Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169290 | AES81817.2 | 75.291 | 344 | 65 | 4 | 4 | 346 | 3 | 327 | 7.38e-174 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169290 | sp|G0S8G9|IF2P_CHATD | 36.207 | 232 | 108 | 5 | 14 | 212 | 520 | 744 | 5.06e-34 | 136 |
| Msa1169290 | sp|G0S8G9|IF2P_CHATD | 46.789 | 109 | 56 | 1 | 235 | 343 | 860 | 966 | 1.12e-20 | 97.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169290 | G7L1S6 | 75.291 | 344 | 65 | 4 | 4 | 346 | 3 | 327 | 3.52e-174 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1079100 | Msa1169290 | 0.836033 | 1.185703e-56 | -8.615850e-47 |
| Msa1124010 | Msa1169290 | 0.816335 | 5.831810e-52 | -8.615850e-47 |
| Msa0968290 | Msa1169290 | 0.960125 | 3.316694e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169290 | MtrunA17_Chr4g0004141 | 69.122 | 353 | 63 | 9 | 4 | 345 | 3 | 320 | 2.29e-161 | 459 |
| Msa1169290 | MtrunA17_Chr4g0000991 | 54.673 | 214 | 82 | 5 | 9 | 214 | 56 | 262 | 1.82e-67 | 217 |
| Msa1169290 | MtrunA17_Chr1g0202021 | 51.046 | 239 | 77 | 7 | 9 | 215 | 743 | 973 | 3.55e-65 | 223 |
| Msa1169290 | MtrunA17_Chr1g0202021 | 60.317 | 126 | 41 | 1 | 225 | 341 | 1067 | 1192 | 1.15e-38 | 146 |
| Msa1169290 | MtrunA17_Chr1g0201991 | 50.000 | 252 | 80 | 8 | 2 | 215 | 215 | 458 | 1.34e-64 | 219 |
| Msa1169290 | MtrunA17_Chr1g0201991 | 61.290 | 124 | 39 | 1 | 225 | 339 | 552 | 675 | 3.23e-39 | 148 |
| Msa1169290 | MtrunA17_Chr4g0000221 | 52.000 | 200 | 74 | 6 | 9 | 194 | 32 | 223 | 1.35e-51 | 177 |
| Msa1169290 | MtrunA17_Chr7g0263861 | 80.851 | 94 | 18 | 0 | 253 | 346 | 140 | 233 | 1.99e-46 | 159 |
| Msa1169290 | MtrunA17_Chr7g0263861 | 100.000 | 35 | 0 | 0 | 4 | 38 | 53 | 87 | 2.53e-17 | 80.9 |
| Msa1169290 | MtrunA17_Chr7g0264901 | 36.491 | 285 | 133 | 9 | 16 | 264 | 36 | 308 | 1.64e-42 | 152 |
| Msa1169290 | MtrunA17_Chr7g0264471 | 41.441 | 222 | 103 | 9 | 16 | 215 | 55 | 271 | 3.61e-38 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169290 | AT1G76810.1 | 46.725 | 229 | 82 | 7 | 16 | 212 | 704 | 924 | 2.29e-55 | 195 |
| Msa1169290 | AT1G76810.1 | 53.175 | 126 | 50 | 1 | 225 | 341 | 1021 | 1146 | 2.49e-32 | 128 |
| Msa1169290 | AT1G76720.1 | 43.882 | 237 | 93 | 7 | 8 | 212 | 619 | 847 | 5.02e-54 | 191 |
| Msa1169290 | AT1G76720.1 | 41.600 | 125 | 53 | 3 | 225 | 339 | 944 | 1058 | 8.56e-18 | 85.5 |
| Msa1169290 | AT1G76720.2 | 43.882 | 237 | 93 | 7 | 8 | 212 | 652 | 880 | 5.19e-54 | 191 |
| Msa1169290 | AT1G76720.2 | 41.600 | 125 | 53 | 3 | 225 | 339 | 977 | 1091 | 9.36e-18 | 85.5 |
| Msa1169290 | AT1G21160.1 | 41.949 | 236 | 99 | 6 | 8 | 212 | 488 | 716 | 7.89e-49 | 176 |
| Msa1169290 | AT1G21160.1 | 46.825 | 126 | 58 | 1 | 225 | 341 | 813 | 938 | 8.75e-29 | 118 |
| Msa1169290 | AT2G27700.2 | 41.453 | 234 | 100 | 7 | 16 | 219 | 35 | 261 | 5.99e-43 | 155 |
| Msa1169290 | AT2G27700.2 | 47.619 | 126 | 57 | 1 | 225 | 341 | 353 | 478 | 1.54e-28 | 115 |
| Msa1169290 | AT2G27700.1 | 41.631 | 233 | 99 | 7 | 16 | 218 | 35 | 260 | 8.98e-43 | 155 |
| Msa1169290 | AT2G27700.1 | 47.619 | 126 | 57 | 1 | 225 | 341 | 352 | 477 | 1.58e-28 | 115 |
Find 92 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTGATATTGCTATTT+TGG | 0.172010 | 7_4:-62222580 | Msa1169290:CDS |
| TTGGCAACTTGCACACAAAT+TGG | 0.226218 | 7_4:-62221860 | Msa1169290:CDS |
| TGTTGATAACGCACCAATTA+GGG | 0.236097 | 7_4:-62222610 | Msa1169290:CDS |
| CGATGCGATGTGATGCGATT+AGG | 0.250163 | 7_4:+62222927 | None:intergenic |
| TTGTTGATAACGCACCAATT+AGG | 0.258555 | 7_4:-62222611 | Msa1169290:CDS |
| TTTAATAGATTGAGTGAGTC+TGG | 0.258728 | 7_4:+62222519 | None:intergenic |
