AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168590 MtrunA17_Chr1g0185121 96.868 447 13 1 1 447 1 446 0.0 899
Msa0168590 MtrunA17_Chr2g0330171 53.403 382 141 10 6 370 1 362 1.33e-115 347
Msa0168590 MtrunA17_Chr8g0342421 52.956 389 116 11 6 352 18 381 1.89e-115 348
Msa0168590 MtrunA17_Chr1g0181381 84.066 182 25 1 36 217 34 211 4.32e-114 344
Msa0168590 MtrunA17_Chr1g0151351 55.987 309 100 6 35 343 37 309 1.18e-112 338
Msa0168590 MtrunA17_Chr1g0191991 56.973 337 106 8 40 356 63 380 3.34e-112 340
Msa0168590 MtrunA17_Chr7g0263941 56.426 319 103 6 17 327 11 301 5.42e-109 328
Msa0168590 MtrunA17_Chr4g0040571 82.584 178 30 1 29 206 28 204 9.29e-109 330
Msa0168590 MtrunA17_Chr8g0373541 75.862 203 42 3 6 208 4 199 9.48e-109 331
Msa0168590 MtrunA17_Chr4g0029521 55.556 315 113 8 36 327 34 344 2.89e-108 329
Msa0168590 MtrunA17_Chr1g0162971 48.711 388 138 10 40 386 41 408 1.10e-105 320
Msa0168590 MtrunA17_Chr1g0199101 63.878 263 70 7 40 296 47 290 2.71e-105 323
Msa0168590 MtrunA17_Chr2g0326381 75.000 184 46 0 39 222 31 214 3.20e-105 318
Msa0168590 MtrunA17_Chr1g0163001 68.584 226 57 4 4 224 2 218 1.18e-102 315
Msa0168590 MtrunA17_Chr3g0141431 46.667 405 174 11 33 408 15 406 4.81e-102 310
Msa0168590 MtrunA17_Chr1g0210821 69.268 205 54 2 43 239 47 250 6.64e-101 312
Msa0168590 MtrunA17_Chr7g0268961 56.169 308 85 7 50 329 32 317 5.00e-99 305
Msa0168590 MtrunA17_Chr2g0324991 84.848 132 19 1 51 182 3 133 3.23e-82 250
Msa0168590 MtrunA17_Chr8g0375521 50.000 244 109 5 40 276 27 264 1.27e-74 239
Msa0168590 MtrunA17_Chr6g0479921 63.694 157 55 2 40 195 29 184 3.20e-71 232
Msa0168590 MtrunA17_Chr2g0320341 36.774 155 85 3 49 190 224 378 1.41e-25 107
Msa0168590 MtrunA17_Chr1g0200421 36.184 152 84 4 54 193 236 386 1.25e-23 103
Msa0168590 MtrunA17_Chr3g0123941 36.538 156 92 3 45 193 113 268 4.26e-23 99.8
Msa0168590 MtrunA17_Chr5g0422571 34.161 161 94 5 61 211 106 264 1.84e-21 94.4
Msa0168590 MtrunA17_Chr7g0258011 35.032 157 83 6 61 200 181 335 1.92e-20 92.0
Msa0168590 MtrunA17_Chr1g0198651 35.172 145 80 5 61 193 107 249 3.25e-20 90.5
Msa0168590 MtrunA17_Chr8g0382121 35.135 148 86 4 53 190 109 256 3.29e-20 90.9
Msa0168590 MtrunA17_Chr4g0053341 30.846 201 124 7 2 193 24 218 3.91e-20 89.0
Msa0168590 MtrunA17_Chr8g0352011 36.620 142 79 5 61 193 171 310 8.19e-20 90.1
Msa0168590 MtrunA17_Chr1g0173841 35.915 142 80 5 61 193 220 359 4.02e-19 89.0
Msa0168590 MtrunA17_Chr4g0026521 34.694 147 85 5 56 193 118 262 6.40e-19 87.0
Msa0168590 MtrunA17_Chr2g0328921 33.523 176 97 7 27 193 118 282 1.42e-18 86.3
Msa0168590 MtrunA17_Chr2g0321291 35.374 147 84 5 56 193 133 277 2.27e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168590 AT4G02670.2 50.500 400 125 9 23 411 38 375 1.74e-120 357
Msa0168590 AT4G02670.1 50.500 400 125 9 23 411 36 373 1.90e-120 357
Msa0168590 AT3G50700.1 53.425 365 119 9 2 333 1 347 1.63e-113 341
Msa0168590 AT1G55110.3 72.603 219 52 3 6 216 21 239 4.75e-111 335
Msa0168590 AT1G55110.1 72.603 219 52 3 6 216 21 239 4.75e-111 335
Msa0168590 AT1G55110.2 72.603 219 52 3 6 216 21 239 4.75e-111 335
Msa0168590 AT5G03150.1 81.768 181 30 1 40 217 53 233 2.37e-107 327
Msa0168590 AT5G66730.1 69.643 224 55 4 2 221 1 215 1.98e-106 325
Msa0168590 AT1G03840.1 82.184 174 30 1 33 206 34 206 9.69e-106 323
Msa0168590 AT3G45260.2 83.133 166 28 0 39 204 38 203 1.49e-105 320
Msa0168590 AT3G45260.1 83.133 166 28 0 39 204 38 203 1.49e-105 320
Msa0168590 AT3G13810.6 85.030 167 25 0 37 203 48 214 2.65e-105 322
Msa0168590 AT3G13810.5 85.030 167 25 0 37 203 62 228 2.99e-105 322
Msa0168590 AT3G13810.4 85.030 167 25 0 37 203 67 233 3.00e-105 322
Msa0168590 AT3G13810.1 85.030 167 25 0 37 203 67 233 3.00e-105 322
Msa0168590 AT5G44160.1 54.277 339 115 11 19 326 20 349 5.37e-104 317
Msa0168590 AT5G60470.2 73.438 192 42 2 40 222 44 235 3.73e-103 315
Msa0168590 AT5G60470.3 73.438 192 42 2 40 222 40 231 4.62e-103 315
Msa0168590 AT1G14580.1 78.286 175 32 2 34 203 42 215 3.97e-102 312
Msa0168590 AT1G14580.2 78.286 175 32 2 34 203 42 215 3.97e-102 312
Msa0168590 AT1G03840.2 81.034 174 30 2 33 206 34 204 6.99e-102 313
Msa0168590 AT1G14580.3 78.286 175 32 2 34 203 56 229 8.38e-102 312
Msa0168590 AT2G02080.1 77.011 174 35 2 34 203 44 216 3.55e-101 311
Msa0168590 AT2G02080.4 77.011 174 35 2 34 203 44 216 3.55e-101 311
Msa0168590 AT2G02080.5 77.011 174 35 2 34 203 44 216 3.55e-101 311
Msa0168590 AT2G02080.3 77.011 174 35 2 34 203 44 216 3.55e-101 311
Msa0168590 AT2G02070.2 83.537 164 26 1 40 203 52 214 1.66e-100 313
Msa0168590 AT2G02070.1 83.537 164 26 1 40 203 52 214 1.66e-100 313
Msa0168590 AT3G13810.3 86.928 153 20 0 51 203 68 220 5.37e-98 303
Msa0168590 AT3G13810.2 86.928 153 20 0 51 203 82 234 7.64e-98 303
Msa0168590 AT5G60470.1 72.376 181 41 2 51 222 46 226 1.90e-95 295
Msa0168590 AT5G44160.2 54.221 308 105 10 50 326 8 310 6.98e-95 293
