Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968290 | sp|G0S8G9|IF2P_CHATD | 36.638 | 232 | 107 | 5 | 14 | 212 | 520 | 744 | 2.02e-34 | 137 |
| Msa0968290 | sp|G0S8G9|IF2P_CHATD | 46.789 | 109 | 56 | 1 | 235 | 343 | 860 | 966 | 1.13e-20 | 97.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968290 | G7L1S6 | 75.581 | 344 | 64 | 4 | 4 | 346 | 3 | 327 | 1.19e-174 | 502 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0792290 | Msa0968290 | 0.807573 | 4.731877e-50 | -8.615850e-47 |
| Msa0968290 | Msa1079100 | 0.853896 | 1.763992e-61 | -8.615850e-47 |
| Msa0968290 | Msa1124010 | 0.834673 | 2.616094e-56 | -8.615850e-47 |
| Msa0968290 | Msa1169290 | 0.960125 | 3.316694e-118 | -8.615850e-47 |
| Msa0968290 | Msa1177160 | 0.806692 | 7.269556e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968290 | MtrunA17_Chr4g0004141 | 69.122 | 353 | 63 | 9 | 4 | 345 | 3 | 320 | 3.39e-161 | 458 |
| Msa0968290 | MtrunA17_Chr4g0000991 | 54.673 | 214 | 82 | 5 | 9 | 214 | 56 | 262 | 1.42e-67 | 218 |
| Msa0968290 | MtrunA17_Chr1g0202021 | 51.046 | 239 | 77 | 7 | 9 | 215 | 743 | 973 | 2.79e-65 | 224 |
| Msa0968290 | MtrunA17_Chr1g0202021 | 60.317 | 126 | 41 | 1 | 225 | 341 | 1067 | 1192 | 1.13e-38 | 146 |
| Msa0968290 | MtrunA17_Chr1g0201991 | 50.000 | 252 | 80 | 8 | 2 | 215 | 215 | 458 | 1.04e-64 | 219 |
| Msa0968290 | MtrunA17_Chr1g0201991 | 61.290 | 124 | 39 | 1 | 225 | 339 | 552 | 675 | 3.33e-39 | 148 |
| Msa0968290 | MtrunA17_Chr4g0000221 | 53.000 | 200 | 72 | 7 | 9 | 194 | 32 | 223 | 9.56e-52 | 178 |
| Msa0968290 | MtrunA17_Chr7g0263861 | 80.851 | 94 | 18 | 0 | 253 | 346 | 140 | 233 | 2.08e-46 | 159 |
| Msa0968290 | MtrunA17_Chr7g0263861 | 100.000 | 35 | 0 | 0 | 4 | 38 | 53 | 87 | 2.53e-17 | 80.9 |
| Msa0968290 | MtrunA17_Chr7g0264901 | 36.491 | 285 | 133 | 9 | 16 | 264 | 36 | 308 | 9.53e-43 | 152 |
| Msa0968290 | MtrunA17_Chr7g0264471 | 41.441 | 222 | 103 | 9 | 16 | 215 | 55 | 271 | 1.95e-38 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968290 | AT1G76810.1 | 46.320 | 231 | 84 | 7 | 14 | 212 | 702 | 924 | 1.46e-55 | 196 |
| Msa0968290 | AT1G76810.1 | 53.175 | 126 | 50 | 1 | 225 | 341 | 1021 | 1146 | 2.31e-32 | 128 |
| Msa0968290 | AT1G76720.1 | 43.882 | 237 | 93 | 7 | 8 | 212 | 619 | 847 | 3.29e-54 | 192 |
| Msa0968290 | AT1G76720.1 | 41.600 | 125 | 53 | 3 | 225 | 339 | 944 | 1058 | 7.96e-18 | 85.5 |
| Msa0968290 | AT1G76720.2 | 43.882 | 237 | 93 | 7 | 8 | 212 | 652 | 880 | 3.93e-54 | 192 |
| Msa0968290 | AT1G76720.2 | 41.600 | 125 | 53 | 3 | 225 | 339 | 977 | 1091 | 9.89e-18 | 85.1 |
| Msa0968290 | AT1G21160.1 | 42.373 | 236 | 98 | 6 | 8 | 212 | 488 | 716 | 2.78e-49 | 177 |
| Msa0968290 | AT1G21160.1 | 46.825 | 126 | 58 | 1 | 225 | 341 | 813 | 938 | 7.90e-29 | 118 |
| Msa0968290 | AT2G27700.2 | 41.453 | 234 | 100 | 7 | 16 | 219 | 35 | 261 | 3.54e-43 | 156 |
| Msa0968290 | AT2G27700.2 | 47.619 | 126 | 57 | 1 | 225 | 341 | 353 | 478 | 1.39e-28 | 116 |
| Msa0968290 | AT2G27700.1 | 41.631 | 233 | 99 | 7 | 16 | 218 | 35 | 260 | 6.20e-43 | 155 |
| Msa0968290 | AT2G27700.1 | 47.619 | 126 | 57 | 1 | 225 | 341 | 352 | 477 | 1.55e-28 | 115 |
Find 93 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTGATATTGCTATTT+TGG | 0.172010 | 6_3:+98626427 | Msa0968290:CDS |
| TTGGCAACTTGCACACAAAT+TGG | 0.226218 | 6_3:+98627147 | Msa0968290:CDS |
| TGTTGATAACGCACCAATTA+GGG | 0.236097 | 6_3:+98626397 | Msa0968290:CDS |
| CGATGCGATGTGATGCGATT+AGG | 0.250163 | 6_3:-98626080 | None:intergenic |
| TTGTTGATAACGCACCAATT+AGG | 0.258555 | 6_3:+98626396 | Msa0968290:CDS |
| TTTAATAGATTGAGTGAGTC+TGG | 0.258728 | 6_3:-98626488 | None:intergenic |
