AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1170580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170580 MtrunA17_Chr7g0261081 96.536 866 29 1 1 865 1 866 0.0 1753
Msa1170580 MtrunA17_Chr1g0184191 77.560 869 188 6 1 865 1 866 0.0 1395
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170580 AT2G31260.1 65.533 882 265 15 1 862 2 864 0.0 1121

Find 248 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTTTGAAAGACTTTA+TGG 0.100521 7_4:-63832158 Msa1170580:CDS
GAATTTATAGTGGGAGTTTC+TGG 0.112453 7_4:+63827730 None:intergenic
GTCCCTCTCTAATTGTTATT+TGG 0.145427 7_4:-63827600 Msa1170580:three_prime_UTR
AACTGCTTCCCCTGAGTATT+TGG 0.152672 7_4:+63828492 None:intergenic
AACAACTTTGTCAACAATTT+TGG 0.153920 7_4:+63831647 None:intergenic
GAAGGGTGCTTTCAATTAAA+TGG 0.190594 7_4:-63827649 Msa1170580:three_prime_UTR
GGAGAATTTAATCTACATTT+TGG 0.223978 7_4:-63827772 Msa1170580:CDS
AAAATATCATTGCAGATATT+TGG 0.224381 7_4:-63829675 Msa1170580:intron
CCCTTGAATGGACTTTAAAT+TGG 0.245163 7_4:-63831416 Msa1170580:CDS
TGTAGAACCAATTGCTGATT+TGG 0.253494 7_4:-63832183 Msa1170580:CDS
CCCATTTCACAATGGTTTCC+AGG 0.256603 7_4:-63831501 Msa1170580:CDS
GTAAGTGTGAGTGGGGTTAA+AGG 0.263267 7_4:+63831933 None:intergenic
GTCTTCATCCCCTGCCGTAT+TGG 0.264537 7_4:+63828377 None:intergenic
CGGAAGGAGAACTACTTAAT+TGG 0.265768 7_4:-63831552 Msa1170580:CDS
GTTATTCCATATGGTTCTAA+TGG 0.268064 7_4:+63828195 None:intergenic
CTGCTACGAGAGGCATTATA+TGG 0.271120 7_4:+63828915 None:intergenic
TTCTAGCCCACCAATGGCTT+CGG 0.278161 7_4:+63827986 None:intergenic
CAGGACTAGATTGAACTTTC+GGG 0.278462 7_4:+63831472 None:intergenic
TCTGAAGGGCTCTCACTTCC+TGG 0.293553 7_4:+63832230 None:intergenic
TCTTCATCCCCTGCCGTATT+GGG 0.293680 7_4:+63828378 None:intergenic
TCCAGTAAAAGTGTTGTTCT+TGG 0.302842 7_4:+63827848 None:intergenic
CCTCATCAGCTCCCATCCTT+AGG 0.305842 7_4:-63828056 Msa1170580:CDS
TGCAATTGCAGATGAGCTTC+TGG 0.319750 7_4:-63829595 Msa1170580:CDS
GGGCTCTCACTTCCTGGACT+TGG 0.325164 7_4:+63832236 None:intergenic
TCAGGACTAGATTGAACTTT+CGG 0.327003 7_4:+63831471 None:intergenic
GAAGATAGGGGTGATTATTC+TGG 0.327635 7_4:+63828268 None:intergenic
AGCTATTATTGTTGGATACT+TGG 0.328327 7_4:-63831907 Msa1170580:CDS
AGCTCGCCCCTTTGGGACTT+TGG 0.342784 7_4:-63832775 Msa1170580:five_prime_UTR
GGACTACCCCTCCACATTCT+AGG 0.344102 7_4:+63828399 None:intergenic
ACAATAAACAGAAGTAAATA+TGG 0.345471 7_4:+63829278 None:intergenic
AAGGTGTTGGGCATGTTTGC+AGG 0.345877 7_4:-63829120 Msa1170580:intron
GAACCTTGTTATAACCGTTT+TGG 0.346406 7_4:-63832442 Msa1170580:five_prime_UTR
TTTGAGTATTCTTCATAGTT+GGG 0.347898 7_4:+63828120 None:intergenic
ATTTGAGTATTCTTCATAGT+TGG 0.350704 7_4:+63828119 None:intergenic
TAACGTTCTGTTATTCCATA+TGG 0.351902 7_4:+63828186 None:intergenic
TACTATATGTTGATTGGAAT+GGG 0.357764 7_4:-63832040 Msa1170580:CDS
GATTGTTGAACTTCTAAGTC+TGG 0.359203 7_4:-63832093 Msa1170580:CDS
CTTACCAAAGCTATTATTGT+TGG 0.359747 7_4:-63831915 Msa1170580:CDS
TATTTGGTCGGAACTTGTTT+TGG 0.363325 7_4:-63829659 Msa1170580:CDS
TTAGGTTCAGCTCGCCCCTT+TGG 0.364104 7_4:-63832783 Msa1170580:intron
CCTGGAAACCATTGTGAAAT+GGG 0.364513 7_4:+63831501 None:intergenic
CAGAAAAGGCTTATGGTAGT+TGG 0.367074 7_4:-63830874 Msa1170580:CDS
TCTAGCCCACCAATGGCTTC+GGG 0.369897 7_4:+63827987 None:intergenic
TGAATTTGAAACCTTATTCC+AGG 0.371525 7_4:-63829475 Msa1170580:intron
GTTGTTTGGTCATTGAAATC+TGG 0.373910 7_4:+63827919 None:intergenic
ATCACCCCTATCTTCTTGAT+TGG 0.376879 7_4:-63828260 Msa1170580:CDS
TCTTTGCCACGCCATCTCTT+TGG 0.378039 7_4:+63829519 None:intergenic
CAGGCAGAATACCTGGAATA+AGG 0.378454 7_4:+63829464 None:intergenic
TTTGCTGTATATAGATTCAT+TGG 0.378561 7_4:-63827566 Msa1170580:three_prime_UTR
GGAATTAAGCCCTGTGATCT+TGG 0.378592 7_4:-63831978 Msa1170580:CDS
GACATTACAGAAAAGGCTTA+TGG 0.380010 7_4:-63830881 Msa1170580:CDS
AACAATGACAGATGACTTAG+AGG 0.383575 7_4:-63827797 Msa1170580:CDS
TCACAATGGTTTCCAGGTGC+TGG 0.383647 7_4:-63831495 Msa1170580:CDS
TTCAACATTTACAGTGAAAT+CGG 0.386132 7_4:+63829141 None:intergenic
GCTATTATTGTTGGATACTT+GGG 0.389328 7_4:-63831906 Msa1170580:CDS
TTTAGCAGACCAAGTGGTTC+CGG 0.389483 7_4:-63832365 Msa1170580:CDS
TAAAGTCCATTCAAGGGTCT+TGG 0.389766 7_4:+63831422 None:intergenic
GAGCATGGAAACTCTCATTA+TGG 0.390073 7_4:-63828942 Msa1170580:CDS
ACCTGGAAACCATTGTGAAA+TGG 0.391785 7_4:+63831500 None:intergenic
CATGATAATTATATGTTGTT+TGG 0.395237 7_4:+63827905 None:intergenic
TACTCAAAAGCTAGCAGTGC+TGG 0.395445 7_4:+63827708 None:intergenic
GTAGTACCAATCAAGAAGAT+AGG 0.404579 7_4:+63828254 None:intergenic
GATCGGGCTGCATCTCAACT+TGG 0.409523 7_4:-63828084 Msa1170580:CDS
CTTCGAGATGATGCTGTGCT+TGG 0.409901 7_4:+63830763 None:intergenic
AGAAAAGGCTTATGGTAGTT+GGG 0.415599 7_4:-63830873 Msa1170580:CDS
TGAGTATTTGGTTCCCATGA+TGG 0.416490 7_4:+63828504 None:intergenic
GGCTCTCACTTCCTGGACTT+GGG 0.417635 7_4:+63832237 None:intergenic
GGGATGGATGCTGTTGAATC+TGG 0.418976 7_4:-63831999 Msa1170580:CDS
TTCAGAGTAGTTATCCATCA+TGG 0.419889 7_4:-63828518 Msa1170580:CDS
ATCGGGCTGCATCTCAACTT+GGG 0.423241 7_4:-63828083 Msa1170580:CDS
GAAACAAAACATCCAATAGA+AGG 0.424244 7_4:+63831875 None:intergenic
TTACTATATGTTGATTGGAA+TGG 0.426389 7_4:-63832041 Msa1170580:CDS
GGGGTCCTTACATCTGAAAA+TGG 0.427595 7_4:+63827475 None:intergenic
AGCTTCTTTGCCAAGATCAC+AGG 0.430987 7_4:+63831968 None:intergenic
TCCCGAGGGAACAATATCTA+TGG 0.431420 7_4:-63829565 Msa1170580:CDS
TTGGTCTTTGGGGAATGGAT+TGG 0.441248 7_4:-63832423 Msa1170580:five_prime_UTR
ACCAATTTAAAGTCCATTCA+AGG 0.443781 7_4:+63831415 None:intergenic
CAGGGGATGAAGACAGAAAC+AGG 0.448292 7_4:-63828368 Msa1170580:CDS
ATTGTTGAACTTCTAAGTCT+GGG 0.448533 7_4:-63832092 Msa1170580:CDS
AAGGAGTTCACAGGGAAAGA+TGG 0.449011 7_4:-63828892 Msa1170580:CDS
TATGGTTACTACTGTGAGAA+AGG 0.450099 7_4:-63832140 Msa1170580:CDS
CACCATAGATATTGTTCCCT+CGG 0.451923 7_4:+63829563 None:intergenic
TAAGTGTGAGTGGGGTTAAA+GGG 0.453021 7_4:+63831934 None:intergenic
GTATCCAACAATAATAGCTT+TGG 0.455646 7_4:+63831911 None:intergenic
AGCCCTTCAGATTTCCTCAA+TGG 0.457772 7_4:-63832218 Msa1170580:CDS
AAGAGATCCAAATCAGCAAT+TGG 0.458966 7_4:+63832176 None:intergenic
CCTTAGGGAGAGCTTTAGTC+AGG 0.459193 7_4:-63828040 Msa1170580:CDS
GCGATTCTTTGCTCAACTAA+AGG 0.459966 7_4:-63831850 Msa1170580:CDS
TACTTACCAAGACCCTTGAA+TGG 0.460856 7_4:-63831428 Msa1170580:CDS
ACCAATGGCTTCGGGTTGCG+TGG 0.462694 7_4:+63827995 None:intergenic
TGAACTTTCGGGCCAGCACC+TGG 0.463130 7_4:+63831483 None:intergenic
ATCCAAAGACATTACAGAAA+AGG 0.464783 7_4:-63830888 Msa1170580:CDS
AGCAGTGCTGGAATTTATAG+TGG 0.465268 7_4:+63827720 None:intergenic
ACAGAAACAGGTTTATATCC+AGG 0.466653 7_4:-63828356 Msa1170580:CDS
TTTGCAATGATAGATATGAT+AGG 0.466727 7_4:+63829855 None:intergenic
CTCATCAGCTCCCATCCTTA+GGG 0.467690 7_4:-63828055 Msa1170580:CDS
TATAGGTCGACCATCTCTTC+AGG 0.471785 7_4:-63829935 Msa1170580:intron
TGCTACGAGAGGCATTATAT+GGG 0.472893 7_4:+63828916 None:intergenic
TTCGAGATGATGCTGTGCTT+GGG 0.476956 7_4:+63830764 None:intergenic
TTTATTATAAAGTTTGCGTT+CGG 0.478832 7_4:+63833703 None:intergenic