Msa0168590 AT2G02080.6 80.000 140 27 1 64 203 1 139 1.06e-85 269
Msa0168590 AT2G02080.2 80.000 140 27 1 64 203 1 139 1.06e-85 269
Msa0168590 AT2G01940.1 62.573 171 59 2 27 196 35 201 4.33e-75 242
Msa0168590 AT1G68130.1 63.462 156 56 1 40 194 41 196 2.32e-72 234
Msa0168590 AT1G25250.3 63.694 157 55 2 40 194 33 189 4.10e-72 232
Msa0168590 AT2G01940.3 61.628 172 60 3 27 196 35 202 1.59e-71 233
Msa0168590 AT1G25250.1 64.626 147 50 2 50 194 20 166 1.17e-68 223
Msa0168590 AT2G01940.2 62.500 112 41 1 86 196 1 112 8.61e-46 162
Msa0168590 AT1G68130.2 60.909 110 42 1 86 194 1 110 9.86e-45 159
Msa0168590 AT1G25250.2 60.360 111 42 2 86 194 1 111 9.20e-44 155
Msa0168590 AT5G22890.1 34.911 169 95 4 38 193 188 354 1.09e-23 102
Msa0168590 AT1G34370.3 35.443 158 89 4 49 193 14 171 1.58e-23 100
Msa0168590 AT1G34370.2 35.443 158 89 4 49 193 224 381 4.26e-23 102
Msa0168590 AT1G34370.1 35.443 158 89 4 49 193 224 381 4.26e-23 102
Msa0168590 AT1G13290.1 33.987 153 88 6 61 202 93 243 1.31e-19 89.4
Msa0168590 AT1G08290.1 35.260 173 91 8 40 193 142 312 5.70e-19 88.2
Msa0168590 AT1G34790.1 36.000 150 85 5 53 193 129 276 8.26e-19 87.0
Msa0168590 AT3G20880.1 35.211 142 81 5 61 193 248 387 1.38e-18 87.8
Msa0168590 AT3G57670.1 34.694 147 85 5 56 193 204 348 1.51e-18 87.4
Msa0168590 AT1G51220.1 33.333 147 87 5 56 193 165 309 3.77e-18 85.9

Find 134 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAGGTTGGTGTGAAAATT+TGG 0.168178 1_4:+51381594 None:intergenic
AAATATACCCATGGTAATTT+TGG 0.173299 1_4:+51381045 None:intergenic
AAAATTACCATGGGTATATT+TGG 0.189707 1_4:-51381043 Msa0168590:three_prime_UTR
GATGATGTCATTATGCTCTT+AGG 0.239488 1_4:+51381534 None:intergenic
TGATGTGGCTTTGTTGGTTT+TGG 0.242334 1_4:+51381694 None:intergenic
AGGCTGCTGTGAGGAATTTA+TGG 0.249876 1_4:+51384711 None:intergenic
GTGTGAAAATTTGGAGATTC+AGG 0.253132 1_4:+51381603 None:intergenic
CAGCTCAACATTGGCCAGTT+TGG 0.266748 1_4:-51381360 Msa0168590:CDS
TGGAAACTTTGTTGTTGATT+TGG 0.272173 1_4:+51381714 None:intergenic
AGGAAGAGAGATTGGACTAA+TGG 0.292623 1_4:+51381741 None:intergenic
GTGTATCCAAGTCTCATTCT+TGG 0.308012 1_4:-51384986 Msa0168590:five_prime_UTR
GTTTGATGATGATGACTTAT+TGG 0.312377 1_4:+51381387 None:intergenic
GGAAACTTTGTTGTTGATTT+GGG 0.314994 1_4:+51381715 None:intergenic
TTGTGGTGGTGATGGCTAAT+TGG 0.316995 1_4:+51381772 None:intergenic
GAGACCGTCGTCGTTCTTTC+CGG 0.318538 1_4:+51381278 None:intergenic
TTCTGAGAAAGAAGTGGAAT+TGG 0.320642 1_4:+51384777 None:intergenic
CCCAGGTGATGTGGCTTTGT+TGG 0.325238 1_4:+51381688 None:intergenic
CAGTCCCAACAAGCAGGTTT+TGG 0.330445 1_4:-51381117 Msa0168590:CDS
TTGGGAAGAGGAAGAGAGAT+TGG 0.331874 1_4:+51381733 None:intergenic
TTTGATGAGGTTGGTGTTGA+TGG 0.335033 1_4:+51381160 None:intergenic
GACTAATGGGTTTGTGTTTG+TGG 0.349306 1_4:+51381755 None:intergenic
AAAACCAAAACCTGCTTGTT+GGG 0.357546 1_4:+51381113 None:intergenic
TGTGGTGGAGAGTATTATTA+AGG 0.363128 1_4:+51381634 None:intergenic
AGGGCTCTTGGAGATCTTAC+AGG 0.369272 1_4:-51384154 Msa0168590:CDS
GGTCTCACGAGGGACTTTCT+TGG 0.373376 1_4:-51381261 Msa0168590:CDS
CTAGGGTTAGGGTTTGGTTG+AGG 0.381467 1_4:+51381660 None:intergenic
GGAAGAGAGATTGGACTAAT+GGG 0.383729 1_4:+51381742 None:intergenic
ATGATGTCATTATGCTCTTA+GGG 0.385655 1_4:+51381535 None:intergenic
TTATTAAGGTTGCTAGGGTT+AGG 0.389295 1_4:+51381648 None:intergenic
CTTACCAACGGCGGAGGAAA+TGG 0.400342 1_4:-51381237 Msa0168590:CDS
TCTATGCTGTTCATTCTGAT+TGG 0.408547 1_4:-51384066 Msa0168590:CDS
TATTAGTTACCTGGGTTACC+AGG 0.411020 1_4:+51384661 None:intergenic
ACCAACAAAGCCACATCACC+TGG 0.418644 1_4:-51381689 Msa0168590:CDS
GGGTTAGGGTTTGGTTGAGG+TGG 0.424046 1_4:+51381663 None:intergenic
TATTAAGGTTGCTAGGGTTA+GGG 0.426783 1_4:+51381649 None:intergenic
CATAACCCTTCAAGGGCTCT+TGG 0.427551 1_4:-51384166 Msa0168590:CDS
AGGAGGCTGAGAAGAGAGGT+TGG 0.428318 1_4:+51381581 None:intergenic
CATTTCCTCCGCCGTTGGTA+AGG 0.428942 1_4:+51381238 None:intergenic
GGTTAGGGTTTGGTTGAGGT+GGG 0.430124 1_4:+51381664 None:intergenic
AAAGCTATCACTTCAGCATC+AGG 0.433390 1_4:+51384376 None:intergenic
AGAGTATTATTAAGGTTGCT+AGG 0.450934 1_4:+51381642 None:intergenic
TTTGTTGTTGATTTGGGAAG+AGG 0.451023 1_4:+51381721 None:intergenic
TTCCTTTGCTTCAACTTCCA+TGG 0.454202 1_4:+51384247 None:intergenic
GTTTGGTTGAGGTGGGTCCC+AGG 0.454878 1_4:+51381671 None:intergenic
GAAAACCAAAACCTGCTTGT+TGG 0.456770 1_4:+51381112 None:intergenic
GTTTGTGTTTGTGGTGGTGA+TGG 0.463157 1_4:+51381764 None:intergenic
AGGTTGCTAGGGTTAGGGTT+TGG 0.463790 1_4:+51381654 None:intergenic
TCTTATATACCTTGTTGTCA+TGG 0.465058 1_4:-51381008 Msa0168590:three_prime_UTR
GTGTTCATCATAACCCTTCA+AGG 0.465914 1_4:-51384174 Msa0168590:CDS
TTTGCTTCAACTTCCATGGT+AGG 0.474534 1_4:+51384251 None:intergenic
GTGTGGTGACATGGCAGCAC+TGG 0.477358 1_4:+51381479 None:intergenic
GCTGAGTCACTGATCCAAAC+TGG 0.481577 1_4:+51381346 None:intergenic