| GTGTTGTTGATGATGGAATA+TGG | 0.285240 | 7_4:+62222670 | None:intergenic |
| CATAGATATGAACCCCTAAT+TGG | 0.307692 | 7_4:+62222597 | None:intergenic |
| AGCATTGATGCAGCAGTCTA+AGG | 0.316795 | 7_4:-62222409 | Msa1169290:CDS |
| ATTCATAGTTGCCTTGAATA+AGG | 0.327102 | 7_4:-62222481 | Msa1169290:CDS |
| GATGCGATGTGATGCGATTA+GGG | 0.340940 | 7_4:+62222928 | None:intergenic |
| TGATGCAGGAAACAGGTTTC+CGG | 0.348880 | 7_4:+62222757 | None:intergenic |
| ACTGGCAAAACCATGCTTCT+AGG | 0.351988 | 7_4:-62222720 | Msa1169290:CDS |
| GTTGTTCATGTTGTTTAAAT+CGG | 0.353506 | 7_4:+62221794 | None:intergenic |
| AACAAAAGAAATAACATATC+CGG | 0.371811 | 7_4:+62222228 | None:intergenic |
| AGCCGCCGCCGCCTAGTTAC+CGG | 0.380041 | 7_4:-62222776 | Msa1169290:CDS |
| AAACCTGTTTCCTGCATCAT+AGG | 0.383280 | 7_4:-62222753 | Msa1169290:CDS |
| GGTCAAGCCTAATGATGATT+TGG | 0.403142 | 7_4:-62222127 | Msa1169290:CDS |
| CCTATGTTTACAGCACTAAC+AGG | 0.412018 | 7_4:+62221985 | None:intergenic |
| GTAGGTAAAATTGTGAATAA+TGG | 0.421445 | 7_4:+62222188 | None:intergenic |
| GATCGGACCCTTCTTGTGTT+TGG | 0.424209 | 7_4:+62222959 | None:intergenic |
| TTCACCACTTATTGCACTTG+TGG | 0.428594 | 7_4:+62222257 | None:intergenic |
| GCTTTACGAAATGGAGCATT+GGG | 0.433943 | 7_4:+62222429 | None:intergenic |
| TCACCACTTATTGCACTTGT+GGG | 0.436527 | 7_4:+62222258 | None:intergenic |
| TCACCTATGATGCAGGAAAC+AGG | 0.449664 | 7_4:+62222750 | None:intergenic |
| TGCATCAATGCTTTACGAAA+TGG | 0.450689 | 7_4:+62222420 | None:intergenic |
| TCCACATCCTTCTTATGTAC+AGG | 0.452205 | 7_4:+62221961 | None:intergenic |
| AATTGTGAATAATGGTGTAT+TGG | 0.455721 | 7_4:+62222196 | None:intergenic |
| TGGCAACTTGCACACAAATT+GGG | 0.455869 | 7_4:-62221859 | Msa1169290:CDS |
| GGCAACTATGAATTGTTTGT+TGG | 0.464340 | 7_4:+62222491 | None:intergenic |
| TTGGAGTCCAAATCATCATT+AGG | 0.466611 | 7_4:+62222120 | None:intergenic |
| ACCAGGAGAACAATCAAGCC+TGG | 0.470447 | 7_4:+62221749 | None:intergenic |
| GAAACAGGTTTCCGGTAACT+AGG | 0.472644 | 7_4:+62222765 | None:intergenic |
| GCTTCAGAGGTGACCATGAC+AGG | 0.474789 | 7_4:+62221883 | None:intergenic |
| GGAAAATGTGTTGTTGATGA+TGG | 0.476973 | 7_4:+62222663 | None:intergenic |
| TTCCGGTAACTAGGCGGCGG+CGG | 0.480520 | 7_4:+62222774 | None:intergenic |
| TGTTGTTGATGATGGAATAT+GGG | 0.481645 | 7_4:+62222671 | None:intergenic |
| TGCTTTACGAAATGGAGCAT+TGG | 0.484108 | 7_4:+62222428 | None:intergenic |
| CATAGGTCCTGTACATAAGA+AGG | 0.490399 | 7_4:-62221968 | Msa1169290:CDS |
| TGTGTTTGCGTTTCCTGTCA+TGG | 0.492509 | 7_4:-62221896 | Msa1169290:CDS |
| AATCATGTCGACCTTATTCA+AGG | 0.495710 | 7_4:+62222470 | None:intergenic |
| AACAACAAAACTATTGGAGT+TGG | 0.498251 | 7_4:-62222300 | Msa1169290:CDS |
| AACTATGAATTGTTTGTTGG+TGG | 0.503706 | 7_4:+62222494 | None:intergenic |
| TGAACAACGTTTAAGACTCA+AGG | 0.509002 | 7_4:-62221779 | Msa1169290:CDS |
| AAGAAGAAGATGAATGAAGA+AGG | 0.510009 | 7_4:-62222904 | Msa1169290:intron |
| GCATTGATGCAGCAGTCTAA+GGG | 0.516752 | 7_4:-62222408 | Msa1169290:CDS |
| ATGTTTCTTTCCAGGTGATA+CGG | 0.519326 | 7_4:-62222802 | Msa1169290:intron |
| AATTATCACCAAACACAAGA+AGG | 0.519504 | 7_4:-62222967 | Msa1169290:five_prime_UTR |
| ACAAAAGAAATAACATATCC+GGG | 0.524048 | 7_4:+62222229 | None:intergenic |
| TTAATAGATTGAGTGAGTCT+GGG | 0.528397 | 7_4:+62222520 | None:intergenic |
| TCATGGTCACCTCTGAAGCT+TGG | 0.529642 | 7_4:-62221879 | Msa1169290:CDS |
| ATGCTTCTAGGTTGTATTCG+AGG | 0.530680 | 7_4:-62222708 | Msa1169290:CDS |
| CCTGTTAGTGCTGTAAACAT+AGG | 0.535265 | 7_4:-62221985 | Msa1169290:CDS |
| ACTCCAAGTCAATCTTGAGC+AGG | 0.543001 | 7_4:-62222104 | Msa1169290:CDS |