GAACTATAACTGCTATTAGC+CGG 0.481240 7_4:-63829620 Msa1170580:CDS
TCAGTCTCATGACTATATCA+TGG 0.482419 7_4:+63831577 None:intergenic
TAGTACCAATCAAGAAGATA+GGG 0.482945 7_4:+63828255 None:intergenic
ACTGTAAATGTTGAAGGTGT+TGG 0.484395 7_4:-63829133 Msa1170580:CDS
GAGATCGAATTGTCTAATTA+CGG 0.486113 7_4:-63832266 Msa1170580:CDS
TCTACGGAGTGGACAAGCTC+AGG 0.488656 7_4:-63827959 Msa1170580:CDS
GATGTTCCATTAGAACCATA+TGG 0.488783 7_4:-63828201 Msa1170580:CDS
ATGAAATTCAAACTATGCCC+TGG 0.493235 7_4:-63831671 Msa1170580:CDS
CTGTAAATGTTGAAGGTGTT+GGG 0.496375 7_4:-63829132 Msa1170580:CDS
AAACGATATTGTGCTCCATC+AGG 0.497164 7_4:+63831453 None:intergenic
CCAATGGCTTCGGGTTGCGT+GGG 0.500174 7_4:+63827996 None:intergenic
ATGATAGATATGATAGGTGT+AGG 0.502443 7_4:+63829861 None:intergenic
AGGACCCCAGCAAAATAGTC+TGG 0.502578 7_4:-63827460 Msa1170580:three_prime_UTR
AAATGAGTATCACGAGGATC+GGG 0.504809 7_4:-63828100 Msa1170580:CDS
TAATTAGACAATTCGATCTC+CGG 0.512269 7_4:+63832269 None:intergenic
ATTCCTTGTCATATTCATGC+TGG 0.512407 7_4:-63830827 Msa1170580:CDS
CATATACACTTTCTCCATTG+AGG 0.512728 7_4:+63832204 None:intergenic
GATTTCACTGTAAATGTTGA+AGG 0.515835 7_4:-63829139 Msa1170580:CDS
ATCATGGGAACCAAATACTC+AGG 0.518116 7_4:-63828502 Msa1170580:CDS
ACTACTGTGAGAAAGGGTTA+TGG 0.518635 7_4:-63832133 Msa1170580:CDS
TATGAACCTCAGCTTGATGT+TGG 0.519250 7_4:-63827525 Msa1170580:three_prime_UTR
AGGGGTAGTCCCAATACGGC+AGG 0.521250 7_4:-63828387 Msa1170580:CDS
CAAATGAGTATCACGAGGAT+CGG 0.521885 7_4:-63828101 Msa1170580:CDS
AATGATGTTACTTGAGGAGA+TGG 0.523349 7_4:-63829318 Msa1170580:CDS
TATGGTGTATTGTTACAAAG+TGG 0.525702 7_4:-63832115 Msa1170580:CDS
GGAAGGCATCGAATAGTCTC+TGG 0.526974 7_4:+63828161 None:intergenic
ACCATAGATATTGTTCCCTC+GGG 0.527633 7_4:+63829564 None:intergenic
GTCAACGCCAAAGTCCCAAA+GGG 0.527737 7_4:+63832768 None:intergenic
GCACAGCATCATCTCGAAGA+TGG 0.528098 7_4:-63830759 Msa1170580:CDS
ATGGTTACTACTGTGAGAAA+GGG 0.529048 7_4:-63832139 Msa1170580:CDS
TAGCTTTGGTAAGTGTGAGT+GGG 0.530753 7_4:+63831925 None:intergenic
GAAGATGGTCAAACTTGTCT+AGG 0.533585 7_4:-63830744 Msa1170580:CDS
AGCATGAATATGACAAGGAA+TGG 0.534278 7_4:+63830829 None:intergenic
TCATTCTGTGTCAAGTTGGA+AGG 0.535353 7_4:+63828144 None:intergenic
TGTTCACAGACACTAATAGT+AGG 0.535903 7_4:+63832391 None:intergenic
ACTTCTGTTTATTGTCCCAA+AGG 0.536240 7_4:-63829270 Msa1170580:intron
CCTAAGGATGGGAGCTGATG+AGG 0.537502 7_4:+63828056 None:intergenic
TCAGAGTAGTTATCCATCAT+GGG 0.539771 7_4:-63828517 Msa1170580:CDS
CTATTATTGTTGGATACTTG+GGG 0.540123 7_4:-63831905 Msa1170580:CDS
TCCATGCTCTTGAAAATCAA+AGG 0.540684 7_4:+63828956 None:intergenic
AACTATAACTGCTATTAGCC+GGG 0.542388 7_4:-63829619 Msa1170580:CDS
ACTAAAGCTCTCCCTAAGGA+TGG 0.543023 7_4:+63828044 None:intergenic
ATAGGGGTGATTATTCTGGT+TGG 0.544484 7_4:+63828272 None:intergenic
AAAGTTCAATCTAGTCCTGA+TGG 0.544493 7_4:-63831468 Msa1170580:CDS
TAATCCGATGCCTGAAGAGA+TGG 0.549224 7_4:+63829925 None:intergenic
CTCGAGGAGTCTCTGCTAGA+GGG 0.550555 7_4:-63829777 Msa1170580:CDS
TTGTTCTCGTTCAAAATACT+CGG 0.551966 7_4:-63831629 Msa1170580:CDS
TCTCGAGGAGTCTCTGCTAG+AGG 0.552554 7_4:-63829778 Msa1170580:CDS
CTAAAAGCACCGGAACCACT+TGG 0.553267 7_4:+63832356 None:intergenic
GTTCGGAAGGAGATGAGCAT+AGG 0.553415 7_4:+63833720 None:intergenic
GCTTCTTTGCCAAGATCACA+GGG 0.553864 7_4:+63831969 None:intergenic
ACGCAACCCGAAGCCATTGG+TGG 0.555348 7_4:-63827993 Msa1170580:CDS
GTGGAGGGGTAGTCCCAATA+CGG 0.557059 7_4:-63828391 Msa1170580:CDS
GGGTAGTCCCAATACGGCAG+GGG 0.557263 7_4:-63828385 Msa1170580:CDS
TTATAAAGTTTGCGTTCGGA+AGG 0.557342 7_4:+63833707 None:intergenic
ATGACAGATGACTTAGAGGC+AGG 0.558731 7_4:-63827793 Msa1170580:CDS
TGCTGGCATATCTCTTTCTG+AGG 0.559787 7_4:-63830810 Msa1170580:CDS
TCGTAGCAGAAGGAGTTCAC+AGG 0.560103 7_4:-63828901 Msa1170580:CDS
TTAGTTGAGCAAAGAATCGC+AGG 0.562238 7_4:+63831853 None:intergenic
TCGACCATCTCTTCAGGCAT+CGG 0.562994 7_4:-63829929 Msa1170580:CDS
GGCGCGTCATCTTTGACTAG+AGG 0.563241 7_4:-63832311 Msa1170580:CDS
GGGCTCCGTAATGCAAAATG+TGG 0.563493 7_4:-63832020 Msa1170580:CDS
TTGTTGAACTTCTAAGTCTG+GGG 0.566155 7_4:-63832091 Msa1170580:CDS
AGTGCTGTATGGCATTTCCC+TGG 0.566226 7_4:+63828338 None:intergenic
TACGGAAGGATCCCAAGTCC+AGG 0.566589 7_4:-63832248 Msa1170580:CDS
CTTAATTGGAATGCTCAACA+AGG 0.567745 7_4:-63831538 Msa1170580:CDS
TATCATTGCAGATATTTGGT+CGG 0.568586 7_4:-63829671 Msa1170580:intron
CAGAAACAGGTTTATATCCA+GGG 0.569124 7_4:-63828355 Msa1170580:CDS
TTCCCCTCCTAGAATGTGGA+GGG 0.569698 7_4:-63828406 Msa1170580:CDS
TTTCCAAATAACAATTAGAG+AGG 0.570237 7_4:+63827597 None:intergenic
ACCGATCAAACATGCTATGT+AGG 0.571866 7_4:+63831388 None:intergenic
CAGAATTGCAGCAAAGCCAC+CGG 0.573817 7_4:+63829815 None:intergenic
TTTGAATATACTAAAAGCAC+CGG 0.574468 7_4:+63832346 None:intergenic
TTTACTTCATGATGATTCGC+CGG 0.574817 7_4:-63832288 Msa1170580:CDS
TCCTACATAGCATGTTTGAT+CGG 0.578136 7_4:-63831389 Msa1170580:intron
CTCCATTGAGGAAATCTGAA+GGG 0.578699 7_4:+63832216 None:intergenic
TCTCCATTGAGGAAATCTGA+AGG 0.580109 7_4:+63832215 None:intergenic
AGCTTTGGTAAGTGTGAGTG+GGG 0.580159 7_4:+63831926 None:intergenic
TTGCTTTCCCCATTTCACAA+TGG 0.581632 7_4:-63831509 Msa1170580:CDS
GGGGTAGTCCCAATACGGCA+GGG 0.581900 7_4:-63828386 Msa1170580:CDS
CCATTCCCCAAAGACCAAAA+CGG 0.583103 7_4:+63832428 None:intergenic
CGCAACCCGAAGCCATTGGT+GGG 0.583279 7_4:-63827992 Msa1170580:CDS
CCAGTTGCAAAAGTGCTGTA+TGG 0.583969 7_4:+63828327 None:intergenic
AGATGATGAAACAGTAGCGA+AGG 0.584404 7_4:+63833543 None:intergenic
GTTTGGTCATTGAAATCTGG+AGG 0.584448 7_4:+63827922 None:intergenic
CACATTATATGCCAAAGAGA+TGG 0.585314 7_4:-63829530 Msa1170580:CDS
GAGCGGAAGTTATCAGTACA+TGG 0.585425 7_4:-63828444 Msa1170580:CDS
TTCCAAATAACAATTAGAGA+GGG 0.588455 7_4:+63827598 None:intergenic
GATGAAACAGTAGCGAAGGA+AGG 0.589559 7_4:+63833547 None:intergenic
TCCTTACATCTGAAAATGGA+AGG 0.591128 7_4:+63827479 None:intergenic
TCGGAAACTATGTGTGCTGA+AGG 0.593556 7_4:-63831610 Msa1170580:CDS
CTAAAGCTCTCCCTAAGGAT+GGG 0.595120 7_4:+63828045 None:intergenic
GGGTTCATTCTGTGTCAAGT+TGG 0.595429 7_4:+63828140 None:intergenic
CCTGACTAAAGCTCTCCCTA+AGG 0.596692 7_4:+63828040 None:intergenic
TGAAATTCAAACTATGCCCT+GGG 0.597379 7_4:-63831670 Msa1170580:CDS
TCGGGCTGCATCTCAACTTG+GGG 0.597814 7_4:-63828082 Msa1170580:CDS
CAGTCTCATGACTATATCAT+GGG 0.597885 7_4:+63831578 None:intergenic
GACGACTTCTAGCCCACCAA+TGG 0.598590 7_4:+63827980 None:intergenic
GGTGGGCTAGAAGTCGTCTA+CGG 0.600262 7_4:-63827975 Msa1170580:CDS
ATAGCTTTGGTAAGTGTGAG+TGG 0.602946 7_4:+63831924 None:intergenic
CCAATTTAAAGTCCATTCAA+GGG 0.603846 7_4:+63831416 None:intergenic
CCGTAATGCAAAATGTGGGA+TGG 0.604122 7_4:-63832015 Msa1170580:CDS
ACCCCTCCACATTCTAGGAG+GGG 0.604562 7_4:+63828404 None:intergenic
GCTCATCTGCAATTGCAGCC+CGG 0.605056 7_4:+63829601 None:intergenic
TGTCAACGCCAAAGTCCCAA+AGG 0.605903 7_4:+63832767 None:intergenic
TTTATAGTGGGAGTTTCTGG+AGG 0.606997 7_4:+63827733 None:intergenic
CTTCCCCTCCTAGAATGTGG+AGG 0.608862 7_4:-63828407 Msa1170580:CDS