| GTGTTGTTGATGATGGAATA+TGG | 0.285240 | 6_3:-98626337 | None:intergenic |
| CTTTCATACCAGGGTCTCTA+AGG | 0.302491 | 6_3:+98626634 | Msa0968290:CDS |
| CATAGATATGAACCCCTAAT+TGG | 0.307692 | 6_3:-98626410 | None:intergenic |
| AGCATTGATGCAGCAGTCTA+AGG | 0.316795 | 6_3:+98626598 | Msa0968290:CDS |
| ATTCATAGTTGCCTTGAATA+AGG | 0.327102 | 6_3:+98626526 | Msa0968290:CDS |
| GATGCGATGTGATGCGATTA+GGG | 0.340940 | 6_3:-98626079 | None:intergenic |
| TGATGCAGGAAACAGGTTTC+CGG | 0.348880 | 6_3:-98626250 | None:intergenic |
| ACTGGCAAAACCATGCTTCT+AGG | 0.351988 | 6_3:+98626287 | Msa0968290:CDS |
| GTTGTTCATGTTGTTTAAAT+CGG | 0.353506 | 6_3:-98627213 | None:intergenic |
| AACAAAAGAAATAACATATC+CGG | 0.371811 | 6_3:-98626779 | None:intergenic |
| AGCCGCCGCCGCCTAGTTAC+CGG | 0.380041 | 6_3:+98626231 | Msa0968290:CDS |
| AAACCTGTTTCCTGCATCAT+AGG | 0.383280 | 6_3:+98626254 | Msa0968290:CDS |
| GGTCAAGCCTAATGATGATT+TGG | 0.403142 | 6_3:+98626880 | Msa0968290:CDS |
| CCTATGTTTACAGCACTAAC+AGG | 0.412018 | 6_3:-98627022 | None:intergenic |
| GTAGGTAAAATTGTGAATAA+TGG | 0.421445 | 6_3:-98626819 | None:intergenic |
| GATCGGACCCTTCTTGTGTT+TGG | 0.424209 | 6_3:-98626048 | None:intergenic |
| TTCACCACTTATTGCACTTG+TGG | 0.428594 | 6_3:-98626750 | None:intergenic |
| GCTTTACGAAATGGAGCATT+GGG | 0.433943 | 6_3:-98626578 | None:intergenic |
| TCACCACTTATTGCACTTGT+GGG | 0.436527 | 6_3:-98626749 | None:intergenic |
| TCACCTATGATGCAGGAAAC+AGG | 0.449664 | 6_3:-98626257 | None:intergenic |
| TGCATCAATGCTTTACGAAA+TGG | 0.450689 | 6_3:-98626587 | None:intergenic |
| TCCACATCCTTCTTATGTAC+AGG | 0.452205 | 6_3:-98627046 | None:intergenic |
| AATTGTGAATAATGGTGTAT+TGG | 0.455721 | 6_3:-98626811 | None:intergenic |
| TGGCAACTTGCACACAAATT+GGG | 0.455869 | 6_3:+98627148 | Msa0968290:CDS |
| GGCAACTATGAATTGTTTGT+TGG | 0.464340 | 6_3:-98626516 | None:intergenic |
| TTGGAGTCCAAATCATCATT+AGG | 0.466611 | 6_3:-98626887 | None:intergenic |
| ACCAGGAGAACAATCAAGCC+TGG | 0.470447 | 6_3:-98627258 | None:intergenic |
| GAAACAGGTTTCCGGTAACT+AGG | 0.472644 | 6_3:-98626242 | None:intergenic |
| GCTTCAGAGGTGACCATGAC+AGG | 0.474789 | 6_3:-98627124 | None:intergenic |
| GGAAAATGTGTTGTTGATGA+TGG | 0.476973 | 6_3:-98626344 | None:intergenic |
| TTCCGGTAACTAGGCGGCGG+CGG | 0.480520 | 6_3:-98626233 | None:intergenic |
| TGTTGTTGATGATGGAATAT+GGG | 0.481645 | 6_3:-98626336 | None:intergenic |
| TGCTTTACGAAATGGAGCAT+TGG | 0.484108 | 6_3:-98626579 | None:intergenic |
| CATAGGTCCTGTACATAAGA+AGG | 0.490399 | 6_3:+98627039 | Msa0968290:CDS |
| TGTGTTTGCGTTTCCTGTCA+TGG | 0.492509 | 6_3:+98627111 | Msa0968290:CDS |
| AATCATGTCGACCTTATTCA+AGG | 0.495710 | 6_3:-98626537 | None:intergenic |
| AACAACAAAACTATTGGAGT+TGG | 0.498251 | 6_3:+98626707 | Msa0968290:CDS |
| AACTATGAATTGTTTGTTGG+TGG | 0.503706 | 6_3:-98626513 | None:intergenic |
| TGAACAACGTTTAAGACTCA+AGG | 0.509002 | 6_3:+98627228 | Msa0968290:CDS |
| AAGAAGAAGATGAATGAAGA+AGG | 0.510009 | 6_3:+98626103 | Msa0968290:exon |
| GCATTGATGCAGCAGTCTAA+GGG | 0.516752 | 6_3:+98626599 | Msa0968290:CDS |
| ATGTTTCTTTCCAGGTGATA+CGG | 0.519326 | 6_3:+98626205 | Msa0968290:intron |
| AATTATCACCAAACACAAGA+AGG | 0.519504 | 6_3:+98626040 | Msa0968290:five_prime_UTR |
| ACAAAAGAAATAACATATCC+GGG | 0.524048 | 6_3:-98626778 | None:intergenic |
| TTAATAGATTGAGTGAGTCT+GGG | 0.528397 | 6_3:-98626487 | None:intergenic |
| TCATGGTCACCTCTGAAGCT+TGG | 0.529642 | 6_3:+98627128 | Msa0968290:CDS |
| ATGCTTCTAGGTTGTATTCG+AGG | 0.530680 | 6_3:+98626299 | Msa0968290:CDS |
| CCTGTTAGTGCTGTAAACAT+AGG | 0.535265 | 6_3:+98627022 | Msa0968290:CDS |
| ACTCCAAGTCAATCTTGAGC+AGG | 0.543001 | 6_3:+98626903 | Msa0968290:CDS |
