTT+GGG - chr7_4:54783613-54783632 Msa1163560:intron 50.0%
CTCATCAGCTCCCATCCTTA+GGG - chr7_4:54783641-54783660 Msa1163560:intron 50.0%
CCTGACTAAAGCTCTCCCTA+AGG + chr7_4:54783659-54783678 None:intergenic 50.0%
! CCTTAGGGAGAGCTTTAGTC+AGG - chr7_4:54783656-54783675 Msa1163560:intron 50.0%
TTCTAGCCCACCAATGGCTT+CGG + chr7_4:54783713-54783732 None:intergenic 50.0%
AGGACCCCAGCAAAATAGTC+TGG - chr7_4:54784236-54784255 Msa1163560:five_prime_UTR 50.0%
TTAGGTTCAGCTCGCCCCTT+TGG - chr7_4:54778911-54778930 Msa1163560:CDS 55.0%
TAGGTTCAGCTCGCCCCTTT+GGG - chr7_4:54778912-54778931 Msa1163560:CDS 55.0%
GGCGCGTCATCTTTGACTAG+AGG - chr7_4:54779383-54779402 Msa1163560:CDS 55.0%
TACGGAAGGATCCCAAGTCC+AGG - chr7_4:54779446-54779465 Msa1163560:intron 55.0%
GGCTCTCACTTCCTGGACTT+GGG + chr7_4:54779460-54779479 None:intergenic 55.0%
TCTGAAGGGCTCTCACTTCC+TGG + chr7_4:54779467-54779486 None:intergenic 55.0%
! CACTGATGGGCCTCCATCAA+AGG + chr7_4:54781199-54781218 None:intergenic 55.0%
CTTTGATGGAGGCCCATCAG+TGG - chr7_4:54781197-54781216 Msa1163560:CDS 55.0%
GCTCATCTGCAATTGCAGCC+CGG + chr7_4:54782096-54782115 None:intergenic 55.0%
!! GCTTCTGGTCTTAGATCCCG+AGG - chr7_4:54782114-54782133 Msa1163560:CDS 55.0%
CTTCCCCTCCTAGAATGTGG+AGG - chr7_4:54783289-54783308 Msa1163560:intron 55.0%
TCCCCTCCTAGAATGTGGAG+GGG - chr7_4:54783291-54783310 Msa1163560:intron 55.0%
! ACCCCTCCACATTCTAGGAG+GGG + chr7_4:54783295-54783314 None:intergenic 55.0%
CTACCCCTCCACATTCTAGG+AGG + chr7_4:54783297-54783316 None:intergenic 55.0%
GGACTACCCCTCCACATTCT+AGG + chr7_4:54783300-54783319 None:intergenic 55.0%
GTGGAGGGGTAGTCCCAATA+CGG - chr7_4:54783305-54783324 Msa1163560:intron 55.0%
GTCTTCATCCCCTGCCGTAT+TGG + chr7_4:54783322-54783341 None:intergenic 55.0%
GATCGGGCTGCATCTCAACT+TGG - chr7_4:54783612-54783631 Msa1163560:intron 55.0%
TCGGGCTGCATCTCAACTTG+GGG - chr7_4:54783614-54783633 Msa1163560:intron 55.0%
CCTAAGGATGGGAGCTGATG+AGG + chr7_4:54783643-54783662 None:intergenic 55.0%
CCTCATCAGCTCCCATCCTT+AGG - chr7_4:54783640-54783659 Msa1163560:intron 55.0%
TCTAGCCCACCAATGGCTTC+GGG + chr7_4:54783712-54783731 None:intergenic 55.0%
GACGACTTCTAGCCCACCAA+TGG + chr7_4:54783719-54783738 None:intergenic 55.0%
!! GGTGGGCTAGAAGTCGTCTA+CGG - chr7_4:54783721-54783740 Msa1163560:intron 55.0%
GCTAGAAGTCGTCTACGGAG+TGG - chr7_4:54783726-54783745 Msa1163560:intron 55.0%
TCTACGGAGTGGACAAGCTC+AGG - chr7_4:54783737-54783756 Msa1163560:intron 55.0%