TCATGGGAACCAAATACTCA+GGG 0.611108 7_4:-63828501 Msa1170580:CDS
TAAGTTCCAACATCAAGCTG+AGG 0.612971 7_4:+63827519 None:intergenic
CATCTTCCCCTCCTAGAATG+TGG 0.614729 7_4:-63828410 Msa1170580:CDS
TACCCCTCCACATTCTAGGA+GGG 0.614814 7_4:+63828403 None:intergenic
AGAGAGGGACAATCATGACT+TGG 0.617793 7_4:+63827613 None:intergenic
ACAGAAGTAAATATGGAGTG+AGG 0.618250 7_4:+63829285 None:intergenic
AGATGGAGAAATCATTGTTG+AGG 0.619203 7_4:-63828875 Msa1170580:intron
TACAGCAATGATGTTACTTG+AGG 0.621146 7_4:-63829324 Msa1170580:CDS
TCTCTTGAAGCTGCATCATG+AGG 0.621641 7_4:+63828222 None:intergenic
GCAATCACTTGGATTCGTTG+TGG 0.621682 7_4:-63828305 Msa1170580:CDS
ATATTCAAATGGAAACAGAA+AGG 0.623281 7_4:-63832332 Msa1170580:CDS
CGTAGCAGAAGGAGTTCACA+GGG 0.625758 7_4:-63828900 Msa1170580:CDS
ATCTTAGAACATTCAGAGAG+CGG 0.626044 7_4:-63828461 Msa1170580:CDS
CGAGGGAACAATATCTATGG+TGG 0.626273 7_4:-63829562 Msa1170580:CDS
TCGAATTGTCTAATTACGGA+AGG 0.628393 7_4:-63832262 Msa1170580:CDS
TATATAGATTCATTGGTGTG+AGG 0.629591 7_4:-63827559 Msa1170580:three_prime_UTR
CTACCCCTCCACATTCTAGG+AGG 0.629863 7_4:+63828402 None:intergenic
ATAATGCCTCTCGTAGCAGA+AGG 0.629914 7_4:-63828911 Msa1170580:CDS
GCAGTGCTGGAATTTATAGT+GGG 0.639720 7_4:+63827721 None:intergenic
GCTTCTGGTCTTAGATCCCG+AGG 0.643614 7_4:-63829580 Msa1170580:CDS
AGTCATGAGACTGATGCGGA+AGG 0.646846 7_4:-63831568 Msa1170580:CDS
GATGGTCAAACTTGTCTAGG+TGG 0.647207 7_4:-63830741 Msa1170580:CDS
CTGGAAACCATTGTGAAATG+GGG 0.649696 7_4:+63831502 None:intergenic
TCCCCTCCTAGAATGTGGAG+GGG 0.656107 7_4:-63828405 Msa1170580:CDS
GCTAGAAGTCGTCTACGGAG+TGG 0.667710 7_4:-63827970 Msa1170580:CDS
AGACCAAAACGGTTATAACA+AGG 0.668823 7_4:+63832439 None:intergenic
TATATGCCAAAGAGATGGCG+TGG 0.670967 7_4:-63829525 Msa1170580:CDS
TTAATTGGAATGCTCAACAA+GGG 0.673370 7_4:-63831537 Msa1170580:CDS
ACAATGTTTAGCAGACCAAG+TGG 0.673800 7_4:-63832371 Msa1170580:CDS
TGGCAAAGAAATTACTGACG+TGG 0.676549 7_4:-63829505 Msa1170580:CDS
ATATAGTCATGAGACTGATG+CGG 0.679190 7_4:-63831572 Msa1170580:CDS
GGCTCCGTAATGCAAAATGT+GGG 0.679327 7_4:-63832019 Msa1170580:CDS
AGTACCAATCAAGAAGATAG+GGG 0.679475 7_4:+63828256 None:intergenic
CTTCTGGTCTTAGATCCCGA+GGG 0.679702 7_4:-63829579 Msa1170580:CDS
TGAACTCCTTCTGCTACGAG+AGG 0.680258 7_4:+63828905 None:intergenic
GCTACGAGAGGCATTATATG+GGG 0.685648 7_4:+63828917 None:intergenic
ATGCCAGCATGAATATGACA+AGG 0.687544 7_4:+63830824 None:intergenic
TCAACGCCAAAGTCCCAAAG+GGG 0.699074 7_4:+63832769 None:intergenic
ATAAGGTTTCAAATTCAATG+CGG 0.726994 7_4:+63829481 None:intergenic
ATACTCAAATGAGTATCACG+AGG 0.745566 7_4:-63828106 Msa1170580:CDS
CATGGGAACCAAATACTCAG+GGG 0.758921 7_4:-63828500 Msa1170580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTGGAAAATTTA+TGG - chr7_4:63830853-63830872 Msa1170580:CDS 10.0%
!!! TGATAATTTTTTTTTAGTAT+AGG - chr7_4:63830896-63830915 Msa1170580:CDS 10.0%
!! TGTAAATAAATAACAAATAA+CGG + chr7_4:63831833-63831852 None:intergenic 10.0%
!! TAAAATTCAAAACATATATA+TGG + chr7_4:63832454-63832473 None:intergenic 10.0%
!!! TTTTTTATACTTTTGTGAAA+TGG - chr7_4:63828399-63828418 Msa1170580:CDS 15.0%
!!! TTATTTTTCTGTTGTTTATT+TGG - chr7_4:63828665-63828684 Msa1170580:intron 15.0%
!!! TATTTTTCTGTTGTTTATTT+GGG - chr7_4:63828666-63828685 Msa1170580:intron 15.0%
!! GTAAGATTCTAATATTAATT+TGG - chr7_4:63828757-63828776 Msa1170580:intron 15.0%
!!! TTTTTTTACTATATGTTGAT+TGG - chr7_4:63829187-63829206 Msa1170580:intron 15.0%
!! ACACATTATTAAATATTAAC+AGG + chr7_4:63829931-63829950 None:intergenic 15.0%
!!! CTATTCATGAAAATTTTTAT+TGG - chr7_4:63830842-63830861 Msa1170580:CDS 15.0%
!! ATTTATGGAAATTACAATAA+AGG - chr7_4:63830868-63830887 Msa1170580:CDS 15.0%
!! TATTTATTTACACATAGAAT+AGG - chr7_4:63831841-63831860 Msa1170580:CDS 15.0%
!! CAAAATATTCATAATAGTAA+TGG + chr7_4:63832486-63832505 None:intergenic 15.0%
!! AATTAAACGAAAATACATAT+AGG + chr7_4:63832672-63832691 None:intergenic 15.0%
!! TTTATTATAAAGTTTGCGTT+CGG + chr7_4:63827533-63827552 None:intergenic 20.0%
!! TCATTGATATTCATATGATA+TGG + chr7_4:63827765-63827784 None:intergenic 20.0%
!! CATATGAATATCAATGATTT+CGG - chr7_4:63827768-63827787 Msa1170580:CDS 20.0%
!!! TAACTGAATTTGTTCTTTTT+TGG - chr7_4:63828070-63828089 Msa1170580:CDS 20.0%
!! TATACAAATACAATGATCTT+TGG - chr7_4:63828127-63828146 Msa1170580:CDS 20.0%
!!! TTGATTATTTTTGAACACTT+AGG - chr7_4:63828346-63828365 Msa1170580:CDS 20.0%
!! ATTTCACAAAATGGTTAAAA+GGG + chr7_4:63829992-63830011 None:intergenic 20.0%
!!! TTTTAACCATTTTGTGAAAT+CGG - chr7_4:63829992-63830011 Msa1170580:intron 20.0%
!! ATAAATTGCATCCTTATATA+AGG + chr7_4:63830068-63830087 None:intergenic 20.0%
!! TTTCAAATTTCATGTTATTC+TGG - chr7_4:63830109-63830128 Msa1170580:intron 20.0%
!! AATTTCATAGTTAGTTGTAT+AGG - chr7_4:63830141-63830160 Msa1170580:intron 20.0%
!!! GTTTATTTTCAGTACATAAT+TGG - chr7_4:63830684-63830703 Msa1170580:intron 20.0%
!!! TTATCAATAACTTGTGTTAT+AGG - chr7_4:63831281-63831300 Msa1170580:intron 20.0%
!!! AAATTCATATCTTTTGTATC+CGG - chr7_4:63831399-63831418 Msa1170580:CDS 20.0%
!! AAAATATCATTGCAGATATT+TGG - chr7_4:63831558-63831577 Msa1170580:CDS 20.0%
!! ACAATAAACAGAAGTAAATA+TGG + chr7_4:63831958-63831977 None:intergenic 20.0%
!! TACTTGGAGATTTATTTATA+TGG - chr7_4:63831995-63832014 Msa1170580:CDS 20.0%
!!! TGCCAGTAAAATAATTTTTT+TGG - chr7_4:63832636-63832655 Msa1170580:intron 20.0%
!!! CTCCAAAAAAATTATTTTAC+TGG + chr7_4:63832641-63832660 None:intergenic 20.0%
!! CATGATAATTATATGTTGTT+TGG + chr7_4:63833331-63833350 None:intergenic 20.0%
!! AAACTCTTTTCTTTACTTCA+AGG - chr7_4:63827715-63827734 Msa1170580:CDS 25.0%
! CATATGATATGGAAAAGAAA+GGG + chr7_4:63827754-63827773 None:intergenic 25.0%
! TCATATGATATGGAAAAGAA+AGG + chr7_4:63827755-63827774 None:intergenic 25.0%
! CAACTATCTTAACTATTCAT+TGG + chr7_4:63828220-63828239 None:intergenic 25.0%
! AGTTAAGATAGTTGAAAATG+CGG - chr7_4:63828226-63828245 Msa1170580:CDS 25.0%
!! ACATTTGAAGATGATGTTTT+AGG - chr7_4:63828432-63828451 Msa1170580:CDS 25.0%
!! TTTGAATATACTAAAAGCAC+CGG + chr7_4:63828890-63828909 None:intergenic 25.0%
!! GTGCTTTTAGTATATTCAAA+TGG - chr7_4:63828890-63828909 Msa1170580:CDS 25.0%
! ATATTCAAATGGAAACAGAA+AGG - chr7_4:63828901-63828920 Msa1170580:CDS 25.0%
!! AAAAAATCCTGAAAAGCATA+TGG + chr7_4:63829172-63829191 None:intergenic 25.0%
!! TTACTATATGTTGATTGGAA+TGG - chr7_4:63829192-63829211 Msa1170580:intron 25.0%
!! TACTATATGTTGATTGGAAT+GGG - chr7_4:63829193-63829212 Msa1170580:intron 25.0%
!! AACAACTTTGTCAACAATTT+TGG + chr7_4:63829589-63829608 None:intergenic 25.0%
!! GTATGAATTATTGTCTTTTG+AGG - chr7_4:63829949-63829968 Msa1170580:intron 25.0%
! AAATGGTTAAAAGGGAAAAT+TGG + chr7_4:63829984-63830003 None:intergenic 25.0%
! GATTTCACAAAATGGTTAAA+AGG + chr7_4:63829993-63830012 None:intergenic 25.0%
! ATAAGGATGCAATTTATATC+TGG - chr7_4:63830071-63830090 Msa1170580:intron 25.0%
!! AGGTATCATATTCATTTTCT+TGG - chr7_4:63830534-63830553 Msa1170580:intron 25.0%
! GAAGAGAAAATGAAAGAAAA+TGG + chr7_4:63830564-63830583 None:intergenic 25.0%