GTCGGTGCCGCCGCCATCAC+AGG 0.486782 1_4:-51381420 Msa0168590:CDS
GAGATTCAGGCTTGATGTTG+TGG 0.492741 1_4:+51381616 None:intergenic
GGGTTTGTGTGATGAAGAAA+TGG 0.496225 1_4:+51381555 None:intergenic
AAGGATATGCTAACATTCAC+GGG 0.504112 1_4:-51381195 Msa0168590:CDS
AGGAAATGGTGGTGAGTCCT+TGG 0.504475 1_4:-51381223 Msa0168590:CDS
TTTATATTCTCTAGTACCAC+AGG 0.507908 1_4:+51384027 None:intergenic
GGTATATAAGATGAATTGAA+TGG 0.512653 1_4:+51381020 None:intergenic
GAGTATTATTAAGGTTGCTA+GGG 0.512977 1_4:+51381643 None:intergenic
TGTTTCTTCTGAGAAAGAAG+TGG 0.516927 1_4:+51384771 None:intergenic
GTGGAATTGGACATTAGTGC+AGG 0.522525 1_4:+51384790 None:intergenic
GATGATGACTTATTGGTGGT+TGG 0.524796 1_4:+51381394 None:intergenic
TGATGATGATGACTTATTGG+TGG 0.525880 1_4:+51381390 None:intergenic
TGGTGGTTGGCTGCCTGTGA+TGG 0.526594 1_4:+51381407 None:intergenic
AACATGAGAGGCTGCCTCAC+CGG 0.528047 1_4:-51381297 Msa0168590:CDS
AAAGGATATGCTAACATTCA+CGG 0.528137 1_4:-51381196 Msa0168590:CDS
GTGTGTGAGATCTGCAACAA+GGG 0.528425 1_4:-51384319 Msa0168590:CDS
TGATGAACACATGAAGGCTC+TGG 0.528458 1_4:+51384187 None:intergenic
GAGGTGGGTCCCAGGTGATG+TGG 0.529471 1_4:+51381679 None:intergenic
GTAGAGGAGGCTGAGAAGAG+AGG 0.530169 1_4:+51381577 None:intergenic
CTTGGCCTTACCAACGGCGG+AGG 0.533245 1_4:-51381243 Msa0168590:CDS
AACAACTGTTCCTGAGTCGT+GGG 0.538679 1_4:-51381082 Msa0168590:CDS
AATTTATGGTTGAAACTAAG+TGG 0.539157 1_4:+51384725 None:intergenic
ACCACCATTTCCTCCGCCGT+TGG 0.540479 1_4:+51381233 None:intergenic
GTCCTCTCCTATGTAGCTGT+AGG 0.540553 1_4:+51384278 None:intergenic
TGAGAGCCAAGAATGAGACT+TGG 0.541869 1_4:+51384980 None:intergenic
TGTGATGGCGGCGGCACCGA+CGG 0.547521 1_4:+51381422 None:intergenic
GACTTTCTTGGCCTTACCAA+CGG 0.550956 1_4:-51381249 Msa0168590:CDS
CAACAACTGTTCCTGAGTCG+TGG 0.554359 1_4:-51381083 Msa0168590:CDS
ATCAAAACCTACAGCTACAT+AGG 0.556033 1_4:-51384285 Msa0168590:CDS
AGATCTCCAAGAGCCCTTGA+AGG 0.557730 1_4:+51384160 None:intergenic
CAAACCTCTCAGCTCAACAT+TGG 0.559254 1_4:-51381369 Msa0168590:CDS
TGCTGAGAGGTGTGGTGACA+TGG 0.562477 1_4:+51381470 None:intergenic
AACAGCAGTACAAGTTGGAG+AGG 0.563353 1_4:+51384840 None:intergenic
TAATGGGTTTGTGTTTGTGG+TGG 0.568535 1_4:+51381758 None:intergenic
TAGCATATCCTTTACATCCA+AGG 0.571843 1_4:+51381206 None:intergenic
TTGGCTGCCTGTGATGGCGG+CGG 0.574963 1_4:+51381413 None:intergenic
AGAAGCCTCCCTGGTAACCC+AGG 0.574987 1_4:-51384670 Msa0168590:intron
GTGTGATGAAGAAATGGTAG+AGG 0.576408 1_4:+51381561 None:intergenic
AAGTCACAGTCCCAACAAGC+AGG 0.578271 1_4:-51381123 Msa0168590:CDS
AAGGTTGTTGTGTGCTGACG+TGG 0.578429 1_4:+51381505 None:intergenic
AGAGAATATAAATGTGATTG+TGG 0.579986 1_4:-51384016 Msa0168590:CDS
TACCATGGAAGTTGAAGCAA+AGG 0.582854 1_4:-51384249 Msa0168590:CDS
TGGTTGGCTGCCTGTGATGG+CGG 0.588921 1_4:+51381410 None:intergenic
TGGTGAGTCCTTGGATGTAA+AGG 0.590221 1_4:-51381214 Msa0168590:CDS
GTTGTTAATGTAGTGATCAA+CGG 0.595265 1_4:+51381317 None:intergenic
GGGTTATGATGAACACATGA+AGG 0.597360 1_4:+51384181 None:intergenic
GATCTCCAAGAGCCCTTGAA+GGG 0.598968 1_4:+51384161 None:intergenic
GTTAGACACCAAAATTACCA+TGG 0.603342 1_4:-51381053 Msa0168590:exon
TGTTGTGTGCTGACGTGGAA+GGG 0.607996 1_4:+51381510 None:intergenic
TTGTTGTGTGCTGACGTGGA+AGG 0.613233 1_4:+51381509 None:intergenic
CTGGCCAATGTTGAGCTGAG+AGG 0.614671 1_4:+51381365 None:intergenic
GACATGGCAGCACTGGAAGA+AGG 0.615895 1_4:+51381486 None:intergenic
ATTAGTTACCTGGGTTACCA+GGG 0.616252 1_4:+51384662 None:intergenic
AACAGTACTCCATGACAACA+AGG 0.617159 1_4:+51380999 None:intergenic
GGAGAGGACATAACCTACCA+TGG 0.621627 1_4:-51384264 Msa0168590:CDS
CAGTACAAGTTGGAGAGGAG+AGG 0.622924 1_4:+51384845 None:intergenic
AGAACGACGACGGTCTCACG+AGG 0.626644 1_4:-51381272 Msa0168590:CDS
TGTTCATCATAACCCTTCAA+GGG 0.626799 1_4:-51384173 Msa0168590:CDS
TGAATGGCCAAATATACCCA+TGG 0.629992 1_4:+51381036 None:intergenic
ATTCAGGCTTGATGTTGTGG+TGG 0.630169 1_4:+51381619 None:intergenic
CACTACATTAACAACATGAG+AGG 0.631695 1_4:-51381309 Msa0168590:CDS
ACCAACGGCGGAGGAAATGG+TGG 0.634537 1_4:-51381234 Msa0168590:CDS
AAACATTATAGTAGAAAACA+TGG 0.647572 1_4:-51384124 Msa0168590:CDS
CGTCGTCGTTCTTTCCGGTG+AGG 0.652249 1_4:+51381283 None:intergenic
AGTTACCTGGGTTACCAGGG+AGG 0.652361 1_4:+51384665 None:intergenic
TTAGACACCAAAATTACCAT+GGG 0.652902 1_4:-51381052 Msa0168590:exon
ACAACTGTTCCTGAGTCGTG+GGG 0.654552 1_4:-51381081 Msa0168590:CDS
CCAACAAAGCCACATCACCT+GGG 0.660119 1_4:-51381688 Msa0168590:CDS
TGATGAAGAAATGGTAGAGG+AGG 0.664055 1_4:+51381564 None:intergenic
TGGAATTGGACATTAGTGCA+GGG 0.664460 1_4:+51384791 None:intergenic
AACCTACAGCTACATAGGAG+AGG 0.665795 1_4:-51384280 Msa0168590:CDS
TGTGTGTGAGATCTGCAACA+AGG 0.672147 1_4:-51384320 Msa0168590:CDS
CAACTGTTCCTGAGTCGTGG+GGG 0.675581 1_4:-51381080 Msa0168590:CDS
AGTGCAGTTGCTGAGAGGTG+TGG 0.691151 1_4:+51381462 None:intergenic
