AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1170100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170100 MtrunA17_Chr7g0261081 96.536 866 29 1 1 865 1 866 0.0 1753
Msa1170100 MtrunA17_Chr1g0184191 77.560 869 188 6 1 865 1 866 0.0 1395
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170100 AT2G31260.1 65.533 882 265 15 1 862 2 864 0.0 1121

Find 248 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTTTGAAAGACTTTA+TGG 0.100521 7_4:-63190250 Msa1170100:CDS
GAATTTATAGTGGGAGTTTC+TGG 0.112453 7_4:+63185820 None:intergenic
GTCCCTCTCTAATTGTTATT+TGG 0.145427 7_4:-63185690 Msa1170100:three_prime_UTR
AACTGCTTCCCCTGAGTATT+TGG 0.152672 7_4:+63186582 None:intergenic
AACAACTTTGTCAACAATTT+TGG 0.153920 7_4:+63189739 None:intergenic
GAAGGGTGCTTTCAATTAAA+TGG 0.190594 7_4:-63185739 Msa1170100:three_prime_UTR
GGAGAATTTAATCTACATTT+TGG 0.223978 7_4:-63185862 Msa1170100:CDS
AAAATATCATTGCAGATATT+TGG 0.224381 7_4:-63187767 Msa1170100:intron
CCCTTGAATGGACTTTAAAT+TGG 0.245163 7_4:-63189508 Msa1170100:CDS
TGTAGAACCAATTGCTGATT+TGG 0.253494 7_4:-63190275 Msa1170100:CDS
CCCATTTCACAATGGTTTCC+AGG 0.256603 7_4:-63189593 Msa1170100:CDS
GTAAGTGTGAGTGGGGTTAA+AGG 0.263267 7_4:+63190025 None:intergenic
GTCTTCATCCCCTGCCGTAT+TGG 0.264537 7_4:+63186467 None:intergenic
CGGAAGGAGAACTACTTAAT+TGG 0.265768 7_4:-63189644 Msa1170100:CDS
GTTATTCCATATGGTTCTAA+TGG 0.268064 7_4:+63186285 None:intergenic
CTGCTACGAGAGGCATTATA+TGG 0.271120 7_4:+63187006 None:intergenic
TTCTAGCCCACCAATGGCTT+CGG 0.278161 7_4:+63186076 None:intergenic
CAGGACTAGATTGAACTTTC+GGG 0.278462 7_4:+63189564 None:intergenic
TCTGAAGGGCTCTCACTTCC+TGG 0.293553 7_4:+63190322 None:intergenic
TCTTCATCCCCTGCCGTATT+GGG 0.293680 7_4:+63186468 None:intergenic
TCCAGTAAAAGTGTTGTTCT+TGG 0.302842 7_4:+63185938 None:intergenic
CCTCATCAGCTCCCATCCTT+AGG 0.305842 7_4:-63186146 Msa1170100:CDS
TGCAATTGCAGATGAGCTTC+TGG 0.319750 7_4:-63187687 Msa1170100:CDS
GGGCTCTCACTTCCTGGACT+TGG 0.325164 7_4:+63190328 None:intergenic
TCAGGACTAGATTGAACTTT+CGG 0.327003 7_4:+63189563 None:intergenic
GAAGATAGGGGTGATTATTC+TGG 0.327635 7_4:+63186358 None:intergenic
AGCTATTATTGTTGGATACT+TGG 0.328327 7_4:-63189999 Msa1170100:CDS
AGCTCGCCCCTTTGGGACTT+TGG 0.342784 7_4:-63190867 Msa1170100:five_prime_UTR
GGACTACCCCTCCACATTCT+AGG 0.344102 7_4:+63186489 None:intergenic
ACAATAAACAGAAGTAAATA+TGG 0.345471 7_4:+63187370 None:intergenic
AAGGTGTTGGGCATGTTTGC+AGG 0.345877 7_4:-63187211 Msa1170100:intron
GAACCTTGTTATAACCGTTT+TGG 0.346406 7_4:-63190534 Msa1170100:five_prime_UTR
TTTGAGTATTCTTCATAGTT+GGG 0.347898 7_4:+63186210 None:intergenic
ATTTGAGTATTCTTCATAGT+TGG 0.350704 7_4:+63186209 None:intergenic
TAACGTTCTGTTATTCCATA+TGG 0.351902 7_4:+63186276 None:intergenic
TACTATATGTTGATTGGAAT+GGG 0.357764 7_4:-63190132 Msa1170100:CDS
GATTGTTGAACTTCTAAGTC+TGG 0.359203 7_4:-63190185 Msa1170100:CDS
CTTACCAAAGCTATTATTGT+TGG 0.359747 7_4:-63190007 Msa1170100:CDS
TATTTGGTCGGAACTTGTTT+TGG 0.363325 7_4:-63187751 Msa1170100:CDS
TTAGGTTCAGCTCGCCCCTT+TGG 0.364104 7_4:-63190875 Msa1170100:intron
CCTGGAAACCATTGTGAAAT+GGG 0.364513 7_4:+63189593 None:intergenic
CAGAAAAGGCTTATGGTAGT+TGG 0.367074 7_4:-63188966 Msa1170100:CDS
TCTAGCCCACCAATGGCTTC+GGG 0.369897 7_4:+63186077 None:intergenic
TGAATTTGAAACCTTATTCC+AGG 0.371525 7_4:-63187567 Msa1170100:intron
GTTGTTTGGTCATTGAAATC+TGG 0.373910 7_4:+63186009 None:intergenic
ATCACCCCTATCTTCTTGAT+TGG 0.376879 7_4:-63186350 Msa1170100:CDS
TCTTTGCCACGCCATCTCTT+TGG 0.378039 7_4:+63187611 None:intergenic
CAGGCAGAATACCTGGAATA+AGG 0.378454 7_4:+63187556 None:intergenic
TTTGCTGTATATAGATTCAT+TGG 0.378561 7_4:-63185656 Msa1170100:three_prime_UTR
GGAATTAAGCCCTGTGATCT+TGG 0.378592 7_4:-63190070 Msa1170100:CDS
GACATTACAGAAAAGGCTTA+TGG 0.380010 7_4:-63188973 Msa1170100:CDS
AACAATGACAGATGACTTAG+AGG 0.383575 7_4:-63185887 Msa1170100:CDS
TCACAATGGTTTCCAGGTGC+TGG 0.383647 7_4:-63189587 Msa1170100:CDS
TTCAACATTTACAGTGAAAT+CGG 0.386132 7_4:+63187232 None:intergenic
GCTATTATTGTTGGATACTT+GGG 0.389328 7_4:-63189998 Msa1170100:CDS
TTTAGCAGACCAAGTGGTTC+CGG 0.389483 7_4:-63190457 Msa1170100:CDS
TAAAGTCCATTCAAGGGTCT+TGG 0.389766 7_4:+63189514 None:intergenic
GAGCATGGAAACTCTCATTA+TGG 0.390073 7_4:-63187033 Msa1170100:CDS
ACCTGGAAACCATTGTGAAA+TGG 0.391785 7_4:+63189592 None:intergenic
CATGATAATTATATGTTGTT+TGG 0.395237 7_4:+63185995 None:intergenic
TACTCAAAAGCTAGCAGTGC+TGG 0.395445 7_4:+63185798 None:intergenic
GTAGTACCAATCAAGAAGAT+AGG 0.404579 7_4:+63186344 None:intergenic
GATCGGGCTGCATCTCAACT+TGG 0.409523 7_4:-63186174 Msa1170100:CDS
CTTCGAGATGATGCTGTGCT+TGG 0.409901 7_4:+63188855 None:intergenic
AGAAAAGGCTTATGGTAGTT+GGG 0.415599 7_4:-63188965 Msa1170100:CDS
TGAGTATTTGGTTCCCATGA+TGG 0.416490 7_4:+63186594 None:intergenic
GGCTCTCACTTCCTGGACTT+GGG 0.417635 7_4:+63190329 None:intergenic
GGGATGGATGCTGTTGAATC+TGG 0.418976 7_4:-63190091 Msa1170100:CDS
TTCAGAGTAGTTATCCATCA+TGG 0.419889 7_4:-63186608 Msa1170100:CDS
ATCGGGCTGCATCTCAACTT+GGG 0.423241 7_4:-63186173 Msa1170100:CDS
GAAACAAAACATCCAATAGA+AGG 0.424244 7_4:+63189967 None:intergenic
TTACTATATGTTGATTGGAA+TGG 0.426389 7_4:-63190133 Msa1170100:CDS
GGGGTCCTTACATCTGAAAA+TGG 0.427595 7_4:+63185565 None:intergenic
AGCTTCTTTGCCAAGATCAC+AGG 0.430987 7_4:+63190060 None:intergenic
TCCCGAGGGAACAATATCTA+TGG 0.431420 7_4:-63187657 Msa1170100:CDS
TTGGTCTTTGGGGAATGGAT+TGG 0.441248 7_4:-63190515 Msa1170100:five_prime_UTR
ACCAATTTAAAGTCCATTCA+AGG 0.443781 7_4:+63189507 None:intergenic
CAGGGGATGAAGACAGAAAC+AGG 0.448292 7_4:-63186458 Msa1170100:CDS
ATTGTTGAACTTCTAAGTCT+GGG 0.448533 7_4:-63190184 Msa1170100:CDS
AAGGAGTTCACAGGGAAAGA+TGG 0.449011 7_4:-63186983 Msa1170100:CDS
TATGGTTACTACTGTGAGAA+AGG 0.450099 7_4:-63190232 Msa1170100:CDS
CACCATAGATATTGTTCCCT+CGG 0.451923 7_4:+63187655 None:intergenic
TAAGTGTGAGTGGGGTTAAA+GGG 0.453021 7_4:+63190026 None:intergenic
GTATCCAACAATAATAGCTT+TGG 0.455646 7_4:+63190003 None:intergenic
AGCCCTTCAGATTTCCTCAA+TGG 0.457772 7_4:-63190310 Msa1170100:CDS
AAGAGATCCAAATCAGCAAT+TGG 0.458966 7_4:+63190268 None:intergenic
CCTTAGGGAGAGCTTTAGTC+AGG 0.459193 7_4:-63186130 Msa1170100:CDS
GCGATTCTTTGCTCAACTAA+AGG 0.459966 7_4:-63189942 Msa1170100:CDS
TACTTACCAAGACCCTTGAA+TGG 0.460856 7_4:-63189520 Msa1170100:CDS
ACCAATGGCTTCGGGTTGCG+TGG 0.462694 7_4:+63186085 None:intergenic
TGAACTTTCGGGCCAGCACC+TGG 0.463130 7_4:+63189575 None:intergenic
ATCCAAAGACATTACAGAAA+AGG 0.464783 7_4:-63188980 Msa1170100:CDS
AGCAGTGCTGGAATTTATAG+TGG 0.465268 7_4:+63185810 None:intergenic
ACAGAAACAGGTTTATATCC+AGG 0.466653 7_4:-63186446 Msa1170100:CDS
TTTGCAATGATAGATATGAT+AGG 0.466727 7_4:+63187947 None:intergenic
CTCATCAGCTCCCATCCTTA+GGG 0.467690 7_4:-63186145 Msa1170100:CDS
TATAGGTCGACCATCTCTTC+AGG 0.471785 7_4:-63188027 Msa1170100:intron
TGCTACGAGAGGCATTATAT+GGG 0.472893 7_4:+63187007 None:intergenic
TTCGAGATGATGCTGTGCTT+GGG 0.476956 7_4:+63188856 None:intergenic
TTTATTATAAAGTTTGCGTT+CGG 0.478832 7_4:+63191795 None:intergenic