! AACTGAATAAAATATGCACT+TGG + chr7_4:63830667-63830686 None:intergenic 25.0%
! AACTTCAAATCTTTCTTTCA+TGG + chr7_4:63830814-63830833 None:intergenic 25.0%
!!! CTTGCATATTTTTTTGAAAC+AGG - chr7_4:63831016-63831035 Msa1170580:intron 25.0%
! TGTAACATAGTTATTTGACT+TGG - chr7_4:63831074-63831093 Msa1170580:intron 25.0%
!! TAATTCTAAAAACGATAACC+AGG + chr7_4:63831226-63831245 None:intergenic 25.0%
! TTTGCAATGATAGATATGAT+AGG + chr7_4:63831381-63831400 None:intergenic 25.0%
! ATAAGGTTTCAAATTCAATG+CGG + chr7_4:63831755-63831774 None:intergenic 25.0%
!! CATAATGTGAATGTATTGAT+CGG + chr7_4:63831801-63831820 None:intergenic 25.0%
! TTCAACATTTACAGTGAAAT+CGG + chr7_4:63832095-63832114 None:intergenic 25.0%
! CTCATAAGACAAAATTCATT+AGG - chr7_4:63832405-63832424 Msa1170580:five_prime_UTR 25.0%
! TAAGACAAAATTCATTAGGA+AGG - chr7_4:63832409-63832428 Msa1170580:five_prime_UTR 25.0%
!!! GTGCATGCTTTTTAATTTTT+TGG - chr7_4:63832518-63832537 Msa1170580:intron 25.0%
! TTTGAGTATTCTTCATAGTT+GGG + chr7_4:63833116-63833135 None:intergenic 25.0%
! ATTTGAGTATTCTTCATAGT+TGG + chr7_4:63833117-63833136 None:intergenic 25.0%
!! GGAGAATTTAATCTACATTT+TGG - chr7_4:63833461-63833480 Msa1170580:intron 25.0%
! TTCCAAATAACAATTAGAGA+GGG + chr7_4:63833638-63833657 None:intergenic 25.0%
! TTTCCAAATAACAATTAGAG+AGG + chr7_4:63833639-63833658 None:intergenic 25.0%
!! TTTGCTGTATATAGATTCAT+TGG - chr7_4:63833667-63833686 Msa1170580:five_prime_UTR 25.0%
!! GATTTTTGTTTATAGTTGCG+TGG + chr7_4:63827624-63827643 None:intergenic 30.0%
! GTTTGCATATTTTGTAACGT+TGG - chr7_4:63827925-63827944 Msa1170580:CDS 30.0%
!!! CTTTTTTGGTCTGACATTTA+TGG - chr7_4:63828084-63828103 Msa1170580:CDS 30.0%
TGGAGCAATTATCATAACAT+GGG + chr7_4:63828278-63828297 None:intergenic 30.0%
ATGGAGCAATTATCATAACA+TGG + chr7_4:63828279-63828298 None:intergenic 30.0%
TGTTATGATAATTGCTCCAT+TGG - chr7_4:63828279-63828298 Msa1170580:CDS 30.0%
GTTATGATAATTGCTCCATT+GGG - chr7_4:63828280-63828299 Msa1170580:CDS 30.0%
ACAAATACACATTGCCAATT+TGG + chr7_4:63828311-63828330 None:intergenic 30.0%
AAAGTTTGAGAGAGAAAGTT+AGG + chr7_4:63828376-63828395 None:intergenic 30.0%
TCATTAACTGGTAGAAATCT+TGG - chr7_4:63828527-63828546 Msa1170580:intron 30.0%
GAAAAATAAAAGCGAAGACA+AGG + chr7_4:63828654-63828673 None:intergenic 30.0%
TTGCAAATTGCATTCCTATT+TGG + chr7_4:63828695-63828714 None:intergenic 30.0%
!! TTATAACCGTTTTGGTCTTT+GGG - chr7_4:63828799-63828818 Msa1170580:intron 30.0%
TAATTAGACAATTCGATCTC+CGG + chr7_4:63828967-63828986 None:intergenic 30.0%
GAGATCGAATTGTCTAATTA+CGG - chr7_4:63828967-63828986 Msa1170580:CDS 30.0%
! CTCTTCTTTGAAAGACTTTA+TGG - chr7_4:63829075-63829094 Msa1170580:intron 30.0%
TATGGTGTATTGTTACAAAG+TGG - chr7_4:63829118-63829137 Msa1170580:intron 30.0%
ATTGTTGAACTTCTAAGTCT+GGG - chr7_4:63829141-63829160 Msa1170580:CDS 30.0%
CTTACCAAAGCTATTATTGT+TGG - chr7_4:63829318-63829337 Msa1170580:CDS 30.0%
GTATCCAACAATAATAGCTT+TGG + chr7_4:63829325-63829344 None:intergenic 30.0%
AGCTATTATTGTTGGATACT+TGG - chr7_4:63829326-63829345 Msa1170580:CDS 30.0%
GCTATTATTGTTGGATACTT+GGG - chr7_4:63829327-63829346 Msa1170580:CDS 30.0%
CTATTATTGTTGGATACTTG+GGG - chr7_4:63829328-63829347 Msa1170580:CDS 30.0%
GAAACAAAACATCCAATAGA+AGG + chr7_4:63829361-63829380 None:intergenic 30.0%
TTGTTCTCGTTCAAAATACT+CGG - chr7_4:63829604-63829623 Msa1170580:CDS 30.0%
TTAATTGGAATGCTCAACAA+GGG - chr7_4:63829696-63829715 Msa1170580:intron 30.0%
! CCAATTTAAAGTCCATTCAA+GGG + chr7_4:63829820-63829839 None:intergenic 30.0%
! ACCAATTTAAAGTCCATTCA+AGG + chr7_4:63829821-63829840 None:intergenic 30.0%
! AACAAACCGATTTCACAAAA+TGG + chr7_4:63830001-63830020 None:intergenic 30.0%
TTGTTTGTTTGAAGGATAGA+AGG - chr7_4:63830020-63830039 Msa1170580:intron 30.0%
ATAGTTAGTTGTATAGGAGT+TGG - chr7_4:63830147-63830166 Msa1170580:intron 30.0%
GATTGACATATGTTGTGATT+TGG - chr7_4:63830210-63830229 Msa1170580:intron 30.0%
ATCCAAAGACATTACAGAAA+AGG - chr7_4:63830345-63830364 Msa1170580:intron 30.0%
!! GATTTTTAGGGAATACAATG+AGG - chr7_4:63830514-63830533 Msa1170580:intron 30.0%
!! ACATAGTATAGAAGTGTCTA+TGG + chr7_4:63830638-63830657 None:intergenic 30.0%
AGTTATCCAAAAACCTTTGA+TGG - chr7_4:63830722-63830741 Msa1170580:CDS 30.0%
TTATATACACAACCACTGAT+GGG + chr7_4:63830751-63830770 None:intergenic 30.0%
ATTATATACACAACCACTGA+TGG + chr7_4:63830752-63830771 None:intergenic 30.0%
CATGCATTCTCTGTTAATAT+CGG - chr7_4:63830777-63830796 Msa1170580:CDS 30.0%
ATTTATGAGTGACCACATTA+TGG - chr7_4:63830959-63830978 Msa1170580:intron 30.0%
ACTAGAATAACACCATAATG+TGG + chr7_4:63830974-63830993 None:intergenic 30.0%
CTTTCAAACAACATAAATGC+TGG + chr7_4:63831100-63831119 None:intergenic 30.0%
! GCTATTGTTTGGTAGTATAA+AGG + chr7_4:63831126-63831145 None:intergenic 30.0%
CACAAGTTATTGATAAGCTT+TGG + chr7_4:63831277-63831296 None:intergenic 30.0%
ATGATAGATATGATAGGTGT+AGG + chr7_4:63831375-63831394 None:intergenic 30.0%
ATCAACAGAAGTTCATTACA+TGG + chr7_4:63831482-63831501 None:intergenic 30.0%
TTACTGAGTTCATAATGTCA+TGG - chr7_4:63831504-63831523 Msa1170580:CDS 30.0%
TATCATTGCAGATATTTGGT+CGG - chr7_4:63831562-63831581 Msa1170580:CDS 30.0%
! TGAATTTGAAACCTTATTCC+AGG - chr7_4:63831758-63831777 Msa1170580:intron 30.0%
! TGCTCATGTTTTTCTTTGTA+TGG - chr7_4:63831879-63831898 Msa1170580:CDS 30.0%
GATTTCACTGTAAATGTTGA+AGG - chr7_4:63832094-63832113 Msa1170580:CDS 30.0%
! ATATTTTCTGCCATAAGCTA+TGG + chr7_4:63832221-63832240 None:intergenic 30.0%
ACAATGTTTATACTCTCAGT+TGG - chr7_4:63832557-63832576 Msa1170580:intron 30.0%
TAGTACCAATCAAGAAGATA+GGG + chr7_4:63832981-63833000 None:intergenic 30.0%
!! GTTATTCCATATGGTTCTAA+TGG + chr7_4:63833041-63833060 None:intergenic 30.0%
TAACGTTCTGTTATTCCATA+TGG + chr7_4:63833050-63833069 None:intergenic 30.0%
! ATGACAAGTTTTCTGATAGA+GGG - chr7_4:63833348-63833367 Msa1170580:intron 30.0%
AAACAAAAAATGTGGGAAAG+GGG + chr7_4:63833563-63833582 None:intergenic 30.0%
CAAACAAAAAATGTGGGAAA+GGG + chr7_4:63833564-63833583 None:intergenic 30.0%
TATATAGATTCATTGGTGTG+AGG - chr7_4:63833674-63833693 Msa1170580:five_prime_UTR 30.0%
TTATAAAGTTTGCGTTCGGA+AGG + chr7_4:63827529-63827548 None:intergenic 35.0%
! TTTGCACAGAAATTTTGCCT+CGG + chr7_4:63828169-63828188 None:intergenic 35.0%
! ACAACTTTTCTCTCATGATC+AGG - chr7_4:63828496-63828515 Msa1170580:CDS 35.0%
! TTTTCTCTCATGATCAGGTA+TGG - chr7_4:63828501-63828520 Msa1170580:CDS 35.0%
! CAGGTATGGTTTTCATTAAC+TGG - chr7_4:63828515-63828534 Msa1170580:CDS 35.0%
!! GTTTATTTGGGTTGCCAAAT+AGG - chr7_4:63828678-63828697 Msa1170580:intron 35.0%
!! GAACCTTGTTATAACCGTTT+TGG - chr7_4:63828791-63828810 Msa1170580:intron 35.0%
AGACCAAAACGGTTATAACA+AGG + chr7_4:63828797-63828816 None:intergenic 35.0%
!! GTTATAACCGTTTTGGTCTT+TGG - chr7_4:63828798-63828817 Msa1170580:intron 35.0%
!! TATAACCGTTTTGGTCTTTG+GGG - chr7_4:63828800-63828819 Msa1170580:intron 35.0%
TGTTCACAGACACTAATAGT+AGG + chr7_4:63828845-63828864 None:intergenic 35.0%
TTTACTTCATGATGATTCGC+CGG - chr7_4:63828945-63828964 Msa1170580:CDS 35.0%
TCGAATTGTCTAATTACGGA+AGG - chr7_4:63828971-63828990 Msa1170580:intron 35.0%