GGAGAAGTGCAGTTGCTGAG+AGG 0.691157 1_4:+51381457 None:intergenic
AGGATATGCTAACATTCACG+GGG 0.699503 1_4:-51381194 Msa0168590:CDS
TTTCTTGGCCTTACCAACGG+CGG 0.703626 1_4:-51381246 Msa0168590:CDS
AAAGCTCACTCTAAAACCTG+TGG 0.713942 1_4:-51384043 Msa0168590:CDS
GAACGACGACGGTCTCACGA+GGG 0.715036 1_4:-51381271 Msa0168590:CDS
CTCACCGGAAAGAACGACGA+CGG 0.728864 1_4:-51381282 Msa0168590:CDS
GGATATGCTAACATTCACGG+GGG 0.755990 1_4:-51381193 Msa0168590:CDS
GATATGCTAACATTCACGGG+GGG 0.778489 1_4:-51381192 Msa0168590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAATATTATGTTGA+AGG + chr1_4:51383226-51383245 None:intergenic 10.0%
!! TTAAAAATTCATAAATGAAT+TGG - chr1_4:51383571-51383590 Msa0168590:intron 10.0%
!! TAAAAATTCATAAATGAATT+GGG - chr1_4:51383572-51383591 Msa0168590:intron 10.0%
!!! TTTTTGTTTGATTCAAAATA+TGG + chr1_4:51381033-51381052 None:intergenic 15.0%
!! TGGATTAATTTAATAAAACA+TGG + chr1_4:51382049-51382068 None:intergenic 15.0%
!! AATAGAAACATAAGAAAAAA+TGG + chr1_4:51382069-51382088 None:intergenic 15.0%
!! AAAAGAATAATTATGAAAAC+AGG + chr1_4:51382402-51382421 None:intergenic 15.0%
!!! TCATTTATGAATTTTTAACA+TGG + chr1_4:51383569-51383588 None:intergenic 15.0%
!! TATTCTAAATGTAATTACTA+GGG + chr1_4:51383754-51383773 None:intergenic 15.0%
!! TTATTCTAAATGTAATTACT+AGG + chr1_4:51383755-51383774 None:intergenic 15.0%
!!! AACAATAAATAAACCTTTTT+AGG - chr1_4:51383781-51383800 Msa0168590:intron 15.0%
!!! ACAATAAATAAACCTTTTTA+GGG - chr1_4:51383782-51383801 Msa0168590:intron 15.0%
!! TAACTAATTATTAGTTACCT+GGG + chr1_4:51381301-51381320 None:intergenic 20.0%
!! TTAACTAATTATTAGTTACC+TGG + chr1_4:51381302-51381321 None:intergenic 20.0%
!! CTTCAAAATCCTTTATATTA+TGG - chr1_4:51381392-51381411 Msa0168590:CDS 20.0%
!!! TTACATGTGATTTTAAATTG+CGG + chr1_4:51381441-51381460 None:intergenic 20.0%
!! TACTAAACAATTGAACTATA+AGG + chr1_4:51381506-51381525 None:intergenic 20.0%
!! AAACATTATAGTAGAAAACA+TGG - chr1_4:51381827-51381846 Msa0168590:CDS 20.0%
!!! CAAACCATAATTTTAAATTG+CGG - chr1_4:51382112-51382131 Msa0168590:intron 20.0%
!!! TCTCTAAAACATTTATATTG+CGG + chr1_4:51382156-51382175 None:intergenic 20.0%
!! ATTTAATCTCTACCAAATTA+TGG + chr1_4:51382306-51382325 None:intergenic 20.0%
!!! TAGTCTTATAATTATGATGA+TGG + chr1_4:51383190-51383209 None:intergenic 20.0%
!! ATATTATGTTGAAGGATTAT+TGG + chr1_4:51383218-51383237 None:intergenic 20.0%
!!! AATGAATTTGATTTTGAGAA+TGG + chr1_4:51383498-51383517 None:intergenic 20.0%
!! TAACTAAATAAATAACACCA+TGG - chr1_4:51383989-51384008 Msa0168590:intron 20.0%
! AATTTATGGTTGAAACTAAG+TGG + chr1_4:51381229-51381248 None:intergenic 25.0%
! AATATGTTAAATTATGGTCG+CGG - chr1_4:51381338-51381357 Msa0168590:CDS 25.0%
!! TTTGTTGCTAATAGTGTTTT+TGG + chr1_4:51381605-51381624 None:intergenic 25.0%
! AGAGAATATAAATGTGATTG+TGG - chr1_4:51381935-51381954 Msa0168590:intron 25.0%
! AATTATGGTAAATACTCAGT+AGG + chr1_4:51382291-51382310 None:intergenic 25.0%
! ACTGAGTATTTACCATAATT+TGG - chr1_4:51382291-51382310 Msa0168590:intron 25.0%
! CTTTCATGAAACAAATTCAA+GGG + chr1_4:51382469-51382488 None:intergenic 25.0%
!! TGTTTTCTGAATCCTAAAAA+AGG - chr1_4:51382560-51382579 Msa0168590:intron 25.0%
! CAGTAGTAGATAAAAACAAA+AGG + chr1_4:51382635-51382654 None:intergenic 25.0%
!! TTTCCAATTTTAAATGTGTC+AGG - chr1_4:51382784-51382803 Msa0168590:intron 25.0%
!! TTCCAATTTTAAATGTGTCA+GGG - chr1_4:51382785-51382804 Msa0168590:intron 25.0%
! TATACACTCTTATGTTGATA+TGG - chr1_4:51382849-51382868 Msa0168590:intron 25.0%
! AAGTTCAGAGAAAAATACTA+TGG + chr1_4:51383009-51383028 None:intergenic 25.0%
!!! TCTTATAATTATGATGATGG+TGG + chr1_4:51383187-51383206 None:intergenic 25.0%
! AACATAATTTATGTCCCAAT+TGG - chr1_4:51383320-51383339 Msa0168590:intron 25.0%
!! TAGTTGACTCAAATTATGAT+TGG - chr1_4:51383675-51383694 Msa0168590:intron 25.0%
! AATTATGATTGGATAAATGC+AGG - chr1_4:51383686-51383705 Msa0168590:intron 25.0%
! ATGCAGGATAATTTCAATTT+AGG - chr1_4:51383702-51383721 Msa0168590:intron 25.0%
! TGCAGGATAATTTCAATTTA+GGG - chr1_4:51383703-51383722 Msa0168590:intron 25.0%
!!! TACTAGTACATTTTAGAGAA+GGG - chr1_4:51383811-51383830 Msa0168590:intron 25.0%
!!! CTAGACTTTTTAGGTTAATT+TGG - chr1_4:51383841-51383860 Msa0168590:intron 25.0%
!! TTTAGGTTAATTTGGTTTAG+AGG - chr1_4:51383849-51383868 Msa0168590:intron 25.0%
! ATAAAAAAGAGCCTCTAATA+TGG + chr1_4:51383970-51383989 None:intergenic 25.0%
!! AAATATACCCATGGTAATTT+TGG + chr1_4:51384909-51384928 None:intergenic 25.0%
! AAAATTACCATGGGTATATT+TGG - chr1_4:51384908-51384927 Msa0168590:five_prime_UTR 25.0%
! GGTATATAAGATGAATTGAA+TGG + chr1_4:51384934-51384953 None:intergenic 25.0%
AAAGAGAAGAGAAAAAAGCT+AGG + chr1_4:51381083-51381102 None:intergenic 30.0%
!!! CTTTTTTTCTTGGTCTTTTG+AGG + chr1_4:51381263-51381282 None:intergenic 30.0%
GAAAACATGGTGAGAAAAAA+TGG - chr1_4:51381840-51381859 Msa0168590:CDS 30.0%