GAACTATAACTGCTATTAGC+CGG 0.481240 7_4:-63187712 Msa1170100:CDS
TCAGTCTCATGACTATATCA+TGG 0.482419 7_4:+63189669 None:intergenic
TAGTACCAATCAAGAAGATA+GGG 0.482945 7_4:+63186345 None:intergenic
ACTGTAAATGTTGAAGGTGT+TGG 0.484395 7_4:-63187224 Msa1170100:CDS
GAGATCGAATTGTCTAATTA+CGG 0.486113 7_4:-63190358 Msa1170100:CDS
TCTACGGAGTGGACAAGCTC+AGG 0.488656 7_4:-63186049 Msa1170100:CDS
GATGTTCCATTAGAACCATA+TGG 0.488783 7_4:-63186291 Msa1170100:CDS
ATGAAATTCAAACTATGCCC+TGG 0.493235 7_4:-63189763 Msa1170100:CDS
CTGTAAATGTTGAAGGTGTT+GGG 0.496375 7_4:-63187223 Msa1170100:CDS
AAACGATATTGTGCTCCATC+AGG 0.497164 7_4:+63189545 None:intergenic
CCAATGGCTTCGGGTTGCGT+GGG 0.500174 7_4:+63186086 None:intergenic
ATGATAGATATGATAGGTGT+AGG 0.502443 7_4:+63187953 None:intergenic
AGGACCCCAGCAAAATAGTC+TGG 0.502578 7_4:-63185550 Msa1170100:three_prime_UTR
AAATGAGTATCACGAGGATC+GGG 0.504809 7_4:-63186190 Msa1170100:CDS
TAATTAGACAATTCGATCTC+CGG 0.512269 7_4:+63190361 None:intergenic
ATTCCTTGTCATATTCATGC+TGG 0.512407 7_4:-63188919 Msa1170100:CDS
CATATACACTTTCTCCATTG+AGG 0.512728 7_4:+63190296 None:intergenic
GATTTCACTGTAAATGTTGA+AGG 0.515835 7_4:-63187230 Msa1170100:CDS
ATCATGGGAACCAAATACTC+AGG 0.518116 7_4:-63186592 Msa1170100:CDS
ACTACTGTGAGAAAGGGTTA+TGG 0.518635 7_4:-63190225 Msa1170100:CDS
TATGAACCTCAGCTTGATGT+TGG 0.519250 7_4:-63185615 Msa1170100:three_prime_UTR
AGGGGTAGTCCCAATACGGC+AGG 0.521250 7_4:-63186477 Msa1170100:CDS
CAAATGAGTATCACGAGGAT+CGG 0.521885 7_4:-63186191 Msa1170100:CDS
AATGATGTTACTTGAGGAGA+TGG 0.523349 7_4:-63187410 Msa1170100:CDS
TATGGTGTATTGTTACAAAG+TGG 0.525702 7_4:-63190207 Msa1170100:CDS
GGAAGGCATCGAATAGTCTC+TGG 0.526974 7_4:+63186251 None:intergenic
ACCATAGATATTGTTCCCTC+GGG 0.527633 7_4:+63187656 None:intergenic
GTCAACGCCAAAGTCCCAAA+GGG 0.527737 7_4:+63190860 None:intergenic
GCACAGCATCATCTCGAAGA+TGG 0.528098 7_4:-63188851 Msa1170100:CDS
ATGGTTACTACTGTGAGAAA+GGG 0.529048 7_4:-63190231 Msa1170100:CDS
TAGCTTTGGTAAGTGTGAGT+GGG 0.530753 7_4:+63190017 None:intergenic
GAAGATGGTCAAACTTGTCT+AGG 0.533585 7_4:-63188836 Msa1170100:CDS
AGCATGAATATGACAAGGAA+TGG 0.534278 7_4:+63188921 None:intergenic
TCATTCTGTGTCAAGTTGGA+AGG 0.535353 7_4:+63186234 None:intergenic
TGTTCACAGACACTAATAGT+AGG 0.535903 7_4:+63190483 None:intergenic
ACTTCTGTTTATTGTCCCAA+AGG 0.536240 7_4:-63187362 Msa1170100:intron
CCTAAGGATGGGAGCTGATG+AGG 0.537502 7_4:+63186146 None:intergenic
TCAGAGTAGTTATCCATCAT+GGG 0.539771 7_4:-63186607 Msa1170100:CDS
CTATTATTGTTGGATACTTG+GGG 0.540123 7_4:-63189997 Msa1170100:CDS
TCCATGCTCTTGAAAATCAA+AGG 0.540684 7_4:+63187047 None:intergenic
AACTATAACTGCTATTAGCC+GGG 0.542388 7_4:-63187711 Msa1170100:CDS
ACTAAAGCTCTCCCTAAGGA+TGG 0.543023 7_4:+63186134 None:intergenic
ATAGGGGTGATTATTCTGGT+TGG 0.544484 7_4:+63186362 None:intergenic
AAAGTTCAATCTAGTCCTGA+TGG 0.544493 7_4:-63189560 Msa1170100:CDS
TAATCCGATGCCTGAAGAGA+TGG 0.549224 7_4:+63188017 None:intergenic
CTCGAGGAGTCTCTGCTAGA+GGG 0.550555 7_4:-63187869 Msa1170100:CDS
TTGTTCTCGTTCAAAATACT+CGG 0.551966 7_4:-63189721 Msa1170100:CDS
TCTCGAGGAGTCTCTGCTAG+AGG 0.552554 7_4:-63187870 Msa1170100:CDS
CTAAAAGCACCGGAACCACT+TGG 0.553267 7_4:+63190448 None:intergenic
GTTCGGAAGGAGATGAGCAT+AGG 0.553415 7_4:+63191812 None:intergenic
GCTTCTTTGCCAAGATCACA+GGG 0.553864 7_4:+63190061 None:intergenic
ACGCAACCCGAAGCCATTGG+TGG 0.555348 7_4:-63186083 Msa1170100:CDS
GTGGAGGGGTAGTCCCAATA+CGG 0.557059 7_4:-63186481 Msa1170100:CDS
GGGTAGTCCCAATACGGCAG+GGG 0.557263 7_4:-63186475 Msa1170100:CDS
TTATAAAGTTTGCGTTCGGA+AGG 0.557342 7_4:+63191799 None:intergenic
ATGACAGATGACTTAGAGGC+AGG 0.558731 7_4:-63185883 Msa1170100:CDS
TGCTGGCATATCTCTTTCTG+AGG 0.559787 7_4:-63188902 Msa1170100:CDS
TCGTAGCAGAAGGAGTTCAC+AGG 0.560103 7_4:-63186992 Msa1170100:CDS
TTAGTTGAGCAAAGAATCGC+AGG 0.562238 7_4:+63189945 None:intergenic
TCGACCATCTCTTCAGGCAT+CGG 0.562994 7_4:-63188021 Msa1170100:CDS
GGCGCGTCATCTTTGACTAG+AGG 0.563241 7_4:-63190403 Msa1170100:CDS
GGGCTCCGTAATGCAAAATG+TGG 0.563493 7_4:-63190112 Msa1170100:CDS
TTGTTGAACTTCTAAGTCTG+GGG 0.566155 7_4:-63190183 Msa1170100:CDS
AGTGCTGTATGGCATTTCCC+TGG 0.566226 7_4:+63186428 None:intergenic
TACGGAAGGATCCCAAGTCC+AGG 0.566589 7_4:-63190340 Msa1170100:CDS
CTTAATTGGAATGCTCAACA+AGG 0.567745 7_4:-63189630 Msa1170100:CDS
TATCATTGCAGATATTTGGT+CGG 0.568586 7_4:-63187763 Msa1170100:intron
CAGAAACAGGTTTATATCCA+GGG 0.569124 7_4:-63186445 Msa1170100:CDS
TTCCCCTCCTAGAATGTGGA+GGG 0.569698 7_4:-63186496 Msa1170100:CDS
TTTCCAAATAACAATTAGAG+AGG 0.570237 7_4:+63185687 None:intergenic
ACCGATCAAACATGCTATGT+AGG 0.571866 7_4:+63189480 None:intergenic
CAGAATTGCAGCAAAGCCAC+CGG 0.573817 7_4:+63187907 None:intergenic
TTTGAATATACTAAAAGCAC+CGG 0.574468 7_4:+63190438 None:intergenic
TTTACTTCATGATGATTCGC+CGG 0.574817 7_4:-63190380 Msa1170100:CDS
TCCTACATAGCATGTTTGAT+CGG 0.578136 7_4:-63189481 Msa1170100:intron
CTCCATTGAGGAAATCTGAA+GGG 0.578699 7_4:+63190308 None:intergenic
TCTCCATTGAGGAAATCTGA+AGG 0.580109 7_4:+63190307 None:intergenic
AGCTTTGGTAAGTGTGAGTG+GGG 0.580159 7_4:+63190018 None:intergenic
TTGCTTTCCCCATTTCACAA+TGG 0.581632 7_4:-63189601 Msa1170100:CDS
GGGGTAGTCCCAATACGGCA+GGG 0.581900 7_4:-63186476 Msa1170100:CDS
CCATTCCCCAAAGACCAAAA+CGG 0.583103 7_4:+63190520 None:intergenic
CGCAACCCGAAGCCATTGGT+GGG 0.583279 7_4:-63186082 Msa1170100:CDS
CCAGTTGCAAAAGTGCTGTA+TGG 0.583969 7_4:+63186417 None:intergenic
AGATGATGAAACAGTAGCGA+AGG 0.584404 7_4:+63191635 None:intergenic
GTTTGGTCATTGAAATCTGG+AGG 0.584448 7_4:+63186012 None:intergenic
CACATTATATGCCAAAGAGA+TGG 0.585314 7_4:-63187622 Msa1170100:CDS
GAGCGGAAGTTATCAGTACA+TGG 0.585425 7_4:-63186534 Msa1170100:CDS
TTCCAAATAACAATTAGAGA+GGG 0.588455 7_4:+63185688 None:intergenic
GATGAAACAGTAGCGAAGGA+AGG 0.589559 7_4:+63191639 None:intergenic
TCCTTACATCTGAAAATGGA+AGG 0.591128 7_4:+63185569 None:intergenic
TCGGAAACTATGTGTGCTGA+AGG 0.593556 7_4:-63189702 Msa1170100:CDS
CTAAAGCTCTCCCTAAGGAT+GGG 0.595120 7_4:+63186135 None:intergenic
GGGTTCATTCTGTGTCAAGT+TGG 0.595429 7_4:+63186230 None:intergenic
CCTGACTAAAGCTCTCCCTA+AGG 0.596692 7_4:+63186130 None:intergenic
TGAAATTCAAACTATGCCCT+GGG 0.597379 7_4:-63189762 Msa1170100:CDS
TCGGGCTGCATCTCAACTTG+GGG 0.597814 7_4:-63186172 Msa1170100:CDS
CAGTCTCATGACTATATCAT+GGG 0.597885 7_4:+63189670 None:intergenic
GACGACTTCTAGCCCACCAA+TGG 0.598590 7_4:+63186070 None:intergenic
GGTGGGCTAGAAGTCGTCTA+CGG 0.600262 7_4:-63186065 Msa1170100:CDS
ATAGCTTTGGTAAGTGTGAG+TGG 0.602946 7_4:+63190016 None:intergenic
CCAATTTAAAGTCCATTCAA+GGG 0.603846 7_4:+63189508 None:intergenic
CCGTAATGCAAAATGTGGGA+TGG 0.604122 7_4:-63190107 Msa1170100:CDS
ACCCCTCCACATTCTAGGAG+GGG 0.604562 7_4:+63186494 None:intergenic
GCTCATCTGCAATTGCAGCC+CGG 0.605056 7_4:+63187693 None:intergenic
TGTCAACGCCAAAGTCCCAA+AGG 0.605903 7_4:+63190859 None:intergenic
TTTATAGTGGGAGTTTCTGG+AGG 0.606997 7_4:+63185823 None:intergenic
CTTCCCCTCCTAGAATGTGG+AGG 0.608862 7_4:-63186497 Msa1170100:CDS
TCATGGGAACCAAATACTCA+GGG 0.611108 7_4:-63186591 Msa1170100:CDS
TAAGTTCCAACATCAAGCTG+AGG 0.612971 7_4:+63185609 None:intergenic
CATCTTCCCCTCCTAGAATG+TGG 0.614729 7_4:-63186500 Msa1170100:CDS
TACCCCTCCACATTCTAGGA+GGG 0.614814 7_4:+63186493 None:intergenic
AGAGAGGGACAATCATGACT+TGG 0.617793 7_4:+63185703 None:intergenic
ACAGAAGTAAATATGGAGTG+AGG 0.618250 7_4:+63187377 None:intergenic
AGATGGAGAAATCATTGTTG+AGG 0.619203 7_4:-63186966 Msa1170100:intron
TACAGCAATGATGTTACTTG+AGG 0.621146 7_4:-63187416 Msa1170100:CDS
TCTCTTGAAGCTGCATCATG+AGG 0.621641 7_4:+63186312 None:intergenic
GCAATCACTTGGATTCGTTG+TGG 0.621682 7_4:-63186395 Msa1170100:CDS
ATATTCAAATGGAAACAGAA+AGG 0.623281 7_4:-63190424 Msa1170100:CDS
CGTAGCAGAAGGAGTTCACA+GGG 0.625758 7_4:-63186991 Msa1170100:CDS
ATCTTAGAACATTCAGAGAG+CGG 0.626044 7_4:-63186551 Msa1170100:CDS
CGAGGGAACAATATCTATGG+TGG 0.626273 7_4:-63187654 Msa1170100:CDS
TCGAATTGTCTAATTACGGA+AGG 0.628393 7_4:-63190354 Msa1170100:CDS
TATATAGATTCATTGGTGTG+AGG 0.629591 7_4:-63185649 Msa1170100:three_prime_UTR
CTACCCCTCCACATTCTAGG+AGG 0.629863 7_4:+63186492 None:intergenic
ATAATGCCTCTCGTAGCAGA+AGG 0.629914 7_4:-63187002 Msa1170100:CDS
GCAGTGCTGGAATTTATAGT+GGG 0.639720 7_4:+63185811 None:intergenic
GCTTCTGGTCTTAGATCCCG+AGG 0.643614 7_4:-63187672 Msa1170100:CDS
AGTCATGAGACTGATGCGGA+AGG 0.646846 7_4:-63189660 Msa1170100:CDS
GATGGTCAAACTTGTCTAGG+TGG 0.647207 7_4:-63188833 Msa1170100:CDS
CTGGAAACCATTGTGAAATG+GGG 0.649696 7_4:+63189594 None:intergenic
TCCCCTCCTAGAATGTGGAG+GGG 0.656107 7_4:-63186495 Msa1170100:CDS
GCTAGAAGTCGTCTACGGAG+TGG 0.667710 7_4:-63186060 Msa1170100:CDS
AGACCAAAACGGTTATAACA+AGG 0.668823 7_4:+63190531 None:intergenic
TATATGCCAAAGAGATGGCG+TGG 0.670967 7_4:-63187617 Msa1170100:CDS
TTAATTGGAATGCTCAACAA+GGG 0.673370 7_4:-63189629 Msa1170100:CDS
ACAATGTTTAGCAGACCAAG+TGG 0.673800 7_4:-63190463 Msa1170100:CDS
TGGCAAAGAAATTACTGACG+TGG 0.676549 7_4:-63187597 Msa1170100:CDS
ATATAGTCATGAGACTGATG+CGG 0.679190 7_4:-63189664 Msa1170100:CDS
GGCTCCGTAATGCAAAATGT+GGG 0.679327 7_4:-63190111 Msa1170100:CDS
AGTACCAATCAAGAAGATAG+GGG 0.679475 7_4:+63186346 None:intergenic
CTTCTGGTCTTAGATCCCGA+GGG 0.679702 7_4:-63187671 Msa1170100:CDS
TGAACTCCTTCTGCTACGAG+AGG 0.680258 7_4:+63186996 None:intergenic
GCTACGAGAGGCATTATATG+GGG 0.685648 7_4:+63187008 None:intergenic
ATGCCAGCATGAATATGACA+AGG 0.687544 7_4:+63188916 None:intergenic
TCAACGCCAAAGTCCCAAAG+GGG 0.699074 7_4:+63190861 None:intergenic
ATAAGGTTTCAAATTCAATG+CGG 0.726994 7_4:+63187573 None:intergenic
ATACTCAAATGAGTATCACG+AGG 0.745566 7_4:-63186196 Msa1170100:CDS
CATGGGAACCAAATACTCAG+GGG 0.758921 7_4:-63186590 Msa1170100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTGGAAAATTTA+TGG - chr7_4:63188943-63188962 Msa1170100:CDS 10.0%
!!! TGATAATTTTTTTTTAGTAT+AGG - chr7_4:63188986-63189005 Msa1170100:CDS 10.0%
!! TGTAAATAAATAACAAATAA+CGG + chr7_4:63189923-63189942 None:intergenic 10.0%
!! TAAAATTCAAAACATATATA+TGG + chr7_4:63190545-63190564 None:intergenic 10.0%
!!! TTTTTTATACTTTTGTGAAA+TGG - chr7_4:63186489-63186508 Msa1170100:CDS 15.0%
!!! TTATTTTTCTGTTGTTTATT+TGG - chr7_4:63186755-63186774 Msa1170100:intron 15.0%
!!! TATTTTTCTGTTGTTTATTT+GGG - chr7_4:63186756-63186775 Msa1170100:intron 15.0%
!! GTAAGATTCTAATATTAATT+TGG - chr7_4:63186847-63186866 Msa1170100:intron 15.0%
!!! TTTTTTTACTATATGTTGAT+TGG - chr7_4:63187277-63187296 Msa1170100:intron 15.0%
!! ACACATTATTAAATATTAAC+AGG + chr7_4:63188021-63188040 None:intergenic 15.0%
!!! CTATTCATGAAAATTTTTAT+TGG - chr7_4:63188932-63188951 Msa1170100:CDS 15.0%
!! ATTTATGGAAATTACAATAA+AGG - chr7_4:63188958-63188977 Msa1170100:CDS 15.0%
!! TATTTATTTACACATAGAAT+AGG - chr7_4:63189931-63189950 Msa1170100:CDS 15.0%
!! CAAAATATTCATAATAGTAA+TGG + chr7_4:63190577-63190596 None:intergenic 15.0%
!!! TCCAAAAAAAATTATTTTAC+TGG + chr7_4:63190732-63190751 None:intergenic 15.0%
!! AATTAAACGAAAATACATAT+AGG + chr7_4:63190764-63190783 None:intergenic 15.0%
!! TTTATTATAAAGTTTGCGTT+CGG + chr7_4:63185623-63185642 None:intergenic 20.0%
!! TCATTGATATTCATATGATA+TGG + chr7_4:63185855-63185874 None:intergenic 20.0%
!! CATATGAATATCAATGATTT+CGG - chr7_4:63185858-63185877 Msa1170100:CDS 20.0%
!!! TAACTGAATTTGTTCTTTTT+TGG - chr7_4:63186160-63186179 Msa1170100:CDS 20.0%
!! TATACAAATACAATGATCTT+TGG - chr7_4:63186217-63186236 Msa1170100:CDS 20.0%
!!! TTGATTATTTTTGAACACTT+AGG - chr7_4:63186436-63186455 Msa1170100:CDS 20.0%
!! ATTTCACAAAATGGTTAAAA+GGG + chr7_4:63188082-63188101 None:intergenic 20.0%
!!! TTTTAACCATTTTGTGAAAT+CGG - chr7_4:63188082-63188101 Msa1170100:intron 20.0%
!! ATAAATTGCATCCTTATATA+AGG + chr7_4:63188158-63188177 None:intergenic 20.0%
!! TTTCAAATTTCATGTTATTC+TGG - chr7_4:63188199-63188218 Msa1170100:intron 20.0%
!! AATTTCATAGTTAGTTGTAT+AGG - chr7_4:63188231-63188250 Msa1170100:intron 20.0%
!!! GTTTATTTTCAGTACATAAT+TGG - chr7_4:63188774-63188793 Msa1170100:intron 20.0%
!!! TTATCAATAACTTGTGTTAT+AGG - chr7_4:63189371-63189390 Msa1170100:intron 20.0%
!!! AAATTCATATCTTTTGTATC+CGG - chr7_4:63189489-63189508 Msa1170100:CDS 20.0%
!! AAAATATCATTGCAGATATT+TGG - chr7_4:63189648-63189667 Msa1170100:CDS 20.0%
!! ACAATAAACAGAAGTAAATA+TGG + chr7_4:63190048-63190067 None:intergenic 20.0%
!! TACTTGGAGATTTATTTATA+TGG - chr7_4:63190085-63190104 Msa1170100:CDS 20.0%
!!! GCCAGTAAAATAATTTTTTT+TGG - chr7_4:63190728-63190747 Msa1170100:intron 20.0%
!! CATGATAATTATATGTTGTT+TGG + chr7_4:63191423-63191442 None:intergenic 20.0%
!! AAACTCTTTTCTTTACTTCA+AGG - chr7_4:63185805-63185824 Msa1170100:CDS 25.0%
! CATATGATATGGAAAAGAAA+GGG + chr7_4:63185844-63185863 None:intergenic 25.0%
! TCATATGATATGGAAAAGAA+AGG + chr7_4:63185845-63185864 None:intergenic 25.0%
! CAACTATCTTAACTATTCAT+TGG + chr7_4:63186310-63186329 None:intergenic 25.0%
! AGTTAAGATAGTTGAAAATG+CGG - chr7_4:63186316-63186335 Msa1170100:CDS 25.0%
!! ACATTTGAAGATGATGTTTT+AGG - chr7_4:63186522-63186541 Msa1170100:CDS 25.0%
!! TTTGAATATACTAAAAGCAC+CGG + chr7_4:63186980-63186999 None:intergenic 25.0%
!! GTGCTTTTAGTATATTCAAA+TGG - chr7_4:63186980-63186999 Msa1170100:CDS 25.0%
! ATATTCAAATGGAAACAGAA+AGG - chr7_4:63186991-63187010 Msa1170100:CDS 25.0%
!! AAAAAATCCTGAAAAGCATA+TGG + chr7_4:63187262-63187281 None:intergenic 25.0%
!! TTACTATATGTTGATTGGAA+TGG - chr7_4:63187282-63187301 Msa1170100:intron 25.0%
!! TACTATATGTTGATTGGAAT+GGG - chr7_4:63187283-63187302 Msa1170100:intron 25.0%
! TAAACAACTAAAATGCATTG+AGG - chr7_4:63187552-63187571 Msa1170100:intron 25.0%
!! AACAACTTTGTCAACAATTT+TGG + chr7_4:63187679-63187698 None:intergenic 25.0%
!! GTATGAATTATTGTCTTTTG+AGG - chr7_4:63188039-63188058 Msa1170100:intron 25.0%
! AAATGGTTAAAAGGGAAAAT+TGG + chr7_4:63188074-63188093 None:intergenic 25.0%
! GATTTCACAAAATGGTTAAA+AGG + chr7_4:63188083-63188102 None:intergenic 25.0%
! ATAAGGATGCAATTTATATC+TGG - chr7_4:63188161-63188180 Msa1170100:intron 25.0%
!! AGGTATCATATTCATTTTCT+TGG - chr7_4:63188624-63188643 Msa1170100:intron 25.0%
! GAAGAGAAAATGAAAGAAAA+TGG + chr7_4:63188654-63188673 None:intergenic 25.0%
! AACTGAATAAAATATGCACT+TGG + chr7_4:63188757-63188776 None:intergenic 25.0%
! AACTTCAAATCTTTCTTTCA+TGG + chr7_4:63188904-63188923 None:intergenic 25.0%
!!! CTTGCATATTTTTTTGAAAC+AGG - chr7_4:63189106-63189125 Msa1170100:intron 25.0%
! TGTAACATAGTTATTTGACT+TGG - chr7_4:63189164-63189183 Msa1170100:intron 25.0%
!! TAATTCTAAAAACGATAACC+AGG + chr7_4:63189316-63189335 None:intergenic 25.0%
! TTTGCAATGATAGATATGAT+AGG + chr7_4:63189471-63189490 None:intergenic 25.0%
! ATAAGGTTTCAAATTCAATG+CGG + chr7_4:63189845-63189864 None:intergenic 25.0%
!! CATAATGTGAATGTATTGAT+CGG + chr7_4:63189891-63189910 None:intergenic 25.0%
! TTCAACATTTACAGTGAAAT+CGG + chr7_4:63190186-63190205 None:intergenic 25.0%
! CTCATAAGACAAAATTCATT+AGG - chr7_4:63190496-63190515 Msa1170100:five_prime_UTR 25.0%
! TAAGACAAAATTCATTAGGA+AGG - chr7_4:63190500-63190519 Msa1170100:five_prime_UTR 25.0%
!!! GTGCATGCTTTTTAATTTTT+TGG - chr7_4:63190609-63190628 Msa1170100:intron 25.0%
! TTTGAGTATTCTTCATAGTT+GGG + chr7_4:63191208-63191227 None:intergenic 25.0%
! ATTTGAGTATTCTTCATAGT+TGG + chr7_4:63191209-63191228 None:intergenic 25.0%
!! GGAGAATTTAATCTACATTT+TGG - chr7_4:63191553-63191572 Msa1170100:intron 25.0%
! TTCCAAATAACAATTAGAGA+GGG + chr7_4:63191730-63191749 None:intergenic 25.0%
! TTTCCAAATAACAATTAGAG+AGG + chr7_4:63191731-63191750 None:intergenic 25.0%
!! TTTGCTGTATATAGATTCAT+TGG - chr7_4:63191759-63191778 Msa1170100:five_prime_UTR 25.0%
!! GATTTTTGTTTATAGTTGCG+TGG + chr7_4:63185714-63185733 None:intergenic 30.0%
! GTTTGCATATTTTGTAACGT+TGG - chr7_4:63186015-63186034 Msa1170100:CDS 30.0%
!!! CTTTTTTGGTCTGACATTTA+TGG - chr7_4:63186174-63186193 Msa1170100:CDS 30.0%
TGGAGCAATTATCATAACAT+GGG + chr7_4:63186368-63186387 None:intergenic 30.0%
ATGGAGCAATTATCATAACA+TGG + chr7_4:63186369-63186388 None:intergenic 30.0%
TGTTATGATAATTGCTCCAT+TGG - chr7_4:63186369-63186388 Msa1170100:CDS 30.0%
GTTATGATAATTGCTCCATT+GGG - chr7_4:63186370-63186389 Msa1170100:CDS 30.0%
ACAAATACACATTGCCAATT+TGG + chr7_4:63186401-63186420 None:intergenic 30.0%
AAAGTTTGAGAGAGAAAGTT+AGG + chr7_4:63186466-63186485 None:intergenic 30.0%
TCATTAACTGGTAGAAATCT+TGG - chr7_4:63186617-63186636 Msa1170100:intron 30.0%
GAAAAATAAAAGCGAAGACA+AGG + chr7_4:63186744-63186763 None:intergenic 30.0%
TTGCAAATTGCATTCCTATT+TGG + chr7_4:63186785-63186804 None:intergenic 30.0%
!! TTATAACCGTTTTGGTCTTT+GGG - chr7_4:63186889-63186908 Msa1170100:intron 30.0%
TAATTAGACAATTCGATCTC+CGG + chr7_4:63187057-63187076 None:intergenic 30.0%
GAGATCGAATTGTCTAATTA+CGG - chr7_4:63187057-63187076 Msa1170100:CDS 30.0%
! CTCTTCTTTGAAAGACTTTA+TGG - chr7_4:63187165-63187184 Msa1170100:intron 30.0%
TATGGTGTATTGTTACAAAG+TGG - chr7_4:63187208-63187227 Msa1170100:intron 30.0%
ATTGTTGAACTTCTAAGTCT+GGG - chr7_4:63187231-63187250 Msa1170100:CDS 30.0%
CTTACCAAAGCTATTATTGT+TGG - chr7_4:63187408-63187427 Msa1170100:CDS 30.0%
GTATCCAACAATAATAGCTT+TGG + chr7_4:63187415-63187434 None:intergenic 30.0%
AGCTATTATTGTTGGATACT+TGG - chr7_4:63187416-63187435 Msa1170100:CDS 30.0%
GCTATTATTGTTGGATACTT+GGG - chr7_4:63187417-63187436 Msa1170100:CDS 30.0%
CTATTATTGTTGGATACTTG+GGG - chr7_4:63187418-63187437 Msa1170100:CDS 30.0%
GAAACAAAACATCCAATAGA+AGG + chr7_4:63187451-63187470 None:intergenic 30.0%
TTGTTCTCGTTCAAAATACT+CGG - chr7_4:63187694-63187713 Msa1170100:CDS 30.0%
TTAATTGGAATGCTCAACAA+GGG - chr7_4:63187786-63187805 Msa1170100:intron 30.0%
! CCAATTTAAAGTCCATTCAA+GGG + chr7_4:63187910-63187929 None:intergenic 30.0%
! ACCAATTTAAAGTCCATTCA+AGG + chr7_4:63187911-63187930 None:intergenic 30.0%
! AACAAACCGATTTCACAAAA+TGG + chr7_4:63188091-63188110 None:intergenic 30.0%
TTGTTTGTTTGAAGGATAGA+AGG - chr7_4:63188110-63188129 Msa1170100:intron 30.0%
ATAGTTAGTTGTATAGGAGT+TGG - chr7_4:63188237-63188256 Msa1170100:intron 30.0%
GATTGACATATGTTGTGATT+TGG - chr7_4:63188300-63188319 Msa1170100:intron 30.0%
ATCCAAAGACATTACAGAAA+AGG - chr7_4:63188435-63188454 Msa1170100:intron 30.0%
!! GATTTTTAGGGAATACAATG+AGG - chr7_4:63188604-63188623 Msa1170100:intron 30.0%
!! ACATAGTATAGAAGTGTCTA+TGG + chr7_4:63188728-63188747 None:intergenic 30.0%
AGTTATCCAAAAACCTTTGA+TGG - chr7_4:63188812-63188831 Msa1170100:CDS 30.0%
TTATATACACAACCACTGAT+GGG + chr7_4:63188841-63188860 None:intergenic 30.0%
ATTATATACACAACCACTGA+TGG + chr7_4:63188842-63188861 None:intergenic 30.0%
CATGCATTCTCTGTTAATAT+CGG - chr7_4:63188867-63188886 Msa1170100:CDS 30.0%
ATTTATGAGTGACCACATTA+TGG - chr7_4:63189049-63189068 Msa1170100:intron 30.0%
ACTAGAATAACACCATAATG+TGG + chr7_4:63189064-63189083 None:intergenic 30.0%
CTTTCAAACAACATAAATGC+TGG + chr7_4:63189190-63189209 None:intergenic 30.0%
! GCTATTGTTTGGTAGTATAA+AGG + chr7_4:63189216-63189235 None:intergenic 30.0%
CACAAGTTATTGATAAGCTT+TGG + chr7_4:63189367-63189386 None:intergenic 30.0%
ATGATAGATATGATAGGTGT+AGG + chr7_4:63189465-63189484 None:intergenic 30.0%
ATCAACAGAAGTTCATTACA+TGG + chr7_4:63189572-63189591 None:intergenic 30.0%
TATCATTGCAGATATTTGGT+CGG - chr7_4:63189652-63189671 Msa1170100:CDS 30.0%
! TGAATTTGAAACCTTATTCC+AGG - chr7_4:63189848-63189867 Msa1170100:intron 30.0%
! TGCTCATGTTTTTCTTTGTA+TGG - chr7_4:63189969-63189988 Msa1170100:CDS 30.0%
GATTTCACTGTAAATGTTGA+AGG - chr7_4:63190185-63190204 Msa1170100:CDS 30.0%
! ATATTTTCTGCCATAAGCTA+TGG + chr7_4:63190312-63190331 None:intergenic 30.0%
ACAATGTTTATACTCTCAGT+TGG - chr7_4:63190648-63190667 Msa1170100:intron 30.0%
TAGTACCAATCAAGAAGATA+GGG + chr7_4:63191073-63191092 None:intergenic 30.0%
!! GTTATTCCATATGGTTCTAA+TGG + chr7_4:63191133-63191152 None:intergenic 30.0%
TAACGTTCTGTTATTCCATA+TGG + chr7_4:63191142-63191161 None:intergenic 30.0%
! ATGACAAGTTTTCTGATAGA+GGG - chr7_4:63191440-63191459 Msa1170100:intron 30.0%
AAACAAAAAATGTGGGAAAG+GGG + chr7_4:63191655-63191674 None:intergenic 30.0%
CAAACAAAAAATGTGGGAAA+GGG + chr7_4:63191656-63191675 None:intergenic 30.0%
TATATAGATTCATTGGTGTG+AGG - chr7_4:63191766-63191785 Msa1170100:five_prime_UTR 30.0%
TTATAAAGTTTGCGTTCGGA+AGG + chr7_4:63185619-63185638 None:intergenic 35.0%
! TTTGCACAGAAATTTTGCCT+CGG + chr7_4:63186259-63186278 None:intergenic 35.0%
! ACAACTTTTCTCTCATGATC+AGG - chr7_4:63186586-63186605 Msa1170100:CDS 35.0%
! TTTTCTCTCATGATCAGGTA+TGG - chr7_4:63186591-63186610 Msa1170100:CDS 35.0%
! CAGGTATGGTTTTCATTAAC+TGG - chr7_4:63186605-63186624 Msa1170100:CDS 35.0%
!! GTTTATTTGGGTTGCCAAAT+AGG - chr7_4:63186768-63186787 Msa1170100:intron 35.0%
!! GAACCTTGTTATAACCGTTT+TGG - chr7_4:63186881-63186900 Msa1170100:intron 35.0%
AGACCAAAACGGTTATAACA+AGG + chr7_4:63186887-63186906 None:intergenic 35.0%
!! GTTATAACCGTTTTGGTCTT+TGG - chr7_4:63186888-63186907 Msa1170100:intron 35.0%
!! TATAACCGTTTTGGTCTTTG+GGG - chr7_4:63186890-63186909 Msa1170100:intron 35.0%
TGTTCACAGACACTAATAGT+AGG + chr7_4:63186935-63186954 None:intergenic 35.0%
TTTACTTCATGATGATTCGC+CGG - chr7_4:63187035-63187054 Msa1170100:CDS 35.0%
TCGAATTGTCTAATTACGGA+AGG - chr7_4:63187061-63187080 Msa1170100:intron 35.0%