| CGTCTTTCAGCATCACCAGC+AGG | 0.549665 | 6_3:-98626365 | None:intergenic |
| AATCCTGCTCAAGATTGACT+TGG | 0.550806 | 6_3:-98626906 | None:intergenic |
| TCCTGTACATAAGAAGGATG+TGG | 0.551184 | 6_3:+98627045 | Msa0968290:CDS |
| TTGGTGATAATTGAATGTTA+TGG | 0.551332 | 6_3:-98626029 | None:intergenic |
| GTACGCATCACCTATGATGC+AGG | 0.551576 | 6_3:-98626264 | None:intergenic |
| TGATGCTGAAAGACGTATGC+TGG | 0.558336 | 6_3:+98626373 | Msa0968290:CDS |
| AGGTCGACATGATTCATGAC+TGG | 0.563144 | 6_3:+98626546 | Msa0968290:CDS |
| ATTATGCATGATCATGATGA+TGG | 0.566083 | 6_3:+98626458 | Msa0968290:CDS |
| ACAAGTGCAATAAGTGGTGA+AGG | 0.579962 | 6_3:+98626752 | Msa0968290:CDS |
| AATAAGTGGTGAAGGAATCC+CGG | 0.582764 | 6_3:+98626760 | Msa0968290:CDS |
| GTTTCTCAGTTCAAGACACA+CGG | 0.584684 | 6_3:+98626659 | Msa0968290:CDS |
| TTCAAGATGACTTTCATACC+AGG | 0.585670 | 6_3:+98626624 | Msa0968290:CDS |
| ACATAAGAAGGATGTGGAGA+AGG | 0.587750 | 6_3:+98627051 | Msa0968290:CDS |
| AGGATTGACACGACTCCTGA+GGG | 0.593387 | 6_3:+98626923 | Msa0968290:CDS |
| AAGACTCAAGGGTTCAACCC+AGG | 0.594325 | 6_3:+98627240 | Msa0968290:CDS |
| TCATTAGGCTTGACCACAGG+TGG | 0.596499 | 6_3:-98626872 | None:intergenic |
| GAGATTTATTCGTCCACCTG+TGG | 0.603555 | 6_3:+98626859 | Msa0968290:CDS |
| TGCAAGTTGCCAAGCTTCAG+AGG | 0.608001 | 6_3:-98627137 | None:intergenic |
| CCAGGAGAACAATCAAGCCT+GGG | 0.608678 | 6_3:-98627257 | None:intergenic |
| GCAAACACAACAGCATACTC+TGG | 0.609863 | 6_3:-98627097 | None:intergenic |
| ATCATAGGTGATGCGTACAC+TGG | 0.610292 | 6_3:+98626269 | Msa0968290:CDS |
| GAACAACGTTTAAGACTCAA+GGG | 0.618602 | 6_3:+98627229 | Msa0968290:CDS |
| CTGCACAGCTTGTTGACTGT+AGG | 0.620635 | 6_3:-98626837 | None:intergenic |
| AGAAACAACCTTAGAGACCC+TGG | 0.621910 | 6_3:-98626642 | None:intergenic |
| TCATCATTAGGCTTGACCAC+AGG | 0.622043 | 6_3:-98626875 | None:intergenic |
| ATTATCACCAAACACAAGAA+GGG | 0.624373 | 6_3:+98626041 | Msa0968290:five_prime_UTR |
| CAGGATTGACACGACTCCTG+AGG | 0.624798 | 6_3:+98626922 | Msa0968290:CDS |
| TCGAATACAACCTAGAAGCA+TGG | 0.625234 | 6_3:-98626297 | None:intergenic |
| GGTTTCCGGTAACTAGGCGG+CGG | 0.629970 | 6_3:-98626236 | None:intergenic |
| GTGCCCACAAGTGCAATAAG+TGG | 0.639388 | 6_3:+98626746 | Msa0968290:CDS |
| GTTGATAACGCACCAATTAG+GGG | 0.652792 | 6_3:+98626398 | Msa0968290:CDS |
| GATTGACACGACTCCTGAGG+GGG | 0.654054 | 6_3:+98626925 | Msa0968290:CDS |
| GTTGTTGATGATGGAATATG+GGG | 0.656551 | 6_3:-98626335 | None:intergenic |
| CTAACAGGAATATTGACTTG+TGG | 0.661965 | 6_3:-98627007 | None:intergenic |
| TTTCTCAGTTCAAGACACAC+GGG | 0.665887 | 6_3:+98626660 | Msa0968290:CDS |
| TCAAGATGACTTTCATACCA+GGG | 0.669658 | 6_3:+98626625 | Msa0968290:CDS |
| ACAGGTTTCCGGTAACTAGG+CGG | 0.715792 | 6_3:-98626239 | None:intergenic |
| GGATTGACACGACTCCTGAG+GGG | 0.733825 | 6_3:+98626924 | Msa0968290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAACAACAAAACTAT+TGG | + | chr6_3:98626701-98626720 | Msa0968290:CDS | 15.0% |
| !! | TATAAAAACAACAAAACTAT+TGG | + | chr6_3:98626701-98626720 | Msa0968290:CDS | 15.0% |
| !! | AACAAAAGAAATAACATATC+CGG | - | chr6_3:98626782-98626801 | None:intergenic | 20.0% |
| !!! | TGTTATTTCTTTTGTTTAAG+TGG | + | chr6_3:98626786-98626805 | Msa0968290:CDS | 20.0% |
| !!! | AAATAGATGATGCATTTTAA+CGG | - | chr6_3:98627191-98627210 | None:intergenic | 20.0% |
| !! | AACAAAAGAAATAACATATC+CGG | - | chr6_3:98626782-98626801 | None:intergenic | 20.0% |
| !!! | TGTTATTTCTTTTGTTTAAG+TGG | + | chr6_3:98626786-98626805 | Msa0968290:CDS | 20.0% |
| !!! | AAATAGATGATGCATTTTAA+CGG | - | chr6_3:98627191-98627210 | None:intergenic | 20.0% |
| !! | TTGGTGATAATTGAATGTTA+TGG | - | chr6_3:98626032-98626051 | None:intergenic | 25.0% |
| !!! | TCTATGTGATATTGCTATTT+TGG | + | chr6_3:98626427-98626446 | Msa0968290:CDS | 25.0% |
| ! | ACAAAAGAAATAACATATCC+GGG | - | chr6_3:98626781-98626800 | None:intergenic | 25.0% |
| ! | AATTGTGAATAATGGTGTAT+TGG | - | chr6_3:98626814-98626833 | None:intergenic | 25.0% |
| ! | GTAGGTAAAATTGTGAATAA+TGG | - | chr6_3:98626822-98626841 | None:intergenic | 25.0% |
| !! | GTTGTTCATGTTGTTTAAAT+CGG | - | chr6_3:98627216-98627235 | None:intergenic | 25.0% |
| !! | TTGGTGATAATTGAATGTTA+TGG | - | chr6_3:98626032-98626051 | None:intergenic | 25.0% |
| !!! | TCTATGTGATATTGCTATTT+TGG | + | chr6_3:98626427-98626446 | Msa0968290:CDS | 25.0% |
| ! | ACAAAAGAAATAACATATCC+GGG | - | chr6_3:98626781-98626800 | None:intergenic | 25.0% |
| ! | AATTGTGAATAATGGTGTAT+TGG | - | chr6_3:98626814-98626833 | None:intergenic | 25.0% |
| ! | GTAGGTAAAATTGTGAATAA+TGG | - | chr6_3:98626822-98626841 | None:intergenic | 25.0% |
| !! | GTTGTTCATGTTGTTTAAAT+CGG | - | chr6_3:98627216-98627235 | None:intergenic | 25.0% |
| AATTATCACCAAACACAAGA+AGG | + | chr6_3:98626040-98626059 | Msa0968290:five_prime_UTR | 30.0% | |
| ATTATCACCAAACACAAGAA+GGG | + | chr6_3:98626041-98626060 | Msa0968290:five_prime_UTR | 30.0% | |
| AAGAAGAAGATGAATGAAGA+AGG | + | chr6_3:98626103-98626122 | Msa0968290:exon | 30.0% | |
| !! | TGTTGTTGATGATGGAATAT+GGG | - | chr6_3:98626339-98626358 | None:intergenic | 30.0% |
| ATTATGCATGATCATGATGA+TGG | + | chr6_3:98626458-98626477 | Msa0968290:CDS | 30.0% | |
| TTAATAGATTGAGTGAGTCT+GGG | - | chr6_3:98626490-98626509 | None:intergenic | 30.0% | |
| TTTAATAGATTGAGTGAGTC+TGG | - | chr6_3:98626491-98626510 | None:intergenic | 30.0% | |
| ! | AACTATGAATTGTTTGTTGG+TGG | - | chr6_3:98626516-98626535 | None:intergenic | 30.0% |
| ATTCATAGTTGCCTTGAATA+AGG | + | chr6_3:98626526-98626545 | Msa0968290:CDS | 30.0% | |
| AACAACAAAACTATTGGAGT+TGG | + | chr6_3:98626707-98626726 | Msa0968290:CDS | 30.0% | |
| ! | TGCATGTAACTTTTACTCAT+TGG | + | chr6_3:98626958-98626977 | Msa0968290:CDS | 30.0% |
| AATTATCACCAAACACAAGA+AGG | + | chr6_3:98626040-98626059 | Msa0968290:five_prime_UTR | 30.0% | |
| ATTATCACCAAACACAAGAA+GGG | + | chr6_3:98626041-98626060 | Msa0968290:five_prime_UTR | 30.0% | |
| AAGAAGAAGATGAATGAAGA+AGG | + | chr6_3:98626103-98626122 | Msa0968290:exon | 30.0% | |
| !! | TGTTGTTGATGATGGAATAT+GGG | - | chr6_3:98626339-98626358 | None:intergenic | 30.0% |
| ATTATGCATGATCATGATGA+TGG | + | chr6_3:98626458-98626477 | Msa0968290:CDS | 30.0% | |
| TTAATAGATTGAGTGAGTCT+GGG | - | chr6_3:98626490-98626509 | None:intergenic | 30.0% | |
| TTTAATAGATTGAGTGAGTC+TGG | - | chr6_3:98626491-98626510 | None:intergenic | 30.0% | |
| ! | AACTATGAATTGTTTGTTGG+TGG | - | chr6_3:98626516-98626535 | None:intergenic | 30.0% |
| ATTCATAGTTGCCTTGAATA+AGG | + | chr6_3:98626526-98626545 | Msa0968290:CDS | 30.0% | |
| AACAACAAAACTATTGGAGT+TGG | + | chr6_3:98626707-98626726 | Msa0968290:CDS | 30.0% | |
| ! | TGCATGTAACTTTTACTCAT+TGG | + | chr6_3:98626958-98626977 | Msa0968290:CDS | 30.0% |
| ! | CGATTAGGGTTTCTTTTGAT+CGG | - | chr6_3:98626068-98626087 | None:intergenic | 35.0% |
| ! | TGCTTTGAATGTTTCTTTCC+AGG | + | chr6_3:98626197-98626216 | Msa0968290:intron | 35.0% |
| ATGTTTCTTTCCAGGTGATA+CGG | + | chr6_3:98626205-98626224 | Msa0968290:intron | 35.0% | |
| !! | GTTGTTGATGATGGAATATG+GGG | - | chr6_3:98626338-98626357 | None:intergenic | 35.0% |
| !! | GTGTTGTTGATGATGGAATA+TGG | - | chr6_3:98626340-98626359 | None:intergenic | 35.0% |
| ! | GGAAAATGTGTTGTTGATGA+TGG | - | chr6_3:98626347-98626366 | None:intergenic | 35.0% |
| !! | TTGTTGATAACGCACCAATT+AGG | + | chr6_3:98626396-98626415 | Msa0968290:CDS | 35.0% |
| !! | TGTTGATAACGCACCAATTA+GGG | + | chr6_3:98626397-98626416 | Msa0968290:CDS | 35.0% |
| CATAGATATGAACCCCTAAT+TGG | - | chr6_3:98626413-98626432 | None:intergenic | 35.0% | |
| GGCAACTATGAATTGTTTGT+TGG | - | chr6_3:98626519-98626538 | None:intergenic | 35.0% | |
| AATCATGTCGACCTTATTCA+AGG | - | chr6_3:98626540-98626559 | None:intergenic | 35.0% | |
| TGCATCAATGCTTTACGAAA+TGG | - | chr6_3:98626590-98626609 | None:intergenic | 35.0% | |
| TTCAAGATGACTTTCATACC+AGG | + | chr6_3:98626624-98626643 | Msa0968290:CDS | 35.0% | |
| TCAAGATGACTTTCATACCA+GGG | + | chr6_3:98626625-98626644 | Msa0968290:CDS | 35.0% | |
| TTGGAGTCCAAATCATCATT+AGG | - | chr6_3:98626890-98626909 | None:intergenic | 35.0% | |
| !! | CTAACAGGAATATTGACTTG+TGG | - | chr6_3:98627010-98627029 | None:intergenic | 35.0% |
| ! | TGAACAACGTTTAAGACTCA+AGG | + | chr6_3:98627228-98627247 | Msa0968290:CDS | 35.0% |
| ! | GAACAACGTTTAAGACTCAA+GGG | + | chr6_3:98627229-98627248 | Msa0968290:CDS | 35.0% |
| ! | CGATTAGGGTTTCTTTTGAT+CGG | - | chr6_3:98626068-98626087 | None:intergenic | 35.0% |
| ! | TGCTTTGAATGTTTCTTTCC+AGG | + | chr6_3:98626197-98626216 | Msa0968290:intron | 35.0% |
| ATGTTTCTTTCCAGGTGATA+CGG | + | chr6_3:98626205-98626224 | Msa0968290:intron | 35.0% | |
| !! | GTTGTTGATGATGGAATATG+GGG | - | chr6_3:98626338-98626357 | None:intergenic | 35.0% |
| !! | GTGTTGTTGATGATGGAATA+TGG | - | chr6_3:98626340-98626359 | None:intergenic | 35.0% |
| ! | GGAAAATGTGTTGTTGATGA+TGG | - | chr6_3:98626347-98626366 | None:intergenic | 35.0% |
| !! | TTGTTGATAACGCACCAATT+AGG | + | chr6_3:98626396-98626415 | Msa0968290:CDS | 35.0% |
| !! | TGTTGATAACGCACCAATTA+GGG | + | chr6_3:98626397-98626416 | Msa0968290:CDS | 35.0% |
| CATAGATATGAACCCCTAAT+TGG | - | chr6_3:98626413-98626432 | None:intergenic | 35.0% | |
| GGCAACTATGAATTGTTTGT+TGG | - | chr6_3:98626519-98626538 | None:intergenic | 35.0% | |
| AATCATGTCGACCTTATTCA+AGG | - | chr6_3:98626540-98626559 | None:intergenic | 35.0% | |
| TGCATCAATGCTTTACGAAA+TGG | - | chr6_3:98626590-98626609 | None:intergenic | 35.0% | |
| TTCAAGATGACTTTCATACC+AGG | + | chr6_3:98626624-98626643 | Msa0968290:CDS | 35.0% | |
| TCAAGATGACTTTCATACCA+GGG | + | chr6_3:98626625-98626644 | Msa0968290:CDS | 35.0% | |
| TTGGAGTCCAAATCATCATT+AGG | - | chr6_3:98626890-98626909 | None:intergenic | 35.0% | |
| !! | CTAACAGGAATATTGACTTG+TGG | - | chr6_3:98627010-98627029 | None:intergenic | 35.0% |
| ! | TGAACAACGTTTAAGACTCA+AGG | + | chr6_3:98627228-98627247 | Msa0968290:CDS | 35.0% |
| ! | GAACAACGTTTAAGACTCAA+GGG | + | chr6_3:98627229-98627248 | Msa0968290:CDS | 35.0% |
| AAACCTGTTTCCTGCATCAT+AGG | + | chr6_3:98626254-98626273 | Msa0968290:CDS | 40.0% | |
| TCGAATACAACCTAGAAGCA+TGG | - | chr6_3:98626300-98626319 | None:intergenic | 40.0% | |
| ATGCTTCTAGGTTGTATTCG+AGG | + | chr6_3:98626299-98626318 | Msa0968290:CDS | 40.0% | |
| ! | TCAACAACACATTTTCCTGC+TGG | + | chr6_3:98626350-98626369 | Msa0968290:CDS | 40.0% |
| !! | GTTGATAACGCACCAATTAG+GGG | + | chr6_3:98626398-98626417 | Msa0968290:CDS | 40.0% |
| ! | GCTTTACGAAATGGAGCATT+GGG | - | chr6_3:98626581-98626600 | None:intergenic | 40.0% |
| TGCTTTACGAAATGGAGCAT+TGG | - | chr6_3:98626582-98626601 | None:intergenic | 40.0% | |
| GTTTCTCAGTTCAAGACACA+CGG | + | chr6_3:98626659-98626678 | Msa0968290:CDS | 40.0% | |
| TTTCTCAGTTCAAGACACAC+GGG | + | chr6_3:98626660-98626679 | Msa0968290:CDS | 40.0% | |
| TCACCACTTATTGCACTTGT+GGG | - | chr6_3:98626752-98626771 | None:intergenic | 40.0% | |
| TTCACCACTTATTGCACTTG+TGG | - | chr6_3:98626753-98626772 | None:intergenic | 40.0% | |