CATATACACTTTCTCCATTG+AGG + chr7_4:63829032-63829051 None:intergenic 35.0%
! TGTAGAACCAATTGCTGATT+TGG - chr7_4:63829050-63829069 Msa1170580:intron 35.0%
AAGAGATCCAAATCAGCAAT+TGG + chr7_4:63829060-63829079 None:intergenic 35.0%
TATGGTTACTACTGTGAGAA+AGG - chr7_4:63829093-63829112 Msa1170580:intron 35.0%
ATGGTTACTACTGTGAGAAA+GGG - chr7_4:63829094-63829113 Msa1170580:intron 35.0%
GATTGTTGAACTTCTAAGTC+TGG - chr7_4:63829140-63829159 Msa1170580:CDS 35.0%
TTGTTGAACTTCTAAGTCTG+GGG - chr7_4:63829142-63829161 Msa1170580:CDS 35.0%
!!! TGGGGATTTTTTCCTTCTAT+TGG - chr7_4:63829346-63829365 Msa1170580:intron 35.0%
CTAAAATGCATTGAAGCAGT+TGG - chr7_4:63829469-63829488 Msa1170580:intron 35.0%
AGACAAAAACATGTGAACTG+TGG + chr7_4:63829503-63829522 None:intergenic 35.0%
ATGAAATTCAAACTATGCCC+TGG - chr7_4:63829562-63829581 Msa1170580:CDS 35.0%
TGAAATTCAAACTATGCCCT+GGG - chr7_4:63829563-63829582 Msa1170580:CDS 35.0%
CAGTCTCATGACTATATCAT+GGG + chr7_4:63829658-63829677 None:intergenic 35.0%
TCAGTCTCATGACTATATCA+TGG + chr7_4:63829659-63829678 None:intergenic 35.0%
ATATAGTCATGAGACTGATG+CGG - chr7_4:63829661-63829680 Msa1170580:CDS 35.0%
CTTAATTGGAATGCTCAACA+AGG - chr7_4:63829695-63829714 Msa1170580:intron 35.0%
TCAGGACTAGATTGAACTTT+CGG + chr7_4:63829765-63829784 None:intergenic 35.0%
AAAGTTCAATCTAGTCCTGA+TGG - chr7_4:63829765-63829784 Msa1170580:intron 35.0%
! CCCTTGAATGGACTTTAAAT+TGG - chr7_4:63829817-63829836 Msa1170580:CDS 35.0%
TCCTACATAGCATGTTTGAT+CGG - chr7_4:63829844-63829863 Msa1170580:CDS 35.0%
CACTCTGATTGTACAACTAA+AGG + chr7_4:63829892-63829911 None:intergenic 35.0%
! CGGTTTGTTTGTTTGTTTGA+AGG - chr7_4:63830012-63830031 Msa1170580:intron 35.0%
! CATCCTTATATAAGGTACCA+TGG + chr7_4:63830060-63830079 None:intergenic 35.0%
GTAGCAAAAGTCATGTTCAA+AGG + chr7_4:63830291-63830310 None:intergenic 35.0%
! TTGAACATGACTTTTGCTAC+AGG - chr7_4:63830291-63830310 Msa1170580:intron 35.0%
! AGCCTTTTCTGTAATGTCTT+TGG + chr7_4:63830350-63830369 None:intergenic 35.0%
GACATTACAGAAAAGGCTTA+TGG - chr7_4:63830352-63830371 Msa1170580:intron 35.0%
AGAAAAGGCTTATGGTAGTT+GGG - chr7_4:63830360-63830379 Msa1170580:intron 35.0%
AGCATGAATATGACAAGGAA+TGG + chr7_4:63830407-63830426 None:intergenic 35.0%
ATTCCTTGTCATATTCATGC+TGG - chr7_4:63830406-63830425 Msa1170580:intron 35.0%
!! ACTTGTCTAGGTGGATTTTT+AGG - chr7_4:63830501-63830520 Msa1170580:intron 35.0%
!! CTTGTCTAGGTGGATTTTTA+GGG - chr7_4:63830502-63830521 Msa1170580:intron 35.0%
!!! CTTCTCTTTTGTTGCTTTCA+TGG - chr7_4:63830580-63830599 Msa1170580:intron 35.0%
TATCCAAAAACCTTTGATGG+AGG - chr7_4:63830725-63830744 Msa1170580:CDS 35.0%
ATTAACAGAGAATGCATGGA+TGG + chr7_4:63830775-63830794 None:intergenic 35.0%
CGATATTAACAGAGAATGCA+TGG + chr7_4:63830779-63830798 None:intergenic 35.0%
TTCTAGTCACCTAGCATTAA+CGG - chr7_4:63830987-63831006 Msa1170580:intron 35.0%
AAGAATAAGCCGTTAATGCT+AGG + chr7_4:63830999-63831018 None:intergenic 35.0%
AATGTCATATGCAACCTACA+TGG + chr7_4:63831148-63831167 None:intergenic 35.0%
! TTCATATCTTTTGTATCCGG+TGG - chr7_4:63831402-63831421 Msa1170580:CDS 35.0%
!! TATTTGGTCGGAACTTGTTT+TGG - chr7_4:63831574-63831593 Msa1170580:CDS 35.0%
!!! TTTTGGTATGCTGCTGTTTT+TGG - chr7_4:63831591-63831610 Msa1170580:CDS 35.0%
GAACTATAACTGCTATTAGC+CGG - chr7_4:63831613-63831632 Msa1170580:CDS 35.0%
AACTATAACTGCTATTAGCC+GGG - chr7_4:63831614-63831633 Msa1170580:CDS 35.0%
CACATTATATGCCAAAGAGA+TGG - chr7_4:63831703-63831722 Msa1170580:intron 35.0%
AAGAAAAACATGAGCACGAA+AGG + chr7_4:63831875-63831894 None:intergenic 35.0%
! TACAGCAATGATGTTACTTG+AGG - chr7_4:63831909-63831928 Msa1170580:CDS 35.0%
! AATGATGTTACTTGAGGAGA+TGG - chr7_4:63831915-63831934 Msa1170580:CDS 35.0%
ACAGAAGTAAATATGGAGTG+AGG + chr7_4:63831951-63831970 None:intergenic 35.0%
ACTTCTGTTTATTGTCCCAA+AGG - chr7_4:63831963-63831982 Msa1170580:CDS 35.0%
CAAGTACGAAAATGACCTTT+GGG + chr7_4:63831981-63832000 None:intergenic 35.0%
CTGTGAAATGCAGTATACTT+AGG + chr7_4:63832021-63832040 None:intergenic 35.0%
! ACTGTAAATGTTGAAGGTGT+TGG - chr7_4:63832100-63832119 Msa1170580:CDS 35.0%
!! CTGTAAATGTTGAAGGTGTT+GGG - chr7_4:63832101-63832120 Msa1170580:CDS 35.0%
GTACATCTGTAACATTCTCT+AGG - chr7_4:63832172-63832191 Msa1170580:CDS 35.0%
TGTCTCAATTCCATAGCTTA+TGG - chr7_4:63832208-63832227 Msa1170580:CDS 35.0%
!! ACCTTTGATTTTCAAGAGCA+TGG - chr7_4:63832276-63832295 Msa1170580:CDS 35.0%
TCCATGCTCTTGAAAATCAA+AGG + chr7_4:63832280-63832299 None:intergenic 35.0%
AGATGGAGAAATCATTGTTG+AGG - chr7_4:63832358-63832377 Msa1170580:CDS 35.0%
GAGAAATCATTGTTGAGGTA+TGG - chr7_4:63832363-63832382 Msa1170580:CDS 35.0%
TCTGAGAAAAGAGTTGACTA+TGG + chr7_4:63832609-63832628 None:intergenic 35.0%
TTCAGAGTAGTTATCCATCA+TGG - chr7_4:63832715-63832734 Msa1170580:intron 35.0%
TCAGAGTAGTTATCCATCAT+GGG - chr7_4:63832716-63832735 Msa1170580:intron 35.0%
ATCTTAGAACATTCAGAGAG+CGG - chr7_4:63832772-63832791 Msa1170580:five_prime_UTR 35.0%
ACAGAAACAGGTTTATATCC+AGG - chr7_4:63832877-63832896 Msa1170580:intron 35.0%
CAGAAACAGGTTTATATCCA+GGG - chr7_4:63832878-63832897 Msa1170580:intron 35.0%
AGTACCAATCAAGAAGATAG+GGG + chr7_4:63832980-63832999 None:intergenic 35.0%
GTAGTACCAATCAAGAAGAT+AGG + chr7_4:63832982-63833001 None:intergenic 35.0%
GATGTTCCATTAGAACCATA+TGG - chr7_4:63833032-63833051 Msa1170580:intron 35.0%
ATACTCAAATGAGTATCACG+AGG - chr7_4:63833127-63833146 Msa1170580:intron 35.0%
GTTGTTTGGTCATTGAAATC+TGG + chr7_4:63833317-63833336 None:intergenic 35.0%
! CATGACAAGTTTTCTGATAG+AGG - chr7_4:63833347-63833366 Msa1170580:intron 35.0%
! ACCAAGAACAACACTTTTAC+TGG - chr7_4:63833384-63833403 Msa1170580:intron 35.0%
!! TCCAGTAAAAGTGTTGTTCT+TGG + chr7_4:63833388-63833407 None:intergenic 35.0%
AACAATGACAGATGACTTAG+AGG - chr7_4:63833436-63833455 Msa1170580:intron 35.0%
! GAATTTATAGTGGGAGTTTC+TGG + chr7_4:63833506-63833525 None:intergenic 35.0%
CCAAACAAAAAATGTGGGAA+AGG + chr7_4:63833565-63833584 None:intergenic 35.0%
!!! CCTTTCCCACATTTTTTGTT+TGG - chr7_4:63833562-63833581 Msa1170580:five_prime_UTR 35.0%
!!! TCCCACATTTTTTGTTTGGA+AGG - chr7_4:63833566-63833585 Msa1170580:five_prime_UTR 35.0%
CCCTTCCAAACAAAAAATGT+GGG + chr7_4:63833570-63833589 None:intergenic 35.0%
!!! CCCACATTTTTTGTTTGGAA+GGG - chr7_4:63833567-63833586 Msa1170580:five_prime_UTR 35.0%
ACCCTTCCAAACAAAAAATG+TGG + chr7_4:63833571-63833590 None:intergenic 35.0%
!! GAAGGGTGCTTTCAATTAAA+TGG - chr7_4:63833584-63833603 Msa1170580:five_prime_UTR 35.0%
! GTCCCTCTCTAATTGTTATT+TGG - chr7_4:63833633-63833652 Msa1170580:five_prime_UTR 35.0%
TCCTTACATCTGAAAATGGA+AGG + chr7_4:63833757-63833776 None:intergenic 35.0%
! AGGAGATGAGCATAGGTTTT+TGG + chr7_4:63827509-63827528 None:intergenic 40.0%
AGATGATGAAACAGTAGCGA+AGG + chr7_4:63827693-63827712 None:intergenic 40.0%
GAGACACAAATACAGAAACG+TGG + chr7_4:63827819-63827838 None:intergenic 40.0%
GATTATTATCGTTGTCGACG+AGG + chr7_4:63827968-63827987 None:intergenic 40.0%
! TCCATTGGGTTGTTCCAAAT+TGG - chr7_4:63828294-63828313 Msa1170580:CDS 40.0%