| CGTCTTTCAGCATCACCAGC+AGG | 0.549665 | 7_4:+62222642 | None:intergenic |
| AATCCTGCTCAAGATTGACT+TGG | 0.550806 | 7_4:+62222101 | None:intergenic |
| TCCTGTACATAAGAAGGATG+TGG | 0.551184 | 7_4:-62221962 | Msa1169290:CDS |
| TTGGTGATAATTGAATGTTA+TGG | 0.551332 | 7_4:+62222978 | None:intergenic |
| GTACGCATCACCTATGATGC+AGG | 0.551576 | 7_4:+62222743 | None:intergenic |
| TGATGCTGAAAGACGTATGC+TGG | 0.558336 | 7_4:-62222634 | Msa1169290:CDS |
| AGGTCGACATGATTCATGAC+TGG | 0.563144 | 7_4:-62222461 | Msa1169290:CDS |
| ATTATGCATGATCATGATGA+TGG | 0.566083 | 7_4:-62222549 | Msa1169290:CDS |
| GTTTCTCAGTTCAAGACACA+CGG | 0.570872 | 7_4:-62222348 | Msa1169290:CDS |
| ACAAGTGCAATAAGTGGTGA+AGG | 0.579962 | 7_4:-62222255 | Msa1169290:CDS |
| AATAAGTGGTGAAGGAATCC+CGG | 0.582764 | 7_4:-62222247 | Msa1169290:CDS |
| TTCAAGATGACTTTCATACC+AGG | 0.585670 | 7_4:-62222383 | Msa1169290:CDS |
| ACATAAGAAGGATGTGGAGA+AGG | 0.587750 | 7_4:-62221956 | Msa1169290:CDS |
| AGGATTGACACGACTCCTGA+GGG | 0.593387 | 7_4:-62222084 | Msa1169290:CDS |
| AAGACTCAAGGGTTCAACCC+AGG | 0.594325 | 7_4:-62221767 | Msa1169290:CDS |
| TCATTAGGCTTGACCACAGG+TGG | 0.596499 | 7_4:+62222135 | None:intergenic |
| GAGATTTATTCGTCCACCTG+TGG | 0.603555 | 7_4:-62222148 | Msa1169290:CDS |
| TGCAAGTTGCCAAGCTTCAG+AGG | 0.608001 | 7_4:+62221870 | None:intergenic |
| CCAGGAGAACAATCAAGCCT+GGG | 0.608678 | 7_4:+62221750 | None:intergenic |
| GCAAACACAACAGCATACTC+TGG | 0.609863 | 7_4:+62221910 | None:intergenic |
| ATCATAGGTGATGCGTACAC+TGG | 0.610292 | 7_4:-62222738 | Msa1169290:CDS |
| GAACAACGTTTAAGACTCAA+GGG | 0.618602 | 7_4:-62221778 | Msa1169290:CDS |
| CTGCACAGCTTGTTGACTGT+AGG | 0.620635 | 7_4:+62222170 | None:intergenic |
| AGAAACAAGCTTAGAGACCC+TGG | 0.621910 | 7_4:+62222365 | None:intergenic |
| TCATCATTAGGCTTGACCAC+AGG | 0.622043 | 7_4:+62222132 | None:intergenic |
| ATTATCACCAAACACAAGAA+GGG | 0.624373 | 7_4:-62222966 | Msa1169290:five_prime_UTR |
| CAGGATTGACACGACTCCTG+AGG | 0.624798 | 7_4:-62222085 | Msa1169290:CDS |
| TCGAATACAACCTAGAAGCA+TGG | 0.625234 | 7_4:+62222710 | None:intergenic |
| GGTTTCCGGTAACTAGGCGG+CGG | 0.629970 | 7_4:+62222771 | None:intergenic |
| GTGCCCACAAGTGCAATAAG+TGG | 0.639388 | 7_4:-62222261 | Msa1169290:CDS |
| TTTCTCAGTTCAAGACACAC+GGG | 0.651312 | 7_4:-62222347 | Msa1169290:CDS |
| GTTGATAACGCACCAATTAG+GGG | 0.652792 | 7_4:-62222609 | Msa1169290:CDS |
| GATTGACACGACTCCTGAGG+GGG | 0.654054 | 7_4:-62222082 | Msa1169290:CDS |
| GTTGTTGATGATGGAATATG+GGG | 0.656551 | 7_4:+62222672 | None:intergenic |
| CTAACAGGAATATTGACTTG+TGG | 0.661965 | 7_4:+62222000 | None:intergenic |
| TCAAGATGACTTTCATACCA+GGG | 0.669658 | 7_4:-62222382 | Msa1169290:CDS |
| ACAGGTTTCCGGTAACTAGG+CGG | 0.715792 | 7_4:+62222768 | None:intergenic |
| GGATTGACACGACTCCTGAG+GGG | 0.733825 | 7_4:-62222083 | Msa1169290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAACAACAAAACTAT+TGG | - | chr7_4:62222445-62222464 | Msa1169290:CDS | 15.0% |
| !! | TATAAAAACAACAAAACTAT+TGG | - | chr7_4:62222445-62222464 | Msa1169290:CDS | 15.0% |
| !! | AACAAAAGAAATAACATATC+CGG | + | chr7_4:62222526-62222545 | None:intergenic | 20.0% |
| !!! | TGTTATTTCTTTTGTTTAAG+TGG | - | chr7_4:62222530-62222549 | Msa1169290:CDS | 20.0% |
| !!! | AAATAGATGATGCATTTTAA+CGG | + | chr7_4:62222935-62222954 | None:intergenic | 20.0% |
| !! | AACAAAAGAAATAACATATC+CGG | + | chr7_4:62222526-62222545 | None:intergenic | 20.0% |
| !!! | TGTTATTTCTTTTGTTTAAG+TGG | - | chr7_4:62222530-62222549 | Msa1169290:CDS | 20.0% |
| !!! | AAATAGATGATGCATTTTAA+CGG | + | chr7_4:62222935-62222954 | None:intergenic | 20.0% |