TTTATATTCTCTAGTACCAC+AGG + chr1_4:51381927-51381946 None:intergenic 30.0%
AGTACTATACCTGGAAAAAA+GGG + chr1_4:51381963-51381982 None:intergenic 30.0%
TAGTACTATACCTGGAAAAA+AGG + chr1_4:51381964-51381983 None:intergenic 30.0%
! CAGACCGCAATTTAAAATTA+TGG + chr1_4:51382119-51382138 None:intergenic 30.0%
!!! TGTTTTAGAGATTTGCGTAA+CGG - chr1_4:51382165-51382184 Msa0168590:intron 30.0%
AACAATAAGGCAAATGCAAT+CGG + chr1_4:51382200-51382219 None:intergenic 30.0%
TTGCAGCACAATAAACAATA+AGG + chr1_4:51382213-51382232 None:intergenic 30.0%
!!! ATAGTTTTAGGTTACGATTG+CGG + chr1_4:51382268-51382287 None:intergenic 30.0%
! ATACTCAGTAGGATAGTTTT+AGG + chr1_4:51382280-51382299 None:intergenic 30.0%
CCTTTCATGAAACAAATTCA+AGG + chr1_4:51382470-51382489 None:intergenic 30.0%
! CCTTGAATTTGTTTCATGAA+AGG - chr1_4:51382467-51382486 Msa0168590:intron 30.0%
ATTCTAGTCTCTTTAGCAAT+TGG + chr1_4:51382530-51382549 None:intergenic 30.0%
!!! ACATTCATTTGGCCTTTTTT+AGG + chr1_4:51382575-51382594 None:intergenic 30.0%
! AGATAAAAACAAAAGGTGTG+TGG + chr1_4:51382628-51382647 None:intergenic 30.0%
CTTCTATAACTTCATTACAG+TGG - chr1_4:51383087-51383106 Msa0168590:intron 30.0%
ATAACTTCATTACAGTGGAT+TGG - chr1_4:51383092-51383111 Msa0168590:intron 30.0%
GGGACATAAATTATGTTACA+GGG + chr1_4:51383317-51383336 None:intergenic 30.0%
TGGGACATAAATTATGTTAC+AGG + chr1_4:51383318-51383337 None:intergenic 30.0%
!! ATTGCTGTGTTTTGAACAAT+CGG - chr1_4:51383598-51383617 Msa0168590:intron 30.0%
!! CTACTAGTACATTTTAGAGA+AGG - chr1_4:51383810-51383829 Msa0168590:intron 30.0%
!! TCACTTGTGTTTTTATTGAG+GGG + chr1_4:51383912-51383931 None:intergenic 30.0%
!! GTCACTTGTGTTTTTATTGA+GGG + chr1_4:51383913-51383932 None:intergenic 30.0%
!! TGTCACTTGTGTTTTTATTG+AGG + chr1_4:51383914-51383933 None:intergenic 30.0%
TAAAAACACAAGTGACATGT+TGG - chr1_4:51383917-51383936 Msa0168590:intron 30.0%
! CTAATATGGTCTTGATTCAA+TGG + chr1_4:51383956-51383975 None:intergenic 30.0%
TTGAATCAAGACCATATTAG+AGG - chr1_4:51383956-51383975 Msa0168590:intron 30.0%
! TTTTATTGTGTGAAAACTGC+AGG - chr1_4:51384085-51384104 Msa0168590:CDS 30.0%
!! GGAAACTTTGTTGTTGATTT+GGG + chr1_4:51384239-51384258 None:intergenic 30.0%
!! TGGAAACTTTGTTGTTGATT+TGG + chr1_4:51384240-51384259 None:intergenic 30.0%
GAGTATTATTAAGGTTGCTA+GGG + chr1_4:51384311-51384330 None:intergenic 30.0%
! AGAGTATTATTAAGGTTGCT+AGG + chr1_4:51384312-51384331 None:intergenic 30.0%
ATGATGTCATTATGCTCTTA+GGG + chr1_4:51384419-51384438 None:intergenic 30.0%
!! GTTTGATGATGATGACTTAT+TGG + chr1_4:51384567-51384586 None:intergenic 30.0%
GTTGTTAATGTAGTGATCAA+CGG + chr1_4:51384637-51384656 None:intergenic 30.0%
AAAGGATATGCTAACATTCA+CGG - chr1_4:51384755-51384774 Msa0168590:CDS 30.0%
TTAGACACCAAAATTACCAT+GGG - chr1_4:51384899-51384918 Msa0168590:five_prime_UTR 30.0%
! TCTTATATACCTTGTTGTCA+TGG - chr1_4:51384943-51384962 Msa0168590:five_prime_UTR 30.0%
AGAAGAGAAAAAAGCTAGGT+AGG + chr1_4:51381079-51381098 None:intergenic 35.0%
AGAAAAACAGCAGTACAAGT+TGG + chr1_4:51381119-51381138 None:intergenic 35.0%
! TTCTGAGAAAGAAGTGGAAT+TGG + chr1_4:51381177-51381196 None:intergenic 35.0%
! TGTTTCTTCTGAGAAAGAAG+TGG + chr1_4:51381183-51381202 None:intergenic 35.0%
TAGTTGCGGCCATAATATAA+AGG + chr1_4:51381404-51381423 None:intergenic 35.0%
TCTGCAACTGTAATTAGTTG+CGG + chr1_4:51381418-51381437 None:intergenic 35.0%
ATCAAAACCTACAGCTACAT+AGG - chr1_4:51381666-51381685 Msa0168590:CDS 35.0%
TGTTCATCATAACCCTTCAA+GGG - chr1_4:51381778-51381797 Msa0168590:CDS 35.0%
TCTATGCTGTTCATTCTGAT+TGG - chr1_4:51381885-51381904 Msa0168590:intron 35.0%
AGCAGTAATAGTACTATACC+TGG + chr1_4:51381972-51381991 None:intergenic 35.0%
AAAAAGGCCAAATGAATGTG+CGG - chr1_4:51382576-51382595 Msa0168590:intron 35.0%
! CACCCTGACACATTTAAAAT+TGG + chr1_4:51382790-51382809 None:intergenic 35.0%
ACTCTTATGTTGATATGGAG+TGG - chr1_4:51382854-51382873 Msa0168590:intron 35.0%
CTCTTATGTTGATATGGAGT+GGG - chr1_4:51382855-51382874 Msa0168590:intron 35.0%
! TGCAGTCTCTAAGAAAATGA+TGG - chr1_4:51382878-51382897 Msa0168590:intron 35.0%
!! TTACAGTGGATTGGATTACA+TGG - chr1_4:51383101-51383120 Msa0168590:intron 35.0%
GTTTGCATGCATAAAGCAAA+AGG - chr1_4:51383253-51383272 Msa0168590:intron 35.0%
TATGCATGATGCAATTGATG+TGG + chr1_4:51383283-51383302 None:intergenic 35.0%
AAATCATGCATGGGATAAAG+GGG + chr1_4:51383389-51383408 None:intergenic 35.0%
GAAATCATGCATGGGATAAA+GGG + chr1_4:51383390-51383409 None:intergenic 35.0%
AGAACTTCACAAGTCTTCTT+TGG - chr1_4:51383443-51383462 Msa0168590:intron 35.0%
! TTTTGAACAATCGGTCACAT+TGG - chr1_4:51383607-51383626 Msa0168590:intron 35.0%
! GGTTGAAAGCTAGACTTTTT+AGG - chr1_4:51383832-51383851 Msa0168590:intron 35.0%
TTGCATCGTACTTATAACCA+TGG + chr1_4:51384009-51384028 None:intergenic 35.0%
!! TTTGTTGTTGATTTGGGAAG+AGG + chr1_4:51384233-51384252 None:intergenic 35.0%
TATTAAGGTTGCTAGGGTTA+GGG + chr1_4:51384305-51384324 None:intergenic 35.0%