CAAATATGGGCAACTTGACA+AGG + chr7_4:63828617-63828636 None:intergenic 40.0%
! CTTGTCAAGTTGCCCATATT+TGG - chr7_4:63828615-63828634 Msa1170580:intron 40.0%
ATGAATCGCCAGCCAAATAT+GGG + chr7_4:63828630-63828649 None:intergenic 40.0%
TATGAATCGCCAGCCAAATA+TGG + chr7_4:63828631-63828650 None:intergenic 40.0%
ACAATGTTTAGCAGACCAAG+TGG - chr7_4:63828862-63828881 Msa1170580:intron 40.0%
CTCCATTGAGGAAATCTGAA+GGG + chr7_4:63829020-63829039 None:intergenic 40.0%
TCTCCATTGAGGAAATCTGA+AGG + chr7_4:63829021-63829040 None:intergenic 40.0%
ACTACTGTGAGAAAGGGTTA+TGG - chr7_4:63829100-63829119 Msa1170580:intron 40.0%
! CCATCCCACATTTTGCATTA+CGG + chr7_4:63829221-63829240 None:intergenic 40.0%
TAAGTGTGAGTGGGGTTAAA+GGG + chr7_4:63829302-63829321 None:intergenic 40.0%
!! TAGCTTTGGTAAGTGTGAGT+GGG + chr7_4:63829311-63829330 None:intergenic 40.0%
!! ATAGCTTTGGTAAGTGTGAG+TGG + chr7_4:63829312-63829331 None:intergenic 40.0%
TTAGTTGAGCAAAGAATCGC+AGG + chr7_4:63829383-63829402 None:intergenic 40.0%
GCGATTCTTTGCTCAACTAA+AGG - chr7_4:63829383-63829402 Msa1170580:intron 40.0%
CTTACCTGCTGTAGAAAAAC+TGG + chr7_4:63829425-63829444 None:intergenic 40.0%
!! TTGTCAACAATTTTGGCCCA+GGG + chr7_4:63829582-63829601 None:intergenic 40.0%
!! TTTGTCAACAATTTTGGCCC+AGG + chr7_4:63829583-63829602 None:intergenic 40.0%
CGGAAGGAGAACTACTTAAT+TGG - chr7_4:63829681-63829700 Msa1170580:intron 40.0%
TTGCTTTCCCCATTTCACAA+TGG - chr7_4:63829724-63829743 Msa1170580:intron 40.0%
CTGGAAACCATTGTGAAATG+GGG + chr7_4:63829734-63829753 None:intergenic 40.0%
CCTGGAAACCATTGTGAAAT+GGG + chr7_4:63829735-63829754 None:intergenic 40.0%
ACCTGGAAACCATTGTGAAA+TGG + chr7_4:63829736-63829755 None:intergenic 40.0%
CAGGACTAGATTGAACTTTC+GGG + chr7_4:63829764-63829783 None:intergenic 40.0%
AAACGATATTGTGCTCCATC+AGG + chr7_4:63829783-63829802 None:intergenic 40.0%
TACTTACCAAGACCCTTGAA+TGG - chr7_4:63829805-63829824 Msa1170580:CDS 40.0%
TAAAGTCCATTCAAGGGTCT+TGG + chr7_4:63829814-63829833 None:intergenic 40.0%
ACCGATCAAACATGCTATGT+AGG + chr7_4:63829848-63829867 None:intergenic 40.0%
AGGACTATTTAGATGCTCCA+TGG - chr7_4:63830040-63830059 Msa1170580:intron 40.0%
GCTCCATGGTACCTTATATA+AGG - chr7_4:63830054-63830073 Msa1170580:intron 40.0%
! ACAGGAACTTTTGTGTCAGA+AGG - chr7_4:63830309-63830328 Msa1170580:intron 40.0%
! CAGGAACTTTTGTGTCAGAA+GGG - chr7_4:63830310-63830329 Msa1170580:intron 40.0%
CAGAAAAGGCTTATGGTAGT+TGG - chr7_4:63830359-63830378 Msa1170580:intron 40.0%
ATGCCAGCATGAATATGACA+AGG + chr7_4:63830412-63830431 None:intergenic 40.0%
GAAGATGGTCAAACTTGTCT+AGG - chr7_4:63830489-63830508 Msa1170580:intron 40.0%
CTACCAAACAATAGCCATGT+AGG - chr7_4:63831131-63831150 Msa1170580:intron 40.0%
CAACCTACATGGCTATTGTT+TGG + chr7_4:63831137-63831156 None:intergenic 40.0%
TATATGTCTTCTGCTGTACC+TGG - chr7_4:63831205-63831224 Msa1170580:intron 40.0%
AATGTCATGGCAGTCGTTAA+AGG - chr7_4:63831517-63831536 Msa1170580:CDS 40.0%
ACCATAGATATTGTTCCCTC+GGG + chr7_4:63831672-63831691 None:intergenic 40.0%
CACCATAGATATTGTTCCCT+CGG + chr7_4:63831673-63831692 None:intergenic 40.0%
TGGCAAAGAAATTACTGACG+TGG - chr7_4:63831728-63831747 Msa1170580:intron 40.0%
TTATTCCAGGTATTCTGCCT+GGG - chr7_4:63831771-63831790 Msa1170580:intron 40.0%
CCAAGTACGAAAATGACCTT+TGG + chr7_4:63831982-63832001 None:intergenic 40.0%
!! CCAAAGGTCATTTTCGTACT+TGG - chr7_4:63831979-63831998 Msa1170580:CDS 40.0%
GAGCATGGAAACTCTCATTA+TGG - chr7_4:63832291-63832310 Msa1170580:CDS 40.0%
!! TGCTACGAGAGGCATTATAT+GGG + chr7_4:63832320-63832339 None:intergenic 40.0%
TCATTGTTGAGGTATGGTCT+TGG - chr7_4:63832369-63832388 Msa1170580:CDS 40.0%
! TAAAAAGCATGCACACACAG+AGG + chr7_4:63832512-63832531 None:intergenic 40.0%
! TGAGTATTTGGTTCCCATGA+TGG + chr7_4:63832732-63832751 None:intergenic 40.0%
ATCATGGGAACCAAATACTC+AGG - chr7_4:63832731-63832750 Msa1170580:intron 40.0%
TCATGGGAACCAAATACTCA+GGG - chr7_4:63832732-63832751 Msa1170580:intron 40.0%
! TTTTGCAACTGGCAATCACT+TGG - chr7_4:63832917-63832936 Msa1170580:intron 40.0%
ATAGGGGTGATTATTCTGGT+TGG + chr7_4:63832964-63832983 None:intergenic 40.0%
GAAGATAGGGGTGATTATTC+TGG + chr7_4:63832968-63832987 None:intergenic 40.0%
ATCACCCCTATCTTCTTGAT+TGG - chr7_4:63832973-63832992 Msa1170580:intron 40.0%
!! TCATTCTGTGTCAAGTTGGA+AGG + chr7_4:63833092-63833111 None:intergenic 40.0%
CAAATGAGTATCACGAGGAT+CGG - chr7_4:63833132-63833151 Msa1170580:intron 40.0%
AAATGAGTATCACGAGGATC+GGG - chr7_4:63833133-63833152 Msa1170580:intron 40.0%
GTTTGGTCATTGAAATCTGG+AGG + chr7_4:63833314-63833333 None:intergenic 40.0%
! TTTATAGTGGGAGTTTCTGG+AGG + chr7_4:63833503-63833522 None:intergenic 40.0%
! GCAGTGCTGGAATTTATAGT+GGG + chr7_4:63833515-63833534 None:intergenic 40.0%
! AGCAGTGCTGGAATTTATAG+TGG + chr7_4:63833516-63833535 None:intergenic 40.0%
TATGAACCTCAGCTTGATGT+TGG - chr7_4:63833708-63833727 Msa1170580:five_prime_UTR 40.0%
TAAGTTCCAACATCAAGCTG+AGG + chr7_4:63833717-63833736 None:intergenic 40.0%
! GCCTTCCATTTTCAGATGTA+AGG - chr7_4:63833753-63833772 Msa1170580:five_prime_UTR 40.0%
GATGAAACAGTAGCGAAGGA+AGG + chr7_4:63827689-63827708 None:intergenic 45.0%
GAATTGAAGTTAGCAGTCCG+AGG - chr7_4:63828149-63828168 Msa1170580:CDS 45.0%
! GCCAATTTGGAACAACCCAA+TGG + chr7_4:63828298-63828317 None:intergenic 45.0%
! TCAAGTTGCCCATATTTGGC+TGG - chr7_4:63828619-63828638 Msa1170580:intron 45.0%
CCATTCCCCAAAGACCAAAA+CGG + chr7_4:63828808-63828827 None:intergenic 45.0%
! TTGGTCTTTGGGGAATGGAT+TGG - chr7_4:63828810-63828829 Msa1170580:intron 45.0%
TTTAGCAGACCAAGTGGTTC+CGG - chr7_4:63828868-63828887 Msa1170580:intron 45.0%
AGCCCTTCAGATTTCCTCAA+TGG - chr7_4:63829015-63829034 Msa1170580:intron 45.0%
! GGGTTCACCATATGCTTTTC+AGG - chr7_4:63829162-63829181 Msa1170580:CDS 45.0%
GGCTCCGTAATGCAAAATGT+GGG - chr7_4:63829214-63829233 Msa1170580:intron 45.0%
CCGTAATGCAAAATGTGGGA+TGG - chr7_4:63829218-63829237 Msa1170580:intron 45.0%
GGAATTAAGCCCTGTGATCT+TGG - chr7_4:63829255-63829274 Msa1170580:intron 45.0%
GCTTCTTTGCCAAGATCACA+GGG + chr7_4:63829267-63829286 None:intergenic 45.0%
AGCTTCTTTGCCAAGATCAC+AGG + chr7_4:63829268-63829287 None:intergenic 45.0%
GTAAGTGTGAGTGGGGTTAA+AGG + chr7_4:63829303-63829322 None:intergenic 45.0%
! AGCTTTGGTAAGTGTGAGTG+GGG + chr7_4:63829310-63829329 None:intergenic 45.0%
ACCTGCTGTAGAAAAACTGG+CGG + chr7_4:63829422-63829441 None:intergenic 45.0%
TCGGAAACTATGTGTGCTGA+AGG - chr7_4:63829623-63829642 Msa1170580:CDS 45.0%
CCCATTTCACAATGGTTTCC+AGG - chr7_4:63829732-63829751 Msa1170580:intron 45.0%
TGCTGGCATATCTCTTTCTG+AGG - chr7_4:63830423-63830442 Msa1170580:intron 45.0%
TTCGAGATGATGCTGTGCTT+GGG + chr7_4:63830472-63830491 None:intergenic 45.0%
GATGGTCAAACTTGTCTAGG+TGG - chr7_4:63830492-63830511 Msa1170580:intron 45.0%
TATAGGTCGACCATCTCTTC+AGG - chr7_4:63831298-63831317 Msa1170580:intron 45.0%
TAATCCGATGCCTGAAGAGA+TGG + chr7_4:63831311-63831330 None:intergenic 45.0%
TGCAATTGCAGATGAGCTTC+TGG - chr7_4:63831638-63831657 Msa1170580:CDS 45.0%
TCCCGAGGGAACAATATCTA+TGG - chr7_4:63831668-63831687 Msa1170580:CDS 45.0%