!! AGCTCGCCCCTTTGGGACTT+TGG - chr7_4:54778919-54778938 Msa1163560:CDS 60.0%
GGGCTCTCACTTCCTGGACT+TGG + chr7_4:54779461-54779480 None:intergenic 60.0%
TGAACTTTCGGGCCAGCACC+TGG + chr7_4:54780214-54780233 None:intergenic 60.0%
GACACCCCAGGCAGAATACC+TGG + chr7_4:54782240-54782259 None:intergenic 60.0%
AGGGGTAGTCCCAATACGGC+AGG - chr7_4:54783309-54783328 Msa1163560:intron 60.0%
GGGGTAGTCCCAATACGGCA+GGG - chr7_4:54783310-54783329 Msa1163560:intron 60.0%
GGGTAGTCCCAATACGGCAG+GGG - chr7_4:54783311-54783330 Msa1163560:intron 60.0%
!! CAATGGCTTCGGGTTGCGTG+GGG + chr7_4:54783702-54783721 None:intergenic 60.0%
!! CCAATGGCTTCGGGTTGCGT+GGG + chr7_4:54783703-54783722 None:intergenic 60.0%
!! ACCAATGGCTTCGGGTTGCG+TGG + chr7_4:54783704-54783723 None:intergenic 60.0%
ACGCAACCCGAAGCCATTGG+TGG - chr7_4:54783703-54783722 Msa1163560:intron 60.0%
CGCAACCCGAAGCCATTGGT+GGG - chr7_4:54783704-54783723 Msa1163560:intron 60.0%
CCCACGCAACCCGAAGCCAT+TGG - chr7_4:54783700-54783719 Msa1163560:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 54777920 54784259 54777920 ID=Msa1163560;Name=Msa1163560
chr7_4 mRNA 54777920 54784259 54777920 ID=Msa1163560-mRNA-1;Parent=Msa1163560;Name=Msa1163560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=415|1|1|1|0.8|0.72|11|252|865
chr7_4 exon 54777920 54779003 54777920 ID=Msa1163560-mRNA-1:exon:15967;Parent=Msa1163560-mRNA-1
chr7_4 exon 54779338 54779448 54779338 ID=Msa1163560-mRNA-1:exon:15966;Parent=Msa1163560-mRNA-1
chr7_4 exon 54779583 54779653 54779583 ID=Msa1163560-mRNA-1:exon:15965;Parent=Msa1163560-mRNA-1
chr7_4 exon 54779734 54779811 54779734 ID=Msa1163560-mRNA-1:exon:15964;Parent=Msa1163560-mRNA-1
chr7_4 exon 54779939 54780145 54779939 ID=Msa1163560-mRNA-1:exon:15963;Parent=Msa1163560-mRNA-1
chr7_4 exon 54780236 54780415 54780236 ID=Msa1163560-mRNA-1:exon:15962;Parent=Msa1163560-mRNA-1
chr7_4 exon 54781183 54781405 54781183 ID=Msa1163560-mRNA-1:exon:15961;Parent=Msa1163560-mRNA-1
chr7_4 exon 54781853 54782173 54781853 ID=Msa1163560-mRNA-1:exon:15960;Parent=Msa1163560-mRNA-1
chr7_4 exon 54782279 54782926 54782279 ID=Msa1163560-mRNA-1:exon:15959;Parent=Msa1163560-mRNA-1
chr7_4 exon 54783201 54783264 54783201 ID=Msa1163560-mRNA-1:exon:15958;Parent=Msa1163560-mRNA-1
chr7_4 exon 54783982 54784259 54783982 ID=Msa1163560-mRNA-1:exon:15957;Parent=Msa1163560-mRNA-1
chr7_4 five_prime_UTR 54783982 54784259 54783982 ID=Msa1163560-mRNA-1:five_prime_utr;Parent=Msa1163560-mRNA-1
chr7_4 five_prime_UTR 54783201 54783264 54783201 ID=Msa1163560-mRNA-1:five_prime_utr;Parent=Msa1163560-mRNA-1
chr7_4 five_prime_UTR 54782854 54782926 54782854 ID=Msa1163560-mRNA-1:five_prime_utr;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54782279 54782853 54782279 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54781853 54782173 54781853 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54781183 54781405 54781183 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54780236 54780415 54780236 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54779939 54780145 54779939 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54779734 54779811 54779734 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54779583 54779653 54779583 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54779338 54779448 54779338 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 CDS 54778172 54779003 54778172 ID=Msa1163560-mRNA-1:cds;Parent=Msa1163560-mRNA-1
chr7_4 three_prime_UTR 54777920 54778171 54777920 ID=Msa1163560-mRNA-1:three_prime_utr;Parent=Msa1163560-mRNA-1
Gene Sequence

>Msa1163560

ATGTTTAGCAGACCAAGTGGTTCCGGTGCTTTTAGTATATTCAAATGGAAACAGAAAGGCGCGTCATCTTTGACTAGAGGTTTACTTCATGATGATTCGCCGGAGATCGAATTGTCTAATTACGGAAGGATCCCAAGTCCAGGAAGTGAGAGCCCTTCAGATTTCCTCAATGGAGAAAGTGTATATGTAGAACCAATTGCTGATTTGGATCTCTTCTTTGAAAGACTTTATGGTTACTACTGTGAGAAAGGGTTATGGTGTATTGTTACAAAGTGGATTGTTGAACTTCTAAGTCTGGGGTTCACCATATGCTTTTCAGGATTTTTTTTACTATATGTTGATTGGAATGGGCTCCGTAATGCAAAATGTGGGATGGATGCTGTTGAATCTGGAATTAAGCCCTGTGATCTTGGCAAAGAAGCTCTTAATCAACACCCTTTAACCCCACTCACACTTACCAAAGCTATTATTGTTGGATACTTGGGGATTTTTTCCTTCTATTGGATGTTTTGTTTCCTGCGATTCTTTGCTCAACTAAAGGATATTCTCGAAATCCGCCAGTTTTTCTACAGCAGTCTTCATGTCACTGACAATGAAATTCAAACTATGCCCTGGGCCAAAATTGTTGACAAAGTTGTTCTCGTTCAAAATACTCGGAAACTATGTGTGCTGAAGGATCTTTCTGCCCATGATATAGTCATGAGACTGATGCGGAAGGAGAACTACTTAATTGGAATGCTCAACAAGGGTGTGCTTGCTTTCCCCATTTCACAATGGTTTCCAGGTGCTGGCCCGAAAGTTCAATCTAGTCCTGATGGAGCACAATATCGTTTAGTACTTACCAAGACCCTTGAATGGACTTTAAATTGGTGCATCCTACATAGCATGTTTGATCGGAACTTTTGTGTCAGAAGGGATTTTGTGTCAAATCCAAAGACATTACAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTTTCTCCATTCCTTGTCATATTCATGCTGGCATATCTCTTTCTGAGGCATGCTGAGCAATTTTATAATCACCCAAGCACAGCATCATCTCGAAGATGGTCAAACTTGTCTAGGTGGATTTTTAGGGAATACAATGAGGTCGACCATCTCTTCAGGCATCGGATTAATAACAGTGTATCACATGCTTCTGATTATCTCAAGCAGTTTCCTACACCTATCATATCTATCATTGCAAAATTCATATCTTTTGTATCCGGTGGCTTTGCTGCAATTCTGATCATTATTGCTTTTCTCGAGGAGTCTCTGCTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACTGCTATTAGCCGGGCTGCAATTGCAGATGAGCTTCTGGTCTTAGATCCCGAGGGAACAATATCTATGGTGGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAATTACTGACGTGGTCCGCATTGAATTTGAAACCTTATTCCAGTATACAGCAATGATGTTACTTGAGGAGATGGCTTCAATTTTCCTCACTCCATATTTACTTCTGTTTATTGTCCCAAAGCGAGTTGATGATATCTTGCAGTACATTGCCGATTTCACTGTAAATGTTGAAGGTGTTGGGCATGTTTGCAGTTTTAGCACCTTTGATTTTCAAGAGCATGGAAACTCTCATTATGGTTCCCCATATAATGCCTCTCGTAGCAGAAGGAGTTCACAGGGAAAGATGGAGAAATCATTGTTGAGCTTTCAGAGTAGTTATCCATCATGGGAACCAAATACTCAGGGGAAGCAGTTTTTGCTAAATCTTAGAACATTCAGAGAGCGGAAGTTATCAGTACATGGAAACATACACACATCTTCCCCTCCTAGAATGTGGAGGGGTAGTCCCAATACGGCAGGGGATGAAGACAGAAACAGGTTTATATCCAGGGAAATGCCATACAGCACTTTTGCAACTGGCAATCACTTGGATTCGTTGTGGTTGATTGAAGCCAACCAGAATAATCACCCCTATCTTCTTGATTGGTACTACACAGCTCGACCTCATGATGCAGCTTCAAGAGATGTTCCATTAGAACCATATGGAATAACAGAACGTTATTCCAGAGACTATTCGATGCCTTCCAACTTGACACAGAATGAACCCAACTATGAAGAATACTCAAATGAGTATCACGAGGATCGGGCTGCATCTCAACTTGGGGCTTCCTCATCAGCTCCCATCCTTAGGGAGAGCTTTAGTCAGGAGCAAAACTATAATGAACTTCCCCACGCAACCCGAAGCCATTGGTGGGCTAGAAGTCGTCTACGGAGTGGACAAGCTCAGGCAAGCTTTTACGAGCCTCCAGATTTCAATGACCAAACAACATATAATTATCATGACAAGTTTTCTGATAGAGGGTCAGAGGATCAAGACCAAGAACAACACTTTTACTGGAGAGATCATCACAACAAATTATCTAAAACAACAATGACAGATGACTTAGAGGCAGGAGAATTTAATCTACATTTTGGTGATATTTATAGCAGACCTCCAGAAACTCCCACTATAAATTCCAGCACTGCTAGCTTTTGA
Protein sequence

>Msa1163560

MFSRPSGSGAFSIFKWKQKGASSLTRGLLHDDSPEIELSNYGRIPSPGSESPSDFLNGESVYVEPIADLDLFFERLYGYYCEKGLWCIVTKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLGKEALNQHPLTPLTLTKAIIVGYLGIFSFYWMFCFLRFFAQLKDILEIRQFFYSSLHVTDNEIQTMPWAKIVDKVVLVQNTRKLCVLKDLSAHDIVMRLMRKENYLIGMLNKGVLAFPISQWFPGAGPKVQSSPDGAQYRLVLTKTLEWTLNWCILHSMFDRNFCVRRDFVSNPKTLQKRLMVVGLAMLLLSPFLVIFMLAYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREYNEVDHLFRHRINNSVSHASDYLKQFPTPIISIIAKFISFVSGGFAAILIIIAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAIADELLVLDPEGTISMVVQHTHYMPKRWRGKEITDVVRIEFETLFQYTAMMLLEEMASIFLTPYLLLFIVPKRVDDILQYIADFTVNVEGVGHVCSFSTFDFQEHGNSHYGSPYNASRSRRSSQGKMEKSLLSFQSSYPSWEPNTQGKQFLLNLRTFRERKLSVHGNIHTSSPPRMWRGSPNTAGDEDRNRFISREMPYSTFATGNHLDSLWLIEANQNNHPYLLDWYYTARPHDAASRDVPLEPYGITERYSRDYSMPSNLTQNEPNYEEYSNEYHEDRAASQLGASSSAPILRESFSQEQNYNELPHATRSHWWARSRLRSGQAQASFYEPPDFNDQTTYNYHDKFSDRGSEDQDQEQHFYWRDHHNKLSKTTMTDDLEAGEFNLHFGDIYSRPPETPTINSSTASF*