AlfalfaGEDB | Msa1163920

M. sativa cultivar zhongmu-4 / Msa1163920

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576
PFAM: PF04852.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163920	XP_013449906.1	98.131	214	2	2	1	212	1	214	5.34e-152	430

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163920	sp\|O82268\|LSH3_ARATH	80.814	172	30	1	25	196	19	187	4.10e-87	259

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163920	A0A072U2M0	98.131	214	2	2	1	212	1	214	2.55e-152	430

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0168590	Msa1163920	0.816911	4.331802e-52	-8.615850e-47
Msa1036820	Msa1163920	0.972550	5.992401e-135	-8.615850e-47
Msa1077180	Msa1163920	0.816100	6.581453e-52	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163920	MtrunA17_Chr7g0261381	98.131	214	2	2	1	212	1	214	4.92e-156	430
Msa1163920	MtrunA17_Chr1g0167411	73.575	193	41	2	1	187	1	189	9.37e-94	273
Msa1163920	MtrunA17_Chr1g0183761	100.000	131	0	0	63	193	45	175	3.89e-87	256
Msa1163920	MtrunA17_Chr1g0187671	81.325	166	31	0	28	193	18	183	2.35e-85	251
Msa1163920	MtrunA17_Chr4g0051251	82.609	138	24	0	62	199	45	182	2.95e-85	252
Msa1163920	MtrunA17_Chr5g0431211	80.451	133	26	0	62	194	36	168	1.34e-82	245
Msa1163920	MtrunA17_Chr3g0105921	81.818	132	24	0	63	194	42	173	1.12e-73	222
Msa1163920	MtrunA17_Chr2g0325831	71.724	145	34	1	42	186	9	146	3.93e-73	219
Msa1163920	MtrunA17_Chr7g0274631	65.432	162	48	3	34	194	4	158	4.71e-72	216
Msa1163920	MtrunA17_Chr4g0041141	65.333	150	52	0	37	186	3	152	4.52e-71	214

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1163920	AT2G31160.1	80.814	172	30	1	25	196	19	187	4.17e-88	259
Msa1163920	AT1G07090.1	76.389	144	34	0	52	195	20	163	2.65e-84	248
Msa1163920	AT3G23290.2	73.262	187	35	2	1	187	1	172	1.63e-80	239
Msa1163920	AT5G58500.1	79.104	134	27	1	62	194	18	151	7.21e-79	234
Msa1163920	AT2G42610.1	75.714	140	34	0	58	197	20	159	6.97e-74	221
Msa1163920	AT2G42610.2	75.714	140	34	0	58	197	20	159	6.97e-74	221
Msa1163920	AT5G28490.1	83.088	136	23	0	57	192	19	154	1.31e-72	218
Msa1163920	AT3G04510.1	80.000	130	26	0	63	192	33	162	1.49e-69	211
Msa1163920	AT1G78815.1	67.200	125	41	0	62	186	39	163	1.17e-62	193
Msa1163920	AT4G18610.1	69.048	126	38	1	62	186	36	161	4.86e-62	192

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 78 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGAAACAAATCCTTT+TGG	0.416713	7_4:+55383241	Msa1163920:CDS
AAGAACAAGGTATTAATTCT+TGG	0.280943	7_4:+55382319	Msa1163920:five_prime_UTR
AATTAATACCTTGTTCTTCT+AGG	0.210004	7_4:-55382314	None:intergenic
ACATATACCTTAGGAATTCA+AGG	0.481244	7_4:-55382723	None:intergenic
ACTGTTGGGACTGTTGATGA+TGG	0.472335	7_4:-55382593	None:intergenic
ACTTGTTGTTGTTGTGGTGG+TGG	0.511066	7_4:-55383355	None:intergenic
AGAATCAGAAACGCCGTGAC+TGG	0.455928	7_4:+55382629	Msa1163920:CDS
AGACAGTGCTGTGTTTGTAC+TGG	0.573730	7_4:+55383602	Msa1163920:three_prime_UTR
AGAGAATGTGATGAGATTGA+TGG	0.544970	7_4:-55382162	None:intergenic
AGAGAGAGAAAGAGAGAGAG+AGG	0.484976	7_4:-55381936	None:intergenic