| !! | TTGGTGATAATTGAATGTTA+TGG | + | chr7_4:62221776-62221795 | None:intergenic | 25.0% |
| !!! | TCTATGTGATATTGCTATTT+TGG | - | chr7_4:62222171-62222190 | Msa1169290:CDS | 25.0% |
| ! | ACAAAAGAAATAACATATCC+GGG | + | chr7_4:62222525-62222544 | None:intergenic | 25.0% |
| ! | AATTGTGAATAATGGTGTAT+TGG | + | chr7_4:62222558-62222577 | None:intergenic | 25.0% |
| ! | GTAGGTAAAATTGTGAATAA+TGG | + | chr7_4:62222566-62222585 | None:intergenic | 25.0% |
| !! | GTTGTTCATGTTGTTTAAAT+CGG | + | chr7_4:62222960-62222979 | None:intergenic | 25.0% |
| !! | TTGGTGATAATTGAATGTTA+TGG | + | chr7_4:62221776-62221795 | None:intergenic | 25.0% |
| !!! | TCTATGTGATATTGCTATTT+TGG | - | chr7_4:62222171-62222190 | Msa1169290:CDS | 25.0% |
| ! | ACAAAAGAAATAACATATCC+GGG | + | chr7_4:62222525-62222544 | None:intergenic | 25.0% |
| ! | AATTGTGAATAATGGTGTAT+TGG | + | chr7_4:62222558-62222577 | None:intergenic | 25.0% |
| ! | GTAGGTAAAATTGTGAATAA+TGG | + | chr7_4:62222566-62222585 | None:intergenic | 25.0% |
| !! | GTTGTTCATGTTGTTTAAAT+CGG | + | chr7_4:62222960-62222979 | None:intergenic | 25.0% |
| AATTATCACCAAACACAAGA+AGG | - | chr7_4:62221784-62221803 | Msa1169290:CDS | 30.0% | |
| ATTATCACCAAACACAAGAA+GGG | - | chr7_4:62221785-62221804 | Msa1169290:CDS | 30.0% | |
| AAGAAGAAGATGAATGAAGA+AGG | - | chr7_4:62221847-62221866 | Msa1169290:CDS | 30.0% | |
| !! | TGTTGTTGATGATGGAATAT+GGG | + | chr7_4:62222083-62222102 | None:intergenic | 30.0% |
| ATTATGCATGATCATGATGA+TGG | - | chr7_4:62222202-62222221 | Msa1169290:CDS | 30.0% | |
| TTAATAGATTGAGTGAGTCT+GGG | + | chr7_4:62222234-62222253 | None:intergenic | 30.0% | |
| TTTAATAGATTGAGTGAGTC+TGG | + | chr7_4:62222235-62222254 | None:intergenic | 30.0% | |
| ! | AACTATGAATTGTTTGTTGG+TGG | + | chr7_4:62222260-62222279 | None:intergenic | 30.0% |
| ATTCATAGTTGCCTTGAATA+AGG | - | chr7_4:62222270-62222289 | Msa1169290:CDS | 30.0% | |
| AACAACAAAACTATTGGAGT+TGG | - | chr7_4:62222451-62222470 | Msa1169290:CDS | 30.0% | |
| ! | TGCATGTAACTTTTACTCAT+TGG | - | chr7_4:62222702-62222721 | Msa1169290:CDS | 30.0% |
| AATTATCACCAAACACAAGA+AGG | - | chr7_4:62221784-62221803 | Msa1169290:CDS | 30.0% | |
| ATTATCACCAAACACAAGAA+GGG | - | chr7_4:62221785-62221804 | Msa1169290:CDS | 30.0% | |
| AAGAAGAAGATGAATGAAGA+AGG | - | chr7_4:62221847-62221866 | Msa1169290:CDS | 30.0% | |
| !! | TGTTGTTGATGATGGAATAT+GGG | + | chr7_4:62222083-62222102 | None:intergenic | 30.0% |
| ATTATGCATGATCATGATGA+TGG | - | chr7_4:62222202-62222221 | Msa1169290:CDS | 30.0% | |
| TTAATAGATTGAGTGAGTCT+GGG | + | chr7_4:62222234-62222253 | None:intergenic | 30.0% | |
| TTTAATAGATTGAGTGAGTC+TGG | + | chr7_4:62222235-62222254 | None:intergenic | 30.0% | |
| ! | AACTATGAATTGTTTGTTGG+TGG | + | chr7_4:62222260-62222279 | None:intergenic | 30.0% |
| ATTCATAGTTGCCTTGAATA+AGG | - | chr7_4:62222270-62222289 | Msa1169290:CDS | 30.0% | |
| AACAACAAAACTATTGGAGT+TGG | - | chr7_4:62222451-62222470 | Msa1169290:CDS | 30.0% | |
| ! | TGCATGTAACTTTTACTCAT+TGG | - | chr7_4:62222702-62222721 | Msa1169290:CDS | 30.0% |
| ! | CGATTAGGGTTTCTTTTGAT+CGG | + | chr7_4:62221812-62221831 | None:intergenic | 35.0% |
| ! | TGCTTTGAATGTTTCTTTCC+AGG | - | chr7_4:62221941-62221960 | Msa1169290:CDS | 35.0% |
| ATGTTTCTTTCCAGGTGATA+CGG | - | chr7_4:62221949-62221968 | Msa1169290:CDS | 35.0% | |
| !! | GTTGTTGATGATGGAATATG+GGG | + | chr7_4:62222082-62222101 | None:intergenic | 35.0% |
| !! | GTGTTGTTGATGATGGAATA+TGG | + | chr7_4:62222084-62222103 | None:intergenic | 35.0% |
| ! | GGAAAATGTGTTGTTGATGA+TGG | + | chr7_4:62222091-62222110 | None:intergenic | 35.0% |
| !! | TTGTTGATAACGCACCAATT+AGG | - | chr7_4:62222140-62222159 | Msa1169290:CDS | 35.0% |