TTATTAAGGTTGCTAGGGTT+AGG + chr1_4:51384306-51384325 None:intergenic 35.0%
!! TGTGGTGGAGAGTATTATTA+AGG + chr1_4:51384320-51384339 None:intergenic 35.0%
GTGTGAAAATTTGGAGATTC+AGG + chr1_4:51384351-51384370 None:intergenic 35.0%
GATGATGTCATTATGCTCTT+AGG + chr1_4:51384420-51384439 None:intergenic 35.0%
! TGATGATGATGACTTATTGG+TGG + chr1_4:51384564-51384583 None:intergenic 35.0%
CACTACATTAACAACATGAG+AGG - chr1_4:51384642-51384661 Msa0168590:intron 35.0%
TAGCATATCCTTTACATCCA+AGG + chr1_4:51384748-51384767 None:intergenic 35.0%
AAGGATATGCTAACATTCAC+GGG - chr1_4:51384756-51384775 Msa0168590:CDS 35.0%
!!! TCATCATGTTTTGATGAGGT+TGG + chr1_4:51384803-51384822 None:intergenic 35.0%
!!! AGCATCATCATGTTTTGATG+AGG + chr1_4:51384807-51384826 None:intergenic 35.0%
AAAACCAAAACCTGCTTGTT+GGG + chr1_4:51384841-51384860 None:intergenic 35.0%
!!! AAGCAGGTTTTGGTTTTCTT+GGG - chr1_4:51384844-51384863 Msa0168590:five_prime_UTR 35.0%
GTTAGACACCAAAATTACCA+TGG - chr1_4:51384898-51384917 Msa0168590:five_prime_UTR 35.0%
GTGTATCCAAGTCTCATTCT+TGG - chr1_4:51380965-51380984 Msa0168590:three_prime_UTR 40.0%
GCTCTCAAAAAGTAGCTATC+AGG - chr1_4:51380987-51381006 Msa0168590:three_prime_UTR 40.0%
TGGAATTGGACATTAGTGCA+GGG + chr1_4:51381163-51381182 None:intergenic 40.0%
!!! AGGGAGGCTTCTTTTTTTCT+TGG + chr1_4:51381273-51381292 None:intergenic 40.0%
AAGAAAAAAAGAAGCCTCCC+TGG - chr1_4:51381272-51381291 Msa0168590:CDS 40.0%
ATTAGTTACCTGGGTTACCA+GGG + chr1_4:51381292-51381311 None:intergenic 40.0%
TATTAGTTACCTGGGTTACC+AGG + chr1_4:51381293-51381312 None:intergenic 40.0%
TTAAATTATGGTCGCGGTTG+CGG - chr1_4:51381344-51381363 Msa0168590:CDS 40.0%
!!! GATTTTGAAGTCTCTGCAAC+AGG + chr1_4:51381382-51381401 None:intergenic 40.0%
AAAGCTATCACTTCAGCATC+AGG + chr1_4:51381578-51381597 None:intergenic 40.0%
TTTGCTTCAACTTCCATGGT+AGG + chr1_4:51381703-51381722 None:intergenic 40.0%
TACCATGGAAGTTGAAGCAA+AGG - chr1_4:51381702-51381721 Msa0168590:CDS 40.0%
TTCCTTTGCTTCAACTTCCA+TGG + chr1_4:51381707-51381726 None:intergenic 40.0%
GGGTTATGATGAACACATGA+AGG + chr1_4:51381773-51381792 None:intergenic 40.0%
GTGTTCATCATAACCCTTCA+AGG - chr1_4:51381777-51381796 Msa0168590:CDS 40.0%
!! AAAGCTCACTCTAAAACCTG+TGG - chr1_4:51381908-51381927 Msa0168590:intron 40.0%
!!! ATTGTGGTACCCTTTTTTCC+AGG - chr1_4:51381951-51381970 Msa0168590:intron 40.0%
TTTGCAGCACAACAACAACT+AGG - chr1_4:51382241-51382260 Msa0168590:intron 40.0%
TTAACTGCCGCACATTCATT+TGG + chr1_4:51382586-51382605 None:intergenic 40.0%
!! ATGATGATGGTGGAAGTCTT+GGG + chr1_4:51383177-51383196 None:intergenic 40.0%
!! TATGATGATGGTGGAAGTCT+TGG + chr1_4:51383178-51383197 None:intergenic 40.0%
! TCAATGGGTTTGGACCAATT+GGG + chr1_4:51383337-51383356 None:intergenic 40.0%
! GATTAACGTGTCAATGGGTT+TGG + chr1_4:51383347-51383366 None:intergenic 40.0%
! ACACGGATTAACGTGTCAAT+GGG + chr1_4:51383352-51383371 None:intergenic 40.0%
! TACACGGATTAACGTGTCAA+TGG + chr1_4:51383353-51383372 None:intergenic 40.0%
AATCATGCATGGGATAAAGG+GGG + chr1_4:51383388-51383407 None:intergenic 40.0%
GGAAATCATGCATGGGATAA+AGG + chr1_4:51383391-51383410 None:intergenic 40.0%
AGGTAAGGGAAATCATGCAT+GGG + chr1_4:51383398-51383417 None:intergenic 40.0%
AAGGTAAGGGAAATCATGCA+TGG + chr1_4:51383399-51383418 None:intergenic 40.0%
! TTCCCTTACCTTTTTGCCAA+TGG - chr1_4:51383407-51383426 Msa0168590:intron 40.0%
! TCCCTTACCTTTTTGCCAAT+GGG - chr1_4:51383408-51383427 Msa0168590:intron 40.0%
! CTAGGGATGAACGAGTTTTA+AGG + chr1_4:51383737-51383756 None:intergenic 40.0%
!! CTAGTAGAAGCACCCTAAAA+AGG + chr1_4:51383797-51383816 None:intergenic 40.0%
ATTGTGTGAAAACTGCAGGA+AGG - chr1_4:51384089-51384108 Msa0168590:CDS 40.0%
!! TAATGGGTTTGTGTTTGTGG+TGG + chr1_4:51384196-51384215 None:intergenic 40.0%
!! GACTAATGGGTTTGTGTTTG+TGG + chr1_4:51384199-51384218 None:intergenic 40.0%
GGAAGAGAGATTGGACTAAT+GGG + chr1_4:51384212-51384231 None:intergenic 40.0%
AGGAAGAGAGATTGGACTAA+TGG + chr1_4:51384213-51384232 None:intergenic 40.0%
!!! TGATGTGGCTTTGTTGGTTT+TGG + chr1_4:51384260-51384279 None:intergenic 40.0%
!! GAGAGGTTGGTGTGAAAATT+TGG + chr1_4:51384360-51384379 None:intergenic 40.0%
TGATGAAGAAATGGTAGAGG+AGG + chr1_4:51384390-51384409 None:intergenic 40.0%
GTGTGATGAAGAAATGGTAG+AGG + chr1_4:51384393-51384412 None:intergenic 40.0%
GGGTTTGTGTGATGAAGAAA+TGG + chr1_4:51384399-51384418 None:intergenic 40.0%
! GATGATGACTTATTGGTGGT+TGG + chr1_4:51384560-51384579 None:intergenic 40.0%
AGGATATGCTAACATTCACG+GGG - chr1_4:51384757-51384776 Msa0168590:CDS 40.0%
!! TTTGATGAGGTTGGTGTTGA+TGG + chr1_4:51384794-51384813 None:intergenic 40.0%
GAAAACCAAAACCTGCTTGT+TGG + chr1_4:51384842-51384861 None:intergenic 40.0%
!!! CAAGCAGGTTTTGGTTTTCT+TGG - chr1_4:51384843-51384862 Msa0168590:five_prime_UTR 40.0%
TGAATGGCCAAATATACCCA+TGG + chr1_4:51384918-51384937 None:intergenic 40.0%