| ACAAGTGCAATAAGTGGTGA+AGG | + | chr6_3:98626752-98626771 | Msa0968290:CDS | 40.0% | |
| AATAAGTGGTGAAGGAATCC+CGG | + | chr6_3:98626760-98626779 | Msa0968290:CDS | 40.0% | |
| GGTCAAGCCTAATGATGATT+TGG | + | chr6_3:98626880-98626899 | Msa0968290:CDS | 40.0% | |
| AATCCTGCTCAAGATTGACT+TGG | - | chr6_3:98626909-98626928 | None:intergenic | 40.0% | |
| CCTATGTTTACAGCACTAAC+AGG | - | chr6_3:98627025-98627044 | None:intergenic | 40.0% | |
| CCTGTTAGTGCTGTAAACAT+AGG | + | chr6_3:98627022-98627041 | Msa0968290:CDS | 40.0% | |
| CATAGGTCCTGTACATAAGA+AGG | + | chr6_3:98627039-98627058 | Msa0968290:CDS | 40.0% | |
| TCCTGTACATAAGAAGGATG+TGG | + | chr6_3:98627045-98627064 | Msa0968290:CDS | 40.0% | |
| TCCACATCCTTCTTATGTAC+AGG | - | chr6_3:98627049-98627068 | None:intergenic | 40.0% | |
| ACATAAGAAGGATGTGGAGA+AGG | + | chr6_3:98627051-98627070 | Msa0968290:CDS | 40.0% | |
| TTGGCAACTTGCACACAAAT+TGG | + | chr6_3:98627147-98627166 | Msa0968290:CDS | 40.0% | |
| TGGCAACTTGCACACAAATT+GGG | + | chr6_3:98627148-98627167 | Msa0968290:CDS | 40.0% | |
| AAACCTGTTTCCTGCATCAT+AGG | + | chr6_3:98626254-98626273 | Msa0968290:CDS | 40.0% | |
| TCGAATACAACCTAGAAGCA+TGG | - | chr6_3:98626300-98626319 | None:intergenic | 40.0% | |
| ATGCTTCTAGGTTGTATTCG+AGG | + | chr6_3:98626299-98626318 | Msa0968290:CDS | 40.0% | |
| ! | TCAACAACACATTTTCCTGC+TGG | + | chr6_3:98626350-98626369 | Msa0968290:CDS | 40.0% |
| !! | GTTGATAACGCACCAATTAG+GGG | + | chr6_3:98626398-98626417 | Msa0968290:CDS | 40.0% |
| ! | GCTTTACGAAATGGAGCATT+GGG | - | chr6_3:98626581-98626600 | None:intergenic | 40.0% |
| TGCTTTACGAAATGGAGCAT+TGG | - | chr6_3:98626582-98626601 | None:intergenic | 40.0% | |
| GTTTCTCAGTTCAAGACACA+CGG | + | chr6_3:98626659-98626678 | Msa0968290:CDS | 40.0% | |
| TTTCTCAGTTCAAGACACAC+GGG | + | chr6_3:98626660-98626679 | Msa0968290:CDS | 40.0% | |
| TCACCACTTATTGCACTTGT+GGG | - | chr6_3:98626752-98626771 | None:intergenic | 40.0% | |
| TTCACCACTTATTGCACTTG+TGG | - | chr6_3:98626753-98626772 | None:intergenic | 40.0% | |
| ACAAGTGCAATAAGTGGTGA+AGG | + | chr6_3:98626752-98626771 | Msa0968290:CDS | 40.0% | |
| AATAAGTGGTGAAGGAATCC+CGG | + | chr6_3:98626760-98626779 | Msa0968290:CDS | 40.0% | |
| GGTCAAGCCTAATGATGATT+TGG | + | chr6_3:98626880-98626899 | Msa0968290:CDS | 40.0% | |
| AATCCTGCTCAAGATTGACT+TGG | - | chr6_3:98626909-98626928 | None:intergenic | 40.0% | |
| CCTATGTTTACAGCACTAAC+AGG | - | chr6_3:98627025-98627044 | None:intergenic | 40.0% | |
| CCTGTTAGTGCTGTAAACAT+AGG | + | chr6_3:98627022-98627041 | Msa0968290:CDS | 40.0% | |
| CATAGGTCCTGTACATAAGA+AGG | + | chr6_3:98627039-98627058 | Msa0968290:CDS | 40.0% | |
| TCCTGTACATAAGAAGGATG+TGG | + | chr6_3:98627045-98627064 | Msa0968290:CDS | 40.0% | |
| TCCACATCCTTCTTATGTAC+AGG | - | chr6_3:98627049-98627068 | None:intergenic | 40.0% | |
| ACATAAGAAGGATGTGGAGA+AGG | + | chr6_3:98627051-98627070 | Msa0968290:CDS | 40.0% | |
| TTGGCAACTTGCACACAAAT+TGG | + | chr6_3:98627147-98627166 | Msa0968290:CDS | 40.0% | |
| TGGCAACTTGCACACAAATT+GGG | + | chr6_3:98627148-98627167 | Msa0968290:CDS | 40.0% | |
| GATGCGATGTGATGCGATTA+GGG | - | chr6_3:98626082-98626101 | None:intergenic | 45.0% | |
| GAAACAGGTTTCCGGTAACT+AGG | - | chr6_3:98626245-98626264 | None:intergenic | 45.0% | |
| TGATGCAGGAAACAGGTTTC+CGG | - | chr6_3:98626253-98626272 | None:intergenic | 45.0% | |
| TCACCTATGATGCAGGAAAC+AGG | - | chr6_3:98626260-98626279 | None:intergenic | 45.0% | |
| ATCATAGGTGATGCGTACAC+TGG | + | chr6_3:98626269-98626288 | Msa0968290:CDS | 45.0% | |
| ACTGGCAAAACCATGCTTCT+AGG | + | chr6_3:98626287-98626306 | Msa0968290:CDS | 45.0% | |