CATATACACTTTCTCCATTG+AGG + chr7_4:63187122-63187141 None:intergenic 35.0%
! TGTAGAACCAATTGCTGATT+TGG - chr7_4:63187140-63187159 Msa1170100:intron 35.0%
AAGAGATCCAAATCAGCAAT+TGG + chr7_4:63187150-63187169 None:intergenic 35.0%
TATGGTTACTACTGTGAGAA+AGG - chr7_4:63187183-63187202 Msa1170100:intron 35.0%
ATGGTTACTACTGTGAGAAA+GGG - chr7_4:63187184-63187203 Msa1170100:intron 35.0%
GATTGTTGAACTTCTAAGTC+TGG - chr7_4:63187230-63187249 Msa1170100:CDS 35.0%
TTGTTGAACTTCTAAGTCTG+GGG - chr7_4:63187232-63187251 Msa1170100:CDS 35.0%
!!! TGGGGATTTTTTCCTTCTAT+TGG - chr7_4:63187436-63187455 Msa1170100:intron 35.0%
AGACAAAAACATGTGAACTG+TGG + chr7_4:63187593-63187612 None:intergenic 35.0%
ATGAAATTCAAACTATGCCC+TGG - chr7_4:63187652-63187671 Msa1170100:CDS 35.0%
TGAAATTCAAACTATGCCCT+GGG - chr7_4:63187653-63187672 Msa1170100:CDS 35.0%
CAGTCTCATGACTATATCAT+GGG + chr7_4:63187748-63187767 None:intergenic 35.0%
TCAGTCTCATGACTATATCA+TGG + chr7_4:63187749-63187768 None:intergenic 35.0%
ATATAGTCATGAGACTGATG+CGG - chr7_4:63187751-63187770 Msa1170100:CDS 35.0%
CTTAATTGGAATGCTCAACA+AGG - chr7_4:63187785-63187804 Msa1170100:intron 35.0%
TCAGGACTAGATTGAACTTT+CGG + chr7_4:63187855-63187874 None:intergenic 35.0%
AAAGTTCAATCTAGTCCTGA+TGG - chr7_4:63187855-63187874 Msa1170100:intron 35.0%
! CCCTTGAATGGACTTTAAAT+TGG - chr7_4:63187907-63187926 Msa1170100:CDS 35.0%
TCCTACATAGCATGTTTGAT+CGG - chr7_4:63187934-63187953 Msa1170100:CDS 35.0%
CACTCTGATTGTACAACTAA+AGG + chr7_4:63187982-63188001 None:intergenic 35.0%
! CGGTTTGTTTGTTTGTTTGA+AGG - chr7_4:63188102-63188121 Msa1170100:intron 35.0%
! CATCCTTATATAAGGTACCA+TGG + chr7_4:63188150-63188169 None:intergenic 35.0%
GTAGCAAAAGTCATGTTCAA+AGG + chr7_4:63188381-63188400 None:intergenic 35.0%
! TTGAACATGACTTTTGCTAC+AGG - chr7_4:63188381-63188400 Msa1170100:intron 35.0%
! AGCCTTTTCTGTAATGTCTT+TGG + chr7_4:63188440-63188459 None:intergenic 35.0%
GACATTACAGAAAAGGCTTA+TGG - chr7_4:63188442-63188461 Msa1170100:intron 35.0%
AGAAAAGGCTTATGGTAGTT+GGG - chr7_4:63188450-63188469 Msa1170100:intron 35.0%
AGCATGAATATGACAAGGAA+TGG + chr7_4:63188497-63188516 None:intergenic 35.0%
ATTCCTTGTCATATTCATGC+TGG - chr7_4:63188496-63188515 Msa1170100:intron 35.0%
!! ACTTGTCTAGGTGGATTTTT+AGG - chr7_4:63188591-63188610 Msa1170100:intron 35.0%
!! CTTGTCTAGGTGGATTTTTA+GGG - chr7_4:63188592-63188611 Msa1170100:intron 35.0%
!!! CTTCTCTTTTGTTGCTTTCA+TGG - chr7_4:63188670-63188689 Msa1170100:intron 35.0%
TATCCAAAAACCTTTGATGG+AGG - chr7_4:63188815-63188834 Msa1170100:CDS 35.0%
ATTAACAGAGAATGCATGGA+TGG + chr7_4:63188865-63188884 None:intergenic 35.0%
CGATATTAACAGAGAATGCA+TGG + chr7_4:63188869-63188888 None:intergenic 35.0%
TTCTAGTCACCTAGCATTAA+CGG - chr7_4:63189077-63189096 Msa1170100:intron 35.0%
AAGAATAAGCCGTTAATGCT+AGG + chr7_4:63189089-63189108 None:intergenic 35.0%
AATGTCATATGCAACCTACA+TGG + chr7_4:63189238-63189257 None:intergenic 35.0%
! TTCATATCTTTTGTATCCGG+TGG - chr7_4:63189492-63189511 Msa1170100:CDS 35.0%
TTACCGAGTTCATAATGTCA+TGG - chr7_4:63189594-63189613 Msa1170100:CDS 35.0%
!! TATTTGGTCGGAACTTGTTT+TGG - chr7_4:63189664-63189683 Msa1170100:CDS 35.0%
!!! TTTTGGTATGCTGCTGTTTT+TGG - chr7_4:63189681-63189700 Msa1170100:CDS 35.0%
GAACTATAACTGCTATTAGC+CGG - chr7_4:63189703-63189722 Msa1170100:CDS 35.0%
AACTATAACTGCTATTAGCC+GGG - chr7_4:63189704-63189723 Msa1170100:CDS 35.0%
CACATTATATGCCAAAGAGA+TGG - chr7_4:63189793-63189812 Msa1170100:intron 35.0%
AAGAAAAACATGAGCACGAA+AGG + chr7_4:63189965-63189984 None:intergenic 35.0%
! TACAGCAATGATGTTACTTG+AGG - chr7_4:63189999-63190018 Msa1170100:CDS 35.0%
! AATGATGTTACTTGAGGAGA+TGG - chr7_4:63190005-63190024 Msa1170100:CDS 35.0%
ACAGAAGTAAATATGGAGTG+AGG + chr7_4:63190041-63190060 None:intergenic 35.0%
ACTTCTGTTTATTGTCCCAA+AGG - chr7_4:63190053-63190072 Msa1170100:CDS 35.0%
CAAGTACGAAAATGACCTTT+GGG + chr7_4:63190071-63190090 None:intergenic 35.0%
CTGTGAAATGCAGTATACTT+AGG + chr7_4:63190111-63190130 None:intergenic 35.0%
! ACTGTAAATGTTGAAGGTGT+TGG - chr7_4:63190191-63190210 Msa1170100:CDS 35.0%
!! CTGTAAATGTTGAAGGTGTT+GGG - chr7_4:63190192-63190211 Msa1170100:CDS 35.0%
GTACATCTGTAACATTCTCT+AGG - chr7_4:63190263-63190282 Msa1170100:CDS 35.0%
TGTCTCAATTCCATAGCTTA+TGG - chr7_4:63190299-63190318 Msa1170100:CDS 35.0%
!! ACCTTTGATTTTCAAGAGCA+TGG - chr7_4:63190367-63190386 Msa1170100:CDS 35.0%
TCCATGCTCTTGAAAATCAA+AGG + chr7_4:63190371-63190390 None:intergenic 35.0%
AGATGGAGAAATCATTGTTG+AGG - chr7_4:63190449-63190468 Msa1170100:CDS 35.0%
GAGAAATCATTGTTGAGGTA+TGG - chr7_4:63190454-63190473 Msa1170100:CDS 35.0%
TCTGAGAAAAGAGTTGACTA+TGG + chr7_4:63190700-63190719 None:intergenic 35.0%
TTCAGAGTAGTTATCCATCA+TGG - chr7_4:63190807-63190826 Msa1170100:intron 35.0%
TCAGAGTAGTTATCCATCAT+GGG - chr7_4:63190808-63190827 Msa1170100:intron 35.0%
ATCTTAGAACATTCAGAGAG+CGG - chr7_4:63190864-63190883 Msa1170100:five_prime_UTR 35.0%
ACAGAAACAGGTTTATATCC+AGG - chr7_4:63190969-63190988 Msa1170100:intron 35.0%
CAGAAACAGGTTTATATCCA+GGG - chr7_4:63190970-63190989 Msa1170100:intron 35.0%
AGTACCAATCAAGAAGATAG+GGG + chr7_4:63191072-63191091 None:intergenic 35.0%
GTAGTACCAATCAAGAAGAT+AGG + chr7_4:63191074-63191093 None:intergenic 35.0%
GATGTTCCATTAGAACCATA+TGG - chr7_4:63191124-63191143 Msa1170100:intron 35.0%
ATACTCAAATGAGTATCACG+AGG - chr7_4:63191219-63191238 Msa1170100:intron 35.0%
GTTGTTTGGTCATTGAAATC+TGG + chr7_4:63191409-63191428 None:intergenic 35.0%
! CATGACAAGTTTTCTGATAG+AGG - chr7_4:63191439-63191458 Msa1170100:intron 35.0%
! ACCAAGAACAACACTTTTAC+TGG - chr7_4:63191476-63191495 Msa1170100:intron 35.0%
!! TCCAGTAAAAGTGTTGTTCT+TGG + chr7_4:63191480-63191499 None:intergenic 35.0%
AACAATGACAGATGACTTAG+AGG - chr7_4:63191528-63191547 Msa1170100:intron 35.0%
! GAATTTATAGTGGGAGTTTC+TGG + chr7_4:63191598-63191617 None:intergenic 35.0%
CCAAACAAAAAATGTGGGAA+AGG + chr7_4:63191657-63191676 None:intergenic 35.0%
!!! CCTTTCCCACATTTTTTGTT+TGG - chr7_4:63191654-63191673 Msa1170100:five_prime_UTR 35.0%
!!! TCCCACATTTTTTGTTTGGA+AGG - chr7_4:63191658-63191677 Msa1170100:five_prime_UTR 35.0%
CCCTTCCAAACAAAAAATGT+GGG + chr7_4:63191662-63191681 None:intergenic 35.0%
!!! CCCACATTTTTTGTTTGGAA+GGG - chr7_4:63191659-63191678 Msa1170100:five_prime_UTR 35.0%
ACCCTTCCAAACAAAAAATG+TGG + chr7_4:63191663-63191682 None:intergenic 35.0%
!! GAAGGGTGCTTTCAATTAAA+TGG - chr7_4:63191676-63191695 Msa1170100:five_prime_UTR 35.0%
! GTCCCTCTCTAATTGTTATT+TGG - chr7_4:63191725-63191744 Msa1170100:five_prime_UTR 35.0%
TCCTTACATCTGAAAATGGA+AGG + chr7_4:63191849-63191868 None:intergenic 35.0%
! AGGAGATGAGCATAGGTTTT+TGG + chr7_4:63185599-63185618 None:intergenic 40.0%
AGATGATGAAACAGTAGCGA+AGG + chr7_4:63185783-63185802 None:intergenic 40.0%
GAGACACAAATACAGAAACG+TGG + chr7_4:63185909-63185928 None:intergenic 40.0%
GATTATTATCGTTGTCGACG+AGG + chr7_4:63186058-63186077 None:intergenic 40.0%
! TCCATTGGGTTGTTCCAAAT+TGG - chr7_4:63186384-63186403 Msa1170100:CDS 40.0%