AACAGTACTCCATGACAACA+AGG + chr1_4:51384955-51384974 None:intergenic 40.0%
TGAGAGCCAAGAATGAGACT+TGG + chr1_4:51380974-51380993 None:intergenic 45.0%
! AACAGCAGTACAAGTTGGAG+AGG + chr1_4:51381114-51381133 None:intergenic 45.0%
GTGGAATTGGACATTAGTGC+AGG + chr1_4:51381164-51381183 None:intergenic 45.0%
AGGCTGCTGTGAGGAATTTA+TGG + chr1_4:51381243-51381262 None:intergenic 45.0%
TTGAAGTCTCTGCAACAGGA+TGG + chr1_4:51381378-51381397 None:intergenic 45.0%
TGTGTGTGAGATCTGCAACA+AGG - chr1_4:51381631-51381650 Msa0168590:CDS 45.0%
GTGTGTGAGATCTGCAACAA+GGG - chr1_4:51381632-51381651 Msa0168590:CDS 45.0%
AACCTACAGCTACATAGGAG+AGG - chr1_4:51381671-51381690 Msa0168590:CDS 45.0%
TGATGAACACATGAAGGCTC+TGG + chr1_4:51381767-51381786 None:intergenic 45.0%
! GTCAATGGGTTTGGACCAAT+TGG + chr1_4:51383338-51383357 None:intergenic 45.0%
CCCCATTGGCAAAAAGGTAA+GGG + chr1_4:51383412-51383431 None:intergenic 45.0%
! CCCTTACCTTTTTGCCAATG+GGG - chr1_4:51383409-51383428 Msa0168590:intron 45.0%
AATGTGCCCCATTGGCAAAA+AGG + chr1_4:51383418-51383437 None:intergenic 45.0%
TCTTGTAGAATGTGCCCCAT+TGG + chr1_4:51383426-51383445 None:intergenic 45.0%
!! TTGTGGTGGTGATGGCTAAT+TGG + chr1_4:51384182-51384201 None:intergenic 45.0%
! GTTTGTGTTTGTGGTGGTGA+TGG + chr1_4:51384190-51384209 None:intergenic 45.0%
TTGGGAAGAGGAAGAGAGAT+TGG + chr1_4:51384221-51384240 None:intergenic 45.0%
ATTCAGGCTTGATGTTGTGG+TGG + chr1_4:51384335-51384354 None:intergenic 45.0%
GAGATTCAGGCTTGATGTTG+TGG + chr1_4:51384338-51384357 None:intergenic 45.0%
CAAACCTCTCAGCTCAACAT+TGG - chr1_4:51384582-51384601 Msa0168590:intron 45.0%
!! GACTTTCTTGGCCTTACCAA+CGG - chr1_4:51384702-51384721 Msa0168590:CDS 45.0%
TGGTGAGTCCTTGGATGTAA+AGG - chr1_4:51384737-51384756 Msa0168590:CDS 45.0%
GGATATGCTAACATTCACGG+GGG - chr1_4:51384758-51384777 Msa0168590:CDS 45.0%
GATATGCTAACATTCACGGG+GGG - chr1_4:51384759-51384778 Msa0168590:CDS 45.0%
AACAACTGTTCCTGAGTCGT+GGG - chr1_4:51384869-51384888 Msa0168590:five_prime_UTR 45.0%
!! ATTTATAATATGTTAAATTA+TGG - chr1_4:51381332-51381351 Msa0168590:CDS 5.0%
! CAGTACAAGTTGGAGAGGAG+AGG + chr1_4:51381109-51381128 None:intergenic 50.0%
GTCCTCTCCTATGTAGCTGT+AGG + chr1_4:51381676-51381695 None:intergenic 50.0%
GGAGAGGACATAACCTACCA+TGG - chr1_4:51381687-51381706 Msa0168590:CDS 50.0%
CATAACCCTTCAAGGGCTCT+TGG - chr1_4:51381785-51381804 Msa0168590:CDS 50.0%
GATCTCCAAGAGCCCTTGAA+GGG + chr1_4:51381793-51381812 None:intergenic 50.0%
AGATCTCCAAGAGCCCTTGA+AGG + chr1_4:51381794-51381813 None:intergenic 50.0%
AGGGCTCTTGGAGATCTTAC+AGG - chr1_4:51381797-51381816 Msa0168590:CDS 50.0%
ATGCATGGGATAAAGGGGGA+GGG + chr1_4:51383384-51383403 None:intergenic 50.0%
GCCCCATTGGCAAAAAGGTA+AGG + chr1_4:51383413-51383432 None:intergenic 50.0%
ACCAACAAAGCCACATCACC+TGG - chr1_4:51384262-51384281 Msa0168590:CDS 50.0%
CCAACAAAGCCACATCACCT+GGG - chr1_4:51384263-51384282 Msa0168590:CDS 50.0%
! GGTTAGGGTTTGGTTGAGGT+GGG + chr1_4:51384290-51384309 None:intergenic 50.0%
! CTAGGGTTAGGGTTTGGTTG+AGG + chr1_4:51384294-51384313 None:intergenic 50.0%
AGGTTGCTAGGGTTAGGGTT+TGG + chr1_4:51384300-51384319 None:intergenic 50.0%
! TGTTGTGTGCTGACGTGGAA+GGG + chr1_4:51384444-51384463 None:intergenic 50.0%
! TTGTTGTGTGCTGACGTGGA+AGG + chr1_4:51384445-51384464 None:intergenic 50.0%
! AAGGTTGTTGTGTGCTGACG+TGG + chr1_4:51384449-51384468 None:intergenic 50.0%
CTCCAAAAAGCAGCAACCGT+CGG - chr1_4:51384513-51384532 Msa0168590:intron 50.0%
CAGCTCAACATTGGCCAGTT+TGG - chr1_4:51384591-51384610 Msa0168590:intron 50.0%
GCTGAGTCACTGATCCAAAC+TGG + chr1_4:51384608-51384627 None:intergenic 50.0%
!! TTTCTTGGCCTTACCAACGG+CGG - chr1_4:51384705-51384724 Msa0168590:CDS 50.0%
! AGGAAATGGTGGTGAGTCCT+TGG - chr1_4:51384728-51384747 Msa0168590:CDS 50.0%
AAGTCACAGTCCCAACAAGC+AGG - chr1_4:51384828-51384847 Msa0168590:five_prime_UTR 50.0%
! CAGTCCCAACAAGCAGGTTT+TGG - chr1_4:51384834-51384853 Msa0168590:five_prime_UTR 50.0%
CAACAACTGTTCCTGAGTCG+TGG - chr1_4:51384868-51384887 Msa0168590:five_prime_UTR 50.0%
ACAACTGTTCCTGAGTCGTG+GGG - chr1_4:51384870-51384889 Msa0168590:five_prime_UTR 50.0%
!!! GGTCTTTTGAGGCTGCTGTG+AGG + chr1_4:51381252-51381271 None:intergenic 55.0%
AGTTACCTGGGTTACCAGGG+AGG + chr1_4:51381289-51381308 None:intergenic 55.0%
GGGGAGGGGACTAATGTACA+CGG + chr1_4:51383369-51383388 None:intergenic 55.0%
TGCATGGGATAAAGGGGGAG+GGG + chr1_4:51383383-51383402 None:intergenic 55.0%
CATGCATGGGATAAAGGGGG+AGG + chr1_4:51383385-51383404 None:intergenic 55.0%
!! CCCAGGTGATGTGGCTTTGT+TGG + chr1_4:51384266-51384285 None:intergenic 55.0%
! GGGTTAGGGTTTGGTTGAGG+TGG + chr1_4:51384291-51384310 None:intergenic 55.0%
AGGAGGCTGAGAAGAGAGGT+TGG + chr1_4:51384373-51384392 None:intergenic 55.0%
GTAGAGGAGGCTGAGAAGAG+AGG + chr1_4:51384377-51384396 None:intergenic 55.0%
! GACATGGCAGCACTGGAAGA+AGG + chr1_4:51384468-51384487 None:intergenic 55.0%