| !! | TGTTGATAACGCACCAATTA+GGG | - | chr7_4:62222141-62222160 | Msa1169290:CDS | 35.0% |
| CATAGATATGAACCCCTAAT+TGG | + | chr7_4:62222157-62222176 | None:intergenic | 35.0% | |
| GGCAACTATGAATTGTTTGT+TGG | + | chr7_4:62222263-62222282 | None:intergenic | 35.0% | |
| AATCATGTCGACCTTATTCA+AGG | + | chr7_4:62222284-62222303 | None:intergenic | 35.0% | |
| TGCATCAATGCTTTACGAAA+TGG | + | chr7_4:62222334-62222353 | None:intergenic | 35.0% | |
| TTCAAGATGACTTTCATACC+AGG | - | chr7_4:62222368-62222387 | Msa1169290:CDS | 35.0% | |
| TCAAGATGACTTTCATACCA+GGG | - | chr7_4:62222369-62222388 | Msa1169290:CDS | 35.0% | |
| TTGGAGTCCAAATCATCATT+AGG | + | chr7_4:62222634-62222653 | None:intergenic | 35.0% | |
| !! | CTAACAGGAATATTGACTTG+TGG | + | chr7_4:62222754-62222773 | None:intergenic | 35.0% |
| ! | TGAACAACGTTTAAGACTCA+AGG | - | chr7_4:62222972-62222991 | Msa1169290:five_prime_UTR | 35.0% |
| ! | GAACAACGTTTAAGACTCAA+GGG | - | chr7_4:62222973-62222992 | Msa1169290:five_prime_UTR | 35.0% |
| ! | CGATTAGGGTTTCTTTTGAT+CGG | + | chr7_4:62221812-62221831 | None:intergenic | 35.0% |
| ! | TGCTTTGAATGTTTCTTTCC+AGG | - | chr7_4:62221941-62221960 | Msa1169290:CDS | 35.0% |
| ATGTTTCTTTCCAGGTGATA+CGG | - | chr7_4:62221949-62221968 | Msa1169290:CDS | 35.0% | |
| !! | GTTGTTGATGATGGAATATG+GGG | + | chr7_4:62222082-62222101 | None:intergenic | 35.0% |
| !! | GTGTTGTTGATGATGGAATA+TGG | + | chr7_4:62222084-62222103 | None:intergenic | 35.0% |
| ! | GGAAAATGTGTTGTTGATGA+TGG | + | chr7_4:62222091-62222110 | None:intergenic | 35.0% |
| !! | TTGTTGATAACGCACCAATT+AGG | - | chr7_4:62222140-62222159 | Msa1169290:CDS | 35.0% |
| !! | TGTTGATAACGCACCAATTA+GGG | - | chr7_4:62222141-62222160 | Msa1169290:CDS | 35.0% |
| CATAGATATGAACCCCTAAT+TGG | + | chr7_4:62222157-62222176 | None:intergenic | 35.0% | |
| GGCAACTATGAATTGTTTGT+TGG | + | chr7_4:62222263-62222282 | None:intergenic | 35.0% | |
| AATCATGTCGACCTTATTCA+AGG | + | chr7_4:62222284-62222303 | None:intergenic | 35.0% | |
| TGCATCAATGCTTTACGAAA+TGG | + | chr7_4:62222334-62222353 | None:intergenic | 35.0% | |
| TTCAAGATGACTTTCATACC+AGG | - | chr7_4:62222368-62222387 | Msa1169290:CDS | 35.0% | |
| TCAAGATGACTTTCATACCA+GGG | - | chr7_4:62222369-62222388 | Msa1169290:CDS | 35.0% | |
| TTGGAGTCCAAATCATCATT+AGG | + | chr7_4:62222634-62222653 | None:intergenic | 35.0% | |
| !! | CTAACAGGAATATTGACTTG+TGG | + | chr7_4:62222754-62222773 | None:intergenic | 35.0% |
| ! | TGAACAACGTTTAAGACTCA+AGG | - | chr7_4:62222972-62222991 | Msa1169290:five_prime_UTR | 35.0% |
| ! | GAACAACGTTTAAGACTCAA+GGG | - | chr7_4:62222973-62222992 | Msa1169290:five_prime_UTR | 35.0% |
| AAACCTGTTTCCTGCATCAT+AGG | - | chr7_4:62221998-62222017 | Msa1169290:CDS | 40.0% | |
| TCGAATACAACCTAGAAGCA+TGG | + | chr7_4:62222044-62222063 | None:intergenic | 40.0% | |
| ATGCTTCTAGGTTGTATTCG+AGG | - | chr7_4:62222043-62222062 | Msa1169290:CDS | 40.0% | |
| ! | TCAACAACACATTTTCCTGC+TGG | - | chr7_4:62222094-62222113 | Msa1169290:CDS | 40.0% |
| !! | GTTGATAACGCACCAATTAG+GGG | - | chr7_4:62222142-62222161 | Msa1169290:CDS | 40.0% |
| ! | GCTTTACGAAATGGAGCATT+GGG | + | chr7_4:62222325-62222344 | None:intergenic | 40.0% |
| TGCTTTACGAAATGGAGCAT+TGG | + | chr7_4:62222326-62222345 | None:intergenic | 40.0% | |
| GTTTCTCAGTTCAAGACACA+CGG | - | chr7_4:62222403-62222422 | Msa1169290:CDS | 40.0% | |
| TTTCTCAGTTCAAGACACAC+GGG | - | chr7_4:62222404-62222423 | Msa1169290:CDS | 40.0% | |
| TCACCACTTATTGCACTTGT+GGG | + | chr7_4:62222496-62222515 | None:intergenic | 40.0% | |