CAAATATGGGCAACTTGACA+AGG + chr7_4:63186707-63186726 None:intergenic 40.0%
! CTTGTCAAGTTGCCCATATT+TGG - chr7_4:63186705-63186724 Msa1170100:intron 40.0%
ATGAATCGCCAGCCAAATAT+GGG + chr7_4:63186720-63186739 None:intergenic 40.0%
TATGAATCGCCAGCCAAATA+TGG + chr7_4:63186721-63186740 None:intergenic 40.0%
ACAATGTTTAGCAGACCAAG+TGG - chr7_4:63186952-63186971 Msa1170100:intron 40.0%
CTCCATTGAGGAAATCTGAA+GGG + chr7_4:63187110-63187129 None:intergenic 40.0%
TCTCCATTGAGGAAATCTGA+AGG + chr7_4:63187111-63187130 None:intergenic 40.0%
ACTACTGTGAGAAAGGGTTA+TGG - chr7_4:63187190-63187209 Msa1170100:intron 40.0%
! CCATCCCACATTTTGCATTA+CGG + chr7_4:63187311-63187330 None:intergenic 40.0%
TAAGTGTGAGTGGGGTTAAA+GGG + chr7_4:63187392-63187411 None:intergenic 40.0%
!! TAGCTTTGGTAAGTGTGAGT+GGG + chr7_4:63187401-63187420 None:intergenic 40.0%
!! ATAGCTTTGGTAAGTGTGAG+TGG + chr7_4:63187402-63187421 None:intergenic 40.0%
TTAGTTGAGCAAAGAATCGC+AGG + chr7_4:63187473-63187492 None:intergenic 40.0%
GCGATTCTTTGCTCAACTAA+AGG - chr7_4:63187473-63187492 Msa1170100:intron 40.0%
CTTACCTGCTGTAGAAAAAC+TGG + chr7_4:63187515-63187534 None:intergenic 40.0%
CTAAAATGCATTGAGGCAGT+TGG - chr7_4:63187559-63187578 Msa1170100:intron 40.0%
!! TTGTCAACAATTTTGGCCCA+GGG + chr7_4:63187672-63187691 None:intergenic 40.0%
!! TTTGTCAACAATTTTGGCCC+AGG + chr7_4:63187673-63187692 None:intergenic 40.0%
CGGAAGGAGAACTACTTAAT+TGG - chr7_4:63187771-63187790 Msa1170100:intron 40.0%
TTGCTTTCCCCATTTCACAA+TGG - chr7_4:63187814-63187833 Msa1170100:intron 40.0%
CTGGAAACCATTGTGAAATG+GGG + chr7_4:63187824-63187843 None:intergenic 40.0%
CCTGGAAACCATTGTGAAAT+GGG + chr7_4:63187825-63187844 None:intergenic 40.0%
ACCTGGAAACCATTGTGAAA+TGG + chr7_4:63187826-63187845 None:intergenic 40.0%
CAGGACTAGATTGAACTTTC+GGG + chr7_4:63187854-63187873 None:intergenic 40.0%
AAACGATATTGTGCTCCATC+AGG + chr7_4:63187873-63187892 None:intergenic 40.0%
TACTTACCAAGACCCTTGAA+TGG - chr7_4:63187895-63187914 Msa1170100:CDS 40.0%
TAAAGTCCATTCAAGGGTCT+TGG + chr7_4:63187904-63187923 None:intergenic 40.0%
ACCGATCAAACATGCTATGT+AGG + chr7_4:63187938-63187957 None:intergenic 40.0%
AGGACTATTTAGATGCTCCA+TGG - chr7_4:63188130-63188149 Msa1170100:intron 40.0%
GCTCCATGGTACCTTATATA+AGG - chr7_4:63188144-63188163 Msa1170100:intron 40.0%
! ACAGGAACTTTTGTGTCAGA+AGG - chr7_4:63188399-63188418 Msa1170100:intron 40.0%
! CAGGAACTTTTGTGTCAGAA+GGG - chr7_4:63188400-63188419 Msa1170100:intron 40.0%
CAGAAAAGGCTTATGGTAGT+TGG - chr7_4:63188449-63188468 Msa1170100:intron 40.0%
ATGCCAGCATGAATATGACA+AGG + chr7_4:63188502-63188521 None:intergenic 40.0%
GAAGATGGTCAAACTTGTCT+AGG - chr7_4:63188579-63188598 Msa1170100:intron 40.0%
CTACCAAACAATAGCCATGT+AGG - chr7_4:63189221-63189240 Msa1170100:intron 40.0%
CAACCTACATGGCTATTGTT+TGG + chr7_4:63189227-63189246 None:intergenic 40.0%
TATATGTCTTCTGCTGTACC+TGG - chr7_4:63189295-63189314 Msa1170100:intron 40.0%
CTGCCATGACATTATGAACT+CGG + chr7_4:63189600-63189619 None:intergenic 40.0%
AATGTCATGGCAGTCGTTAA+AGG - chr7_4:63189607-63189626 Msa1170100:CDS 40.0%
ACCATAGATATTGTTCCCTC+GGG + chr7_4:63189762-63189781 None:intergenic 40.0%
CACCATAGATATTGTTCCCT+CGG + chr7_4:63189763-63189782 None:intergenic 40.0%
TGGCAAAGAAATTACTGACG+TGG - chr7_4:63189818-63189837 Msa1170100:intron 40.0%
TTATTCCAGGTATTCTGCCT+GGG - chr7_4:63189861-63189880 Msa1170100:intron 40.0%
CCAAGTACGAAAATGACCTT+TGG + chr7_4:63190072-63190091 None:intergenic 40.0%
!! CCAAAGGTCATTTTCGTACT+TGG - chr7_4:63190069-63190088 Msa1170100:CDS 40.0%
GAGCATGGAAACTCTCATTA+TGG - chr7_4:63190382-63190401 Msa1170100:CDS 40.0%
!! TGCTACGAGAGGCATTATAT+GGG + chr7_4:63190411-63190430 None:intergenic 40.0%
TCATTGTTGAGGTATGGTCT+TGG - chr7_4:63190460-63190479 Msa1170100:CDS 40.0%
! TAAAAAGCATGCACACACAG+AGG + chr7_4:63190603-63190622 None:intergenic 40.0%
! TGAGTATTTGGTTCCCATGA+TGG + chr7_4:63190824-63190843 None:intergenic 40.0%
ATCATGGGAACCAAATACTC+AGG - chr7_4:63190823-63190842 Msa1170100:intron 40.0%
TCATGGGAACCAAATACTCA+GGG - chr7_4:63190824-63190843 Msa1170100:intron 40.0%
! TTTTGCAACTGGCAATCACT+TGG - chr7_4:63191009-63191028 Msa1170100:intron 40.0%
ATAGGGGTGATTATTCTGGT+TGG + chr7_4:63191056-63191075 None:intergenic 40.0%
GAAGATAGGGGTGATTATTC+TGG + chr7_4:63191060-63191079 None:intergenic 40.0%
ATCACCCCTATCTTCTTGAT+TGG - chr7_4:63191065-63191084 Msa1170100:intron 40.0%
!! TCATTCTGTGTCAAGTTGGA+AGG + chr7_4:63191184-63191203 None:intergenic 40.0%
CAAATGAGTATCACGAGGAT+CGG - chr7_4:63191224-63191243 Msa1170100:intron 40.0%
AAATGAGTATCACGAGGATC+GGG - chr7_4:63191225-63191244 Msa1170100:intron 40.0%
GTTTGGTCATTGAAATCTGG+AGG + chr7_4:63191406-63191425 None:intergenic 40.0%
! TTTATAGTGGGAGTTTCTGG+AGG + chr7_4:63191595-63191614 None:intergenic 40.0%
! GCAGTGCTGGAATTTATAGT+GGG + chr7_4:63191607-63191626 None:intergenic 40.0%
! AGCAGTGCTGGAATTTATAG+TGG + chr7_4:63191608-63191627 None:intergenic 40.0%
TATGAACCTCAGCTTGATGT+TGG - chr7_4:63191800-63191819 Msa1170100:five_prime_UTR 40.0%
TAAGTTCCAACATCAAGCTG+AGG + chr7_4:63191809-63191828 None:intergenic 40.0%
! GCCTTCCATTTTCAGATGTA+AGG - chr7_4:63191845-63191864 Msa1170100:five_prime_UTR 40.0%
GATGAAACAGTAGCGAAGGA+AGG + chr7_4:63185779-63185798 None:intergenic 45.0%
GAATTGAAGTTAGCAGTCCG+AGG - chr7_4:63186239-63186258 Msa1170100:CDS 45.0%
! GCCAATTTGGAACAACCCAA+TGG + chr7_4:63186388-63186407 None:intergenic 45.0%
! TCAAGTTGCCCATATTTGGC+TGG - chr7_4:63186709-63186728 Msa1170100:intron 45.0%
CCATTCCCCAAAGACCAAAA+CGG + chr7_4:63186898-63186917 None:intergenic 45.0%
! TTGGTCTTTGGGGAATGGAT+TGG - chr7_4:63186900-63186919 Msa1170100:intron 45.0%
TTTAGCAGACCAAGTGGTTC+CGG - chr7_4:63186958-63186977 Msa1170100:intron 45.0%
AGCCCTTCAGATTTCCTCAA+TGG - chr7_4:63187105-63187124 Msa1170100:intron 45.0%
! GGGTTCACCATATGCTTTTC+AGG - chr7_4:63187252-63187271 Msa1170100:CDS 45.0%
GGCTCCGTAATGCAAAATGT+GGG - chr7_4:63187304-63187323 Msa1170100:intron 45.0%
CCGTAATGCAAAATGTGGGA+TGG - chr7_4:63187308-63187327 Msa1170100:intron 45.0%
GGAATTAAGCCCTGTGATCT+TGG - chr7_4:63187345-63187364 Msa1170100:intron 45.0%
GCTTCTTTGCCAAGATCACA+GGG + chr7_4:63187357-63187376 None:intergenic 45.0%
AGCTTCTTTGCCAAGATCAC+AGG + chr7_4:63187358-63187377 None:intergenic 45.0%
GTAAGTGTGAGTGGGGTTAA+AGG + chr7_4:63187393-63187412 None:intergenic 45.0%
! AGCTTTGGTAAGTGTGAGTG+GGG + chr7_4:63187400-63187419 None:intergenic 45.0%
! TACGCCAGTTTTTCTACAGC+AGG - chr7_4:63187508-63187527 Msa1170100:intron 45.0%
TCGGAAACTATGTGTGCTGA+AGG - chr7_4:63187713-63187732 Msa1170100:CDS 45.0%
CCCATTTCACAATGGTTTCC+AGG - chr7_4:63187822-63187841 Msa1170100:intron 45.0%
TGCTGGCATATCTCTTTCTG+AGG - chr7_4:63188513-63188532 Msa1170100:intron 45.0%
TTCGAGATGATGCTGTGCTT+GGG + chr7_4:63188562-63188581 None:intergenic 45.0%
GATGGTCAAACTTGTCTAGG+TGG - chr7_4:63188582-63188601 Msa1170100:intron 45.0%
TATAGGTCGACCATCTCTTC+AGG - chr7_4:63189388-63189407 Msa1170100:intron 45.0%
TAATCCGATGCCTGAAGAGA+TGG + chr7_4:63189401-63189420 None:intergenic 45.0%