! TGCTGAGAGGTGTGGTGACA+TGG + chr1_4:51384484-51384503 None:intergenic 55.0%
AGTGCAGTTGCTGAGAGGTG+TGG + chr1_4:51384492-51384511 None:intergenic 55.0%
! GGAGAAGTGCAGTTGCTGAG+AGG + chr1_4:51384497-51384516 None:intergenic 55.0%
!!! CACCGACGGTTGCTGCTTTT+TGG + chr1_4:51384518-51384537 None:intergenic 55.0%
CTGGCCAATGTTGAGCTGAG+AGG + chr1_4:51384589-51384608 None:intergenic 55.0%
AACATGAGAGGCTGCCTCAC+CGG - chr1_4:51384654-51384673 Msa0168590:intron 55.0%
CTCACCGGAAAGAACGACGA+CGG - chr1_4:51384669-51384688 Msa0168590:intron 55.0%
GAGACCGTCGTCGTTCTTTC+CGG + chr1_4:51384676-51384695 None:intergenic 55.0%
GGTCTCACGAGGGACTTTCT+TGG - chr1_4:51384690-51384709 Msa0168590:CDS 55.0%
CATTTCCTCCGCCGTTGGTA+AGG + chr1_4:51384716-51384735 None:intergenic 55.0%
CTTACCAACGGCGGAGGAAA+TGG - chr1_4:51384714-51384733 Msa0168590:CDS 55.0%
CAACTGTTCCTGAGTCGTGG+GGG - chr1_4:51384871-51384890 Msa0168590:five_prime_UTR 55.0%
TAACAGTTCCCCCACGACTC+AGG + chr1_4:51384882-51384901 None:intergenic 55.0%
AGAAGCCTCCCTGGTAACCC+AGG - chr1_4:51381281-51381300 Msa0168590:CDS 60.0%
GTTTGGTTGAGGTGGGTCCC+AGG + chr1_4:51384283-51384302 None:intergenic 60.0%
GTGTGGTGACATGGCAGCAC+TGG + chr1_4:51384475-51384494 None:intergenic 60.0%
! TGGTTGGCTGCCTGTGATGG+CGG + chr1_4:51384544-51384563 None:intergenic 60.0%
! TGGTGGTTGGCTGCCTGTGA+TGG + chr1_4:51384547-51384566 None:intergenic 60.0%
CGTCGTCGTTCTTTCCGGTG+AGG + chr1_4:51384671-51384690 None:intergenic 60.0%
AGAACGACGACGGTCTCACG+AGG - chr1_4:51384679-51384698 Msa0168590:CDS 60.0%
GAACGACGACGGTCTCACGA+GGG - chr1_4:51384680-51384699 Msa0168590:CDS 60.0%
ACCAACGGCGGAGGAAATGG+TGG - chr1_4:51384717-51384736 Msa0168590:CDS 60.0%
ACCACCATTTCCTCCGCCGT+TGG + chr1_4:51384721-51384740 None:intergenic 60.0%
GAGGTGGGTCCCAGGTGATG+TGG + chr1_4:51384275-51384294 None:intergenic 65.0%
!! TTGGCTGCCTGTGATGGCGG+CGG + chr1_4:51384541-51384560 None:intergenic 65.0%
!! CTTGGCCTTACCAACGGCGG+AGG - chr1_4:51384708-51384727 Msa0168590:CDS 65.0%
!! TGTGATGGCGGCGGCACCGA+CGG + chr1_4:51384532-51384551 None:intergenic 70.0%
!! GTCGGTGCCGCCGCCATCAC+AGG - chr1_4:51384531-51384550 Msa0168590:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 51380948 51385025 51380948 ID=Msa0168590;Name=Msa0168590
chr1_4 mRNA 51380948 51385025 51380948 ID=Msa0168590-mRNA-1;Parent=Msa0168590;Name=Msa0168590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=207|1|1|1|1|1|3|123|447
chr1_4 exon 51380948 51381866 51380948 ID=Msa0168590-mRNA-1:exon:15087;Parent=Msa0168590-mRNA-1
chr1_4 exon 51384001 51384400 51384001 ID=Msa0168590-mRNA-1:exon:15086;Parent=Msa0168590-mRNA-1
chr1_4 exon 51384671 51385025 51384671 ID=Msa0168590-mRNA-1:exon:15085;Parent=Msa0168590-mRNA-1
chr1_4 five_prime_UTR 51384819 51385025 51384819 ID=Msa0168590-mRNA-1:five_prime_utr;Parent=Msa0168590-mRNA-1
chr1_4 CDS 51384671 51384818 51384671 ID=Msa0168590-mRNA-1:cds;Parent=Msa0168590-mRNA-1
chr1_4 CDS 51384001 51384400 51384001 ID=Msa0168590-mRNA-1:cds;Parent=Msa0168590-mRNA-1
chr1_4 CDS 51381071 51381866 51381071 ID=Msa0168590-mRNA-1:cds;Parent=Msa0168590-mRNA-1
chr1_4 three_prime_UTR 51380948 51381070 51380948 ID=Msa0168590-mRNA-1:three_prime_utr;Parent=Msa0168590-mRNA-1
Gene Sequence

>Msa0168590

ATGTTCCCTGCACTAATGTCCAATTCCACTTCTTTCTCAGAAGAAACAAGTGTCTCTTCTACTAGATTAAACCACTTAGTTTCAACCATAAATTCCTCACAGCAGCCTCAAAAGACCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAAACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTACAGCTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAATAAAGATGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATAGTAGAAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGTCTGCAAACCAATTAGCCATCACCACCACAAACACAAACCCATTAGTCCAATCTCTCTTCCTCTTCCCAAATCAACAACAAAGTTTCCAAAACCAACAAAGCCACATCACCTGGGACCCACCTCAACCAAACCCTAACCCTAGCAACCTTAATAATACTCTCCACCACAACATCAAGCCTGAATCTCCAAATTTTCACACCAACCTCTCTTCTCAGCCTCCTCTACCATTTCTTCATCACACAAACCCTAAGAGCATAATGACATCATCACCCTTCCACGTCAGCACACAACAACCTTCTTCCAGTGCTGCCATGTCACCACACCTCTCAGCAACTGCACTTCTCCAAAAAGCAGCAACCGTCGGTGCCGCCGCCATCACAGGCAGCCAACCACCAATAAGTCATCATCATCAAACCTCTCAGCTCAACATTGGCCAGTTTGGATCAGTGACTCAGCTCAACTCCGTTGATCACTACATTAACAACATGAGAGGCTGCCTCACCGGAAAGAACGACGACGGTCTCACGAGGGACTTTCTTGGCCTTACCAACGGCGGAGGAAATGGTGGTGAGTCCTTGGATGTAAAGGATATGCTAACATTCACGGGGGGTGTAGAATACCATCAACACCAACCTCATCAAAACATGATGATGCTAAAGTCACAGTCCCAACAAGCAGGTTTTGGTTTTCTTGGGACAACAACTGTTCCTGAGTCGTGGGGGAACTGTTAG
Protein sequence

>Msa0168590

MFPALMSNSTSFSEETSVSSTRLNHLVSTINSSQQPQKTKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKDVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITTTNTNPLVQSLFLFPNQQQSFQNQQSHITWDPPQPNPNPSNLNNTLHHNIKPESPNFHTNLSSQPPLPFLHHTNPKSIMTSSPFHVSTQQPSSSAAMSPHLSATALLQKAATVGAAAITGSQPPISHHHQTSQLNIGQFGSVTQLNSVDHYINNMRGCLTGKNDDGLTRDFLGLTNGGGNGGESLDVKDMLTFTGGVEYHQHQPHQNMMMLKSQSQQAGFGFLGTTTVPESWGNC*