| TTCACCACTTATTGCACTTG+TGG | + | chr7_4:62222497-62222516 | None:intergenic | 40.0% | |
| ACAAGTGCAATAAGTGGTGA+AGG | - | chr7_4:62222496-62222515 | Msa1169290:CDS | 40.0% | |
| AATAAGTGGTGAAGGAATCC+CGG | - | chr7_4:62222504-62222523 | Msa1169290:CDS | 40.0% | |
| GGTCAAGCCTAATGATGATT+TGG | - | chr7_4:62222624-62222643 | Msa1169290:CDS | 40.0% | |
| AATCCTGCTCAAGATTGACT+TGG | + | chr7_4:62222653-62222672 | None:intergenic | 40.0% | |
| CCTATGTTTACAGCACTAAC+AGG | + | chr7_4:62222769-62222788 | None:intergenic | 40.0% | |
| CCTGTTAGTGCTGTAAACAT+AGG | - | chr7_4:62222766-62222785 | Msa1169290:CDS | 40.0% | |
| CATAGGTCCTGTACATAAGA+AGG | - | chr7_4:62222783-62222802 | Msa1169290:CDS | 40.0% | |
| TCCTGTACATAAGAAGGATG+TGG | - | chr7_4:62222789-62222808 | Msa1169290:CDS | 40.0% | |
| TCCACATCCTTCTTATGTAC+AGG | + | chr7_4:62222793-62222812 | None:intergenic | 40.0% | |
| ACATAAGAAGGATGTGGAGA+AGG | - | chr7_4:62222795-62222814 | Msa1169290:intron | 40.0% | |
| TTGGCAACTTGCACACAAAT+TGG | - | chr7_4:62222891-62222910 | Msa1169290:intron | 40.0% | |
| TGGCAACTTGCACACAAATT+GGG | - | chr7_4:62222892-62222911 | Msa1169290:intron | 40.0% | |
| AAACCTGTTTCCTGCATCAT+AGG | - | chr7_4:62221998-62222017 | Msa1169290:CDS | 40.0% | |
| TCGAATACAACCTAGAAGCA+TGG | + | chr7_4:62222044-62222063 | None:intergenic | 40.0% | |
| ATGCTTCTAGGTTGTATTCG+AGG | - | chr7_4:62222043-62222062 | Msa1169290:CDS | 40.0% | |
| ! | TCAACAACACATTTTCCTGC+TGG | - | chr7_4:62222094-62222113 | Msa1169290:CDS | 40.0% |
| !! | GTTGATAACGCACCAATTAG+GGG | - | chr7_4:62222142-62222161 | Msa1169290:CDS | 40.0% |
| ! | GCTTTACGAAATGGAGCATT+GGG | + | chr7_4:62222325-62222344 | None:intergenic | 40.0% |
| TGCTTTACGAAATGGAGCAT+TGG | + | chr7_4:62222326-62222345 | None:intergenic | 40.0% | |
| GTTTCTCAGTTCAAGACACA+CGG | - | chr7_4:62222403-62222422 | Msa1169290:CDS | 40.0% | |
| TTTCTCAGTTCAAGACACAC+GGG | - | chr7_4:62222404-62222423 | Msa1169290:CDS | 40.0% | |
| TCACCACTTATTGCACTTGT+GGG | + | chr7_4:62222496-62222515 | None:intergenic | 40.0% | |
| TTCACCACTTATTGCACTTG+TGG | + | chr7_4:62222497-62222516 | None:intergenic | 40.0% | |
| ACAAGTGCAATAAGTGGTGA+AGG | - | chr7_4:62222496-62222515 | Msa1169290:CDS | 40.0% | |
| AATAAGTGGTGAAGGAATCC+CGG | - | chr7_4:62222504-62222523 | Msa1169290:CDS | 40.0% | |
| GGTCAAGCCTAATGATGATT+TGG | - | chr7_4:62222624-62222643 | Msa1169290:CDS | 40.0% | |
| AATCCTGCTCAAGATTGACT+TGG | + | chr7_4:62222653-62222672 | None:intergenic | 40.0% | |
| CCTATGTTTACAGCACTAAC+AGG | + | chr7_4:62222769-62222788 | None:intergenic | 40.0% | |
| CCTGTTAGTGCTGTAAACAT+AGG | - | chr7_4:62222766-62222785 | Msa1169290:CDS | 40.0% | |
| CATAGGTCCTGTACATAAGA+AGG | - | chr7_4:62222783-62222802 | Msa1169290:CDS | 40.0% | |
| TCCTGTACATAAGAAGGATG+TGG | - | chr7_4:62222789-62222808 | Msa1169290:CDS | 40.0% | |
| TCCACATCCTTCTTATGTAC+AGG | + | chr7_4:62222793-62222812 | None:intergenic | 40.0% | |
| ACATAAGAAGGATGTGGAGA+AGG | - | chr7_4:62222795-62222814 | Msa1169290:intron | 40.0% | |
| TTGGCAACTTGCACACAAAT+TGG | - | chr7_4:62222891-62222910 | Msa1169290:intron | 40.0% | |
| TGGCAACTTGCACACAAATT+GGG | - | chr7_4:62222892-62222911 | Msa1169290:intron | 40.0% | |
| GATGCGATGTGATGCGATTA+GGG | + | chr7_4:62221826-62221845 | None:intergenic | 45.0% | |
| GAAACAGGTTTCCGGTAACT+AGG | + | chr7_4:62221989-62222008 | None:intergenic | 45.0% | |
| TGATGCAGGAAACAGGTTTC+CGG | + | chr7_4:62221997-62222016 | None:intergenic | 45.0% | |
| TCACCTATGATGCAGGAAAC+AGG | + | chr7_4:62222004-62222023 | None:intergenic | 45.0% | |
| ATCATAGGTGATGCGTACAC+TGG | - | chr7_4:62222013-62222032 | Msa1169290:CDS | 45.0% | |