TGCAATTGCAGATGAGCTTC+TGG - chr7_4:63189728-63189747 Msa1170100:CDS 45.0%
TCCCGAGGGAACAATATCTA+TGG - chr7_4:63189758-63189777 Msa1170100:CDS 45.0%
CGAGGGAACAATATCTATGG+TGG - chr7_4:63189761-63189780 Msa1170100:CDS 45.0%
TATATGCCAAAGAGATGGCG+TGG - chr7_4:63189798-63189817 Msa1170100:intron 45.0%
CAGGCAGAATACCTGGAATA+AGG + chr7_4:63189862-63189881 None:intergenic 45.0%
CTTATTCCAGGTATTCTGCC+TGG - chr7_4:63189860-63189879 Msa1170100:intron 45.0%
TATTCCAGGTATTCTGCCTG+GGG - chr7_4:63189862-63189881 Msa1170100:intron 45.0%
!! GCTACGAGAGGCATTATATG+GGG + chr7_4:63190410-63190429 None:intergenic 45.0%
!! CTGCTACGAGAGGCATTATA+TGG + chr7_4:63190412-63190431 None:intergenic 45.0%
ATAATGCCTCTCGTAGCAGA+AGG - chr7_4:63190413-63190432 Msa1170100:CDS 45.0%
AAGGAGTTCACAGGGAAAGA+TGG - chr7_4:63190432-63190451 Msa1170100:CDS 45.0%
CATGGGAACCAAATACTCAG+GGG - chr7_4:63190825-63190844 Msa1170100:intron 45.0%
AACTGCTTCCCCTGAGTATT+TGG + chr7_4:63190836-63190855 None:intergenic 45.0%
GAGCGGAAGTTATCAGTACA+TGG - chr7_4:63190881-63190900 Msa1170100:intron 45.0%
!! CCAGTTGCAAAAGTGCTGTA+TGG + chr7_4:63191001-63191020 None:intergenic 45.0%
! CCATACAGCACTTTTGCAAC+TGG - chr7_4:63190998-63191017 Msa1170100:intron 45.0%
GCAATCACTTGGATTCGTTG+TGG - chr7_4:63191020-63191039 Msa1170100:intron 45.0%
TCTCTTGAAGCTGCATCATG+AGG + chr7_4:63191106-63191125 None:intergenic 45.0%
GGGTTCATTCTGTGTCAAGT+TGG + chr7_4:63191188-63191207 None:intergenic 45.0%
CTAAAGCTCTCCCTAAGGAT+GGG + chr7_4:63191283-63191302 None:intergenic 45.0%
ACTAAAGCTCTCCCTAAGGA+TGG + chr7_4:63191284-63191303 None:intergenic 45.0%
! GTTTTCTGATAGAGGGTCAG+AGG - chr7_4:63191447-63191466 Msa1170100:intron 45.0%
ATGACAGATGACTTAGAGGC+AGG - chr7_4:63191532-63191551 Msa1170100:intron 45.0%
TACTCAAAAGCTAGCAGTGC+TGG + chr7_4:63191620-63191639 None:intergenic 45.0%
AGAGAGGGACAATCATGACT+TGG + chr7_4:63191715-63191734 None:intergenic 45.0%
GGGGTCCTTACATCTGAAAA+TGG + chr7_4:63191853-63191872 None:intergenic 45.0%
GTTCGGAAGGAGATGAGCAT+AGG + chr7_4:63185606-63185625 None:intergenic 50.0%
TCAACGCCAAAGTCCCAAAG+GGG + chr7_4:63186557-63186576 None:intergenic 50.0%
GTCAACGCCAAAGTCCCAAA+GGG + chr7_4:63186558-63186577 None:intergenic 50.0%
TGTCAACGCCAAAGTCCCAA+AGG + chr7_4:63186559-63186578 None:intergenic 50.0%
!! CCGTTTTGGTCTTTGGGGAA+TGG - chr7_4:63186895-63186914 Msa1170100:intron 50.0%
!! CTAAAAGCACCGGAACCACT+TGG + chr7_4:63186970-63186989 None:intergenic 50.0%
GGGCTCCGTAATGCAAAATG+TGG - chr7_4:63187303-63187322 Msa1170100:intron 50.0%
GGGATGGATGCTGTTGAATC+TGG - chr7_4:63187324-63187343 Msa1170100:intron 50.0%
AGTCATGAGACTGATGCGGA+AGG - chr7_4:63187755-63187774 Msa1170100:CDS 50.0%
TCACAATGGTTTCCAGGTGC+TGG - chr7_4:63187828-63187847 Msa1170100:intron 50.0%
CTTCGAGATGATGCTGTGCT+TGG + chr7_4:63188563-63188582 None:intergenic 50.0%
GCACAGCATCATCTCGAAGA+TGG - chr7_4:63188564-63188583 Msa1170100:intron 50.0%
! GGGCCTCCATCAAAGGTTTT+TGG + chr7_4:63188821-63188840 None:intergenic 50.0%
TCGACCATCTCTTCAGGCAT+CGG - chr7_4:63189394-63189413 Msa1170100:intron 50.0%
CAGAATTGCAGCAAAGCCAC+CGG + chr7_4:63189511-63189530 None:intergenic 50.0%
!! CTTCTGGTCTTAGATCCCGA+GGG - chr7_4:63189744-63189763 Msa1170100:CDS 50.0%
TCTTTGCCACGCCATCTCTT+TGG + chr7_4:63189807-63189826 None:intergenic 50.0%
! ATGTATTGATCGGACACCCC+AGG + chr7_4:63189881-63189900 None:intergenic 50.0%
!! AAGGTGTTGGGCATGTTTGC+AGG - chr7_4:63190204-63190223 Msa1170100:CDS 50.0%
GGCATGTTTGCAGGTTAGCA+TGG - chr7_4:63190213-63190232 Msa1170100:CDS 50.0%
TGAACTCCTTCTGCTACGAG+AGG + chr7_4:63190422-63190441 None:intergenic 50.0%
TCGTAGCAGAAGGAGTTCAC+AGG - chr7_4:63190423-63190442 Msa1170100:CDS 50.0%
CGTAGCAGAAGGAGTTCACA+GGG - chr7_4:63190424-63190443 Msa1170100:CDS 50.0%
CATCTTCCCCTCCTAGAATG+TGG - chr7_4:63190915-63190934 Msa1170100:intron 50.0%
TTCCCCTCCTAGAATGTGGA+GGG - chr7_4:63190919-63190938 Msa1170100:intron 50.0%
! TACCCCTCCACATTCTAGGA+GGG + chr7_4:63190925-63190944 None:intergenic 50.0%
TCTTCATCCCCTGCCGTATT+GGG + chr7_4:63190950-63190969 None:intergenic 50.0%
CAGGGGATGAAGACAGAAAC+AGG - chr7_4:63190957-63190976 Msa1170100:intron 50.0%
AGTGCTGTATGGCATTTCCC+TGG + chr7_4:63190990-63191009 None:intergenic 50.0%
!! GGAAGGCATCGAATAGTCTC+TGG + chr7_4:63191167-63191186 None:intergenic 50.0%
ATCGGGCTGCATCTCAACTT+GGG - chr7_4:63191242-63191261 Msa1170100:intron 50.0%
CTCATCAGCTCCCATCCTTA+GGG - chr7_4:63191270-63191289 Msa1170100:intron 50.0%
CCTGACTAAAGCTCTCCCTA+AGG + chr7_4:63191288-63191307 None:intergenic 50.0%
! CCTTAGGGAGAGCTTTAGTC+AGG - chr7_4:63191285-63191304 Msa1170100:intron 50.0%
TTCTAGCCCACCAATGGCTT+CGG + chr7_4:63191342-63191361 None:intergenic 50.0%
AGGACCCCAGCAAAATAGTC+TGG - chr7_4:63191865-63191884 Msa1170100:five_prime_UTR 50.0%
TTAGGTTCAGCTCGCCCCTT+TGG - chr7_4:63186540-63186559 Msa1170100:CDS 55.0%
TAGGTTCAGCTCGCCCCTTT+GGG - chr7_4:63186541-63186560 Msa1170100:CDS 55.0%
GGCGCGTCATCTTTGACTAG+AGG - chr7_4:63187012-63187031 Msa1170100:CDS 55.0%
TACGGAAGGATCCCAAGTCC+AGG - chr7_4:63187075-63187094 Msa1170100:intron 55.0%
GGCTCTCACTTCCTGGACTT+GGG + chr7_4:63187089-63187108 None:intergenic 55.0%
TCTGAAGGGCTCTCACTTCC+TGG + chr7_4:63187096-63187115 None:intergenic 55.0%
! CACTGATGGGCCTCCATCAA+AGG + chr7_4:63188828-63188847 None:intergenic 55.0%
CTTTGATGGAGGCCCATCAG+TGG - chr7_4:63188826-63188845 Msa1170100:CDS 55.0%
GCTCATCTGCAATTGCAGCC+CGG + chr7_4:63189725-63189744 None:intergenic 55.0%
!! GCTTCTGGTCTTAGATCCCG+AGG - chr7_4:63189743-63189762 Msa1170100:CDS 55.0%
CTTCCCCTCCTAGAATGTGG+AGG - chr7_4:63190918-63190937 Msa1170100:intron 55.0%
TCCCCTCCTAGAATGTGGAG+GGG - chr7_4:63190920-63190939 Msa1170100:intron 55.0%
! ACCCCTCCACATTCTAGGAG+GGG + chr7_4:63190924-63190943 None:intergenic 55.0%
CTACCCCTCCACATTCTAGG+AGG + chr7_4:63190926-63190945 None:intergenic 55.0%
GGACTACCCCTCCACATTCT+AGG + chr7_4:63190929-63190948 None:intergenic 55.0%
GTGGAGGGGTAGTCCCAATA+CGG - chr7_4:63190934-63190953 Msa1170100:intron 55.0%
GTCTTCATCCCCTGCCGTAT+TGG + chr7_4:63190951-63190970 None:intergenic 55.0%
GATCGGGCTGCATCTCAACT+TGG - chr7_4:63191241-63191260 Msa1170100:intron 55.0%
TCGGGCTGCATCTCAACTTG+GGG - chr7_4:63191243-63191262 Msa1170100:intron 55.0%
CCTAAGGATGGGAGCTGATG+AGG + chr7_4:63191272-63191291 None:intergenic 55.0%
CCTCATCAGCTCCCATCCTT+AGG - chr7_4:63191269-63191288 Msa1170100:intron 55.0%
TCTAGCCCACCAATGGCTTC+GGG + chr7_4:63191341-63191360 None:intergenic 55.0%
GACGACTTCTAGCCCACCAA+TGG + chr7_4:63191348-63191367 None:intergenic 55.0%
!! GGTGGGCTAGAAGTCGTCTA+CGG - chr7_4:63191350-63191369 Msa1170100:intron 55.0%
GCTAGAAGTCGTCTACGGAG+TGG - chr7_4:63191355-63191374 Msa1170100:intron 55.0%
TCTACGGAGTGGACAAGCTC+AGG - chr7_4:63191366-63191385 Msa1170100:intron 55.0%
!! AGCTCGCCCCTTTGGGACTT+TGG - chr7_4:63186548-63186567 Msa1170100:CDS 60.0%
GGGCTCTCACTTCCTGGACT+TGG + chr7_4:63187090-63187109 None:intergenic 60.0%
TGAACTTTCGGGCCAGCACC+TGG + chr7_4:63187843-63187862 None:intergenic 60.0%