| TGATGCTGAAAGACGTATGC+TGG | + | chr6_3:98626373-98626392 | Msa0968290:CDS | 45.0% | |
| AGGTCGACATGATTCATGAC+TGG | + | chr6_3:98626546-98626565 | Msa0968290:CDS | 45.0% | |
| !! | AGCATTGATGCAGCAGTCTA+AGG | + | chr6_3:98626598-98626617 | Msa0968290:CDS | 45.0% |
| ! | GCATTGATGCAGCAGTCTAA+GGG | + | chr6_3:98626599-98626618 | Msa0968290:CDS | 45.0% |
| CTTTCATACCAGGGTCTCTA+AGG | + | chr6_3:98626634-98626653 | Msa0968290:CDS | 45.0% | |
| AGAAACAACCTTAGAGACCC+TGG | - | chr6_3:98626645-98626664 | None:intergenic | 45.0% | |
| GAGATTTATTCGTCCACCTG+TGG | + | chr6_3:98626859-98626878 | Msa0968290:CDS | 45.0% | |
| TCATCATTAGGCTTGACCAC+AGG | - | chr6_3:98626878-98626897 | None:intergenic | 45.0% | |
| ACTCCAAGTCAATCTTGAGC+AGG | + | chr6_3:98626903-98626922 | Msa0968290:CDS | 45.0% | |
| GCAAACACAACAGCATACTC+TGG | - | chr6_3:98627100-98627119 | None:intergenic | 45.0% | |
| TGTGTTTGCGTTTCCTGTCA+TGG | + | chr6_3:98627111-98627130 | Msa0968290:CDS | 45.0% | |
| GATGCGATGTGATGCGATTA+GGG | - | chr6_3:98626082-98626101 | None:intergenic | 45.0% | |
| GAAACAGGTTTCCGGTAACT+AGG | - | chr6_3:98626245-98626264 | None:intergenic | 45.0% | |
| TGATGCAGGAAACAGGTTTC+CGG | - | chr6_3:98626253-98626272 | None:intergenic | 45.0% | |
| TCACCTATGATGCAGGAAAC+AGG | - | chr6_3:98626260-98626279 | None:intergenic | 45.0% | |
| ATCATAGGTGATGCGTACAC+TGG | + | chr6_3:98626269-98626288 | Msa0968290:CDS | 45.0% | |
| ACTGGCAAAACCATGCTTCT+AGG | + | chr6_3:98626287-98626306 | Msa0968290:CDS | 45.0% | |
| TGATGCTGAAAGACGTATGC+TGG | + | chr6_3:98626373-98626392 | Msa0968290:CDS | 45.0% | |
| AGGTCGACATGATTCATGAC+TGG | + | chr6_3:98626546-98626565 | Msa0968290:CDS | 45.0% | |
| !! | AGCATTGATGCAGCAGTCTA+AGG | + | chr6_3:98626598-98626617 | Msa0968290:CDS | 45.0% |
| ! | GCATTGATGCAGCAGTCTAA+GGG | + | chr6_3:98626599-98626618 | Msa0968290:CDS | 45.0% |
| CTTTCATACCAGGGTCTCTA+AGG | + | chr6_3:98626634-98626653 | Msa0968290:CDS | 45.0% | |
| AGAAACAACCTTAGAGACCC+TGG | - | chr6_3:98626645-98626664 | None:intergenic | 45.0% | |
| GAGATTTATTCGTCCACCTG+TGG | + | chr6_3:98626859-98626878 | Msa0968290:CDS | 45.0% | |
| TCATCATTAGGCTTGACCAC+AGG | - | chr6_3:98626878-98626897 | None:intergenic | 45.0% | |
| ACTCCAAGTCAATCTTGAGC+AGG | + | chr6_3:98626903-98626922 | Msa0968290:CDS | 45.0% | |
| GCAAACACAACAGCATACTC+TGG | - | chr6_3:98627100-98627119 | None:intergenic | 45.0% | |
| TGTGTTTGCGTTTCCTGTCA+TGG | + | chr6_3:98627111-98627130 | Msa0968290:CDS | 45.0% | |
| !! | GATTATTATTATTATTATTA+TGG | + | chr6_3:98626159-98626178 | Msa0968290:intron | 5.0% |
| !! | GATTATTATTATTATTATTA+TGG | + | chr6_3:98626159-98626178 | Msa0968290:intron | 5.0% |
| GATCGGACCCTTCTTGTGTT+TGG | - | chr6_3:98626051-98626070 | None:intergenic | 50.0% | |
| CGATGCGATGTGATGCGATT+AGG | - | chr6_3:98626083-98626102 | None:intergenic | 50.0% | |
| ACAGGTTTCCGGTAACTAGG+CGG | - | chr6_3:98626242-98626261 | None:intergenic | 50.0% | |
| GTACGCATCACCTATGATGC+AGG | - | chr6_3:98626267-98626286 | None:intergenic | 50.0% | |
| GTGCCCACAAGTGCAATAAG+TGG | + | chr6_3:98626746-98626765 | Msa0968290:CDS | 50.0% | |
| !! | CTGCACAGCTTGTTGACTGT+AGG | - | chr6_3:98626840-98626859 | None:intergenic | 50.0% |
| TCATTAGGCTTGACCACAGG+TGG | - | chr6_3:98626875-98626894 | None:intergenic | 50.0% | |
| AGGATTGACACGACTCCTGA+GGG | + | chr6_3:98626923-98626942 | Msa0968290:CDS | 50.0% | |
| !! | TCATGGTCACCTCTGAAGCT+TGG | + | chr6_3:98627128-98627147 | Msa0968290:CDS | 50.0% |
| TGCAAGTTGCCAAGCTTCAG+AGG | - | chr6_3:98627140-98627159 | None:intergenic | 50.0% | |
| AAGACTCAAGGGTTCAACCC+AGG | + | chr6_3:98627240-98627259 | Msa0968290:CDS | 50.0% | |