CGAGGGAACAATATCTATGG+TGG - chr7_4:63831671-63831690 Msa1170580:CDS 45.0%
TATATGCCAAAGAGATGGCG+TGG - chr7_4:63831708-63831727 Msa1170580:intron 45.0%
CAGGCAGAATACCTGGAATA+AGG + chr7_4:63831772-63831791 None:intergenic 45.0%
CTTATTCCAGGTATTCTGCC+TGG - chr7_4:63831770-63831789 Msa1170580:intron 45.0%
TATTCCAGGTATTCTGCCTG+GGG - chr7_4:63831772-63831791 Msa1170580:intron 45.0%
!! GCTACGAGAGGCATTATATG+GGG + chr7_4:63832319-63832338 None:intergenic 45.0%
!! CTGCTACGAGAGGCATTATA+TGG + chr7_4:63832321-63832340 None:intergenic 45.0%
ATAATGCCTCTCGTAGCAGA+AGG - chr7_4:63832322-63832341 Msa1170580:CDS 45.0%
AAGGAGTTCACAGGGAAAGA+TGG - chr7_4:63832341-63832360 Msa1170580:CDS 45.0%
CATGGGAACCAAATACTCAG+GGG - chr7_4:63832733-63832752 Msa1170580:intron 45.0%
AACTGCTTCCCCTGAGTATT+TGG + chr7_4:63832744-63832763 None:intergenic 45.0%
GAGCGGAAGTTATCAGTACA+TGG - chr7_4:63832789-63832808 Msa1170580:intron 45.0%
!! CCAGTTGCAAAAGTGCTGTA+TGG + chr7_4:63832909-63832928 None:intergenic 45.0%
! CCATACAGCACTTTTGCAAC+TGG - chr7_4:63832906-63832925 Msa1170580:intron 45.0%
GCAATCACTTGGATTCGTTG+TGG - chr7_4:63832928-63832947 Msa1170580:intron 45.0%
TCTCTTGAAGCTGCATCATG+AGG + chr7_4:63833014-63833033 None:intergenic 45.0%
GGGTTCATTCTGTGTCAAGT+TGG + chr7_4:63833096-63833115 None:intergenic 45.0%
CTAAAGCTCTCCCTAAGGAT+GGG + chr7_4:63833191-63833210 None:intergenic 45.0%
ACTAAAGCTCTCCCTAAGGA+TGG + chr7_4:63833192-63833211 None:intergenic 45.0%
! GTTTTCTGATAGAGGGTCAG+AGG - chr7_4:63833355-63833374 Msa1170580:intron 45.0%
ATGACAGATGACTTAGAGGC+AGG - chr7_4:63833440-63833459 Msa1170580:intron 45.0%
TACTCAAAAGCTAGCAGTGC+TGG + chr7_4:63833528-63833547 None:intergenic 45.0%
AGAGAGGGACAATCATGACT+TGG + chr7_4:63833623-63833642 None:intergenic 45.0%
GGGGTCCTTACATCTGAAAA+TGG + chr7_4:63833761-63833780 None:intergenic 45.0%
GTTCGGAAGGAGATGAGCAT+AGG + chr7_4:63827516-63827535 None:intergenic 50.0%
TCAACGCCAAAGTCCCAAAG+GGG + chr7_4:63828467-63828486 None:intergenic 50.0%
GTCAACGCCAAAGTCCCAAA+GGG + chr7_4:63828468-63828487 None:intergenic 50.0%
TGTCAACGCCAAAGTCCCAA+AGG + chr7_4:63828469-63828488 None:intergenic 50.0%
!! CCGTTTTGGTCTTTGGGGAA+TGG - chr7_4:63828805-63828824 Msa1170580:intron 50.0%
!! CTAAAAGCACCGGAACCACT+TGG + chr7_4:63828880-63828899 None:intergenic 50.0%
GGGCTCCGTAATGCAAAATG+TGG - chr7_4:63829213-63829232 Msa1170580:intron 50.0%
GGGATGGATGCTGTTGAATC+TGG - chr7_4:63829234-63829253 Msa1170580:intron 50.0%
! TCCGCCAGTTTTTCTACAGC+AGG - chr7_4:63829418-63829437 Msa1170580:intron 50.0%
AGTCATGAGACTGATGCGGA+AGG - chr7_4:63829665-63829684 Msa1170580:intron 50.0%
TCACAATGGTTTCCAGGTGC+TGG - chr7_4:63829738-63829757 Msa1170580:intron 50.0%
CTTCGAGATGATGCTGTGCT+TGG + chr7_4:63830473-63830492 None:intergenic 50.0%
GCACAGCATCATCTCGAAGA+TGG - chr7_4:63830474-63830493 Msa1170580:intron 50.0%
! GGGCCTCCATCAAAGGTTTT+TGG + chr7_4:63830731-63830750 None:intergenic 50.0%
TCGACCATCTCTTCAGGCAT+CGG - chr7_4:63831304-63831323 Msa1170580:intron 50.0%
CAGAATTGCAGCAAAGCCAC+CGG + chr7_4:63831421-63831440 None:intergenic 50.0%
!! CTTCTGGTCTTAGATCCCGA+GGG - chr7_4:63831654-63831673 Msa1170580:CDS 50.0%
TCTTTGCCACGCCATCTCTT+TGG + chr7_4:63831717-63831736 None:intergenic 50.0%
! ATGTATTGATCGGACACCCC+AGG + chr7_4:63831791-63831810 None:intergenic 50.0%
!! AAGGTGTTGGGCATGTTTGC+AGG - chr7_4:63832113-63832132 Msa1170580:CDS 50.0%
GGCATGTTTGCAGGTTAGCA+TGG - chr7_4:63832122-63832141 Msa1170580:CDS 50.0%
TGAACTCCTTCTGCTACGAG+AGG + chr7_4:63832331-63832350 None:intergenic 50.0%
TCGTAGCAGAAGGAGTTCAC+AGG - chr7_4:63832332-63832351 Msa1170580:CDS 50.0%
CGTAGCAGAAGGAGTTCACA+GGG - chr7_4:63832333-63832352 Msa1170580:CDS 50.0%
CATCTTCCCCTCCTAGAATG+TGG - chr7_4:63832823-63832842 Msa1170580:intron 50.0%
TTCCCCTCCTAGAATGTGGA+GGG - chr7_4:63832827-63832846 Msa1170580:intron 50.0%
! TACCCCTCCACATTCTAGGA+GGG + chr7_4:63832833-63832852 None:intergenic 50.0%
TCTTCATCCCCTGCCGTATT+GGG + chr7_4:63832858-63832877 None:intergenic 50.0%
CAGGGGATGAAGACAGAAAC+AGG - chr7_4:63832865-63832884 Msa1170580:intron 50.0%
AGTGCTGTATGGCATTTCCC+TGG + chr7_4:63832898-63832917 None:intergenic 50.0%
!! GGAAGGCATCGAATAGTCTC+TGG + chr7_4:63833075-63833094 None:intergenic 50.0%
ATCGGGCTGCATCTCAACTT+GGG - chr7_4:63833150-63833169 Msa1170580:intron 50.0%
CTCATCAGCTCCCATCCTTA+GGG - chr7_4:63833178-63833197 Msa1170580:intron 50.0%
CCTGACTAAAGCTCTCCCTA+AGG + chr7_4:63833196-63833215 None:intergenic 50.0%
! CCTTAGGGAGAGCTTTAGTC+AGG - chr7_4:63833193-63833212 Msa1170580:intron 50.0%
TTCTAGCCCACCAATGGCTT+CGG + chr7_4:63833250-63833269 None:intergenic 50.0%
AGGACCCCAGCAAAATAGTC+TGG - chr7_4:63833773-63833792 Msa1170580:five_prime_UTR 50.0%
TTAGGTTCAGCTCGCCCCTT+TGG - chr7_4:63828450-63828469 Msa1170580:CDS 55.0%
TAGGTTCAGCTCGCCCCTTT+GGG - chr7_4:63828451-63828470 Msa1170580:CDS 55.0%
GGCGCGTCATCTTTGACTAG+AGG - chr7_4:63828922-63828941 Msa1170580:CDS 55.0%
TACGGAAGGATCCCAAGTCC+AGG - chr7_4:63828985-63829004 Msa1170580:intron 55.0%
GGCTCTCACTTCCTGGACTT+GGG + chr7_4:63828999-63829018 None:intergenic 55.0%
TCTGAAGGGCTCTCACTTCC+TGG + chr7_4:63829006-63829025 None:intergenic 55.0%
! CACTGATGGGCCTCCATCAA+AGG + chr7_4:63830738-63830757 None:intergenic 55.0%
CTTTGATGGAGGCCCATCAG+TGG - chr7_4:63830736-63830755 Msa1170580:CDS 55.0%
GCTCATCTGCAATTGCAGCC+CGG + chr7_4:63831635-63831654 None:intergenic 55.0%
!! GCTTCTGGTCTTAGATCCCG+AGG - chr7_4:63831653-63831672 Msa1170580:CDS 55.0%
CTTCCCCTCCTAGAATGTGG+AGG - chr7_4:63832826-63832845 Msa1170580:intron 55.0%
TCCCCTCCTAGAATGTGGAG+GGG - chr7_4:63832828-63832847 Msa1170580:intron 55.0%
! ACCCCTCCACATTCTAGGAG+GGG + chr7_4:63832832-63832851 None:intergenic 55.0%
CTACCCCTCCACATTCTAGG+AGG + chr7_4:63832834-63832853 None:intergenic 55.0%
GGACTACCCCTCCACATTCT+AGG + chr7_4:63832837-63832856 None:intergenic 55.0%
GTGGAGGGGTAGTCCCAATA+CGG - chr7_4:63832842-63832861 Msa1170580:intron 55.0%
GTCTTCATCCCCTGCCGTAT+TGG + chr7_4:63832859-63832878 None:intergenic 55.0%
GATCGGGCTGCATCTCAACT+TGG - chr7_4:63833149-63833168 Msa1170580:intron 55.0%
TCGGGCTGCATCTCAACTTG+GGG - chr7_4:63833151-63833170 Msa1170580:intron 55.0%
CCTAAGGATGGGAGCTGATG+AGG + chr7_4:63833180-63833199 None:intergenic 55.0%
CCTCATCAGCTCCCATCCTT+AGG - chr7_4:63833177-63833196 Msa1170580:intron 55.0%
TCTAGCCCACCAATGGCTTC+GGG + chr7_4:63833249-63833268 None:intergenic 55.0%
GACGACTTCTAGCCCACCAA+TGG + chr7_4:63833256-63833275 None:intergenic 55.0%
!! GGTGGGCTAGAAGTCGTCTA+CGG - chr7_4:63833258-63833277 Msa1170580:intron 55.0%
GCTAGAAGTCGTCTACGGAG+TGG - chr7_4:63833263-63833282 Msa1170580:intron 55.0%
TCTACGGAGTGGACAAGCTC+AGG - chr7_4:63833274-63833293 Msa1170580:intron 55.0%
!! AGCTCGCCCCTTTGGGACTT+TGG - chr7_4:63828458-63828477 Msa1170580:CDS 60.0%
GGGCTCTCACTTCCTGGACT+TGG + chr7_4:63829000-63829019 None:intergenic 60.0%
TGAACTTTCGGGCCAGCACC+TGG + chr7_4:63829753-63829772 None:intergenic 60.0%
GACACCCCAGGCAGAATACC+TGG + chr7_4:63831779-63831798 None:intergenic 60.0%