| ACTGGCAAAACCATGCTTCT+AGG | - | chr7_4:62222031-62222050 | Msa1169290:CDS | 45.0% | |
| TGATGCTGAAAGACGTATGC+TGG | - | chr7_4:62222117-62222136 | Msa1169290:CDS | 45.0% | |
| AGGTCGACATGATTCATGAC+TGG | - | chr7_4:62222290-62222309 | Msa1169290:CDS | 45.0% | |
| !! | AGCATTGATGCAGCAGTCTA+AGG | - | chr7_4:62222342-62222361 | Msa1169290:CDS | 45.0% |
| ! | GCATTGATGCAGCAGTCTAA+GGG | - | chr7_4:62222343-62222362 | Msa1169290:CDS | 45.0% |
| AGAAACAAGCTTAGAGACCC+TGG | + | chr7_4:62222389-62222408 | None:intergenic | 45.0% | |
| GAGATTTATTCGTCCACCTG+TGG | - | chr7_4:62222603-62222622 | Msa1169290:CDS | 45.0% | |
| TCATCATTAGGCTTGACCAC+AGG | + | chr7_4:62222622-62222641 | None:intergenic | 45.0% | |
| ACTCCAAGTCAATCTTGAGC+AGG | - | chr7_4:62222647-62222666 | Msa1169290:CDS | 45.0% | |
| GCAAACACAACAGCATACTC+TGG | + | chr7_4:62222844-62222863 | None:intergenic | 45.0% | |
| TGTGTTTGCGTTTCCTGTCA+TGG | - | chr7_4:62222855-62222874 | Msa1169290:intron | 45.0% | |
| GATGCGATGTGATGCGATTA+GGG | + | chr7_4:62221826-62221845 | None:intergenic | 45.0% | |
| GAAACAGGTTTCCGGTAACT+AGG | + | chr7_4:62221989-62222008 | None:intergenic | 45.0% | |
| TGATGCAGGAAACAGGTTTC+CGG | + | chr7_4:62221997-62222016 | None:intergenic | 45.0% | |
| TCACCTATGATGCAGGAAAC+AGG | + | chr7_4:62222004-62222023 | None:intergenic | 45.0% | |
| ATCATAGGTGATGCGTACAC+TGG | - | chr7_4:62222013-62222032 | Msa1169290:CDS | 45.0% | |
| ACTGGCAAAACCATGCTTCT+AGG | - | chr7_4:62222031-62222050 | Msa1169290:CDS | 45.0% | |
| TGATGCTGAAAGACGTATGC+TGG | - | chr7_4:62222117-62222136 | Msa1169290:CDS | 45.0% | |
| AGGTCGACATGATTCATGAC+TGG | - | chr7_4:62222290-62222309 | Msa1169290:CDS | 45.0% | |
| !! | AGCATTGATGCAGCAGTCTA+AGG | - | chr7_4:62222342-62222361 | Msa1169290:CDS | 45.0% |
| ! | GCATTGATGCAGCAGTCTAA+GGG | - | chr7_4:62222343-62222362 | Msa1169290:CDS | 45.0% |
| AGAAACAAGCTTAGAGACCC+TGG | + | chr7_4:62222389-62222408 | None:intergenic | 45.0% | |
| GAGATTTATTCGTCCACCTG+TGG | - | chr7_4:62222603-62222622 | Msa1169290:CDS | 45.0% | |
| TCATCATTAGGCTTGACCAC+AGG | + | chr7_4:62222622-62222641 | None:intergenic | 45.0% | |
| ACTCCAAGTCAATCTTGAGC+AGG | - | chr7_4:62222647-62222666 | Msa1169290:CDS | 45.0% | |
| GCAAACACAACAGCATACTC+TGG | + | chr7_4:62222844-62222863 | None:intergenic | 45.0% | |
| TGTGTTTGCGTTTCCTGTCA+TGG | - | chr7_4:62222855-62222874 | Msa1169290:intron | 45.0% | |
| !! | GATTATTATTATTATTATTA+TGG | - | chr7_4:62221903-62221922 | Msa1169290:CDS | 5.0% |
| !! | GATTATTATTATTATTATTA+TGG | - | chr7_4:62221903-62221922 | Msa1169290:CDS | 5.0% |
| GATCGGACCCTTCTTGTGTT+TGG | + | chr7_4:62221795-62221814 | None:intergenic | 50.0% | |
| CGATGCGATGTGATGCGATT+AGG | + | chr7_4:62221827-62221846 | None:intergenic | 50.0% | |
| ACAGGTTTCCGGTAACTAGG+CGG | + | chr7_4:62221986-62222005 | None:intergenic | 50.0% | |
| GTACGCATCACCTATGATGC+AGG | + | chr7_4:62222011-62222030 | None:intergenic | 50.0% | |
| GTGCCCACAAGTGCAATAAG+TGG | - | chr7_4:62222490-62222509 | Msa1169290:CDS | 50.0% | |
| !! | CTGCACAGCTTGTTGACTGT+AGG | + | chr7_4:62222584-62222603 | None:intergenic | 50.0% |
| TCATTAGGCTTGACCACAGG+TGG | + | chr7_4:62222619-62222638 | None:intergenic | 50.0% | |
| AGGATTGACACGACTCCTGA+GGG | - | chr7_4:62222667-62222686 | Msa1169290:CDS | 50.0% | |
| !! | TCATGGTCACCTCTGAAGCT+TGG | - | chr7_4:62222872-62222891 | Msa1169290:intron | 50.0% |
| TGCAAGTTGCCAAGCTTCAG+AGG | + | chr7_4:62222884-62222903 | None:intergenic | 50.0% | |
| AAGACTCAAGGGTTCAACCC+AGG | - | chr7_4:62222984-62223003 | Msa1169290:five_prime_UTR | 50.0% | |
| GATCGGACCCTTCTTGTGTT+TGG | + | chr7_4:62221795-62221814 | None:intergenic | 50.0% | |
| CGATGCGATGTGATGCGATT+AGG | + | chr7_4:62221827-62221846 | None:intergenic | 50.0% | |
| ACAGGTTTCCGGTAACTAGG+CGG | + | chr7_4:62221986-62222005 | None:intergenic | 50.0% | |
| GTACGCATCACCTATGATGC+AGG | + | chr7_4:62222011-62222030 | None:intergenic | 50.0% | |
| GTGCCCACAAGTGCAATAAG+TGG | - | chr7_4:62222490-62222509 | Msa1169290:CDS | 50.0% | |
| !! | CTGCACAGCTTGTTGACTGT+AGG | + | chr7_4:62222584-62222603 | None:intergenic | 50.0% |
| TCATTAGGCTTGACCACAGG+TGG | + | chr7_4:62222619-62222638 | None:intergenic | 50.0% | |
| AGGATTGACACGACTCCTGA+GGG | - | chr7_4:62222667-62222686 | Msa1169290:CDS | 50.0% | |
| !! | TCATGGTCACCTCTGAAGCT+TGG | - | chr7_4:62222872-62222891 | Msa1169290:intron | 50.0% |
| TGCAAGTTGCCAAGCTTCAG+AGG | + | chr7_4:62222884-62222903 | None:intergenic | 50.0% | |
| AAGACTCAAGGGTTCAACCC+AGG | - | chr7_4:62222984-62223003 | Msa1169290:five_prime_UTR | 50.0% | |
| CGTCTTTCAGCATCACCAGC+AGG | + | chr7_4:62222112-62222131 | None:intergenic | 55.0% | |
| CAGGATTGACACGACTCCTG+AGG | - | chr7_4:62222666-62222685 | Msa1169290:CDS | 55.0% | |
| GGATTGACACGACTCCTGAG+GGG | - | chr7_4:62222668-62222687 | Msa1169290:CDS | 55.0% | |
| GATTGACACGACTCCTGAGG+GGG | - | chr7_4:62222669-62222688 | Msa1169290:CDS | 55.0% | |
| ! | GCATTGACACAAACCCCCTC+AGG | + | chr7_4:62222685-62222704 | None:intergenic | 55.0% |
| GCTTCAGAGGTGACCATGAC+AGG | + | chr7_4:62222871-62222890 | None:intergenic | 55.0% | |
| CGTCTTTCAGCATCACCAGC+AGG | + | chr7_4:62222112-62222131 | None:intergenic | 55.0% | |
| CAGGATTGACACGACTCCTG+AGG | - | chr7_4:62222666-62222685 | Msa1169290:CDS | 55.0% | |
| GGATTGACACGACTCCTGAG+GGG | - | chr7_4:62222668-62222687 | Msa1169290:CDS | 55.0% | |
| GATTGACACGACTCCTGAGG+GGG | - | chr7_4:62222669-62222688 | Msa1169290:CDS | 55.0% | |
| ! | GCATTGACACAAACCCCCTC+AGG | + | chr7_4:62222685-62222704 | None:intergenic | 55.0% |
| GCTTCAGAGGTGACCATGAC+AGG | + | chr7_4:62222871-62222890 | None:intergenic | 55.0% | |
| GGCGGCTTAACCGTATCACC+TGG | + | chr7_4:62221962-62221981 | None:intergenic | 60.0% | |
| GGTTTCCGGTAACTAGGCGG+CGG | + | chr7_4:62221983-62222002 | None:intergenic | 60.0% | |
| GGCGGCTTAACCGTATCACC+TGG | + | chr7_4:62221962-62221981 | None:intergenic | 60.0% | |
| GGTTTCCGGTAACTAGGCGG+CGG | + | chr7_4:62221983-62222002 | None:intergenic | 60.0% | |
| TTCCGGTAACTAGGCGGCGG+CGG | + | chr7_4:62221980-62221999 | None:intergenic | 65.0% | |
| TTCCGGTAACTAGGCGGCGG+CGG | + | chr7_4:62221980-62221999 | None:intergenic | 65.0% | |
| AGCCGCCGCCGCCTAGTTAC+CGG | - | chr7_4:62221975-62221994 | Msa1169290:CDS | 70.0% | |
| AGCCGCCGCCGCCTAGTTAC+CGG | - | chr7_4:62221975-62221994 | Msa1169290:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 62221762 | 62223011 | 62221762 | ID=Msa1169290;Name=Msa1169290 |
| chr7_4 | mRNA | 62221762 | 62223011 | 62221762 | ID=Msa1169290-mRNA-1;Parent=Msa1169290;Name=Msa1169290-mRNA-1;_AED=0.04;_eAED=0.06;_QI=94|1|0.5|1|1|1|2|0|353 |
| chr7_4 | exon | 62221762 | 62222810 | 62221762 | ID=Msa1169290-mRNA-1:exon:19719;Parent=Msa1169290-mRNA-1 |
| chr7_4 | exon | 62222905 | 62223011 | 62222905 | ID=Msa1169290-mRNA-1:exon:19718;Parent=Msa1169290-mRNA-1 |
| chr7_4 | five_prime_UTR | 62222918 | 62223011 | 62222918 | ID=Msa1169290-mRNA-1:five_prime_utr;Parent=Msa1169290-mRNA-1 |
| chr7_4 | CDS | 62222905 | 62222917 | 62222905 | ID=Msa1169290-mRNA-1:cds;Parent=Msa1169290-mRNA-1 |
| chr7_4 | CDS | 62221762 | 62222810 | 62221762 | ID=Msa1169290-mRNA-1:cds;Parent=Msa1169290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