| GATCGGACCCTTCTTGTGTT+TGG | - | chr6_3:98626051-98626070 | None:intergenic | 50.0% | |
| CGATGCGATGTGATGCGATT+AGG | - | chr6_3:98626083-98626102 | None:intergenic | 50.0% | |
| ACAGGTTTCCGGTAACTAGG+CGG | - | chr6_3:98626242-98626261 | None:intergenic | 50.0% | |
| GTACGCATCACCTATGATGC+AGG | - | chr6_3:98626267-98626286 | None:intergenic | 50.0% | |
| GTGCCCACAAGTGCAATAAG+TGG | + | chr6_3:98626746-98626765 | Msa0968290:CDS | 50.0% | |
| !! | CTGCACAGCTTGTTGACTGT+AGG | - | chr6_3:98626840-98626859 | None:intergenic | 50.0% |
| TCATTAGGCTTGACCACAGG+TGG | - | chr6_3:98626875-98626894 | None:intergenic | 50.0% | |
| AGGATTGACACGACTCCTGA+GGG | + | chr6_3:98626923-98626942 | Msa0968290:CDS | 50.0% | |
| !! | TCATGGTCACCTCTGAAGCT+TGG | + | chr6_3:98627128-98627147 | Msa0968290:CDS | 50.0% |
| TGCAAGTTGCCAAGCTTCAG+AGG | - | chr6_3:98627140-98627159 | None:intergenic | 50.0% | |
| AAGACTCAAGGGTTCAACCC+AGG | + | chr6_3:98627240-98627259 | Msa0968290:CDS | 50.0% | |
| CGTCTTTCAGCATCACCAGC+AGG | - | chr6_3:98626368-98626387 | None:intergenic | 55.0% | |
| CAGGATTGACACGACTCCTG+AGG | + | chr6_3:98626922-98626941 | Msa0968290:CDS | 55.0% | |
| GGATTGACACGACTCCTGAG+GGG | + | chr6_3:98626924-98626943 | Msa0968290:CDS | 55.0% | |
| GATTGACACGACTCCTGAGG+GGG | + | chr6_3:98626925-98626944 | Msa0968290:CDS | 55.0% | |
| ! | GCATTGACACAAACCCCCTC+AGG | - | chr6_3:98626941-98626960 | None:intergenic | 55.0% |
| GCTTCAGAGGTGACCATGAC+AGG | - | chr6_3:98627127-98627146 | None:intergenic | 55.0% | |
| CGTCTTTCAGCATCACCAGC+AGG | - | chr6_3:98626368-98626387 | None:intergenic | 55.0% | |
| CAGGATTGACACGACTCCTG+AGG | + | chr6_3:98626922-98626941 | Msa0968290:CDS | 55.0% | |
| GGATTGACACGACTCCTGAG+GGG | + | chr6_3:98626924-98626943 | Msa0968290:CDS | 55.0% | |
| GATTGACACGACTCCTGAGG+GGG | + | chr6_3:98626925-98626944 | Msa0968290:CDS | 55.0% | |
| ! | GCATTGACACAAACCCCCTC+AGG | - | chr6_3:98626941-98626960 | None:intergenic | 55.0% |
| GCTTCAGAGGTGACCATGAC+AGG | - | chr6_3:98627127-98627146 | None:intergenic | 55.0% | |
| GGCGGCTTAACCGTATCACC+TGG | - | chr6_3:98626218-98626237 | None:intergenic | 60.0% | |
| GGTTTCCGGTAACTAGGCGG+CGG | - | chr6_3:98626239-98626258 | None:intergenic | 60.0% | |
| GGCGGCTTAACCGTATCACC+TGG | - | chr6_3:98626218-98626237 | None:intergenic | 60.0% | |
| GGTTTCCGGTAACTAGGCGG+CGG | - | chr6_3:98626239-98626258 | None:intergenic | 60.0% | |
| TTCCGGTAACTAGGCGGCGG+CGG | - | chr6_3:98626236-98626255 | None:intergenic | 65.0% | |
| TTCCGGTAACTAGGCGGCGG+CGG | - | chr6_3:98626236-98626255 | None:intergenic | 65.0% | |
| AGCCGCCGCCGCCTAGTTAC+CGG | + | chr6_3:98626231-98626250 | Msa0968290:CDS | 70.0% | |
| AGCCGCCGCCGCCTAGTTAC+CGG | + | chr6_3:98626231-98626250 | Msa0968290:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 98626018 | 98627267 | 98626018 | ID=Msa0968290;Name=Msa0968290 |
| chr6_3 | mRNA | 98626018 | 98627267 | 98626018 | ID=Msa0968290-mRNA-1;Parent=Msa0968290;Name=Msa0968290-mRNA-1;_AED=0.04;_eAED=0.06;_QI=94|1|0.5|1|1|1|2|0|353 |
| chr6_3 | exon | 98626018 | 98626124 | 98626018 | ID=Msa0968290-mRNA-1:exon:18537;Parent=Msa0968290-mRNA-1 |
| chr6_3 | exon | 98626219 | 98627267 | 98626219 | ID=Msa0968290-mRNA-1:exon:18538;Parent=Msa0968290-mRNA-1 |
| chr6_3 | five_prime_UTR | 98626018 | 98626111 | 98626018 | ID=Msa0968290-mRNA-1:five_prime_utr;Parent=Msa0968290-mRNA-1 |
| chr6_3 | CDS | 98626112 | 98626124 | 98626112 | ID=Msa0968290-mRNA-1:cds;Parent=Msa0968290-mRNA-1 |
| chr6_3 | CDS | 98626219 | 98627267 | 98626219 | ID=Msa0968290-mRNA-1:cds;Parent=Msa0968290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