GACACCCCAGGCAGAATACC+TGG + chr7_4:63189869-63189888 None:intergenic 60.0%
AGGGGTAGTCCCAATACGGC+AGG - chr7_4:63190938-63190957 Msa1170100:intron 60.0%
GGGGTAGTCCCAATACGGCA+GGG - chr7_4:63190939-63190958 Msa1170100:intron 60.0%
GGGTAGTCCCAATACGGCAG+GGG - chr7_4:63190940-63190959 Msa1170100:intron 60.0%
!! CAATGGCTTCGGGTTGCGTG+GGG + chr7_4:63191331-63191350 None:intergenic 60.0%
!! CCAATGGCTTCGGGTTGCGT+GGG + chr7_4:63191332-63191351 None:intergenic 60.0%
!! ACCAATGGCTTCGGGTTGCG+TGG + chr7_4:63191333-63191352 None:intergenic 60.0%
ACGCAACCCGAAGCCATTGG+TGG - chr7_4:63191332-63191351 Msa1170100:intron 60.0%
CGCAACCCGAAGCCATTGGT+GGG - chr7_4:63191333-63191352 Msa1170100:intron 60.0%
CCCACGCAACCCGAAGCCAT+TGG - chr7_4:63191329-63191348 Msa1170100:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 63185549 63191888 63185549 ID=Msa1170100;Name=Msa1170100
chr7_4 mRNA 63185549 63191888 63185549 ID=Msa1170100-mRNA-1;Parent=Msa1170100;Name=Msa1170100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=415|1|1|1|0.8|0.72|11|252|865
chr7_4 exon 63185549 63186632 63185549 ID=Msa1170100-mRNA-1:exon:20202;Parent=Msa1170100-mRNA-1
chr7_4 exon 63186967 63187077 63186967 ID=Msa1170100-mRNA-1:exon:20201;Parent=Msa1170100-mRNA-1
chr7_4 exon 63187212 63187282 63187212 ID=Msa1170100-mRNA-1:exon:20200;Parent=Msa1170100-mRNA-1
chr7_4 exon 63187363 63187440 63187363 ID=Msa1170100-mRNA-1:exon:20199;Parent=Msa1170100-mRNA-1
chr7_4 exon 63187568 63187774 63187568 ID=Msa1170100-mRNA-1:exon:20198;Parent=Msa1170100-mRNA-1
chr7_4 exon 63187865 63188044 63187865 ID=Msa1170100-mRNA-1:exon:20197;Parent=Msa1170100-mRNA-1
chr7_4 exon 63188812 63189034 63188812 ID=Msa1170100-mRNA-1:exon:20196;Parent=Msa1170100-mRNA-1
chr7_4 exon 63189482 63189802 63189482 ID=Msa1170100-mRNA-1:exon:20195;Parent=Msa1170100-mRNA-1
chr7_4 exon 63189908 63190555 63189908 ID=Msa1170100-mRNA-1:exon:20194;Parent=Msa1170100-mRNA-1
chr7_4 exon 63190830 63190893 63190830 ID=Msa1170100-mRNA-1:exon:20193;Parent=Msa1170100-mRNA-1
chr7_4 exon 63191611 63191888 63191611 ID=Msa1170100-mRNA-1:exon:20192;Parent=Msa1170100-mRNA-1
chr7_4 five_prime_UTR 63191611 63191888 63191611 ID=Msa1170100-mRNA-1:five_prime_utr;Parent=Msa1170100-mRNA-1
chr7_4 five_prime_UTR 63190830 63190893 63190830 ID=Msa1170100-mRNA-1:five_prime_utr;Parent=Msa1170100-mRNA-1
chr7_4 five_prime_UTR 63190483 63190555 63190483 ID=Msa1170100-mRNA-1:five_prime_utr;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63189908 63190482 63189908 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63189482 63189802 63189482 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63188812 63189034 63188812 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63187865 63188044 63187865 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63187568 63187774 63187568 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63187363 63187440 63187363 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63187212 63187282 63187212 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63186967 63187077 63186967 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 CDS 63185801 63186632 63185801 ID=Msa1170100-mRNA-1:cds;Parent=Msa1170100-mRNA-1
chr7_4 three_prime_UTR 63185549 63185800 63185549 ID=Msa1170100-mRNA-1:three_prime_utr;Parent=Msa1170100-mRNA-1
Gene Sequence

>Msa1170100

ATGTTTAGCAGACCAAGTGGTTCCGGTGCTTTTAGTATATTCAAATGGAAACAGAAAGGCGCGTCATCTTTGACTAGAGGTTTACTTCATGATGATTCGCCGGAGATCGAATTGTCTAATTACGGAAGGATCCCAAGTCCAGGAAGTGAGAGCCCTTCAGATTTCCTCAATGGAGAAAGTGTATATGTAGAACCAATTGCTGATTTGGATCTCTTCTTTGAAAGACTTTATGGTTACTACTGTGAGAAAGGGTTATGGTGTATTGTTACAAAGTGGATTGTTGAACTTCTAAGTCTGGGGTTCACCATATGCTTTTCAGGATTTTTTTTACTATATGTTGATTGGAATGGGCTCCGTAATGCAAAATGTGGGATGGATGCTGTTGAATCTGGAATTAAGCCCTGTGATCTTGGCAAAGAAGCTCTTAATCAACACCCTTTAACCCCACTCACACTTACCAAAGCTATTATTGTTGGATACTTGGGGATTTTTTCCTTCTATTGGATGTTTTGTTTCCTGCGATTCTTTGCTCAACTAAAGGATATTCTCGAAATACGCCAGTTTTTCTACAGCAGTCTTCATGTCACTGACAATGAAATTCAAACTATGCCCTGGGCCAAAATTGTTGACAAAGTTGTTCTCGTTCAAAATACTCGGAAACTATGTGTGCTGAAGGATCTTTCTGCCCATGATATAGTCATGAGACTGATGCGGAAGGAGAACTACTTAATTGGAATGCTCAACAAGGGTGTGCTTGCTTTCCCCATTTCACAATGGTTTCCAGGTGCTGGCCCGAAAGTTCAATCTAGTCCTGATGGAGCACAATATCGTTTAGTACTTACCAAGACCCTTGAATGGACTTTAAATTGGTGCATCCTACATAGCATGTTTGATCGGAACTTTTGTGTCAGAAGGGATTTTGTGTCAAATCCAAAGACATTACAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTTTCTCCATTCCTTGTCATATTCATGCTGGCATATCTCTTTCTGAGGCATGCTGAGCAATTTTATAATCACCCAAGCACAGCATCATCTCGAAGATGGTCAAACTTGTCTAGGTGGATTTTTAGGGAATACAATGAGGTCGACCATCTCTTCAGGCATCGGATTAATAACAGTGTATCACATGCTTCTGATTATCTCAAGCAGTTTCCTACACCTATCATATCTATCATTGCAAAATTCATATCTTTTGTATCCGGTGGCTTTGCTGCAATTCTGATCATTATTGCTTTTCTCGAGGAGTCTCTGCTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACTGCTATTAGCCGGGCTGCAATTGCAGATGAGCTTCTGGTCTTAGATCCCGAGGGAACAATATCTATGGTGGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAATTACTGACGTGGTCCGCATTGAATTTGAAACCTTATTCCAGTATACAGCAATGATGTTACTTGAGGAGATGGCTTCAATTTTCCTCACTCCATATTTACTTCTGTTTATTGTCCCAAAGCGAGTTGATGATATCTTGCAGTACATTGCCGATTTCACTGTAAATGTTGAAGGTGTTGGGCATGTTTGCAGTTTTAGCACCTTTGATTTTCAAGAGCATGGAAACTCTCATTATGGTTCCCCATATAATGCCTCTCGTAGCAGAAGGAGTTCACAGGGAAAGATGGAGAAATCATTGTTGAGCTTTCAGAGTAGTTATCCATCATGGGAACCAAATACTCAGGGGAAGCAGTTTTTGCTAAATCTTAGAACATTCAGAGAGCGGAAGTTATCAGTACATGGAAACATACACACATCTTCCCCTCCTAGAATGTGGAGGGGTAGTCCCAATACGGCAGGGGATGAAGACAGAAACAGGTTTATATCCAGGGAAATGCCATACAGCACTTTTGCAACTGGCAATCACTTGGATTCGTTGTGGTTGATTGAAGCCAACCAGAATAATCACCCCTATCTTCTTGATTGGTACTACACAGCTCGACCTCATGATGCAGCTTCAAGAGATGTTCCATTAGAACCATATGGAATAACAGAACGTTATTCCAGAGACTATTCGATGCCTTCCAACTTGACACAGAATGAACCCAACTATGAAGAATACTCAAATGAGTATCACGAGGATCGGGCTGCATCTCAACTTGGGGCTTCCTCATCAGCTCCCATCCTTAGGGAGAGCTTTAGTCAGGAGCAAAACTATAATGAACTTCCCCACGCAACCCGAAGCCATTGGTGGGCTAGAAGTCGTCTACGGAGTGGACAAGCTCAGGCAAGCTTTTACGAGCCTCCAGATTTCAATGACCAAACAACATATAATTATCATGACAAGTTTTCTGATAGAGGGTCAGAGGATCAAGACCAAGAACAACACTTTTACTGGAGAGATCATCACAACAAATTATCTAAAACAACAATGACAGATGACTTAGAGGCAGGAGAATTTAATCTACATTTTGGTGATATTTATAGCAGACCTCCAGAAACTCCCACTATAAATTCCAGCACTGCTAGCTTTTGA

Protein sequence

>Msa1170100

MFSRPSGSGAFSIFKWKQKGASSLTRGLLHDDSPEIELSNYGRIPSPGSESPSDFLNGESVYVEPIADLDLFFERLYGYYCEKGLWCIVTKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLGKEALNQHPLTPLTLTKAIIVGYLGIFSFYWMFCFLRFFAQLKDILEIRQFFYSSLHVTDNEIQTMPWAKIVDKVVLVQNTRKLCVLKDLSAHDIVMRLMRKENYLIGMLNKGVLAFPISQWFPGAGPKVQSSPDGAQYRLVLTKTLEWTLNWCILHSMFDRNFCVRRDFVSNPKTLQKRLMVVGLAMLLLSPFLVIFMLAYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREYNEVDHLFRHRINNSVSHASDYLKQFPTPIISIIAKFISFVSGGFAAILIIIAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAIADELLVLDPEGTISMVVQHTHYMPKRWRGKEITDVVRIEFETLFQYTAMMLLEEMASIFLTPYLLLFIVPKRVDDILQYIADFTVNVEGVGHVCSFSTFDFQEHGNSHYGSPYNASRSRRSSQGKMEKSLLSFQSSYPSWEPNTQGKQFLLNLRTFRERKLSVHGNIHTSSPPRMWRGSPNTAGDEDRNRFISREMPYSTFATGNHLDSLWLIEANQNNHPYLLDWYYTARPHDAASRDVPLEPYGITERYSRDYSMPSNLTQNEPNYEEYSNEYHEDRAASQLGASSSAPILRESFSQEQNYNELPHATRSHWWARSRLRSGQAQASFYEPPDFNDQTTYNYHDKFSDRGSEDQDQEQHFYWRDHHNKLSKTTMTDDLEAGEFNLHFGDIYSRPPETPTINSSTASF*