AGGGGTAGTCCCAATACGGC+AGG - chr7_4:63832846-63832865 Msa1170580:intron 60.0%
GGGGTAGTCCCAATACGGCA+GGG - chr7_4:63832847-63832866 Msa1170580:intron 60.0%
GGGTAGTCCCAATACGGCAG+GGG - chr7_4:63832848-63832867 Msa1170580:intron 60.0%
!! CAATGGCTTCGGGTTGCGTG+GGG + chr7_4:63833239-63833258 None:intergenic 60.0%
!! CCAATGGCTTCGGGTTGCGT+GGG + chr7_4:63833240-63833259 None:intergenic 60.0%
!! ACCAATGGCTTCGGGTTGCG+TGG + chr7_4:63833241-63833260 None:intergenic 60.0%
ACGCAACCCGAAGCCATTGG+TGG - chr7_4:63833240-63833259 Msa1170580:intron 60.0%
CGCAACCCGAAGCCATTGGT+GGG - chr7_4:63833241-63833260 Msa1170580:intron 60.0%
CCCACGCAACCCGAAGCCAT+TGG - chr7_4:63833237-63833256 Msa1170580:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 63827459 63833796 63827459 ID=Msa1170580;Name=Msa1170580
chr7_4 mRNA 63827459 63833796 63827459 ID=Msa1170580-mRNA-1;Parent=Msa1170580;Name=Msa1170580-mRNA-1;_AED=0.06;_eAED=0.06;_QI=415|1|1|1|0.8|0.72|11|252|865
chr7_4 exon 63827459 63828542 63827459 ID=Msa1170580-mRNA-1:exon:20492;Parent=Msa1170580-mRNA-1
chr7_4 exon 63828876 63828986 63828876 ID=Msa1170580-mRNA-1:exon:20491;Parent=Msa1170580-mRNA-1
chr7_4 exon 63829121 63829191 63829121 ID=Msa1170580-mRNA-1:exon:20490;Parent=Msa1170580-mRNA-1
chr7_4 exon 63829271 63829348 63829271 ID=Msa1170580-mRNA-1:exon:20489;Parent=Msa1170580-mRNA-1
chr7_4 exon 63829476 63829682 63829476 ID=Msa1170580-mRNA-1:exon:20488;Parent=Msa1170580-mRNA-1
chr7_4 exon 63829773 63829952 63829773 ID=Msa1170580-mRNA-1:exon:20487;Parent=Msa1170580-mRNA-1
chr7_4 exon 63830720 63830942 63830720 ID=Msa1170580-mRNA-1:exon:20486;Parent=Msa1170580-mRNA-1
chr7_4 exon 63831390 63831710 63831390 ID=Msa1170580-mRNA-1:exon:20485;Parent=Msa1170580-mRNA-1
chr7_4 exon 63831816 63832463 63831816 ID=Msa1170580-mRNA-1:exon:20484;Parent=Msa1170580-mRNA-1
chr7_4 exon 63832738 63832801 63832738 ID=Msa1170580-mRNA-1:exon:20483;Parent=Msa1170580-mRNA-1
chr7_4 exon 63833519 63833796 63833519 ID=Msa1170580-mRNA-1:exon:20482;Parent=Msa1170580-mRNA-1
chr7_4 five_prime_UTR 63833519 63833796 63833519 ID=Msa1170580-mRNA-1:five_prime_utr;Parent=Msa1170580-mRNA-1
chr7_4 five_prime_UTR 63832738 63832801 63832738 ID=Msa1170580-mRNA-1:five_prime_utr;Parent=Msa1170580-mRNA-1
chr7_4 five_prime_UTR 63832391 63832463 63832391 ID=Msa1170580-mRNA-1:five_prime_utr;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63831816 63832390 63831816 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63831390 63831710 63831390 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63830720 63830942 63830720 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63829773 63829952 63829773 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63829476 63829682 63829476 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63829271 63829348 63829271 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63829121 63829191 63829121 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63828876 63828986 63828876 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 CDS 63827711 63828542 63827711 ID=Msa1170580-mRNA-1:cds;Parent=Msa1170580-mRNA-1
chr7_4 three_prime_UTR 63827459 63827710 63827459 ID=Msa1170580-mRNA-1:three_prime_utr;Parent=Msa1170580-mRNA-1
Gene Sequence

>Msa1170580

ATGTTTAGCAGACCAAGTGGTTCCGGTGCTTTTAGTATATTCAAATGGAAACAGAAAGGCGCGTCATCTTTGACTAGAGGTTTACTTCATGATGATTCGCCGGAGATCGAATTGTCTAATTACGGAAGGATCCCAAGTCCAGGAAGTGAGAGCCCTTCAGATTTCCTCAATGGAGAAAGTGTATATGTAGAACCAATTGCTGATTTGGATCTCTTCTTTGAAAGACTTTATGGTTACTACTGTGAGAAAGGGTTATGGTGTATTGTTACAAAGTGGATTGTTGAACTTCTAAGTCTGGGGTTCACCATATGCTTTTCAGGATTTTTTTTACTATATGTTGATTGGAATGGGCTCCGTAATGCAAAATGTGGGATGGATGCTGTTGAATCTGGAATTAAGCCCTGTGATCTTGGCAAAGAAGCTCTTAATCAACACCCTTTAACCCCACTCACACTTACCAAAGCTATTATTGTTGGATACTTGGGGATTTTTTCCTTCTATTGGATGTTTTGTTTCCTGCGATTCTTTGCTCAACTAAAGGATATTCTCGAAATCCGCCAGTTTTTCTACAGCAGTCTTCATGTCACTGACAATGAAATTCAAACTATGCCCTGGGCCAAAATTGTTGACAAAGTTGTTCTCGTTCAAAATACTCGGAAACTATGTGTGCTGAAGGATCTTTCTGCCCATGATATAGTCATGAGACTGATGCGGAAGGAGAACTACTTAATTGGAATGCTCAACAAGGGTGTGCTTGCTTTCCCCATTTCACAATGGTTTCCAGGTGCTGGCCCGAAAGTTCAATCTAGTCCTGATGGAGCACAATATCGTTTAGTACTTACCAAGACCCTTGAATGGACTTTAAATTGGTGCATCCTACATAGCATGTTTGATCGGAACTTTTGTGTCAGAAGGGATTTTGTGTCAAATCCAAAGACATTACAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTTTCTCCATTCCTTGTCATATTCATGCTGGCATATCTCTTTCTGAGGCATGCTGAGCAATTTTATAATCACCCAAGCACAGCATCATCTCGAAGATGGTCAAACTTGTCTAGGTGGATTTTTAGGGAATACAATGAGGTCGACCATCTCTTCAGGCATCGGATTAATAACAGTGTATCACATGCTTCTGATTATCTCAAGCAGTTTCCTACACCTATCATATCTATCATTGCAAAATTCATATCTTTTGTATCCGGTGGCTTTGCTGCAATTCTGATCATTATTGCTTTTCTCGAGGAGTCTCTGCTAGAGGGCCATATATTTGGTCGGAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACTGCTATTAGCCGGGCTGCAATTGCAGATGAGCTTCTGGTCTTAGATCCCGAGGGAACAATATCTATGGTGGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAATTACTGACGTGGTCCGCATTGAATTTGAAACCTTATTCCAGTATACAGCAATGATGTTACTTGAGGAGATGGCTTCAATTTTCCTCACTCCATATTTACTTCTGTTTATTGTCCCAAAGCGAGTTGATGATATCTTGCAGTACATTGCCGATTTCACTGTAAATGTTGAAGGTGTTGGGCATGTTTGCAGTTTTAGCACCTTTGATTTTCAAGAGCATGGAAACTCTCATTATGGTTCCCCATATAATGCCTCTCGTAGCAGAAGGAGTTCACAGGGAAAGATGGAGAAATCATTGTTGAGCTTTCAGAGTAGTTATCCATCATGGGAACCAAATACTCAGGGGAAGCAGTTTTTGCTAAATCTTAGAACATTCAGAGAGCGGAAGTTATCAGTACATGGAAACATACACACATCTTCCCCTCCTAGAATGTGGAGGGGTAGTCCCAATACGGCAGGGGATGAAGACAGAAACAGGTTTATATCCAGGGAAATGCCATACAGCACTTTTGCAACTGGCAATCACTTGGATTCGTTGTGGTTGATTGAAGCCAACCAGAATAATCACCCCTATCTTCTTGATTGGTACTACACAGCTCGACCTCATGATGCAGCTTCAAGAGATGTTCCATTAGAACCATATGGAATAACAGAACGTTATTCCAGAGACTATTCGATGCCTTCCAACTTGACACAGAATGAACCCAACTATGAAGAATACTCAAATGAGTATCACGAGGATCGGGCTGCATCTCAACTTGGGGCTTCCTCATCAGCTCCCATCCTTAGGGAGAGCTTTAGTCAGGAGCAAAACTATAATGAACTTCCCCACGCAACCCGAAGCCATTGGTGGGCTAGAAGTCGTCTACGGAGTGGACAAGCTCAGGCAAGCTTTTACGAGCCTCCAGATTTCAATGACCAAACAACATATAATTATCATGACAAGTTTTCTGATAGAGGGTCAGAGGATCAAGACCAAGAACAACACTTTTACTGGAGAGATCATCACAACAAATTATCTAAAACAACAATGACAGATGACTTAGAGGCAGGAGAATTTAATCTACATTTTGGTGATATTTATAGCAGACCTCCAGAAACTCCCACTATAAATTCCAGCACTGCTAGCTTTTGA
Protein sequence

>Msa1170580

MFSRPSGSGAFSIFKWKQKGASSLTRGLLHDDSPEIELSNYGRIPSPGSESPSDFLNGESVYVEPIADLDLFFERLYGYYCEKGLWCIVTKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLGKEALNQHPLTPLTLTKAIIVGYLGIFSFYWMFCFLRFFAQLKDILEIRQFFYSSLHVTDNEIQTMPWAKIVDKVVLVQNTRKLCVLKDLSAHDIVMRLMRKENYLIGMLNKGVLAFPISQWFPGAGPKVQSSPDGAQYRLVLTKTLEWTLNWCILHSMFDRNFCVRRDFVSNPKTLQKRLMVVGLAMLLLSPFLVIFMLAYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREYNEVDHLFRHRINNSVSHASDYLKQFPTPIISIIAKFISFVSGGFAAILIIIAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAIADELLVLDPEGTISMVVQHTHYMPKRWRGKEITDVVRIEFETLFQYTAMMLLEEMASIFLTPYLLLFIVPKRVDDILQYIADFTVNVEGVGHVCSFSTFDFQEHGNSHYGSPYNASRSRRSSQGKMEKSLLSFQSSYPSWEPNTQGKQFLLNLRTFRERKLSVHGNIHTSSPPRMWRGSPNTAGDEDRNRFISREMPYSTFATGNHLDSLWLIEANQNNHPYLLDWYYTARPHDAASRDVPLEPYGITERYSRDYSMPSNLTQNEPNYEEYSNEYHEDRAASQLGASSSAPILRESFSQEQNYNELPHATRSHWWARSRLRSGQAQASFYEPPDFNDQTTYNYHDKFSDRGSEDQDQEQHFYWRDHHNKLSKTTMTDDLEAGEFNLHFGDIYSRPPETPTINSSTASF*