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGGAAATAGGAAAGAAAAGT+TGG	-	chr7_4:55381903-55381922	None:intergenic	30.0%
CACAAAATTCAAAACAACCT+TGG	+	chr7_4:55382366-55382385	Msa1163920:five_prime_UTR	30.0%
ACATATACCTTAGGAATTCA+AGG	-	chr7_4:55382726-55382745	None:intergenic	30.0%
ATGCAGTTGAAAAGAAAGAA+AGG	-	chr7_4:55382801-55382820	None:intergenic	30.0%
TATCATGGTGTTTAGGTATT+TGG	+	chr7_4:55383063-55383082	Msa1163920:intron	30.0%
TTGAAGCTTGTGAATATACA+TGG	+	chr7_4:55383651-55383670	Msa1163920:three_prime_UTR	30.0%
AGGAAATAGGAAAGAAAAGT+TGG	-	chr7_4:55381903-55381922	None:intergenic	30.0%
CACAAAATTCAAAACAACCT+TGG	+	chr7_4:55382366-55382385	Msa1163920:five_prime_UTR	30.0%
ACATATACCTTAGGAATTCA+AGG	-	chr7_4:55382726-55382745	None:intergenic	30.0%
ATGCAGTTGAAAAGAAAGAA+AGG	-	chr7_4:55382801-55382820	None:intergenic	30.0%

Showing 1 to 10 of 231 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	55381875	55383823	55381875	ID=Msa1163920;Name=Msa1163920
chr7_4	mRNA	55381875	55383823	55381875	ID=Msa1163920-mRNA-1;Parent=Msa1163920;Name=Msa1163920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=475\|1\|1\|1\|0.5\|0.33\|3\|409\|212
chr7_4	exon	55381875	55382223	55381875	ID=Msa1163920-mRNA-1:exon:16169;Parent=Msa1163920-mRNA-1
chr7_4	exon	55382310	55382737	55382310	ID=Msa1163920-mRNA-1:exon:16170;Parent=Msa1163920-mRNA-1
chr7_4	exon	55383078	55383823	55383078	ID=Msa1163920-mRNA-1:exon:16171;Parent=Msa1163920-mRNA-1
chr7_4	five_prime_UTR	55381875	55382223	55381875	ID=Msa1163920-mRNA-1:five_prime_utr;Parent=Msa1163920-mRNA-1
chr7_4	five_prime_UTR	55382310	55382435	55382310	ID=Msa1163920-mRNA-1:five_prime_utr;Parent=Msa1163920-mRNA-1
chr7_4	CDS	55382436	55382737	55382436	ID=Msa1163920-mRNA-1:cds;Parent=Msa1163920-mRNA-1
chr7_4	CDS	55383078	55383414	55383078	ID=Msa1163920-mRNA-1:cds;Parent=Msa1163920-mRNA-1
chr7_4	three_prime_UTR	55383415	55383823	55383415	ID=Msa1163920-mRNA-1:three_prime_utr;Parent=Msa1163920-mRNA-1

Gene Sequence

>Msa1163920

ATGGATTCAATTCAAGAATTTATAGGGACATGTAACAATGAAAACATGACCTGTAACTTCATGAATAACAACAACAACAACAGTATAAGTACAACCACAACAAGCTTAACAACAACAACAACAGCTAGTGGAAGCTCTTCCTCATCTGCAGCTTCAACCATCATCAACAGTCCCAACAGTAGCAGCCGCTATGAGAATCAGAAACGCCGTGACTGGAACACCTTTGGTCAGTATCTCAAGAATCATCGTCCACCTCTTTCCCTCTCTAGGTGCAGCGGTGCACATGTCCTTGAATTCCTAAGGTATTTGGATCAATTTGGGAAGACAAAAGTTCACACACCAATTTGTCCATTTTATGGGCATCCAAATCCACCAGCACCATGTCCATGTCCTCTAAGGCAAGCATGGGGAAGCCTTGATGCACTCATAGGTCGTCTTCGTGCTGCTTTTGAAGAAAATGGAGGAAAACCAGAAACAAATCCTTTTGGTGCTCGAGCTGTGAGGCTCTACCTTCGCGAAGTTCGTGATCTTCAATCAAAAGCAAGAGGTATTAGTTACGAGAAGAAGAAAAGAAAGCGTCCACCACCACAACAACAACAAGTTCCACCACCAGCACAAGGTGCAAGTGCAACTCATTAG

Protein sequence

>Msa1163920

MDSIQEFIGTCNNENMTCNFMNNNNNNSISTTTTSLTTTTTASGSSSSSAASTIINSPNSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPPQQQQVPPPAQGASATH*