AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124010 MtrunA17_Chr1g0202021 59.410 271 69 4 188 417 1067 1337 1.27e-88 293
Msa1124010 MtrunA17_Chr1g0202021 45.294 170 59 6 44 181 744 911 1.46e-31 127
Msa1124010 MtrunA17_Chr4g0004141 63.673 245 39 4 180 400 212 430 1.51e-88 275
Msa1124010 MtrunA17_Chr4g0004141 75.676 148 28 3 37 181 3 145 1.05e-70 229
Msa1124010 MtrunA17_Chr1g0201991 62.025 237 66 3 188 400 552 788 1.56e-84 275
Msa1124010 MtrunA17_Chr1g0201991 45.652 184 61 9 35 181 215 396 1.12e-30 124
Msa1124010 MtrunA17_Chr7g0263861 83.871 124 20 0 215 338 139 262 4.31e-68 217
Msa1124010 MtrunA17_Chr7g0263861 84.906 53 5 3 20 72 38 87 3.57e-19 87.0
Msa1124010 MtrunA17_Chr4g0000221 45.810 179 74 7 22 181 8 182 3.43e-32 127
Msa1124010 MtrunA17_Chr4g0000991 42.373 177 89 6 16 181 27 201 7.50e-30 119
Msa1124010 MtrunA17_Chr7g0264901 39.130 161 66 7 50 181 36 193 4.56e-21 94.4
Msa1124010 MtrunA17_Chr7g0264471 41.290 155 67 8 50 181 55 208 7.32e-19 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124010 AT1G76810.1 52.768 271 86 5 188 417 1021 1290 3.87e-70 240
Msa1124010 AT1G76810.1 39.362 188 76 7 28 179 678 863 5.85e-27 114
Msa1124010 AT1G21160.1 48.148 243 95 7 188 400 813 1054 1.72e-55 198
Msa1124010 AT1G21160.1 39.157 166 67 6 48 181 494 657 1.07e-23 104
Msa1124010 AT1G76720.1 49.160 238 85 6 188 400 944 1170 4.87e-53 191
Msa1124010 AT1G76720.1 40.491 163 63 6 50 180 627 787 9.57e-25 107
Msa1124010 AT1G76720.2 49.160 238 85 6 188 400 977 1203 6.52e-53 191
Msa1124010 AT1G76720.2 40.491 163 63 6 50 180 660 820 1.13e-24 107
Msa1124010 AT2G27700.2 49.606 127 55 1 188 305 353 479 1.71e-29 120
Msa1124010 AT2G27700.2 36.216 185 74 9 29 181 23 195 3.49e-20 92.8
Msa1124010 AT2G27700.1 49.606 127 55 1 188 305 352 478 1.76e-29 120
Msa1124010 AT2G27700.1 36.216 185 74 9 29 181 23 195 3.67e-20 92.8

Find 104 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCTTTATCAACCGGTTTA+AGG 0.103803 7_3:+75044540 None:intergenic
TCTATGTGATATTGCTATTT+TGG 0.172010 7_3:-75045889 Msa1124010:CDS
TTATTGTTGAAGACAAAATT+TGG 0.225479 7_3:+75045025 None:intergenic
TTGGCAACTTGCACACAAAT+TGG 0.226218 7_3:-75045173 Msa1124010:CDS
TTTAATAGATTGAGTGAGTC+TGG 0.258728 7_3:+75045834 None:intergenic
TCTTCTTCTTCGATGCGATT+AGG 0.267102 7_3:+75046230 None:intergenic
CTTTCATACCAAGGTCTCTA+AGG 0.302491 7_3:-75045688 Msa1124010:intron
CTTCTTCTTCGATGCGATTA+GGG 0.311832 7_3:+75046231 None:intergenic
CGCCGCCGCCGCCTAGTTAT+CGG 0.311977 7_3:-75046082 Msa1124010:CDS
AGCATTGATGCAGCAGTCTA+AGG 0.316795 7_3:-75045724 Msa1124010:CDS
TCGTGTTGAGGATGGAATAT+AGG 0.318215 7_3:+75045977 None:intergenic
TCACAAAAGAACATTGATAT+TGG 0.325612 7_3:-75044587 Msa1124010:CDS
GAGGAACGGCAGAAAATGTT+TGG 0.326899 7_3:-75044137 Msa1124010:CDS
ATTCATAGTTGCCTTGAATA+AGG 0.327102 7_3:-75045796 Msa1124010:CDS
AGGGCAGCAAGTAGTCATTA+AGG 0.347605 7_3:-75044513 Msa1124010:intron
CCTTTCTCCGCTTTATCAAC+CGG 0.361422 7_3:+75044533 None:intergenic
TCACCTATGATGCAGGAAAC+AGG 0.371395 7_3:+75046056 None:intergenic
ATGGAAGTTGGTGAAGAAAT+TGG 0.380089 7_3:-75043941 Msa1124010:CDS
TTGTTGATAACCCACCAATC+AGG 0.381453 7_3:-75045920 Msa1124010:CDS
TGCATGTAACTTTCACTCAT+TGG 0.386009 7_3:-75045362 Msa1124010:CDS
CGGTTTAAGGTTATTCTCAA+TGG 0.393167 7_3:+75044553 None:intergenic
GGTCAAGCCTAATGATGATT+TGG 0.403142 7_3:-75045440 Msa1124010:CDS
ACTGGCAAAACCATGCTTAT+CGG 0.408275 7_3:-75046026 Msa1124010:CDS
CCTATGTTTACAGCACTAAC+AGG 0.412018 7_3:+75045298 None:intergenic
AACCCTGTTTCCTGCATCAT+AGG 0.414622 7_3:-75046059 Msa1124010:CDS
CGTGTTGAGGATGGAATATA+GGG 0.417813 7_3:+75045978 None:intergenic
GATCGGACCCTTCTTGTGTT+TGG 0.424209 7_3:+75046267 None:intergenic
CAACTTGGTTTGCAGATTGT+TGG 0.426486 7_3:-75044170 Msa1124010:intron
GCTTTACGAAATGGAGCATT+GGG 0.433943 7_3:+75045744 None:intergenic
TGCATCAATGCTTTACGAAA+TGG 0.450689 7_3:+75045735 None:intergenic
TCCACATCCTTCTTATGTAC+AGG 0.452205 7_3:+75045274 None:intergenic
GTGATATGATTGAGGATGAA+TGG 0.454429 7_3:-75043960 Msa1124010:CDS
TGGCAACTTGCACACAAATT+GGG 0.455869 7_3:-75045172 Msa1124010:CDS
GGCAACTATGAATTGTTTGT+TGG 0.464340 7_3:+75045806 None:intergenic
CATTGAGAATAACCTTAAAC+CGG 0.464349 7_3:-75044552 Msa1124010:CDS
CGATAACTAGGCGGCGGCGG+CGG 0.464451 7_3:+75046083 None:intergenic
TTGGAGTCCAAATCATCATT+AGG 0.466611 7_3:+75045433 None:intergenic
GATAATTGAATTGAATGTTA+TGG 0.471610 7_3:+75046291 None:intergenic
GAAACAGGGTTCCGATAACT+AGG 0.472644 7_3:+75046071 None:intergenic
ATGCTTATCGGTTGTATTCG+AGG 0.472797 7_3:-75046014 Msa1124010:CDS
GCTTCAGAGGTGACCATGAC+AGG 0.474789 7_3:+75045196 None:intergenic
GACTTACATGAAAAGACTTA+AGG 0.477581 7_3:-75045098 Msa1124010:CDS
TTCCGATAACTAGGCGGCGG+CGG 0.478651 7_3:+75046080 None:intergenic
TGCTTTACGAAATGGAGCAT+TGG 0.484108 7_3:+75045743 None:intergenic
CATAGGTCCTGTACATAAGA+AGG 0.490399 7_3:-75045281 Msa1124010:CDS
AAGAAGAAGATGAATGAAGA+AGG 0.490750 7_3:-75046214 Msa1124010:intron
TGTGTTTGCGTTTCCTGTCA+TGG 0.492509 7_3:-75045209 Msa1124010:CDS
CCGGTTGATAAAGCGGAGAA+AGG 0.494425 7_3:-75044533 Msa1124010:CDS
GTTGACATTATGAATGATGA+TGG 0.494806 7_3:-75045864 Msa1124010:CDS
AATCATGTCGACCTTATTCA+AGG 0.495710 7_3:+75045785 None:intergenic
AGGAACGGCAGAAAATGTTT+GGG 0.497795 7_3:-75044136 Msa1124010:CDS
CATAGATGTAAACCCCTGAT+TGG 0.497927 7_3:+75045906 None:intergenic
TGTTGATAACCCACCAATCA+GGG 0.498373 7_3:-75045919 Msa1124010:CDS
AACTATGAATTGTTTGTTGG+TGG 0.503706 7_3:+75045809 None:intergenic
TGGCATGATCTTGAGAATGC+AGG 0.505991 7_3:+75045045 None:intergenic
ACTCCAAGTCAAACTTGAGC+AGG 0.515644 7_3:-75045417 Msa1124010:CDS
AATCCTGCTCAAGTTTGACT+TGG 0.516550 7_3:+75045414 None:intergenic
GCATTGATGCAGCAGTCTAA+GGG 0.516752 7_3:-75045723 Msa1124010:CDS
AATTATCACCAAACACAAGA+AGG 0.519504 7_3:-75046275 Msa1124010:CDS
GGTCTTTCAGCATCACCAGC+AGG 0.524228 7_3:+75045951 None:intergenic
TCCTCAACACGATTTCCTGC+TGG 0.524341 7_3:-75045966 Msa1124010:CDS
TTAATAGATTGAGTGAGTCT+GGG 0.528397 7_3:+75045835 None:intergenic
TCATGGTCACCTCTGAAGCT+TGG 0.529642 7_3:-75045192 Msa1124010:CDS
GATGTAAACCCCTGATTGGT+GGG 0.534620 7_3:+75045910 None:intergenic
CCTGTTAGTGCTGTAAACAT+AGG 0.535265 7_3:-75045298 Msa1124010:CDS
TGATGCTGAAAGACCTATGC+TGG 0.541381 7_3:-75045943 Msa1124010:CDS
CGGTTGATAAAGCGGAGAAA+GGG 0.545541 7_3:-75044532 Msa1124010:CDS
TCCTGTACATAAGAAGGATG+TGG 0.551184 7_3:-75045275 Msa1124010:CDS
GTACGCATCACCTATGATGC+AGG 0.551576 7_3:+75046049 None:intergenic
GCAGGAAATCGTGTTGAGGA+TGG 0.556787 7_3:+75045969 None:intergenic
AGAAACAACCTTAGAGACCT+TGG 0.558351 7_3:+75045680 None:intergenic
AAAGAAAGATTCTGCTGATG+AGG 0.561211 7_3:-75045068 Msa1124010:CDS
GATTGAGGATGAATGGAAGT+TGG 0.562484 7_3:-75043953 Msa1124010:CDS
AGGTCGACATGATTCATGAC+TGG 0.563144 7_3:-75045776 Msa1124010:CDS
CCTTAAACCGGTTGATAAAG+CGG 0.563826 7_3:-75044540 Msa1124010:CDS
AGATGTAAACCCCTGATTGG+TGG 0.566011 7_3:+75045909 None:intergenic
GATTGTTGGCAGCAATTCTG+AGG 0.566245 7_3:-75044156 Msa1124010:CDS
TTTAAGGTTATTCTCAATGG+AGG 0.578938 7_3:+75044556 None:intergenic
CACCTATGATGCAGGAAACA+GGG 0.584535 7_3:+75046057 None:intergenic
ACATAAGAAGGATGTGGAGA+AGG 0.587750 7_3:-75045269 Msa1124010:CDS
TTGGCAGCAATTCTGAGGAA+CGG 0.593050 7_3:-75044151 Msa1124010:CDS
AGGATTGACACGACTCCTGA+GGG 0.593387 7_3:-75045397 Msa1124010:CDS
GGGTTATCAACAACCAGCAT+AGG 0.595374 7_3:+75045930 None:intergenic
TCATTAGGCTTGACCACAGG+TGG 0.596499 7_3:+75045448 None:intergenic
GAGATTTATTCGTCCACCTG+TGG 0.603555 7_3:-75045461 Msa1124010:CDS
TGCAAGTTGCCAAGCTTCAG+AGG 0.608001 7_3:+75045183 None:intergenic
GCAAACACAACAGCATACTC+TGG 0.609863 7_3:+75045223 None:intergenic
ATCATAGGTGATGCGTACAC+TGG 0.610292 7_3:-75046044 Msa1124010:CDS
GATCTAGGGTGATATGATTG+AGG 0.613649 7_3:-75043968 Msa1124010:intron
GGGTTCCGATAACTAGGCGG+CGG 0.620140 7_3:+75046077 None:intergenic
TCATCATTAGGCTTGACCAC+AGG 0.622043 7_3:+75045445 None:intergenic
ATTATCACCAAACACAAGAA+GGG 0.624373 7_3:-75046274 Msa1124010:CDS
CAGGATTGACACGACTCCTG+AGG 0.624798 7_3:-75045398 Msa1124010:CDS
ACCAGCAGGAAATCGTGTTG+AGG 0.632195 7_3:+75045965 None:intergenic
TTACATGAAAAGACTTAAGG+AGG 0.633295 7_3:-75045095 Msa1124010:CDS
AACGGCAGAAAATGTTTGGG+AGG 0.637423 7_3:-75044133 Msa1124010:CDS
GTTGATAACCCACCAATCAG+GGG 0.646530 7_3:-75045918 Msa1124010:CDS
TCAAGATGACTTTCATACCA+AGG 0.654036 7_3:-75045697 Msa1124010:CDS
GATTGACACGACTCCTGAGG+GGG 0.654054 7_3:-75045395 Msa1124010:CDS
TCGAATACAACCGATAAGCA+TGG 0.657228 7_3:+75046016 None:intergenic
CTAACAGGAATATTGACTTG+TGG 0.661965 7_3:+75045313 None:intergenic
TATTCTCAATGGAGGCAATG+CGG 0.721051 7_3:+75044564 None:intergenic
GGATTGACACGACTCCTGAG+GGG 0.733825 7_3:-75045396 Msa1124010:CDS
ACAGGGTTCCGATAACTAGG+CGG 0.768874 7_3:+75046074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGATTATGATTATTATTA+TGG - chr7_3:75044077-75044096 Msa1124010:intron 10.0%
!! ATTGATTATGATTATTATTA+TGG - chr7_3:75044077-75044096 Msa1124010:intron 10.0%
!! TATAAAAACAACAAAACTAT+TGG - chr7_3:75044615-75044634 Msa1124010:intron 15.0%
!!! AATTAGCAATTCTATATTTT+CGG - chr7_3:75045409-75045428 Msa1124010:CDS 15.0%
!! AATGTGTATTTAACTATTTA+TGG - chr7_3:75046200-75046219 Msa1124010:intron 15.0%
!! TATTTAACTATTTATGGATT+TGG - chr7_3:75046206-75046225 Msa1124010:intron 15.0%
!! TATAAAAACAACAAAACTAT+TGG - chr7_3:75044615-75044634 Msa1124010:intron 15.0%
!!! AATTAGCAATTCTATATTTT+CGG - chr7_3:75045409-75045428 Msa1124010:CDS 15.0%
!! AATGTGTATTTAACTATTTA+TGG - chr7_3:75046200-75046219 Msa1124010:intron 15.0%
!! TATTTAACTATTTATGGATT+TGG - chr7_3:75046206-75046225 Msa1124010:intron 15.0%
!! GATAATTGAATTGAATGTTA+TGG + chr7_3:75043946-75043965 None:intergenic 20.0%
!! AACAATAGAAATAACATATC+CGG + chr7_3:75044696-75044715 None:intergenic 20.0%
!!! TGTTATTTCTATTGTTTAAG+TGG - chr7_3:75044700-75044719 Msa1124010:intron 20.0%
!!! AAATAGATGATGCATTTTAA+CGG + chr7_3:75045105-75045124 None:intergenic 20.0%
!! TTATTGTTGAAGACAAAATT+TGG + chr7_3:75045212-75045231 None:intergenic 20.0%
!!! AAATTTTGTCTTCAACAATA+AGG - chr7_3:75045211-75045230 Msa1124010:CDS 20.0%
!!! ATTAGCAATTCTATATTTTC+GGG - chr7_3:75045410-75045429 Msa1124010:CDS 20.0%
!!! ACTAGTTTATGATAAAACAA+CGG + chr7_3:75045912-75045931 None:intergenic 20.0%
!! TTTATTATTAATGACTTACC+CGG + chr7_3:75046164-75046183 None:intergenic 20.0%
!!! ACAATATAACTTTTAAGAGA+CGG + chr7_3:75046237-75046256 None:intergenic 20.0%
!! TATTGTTGAATTATTGATCT+AGG - chr7_3:75046251-75046270 Msa1124010:CDS 20.0%
!! ATTGTTGAATTATTGATCTA+GGG - chr7_3:75046252-75046271 Msa1124010:CDS 20.0%
!! GATAATTGAATTGAATGTTA+TGG + chr7_3:75043946-75043965 None:intergenic 20.0%
!! AACAATAGAAATAACATATC+CGG + chr7_3:75044696-75044715 None:intergenic 20.0%
!!! TGTTATTTCTATTGTTTAAG+TGG - chr7_3:75044700-75044719 Msa1124010:intron 20.0%
!!! AAATAGATGATGCATTTTAA+CGG + chr7_3:75045105-75045124 None:intergenic 20.0%
!! TTATTGTTGAAGACAAAATT+TGG + chr7_3:75045212-75045231 None:intergenic 20.0%
!!! AAATTTTGTCTTCAACAATA+AGG - chr7_3:75045211-75045230 Msa1124010:CDS 20.0%
!!! ATTAGCAATTCTATATTTTC+GGG - chr7_3:75045410-75045429 Msa1124010:CDS 20.0%
!!! ACTAGTTTATGATAAAACAA+CGG + chr7_3:75045912-75045931 None:intergenic 20.0%
!! TTTATTATTAATGACTTACC+CGG + chr7_3:75046164-75046183 None:intergenic 20.0%
!!! ACAATATAACTTTTAAGAGA+CGG + chr7_3:75046237-75046256 None:intergenic 20.0%
!! TATTGTTGAATTATTGATCT+AGG - chr7_3:75046251-75046270 Msa1124010:CDS 20.0%
!! ATTGTTGAATTATTGATCTA+GGG - chr7_3:75046252-75046271 Msa1124010:CDS 20.0%
!!! TCTATGTGATATTGCTATTT+TGG - chr7_3:75044345-75044364 Msa1124010:intron 25.0%
! ACAATAGAAATAACATATCC+GGG + chr7_3:75044695-75044714 None:intergenic 25.0%
! AATTGTGAATAATGGTGTAT+TGG + chr7_3:75044728-75044747 None:intergenic 25.0%
! GTAGGTAAAATTGTGAATAA+TGG + chr7_3:75044736-75044755 None:intergenic 25.0%
!!! CATAACATTTTTTCTCATTG+TGG - chr7_3:75045293-75045312 Msa1124010:CDS 25.0%
!! TTTTGTGAAGGAATACAAAT+TGG + chr7_3:75045635-75045654 None:intergenic 25.0%
!! ATATCAATGTTCTTTTGTGA+AGG + chr7_3:75045647-75045666 None:intergenic 25.0%
! TCACAAAAGAACATTGATAT+TGG - chr7_3:75045647-75045666 Msa1124010:intron 25.0%
! ACAAAATTATTCCCCAATAA+AGG - chr7_3:75045786-75045805 Msa1124010:CDS 25.0%
! CAAAATTATTCCCCAATAAA+GGG - chr7_3:75045787-75045806 Msa1124010:CDS 25.0%
! TATCTCAAATTCCCTTTATT+GGG + chr7_3:75045801-75045820 None:intergenic 25.0%
! ATATCTCAAATTCCCTTTAT+TGG + chr7_3:75045802-75045821 None:intergenic 25.0%
!! AATAAAGGGAATTTGAGATA+TGG - chr7_3:75045801-75045820 Msa1124010:CDS 25.0%
!!! TTTTTCAACATCACAATCAT+AGG + chr7_3:75045846-75045865 None:intergenic 25.0%
!! AACTATTTATGGATTTGGTT+TGG - chr7_3:75046211-75046230 Msa1124010:intron 25.0%
!!! TCTATGTGATATTGCTATTT+TGG - chr7_3:75044345-75044364 Msa1124010:intron 25.0%
! ACAATAGAAATAACATATCC+GGG + chr7_3:75044695-75044714 None:intergenic 25.0%
! AATTGTGAATAATGGTGTAT+TGG + chr7_3:75044728-75044747 None:intergenic 25.0%
! GTAGGTAAAATTGTGAATAA+TGG + chr7_3:75044736-75044755 None:intergenic 25.0%
!!! CATAACATTTTTTCTCATTG+TGG - chr7_3:75045293-75045312 Msa1124010:CDS 25.0%
!! TTTTGTGAAGGAATACAAAT+TGG + chr7_3:75045635-75045654 None:intergenic 25.0%
!! ATATCAATGTTCTTTTGTGA+AGG + chr7_3:75045647-75045666 None:intergenic 25.0%
! TCACAAAAGAACATTGATAT+TGG - chr7_3:75045647-75045666 Msa1124010:intron 25.0%
! ACAAAATTATTCCCCAATAA+AGG - chr7_3:75045786-75045805 Msa1124010:CDS 25.0%
! CAAAATTATTCCCCAATAAA+GGG - chr7_3:75045787-75045806 Msa1124010:CDS 25.0%
! TATCTCAAATTCCCTTTATT+GGG + chr7_3:75045801-75045820 None:intergenic 25.0%
! ATATCTCAAATTCCCTTTAT+TGG + chr7_3:75045802-75045821 None:intergenic 25.0%
!! AATAAAGGGAATTTGAGATA+TGG - chr7_3:75045801-75045820 Msa1124010:CDS 25.0%
!!! TTTTTCAACATCACAATCAT+AGG + chr7_3:75045846-75045865 None:intergenic 25.0%
!! AACTATTTATGGATTTGGTT+TGG - chr7_3:75046211-75046230 Msa1124010:intron 25.0%
AATTATCACCAAACACAAGA+AGG - chr7_3:75043959-75043978 Msa1124010:CDS 30.0%
ATTATCACCAAACACAAGAA+GGG - chr7_3:75043960-75043979 Msa1124010:CDS 30.0%
! AGGGTTTCTTTTCTTTTGAT+CGG + chr7_3:75043987-75044006 None:intergenic 30.0%
AAGAAGAAGATGAATGAAGA+AGG - chr7_3:75044020-75044039 Msa1124010:intron 30.0%
GTTGACATTATGAATGATGA+TGG - chr7_3:75044370-75044389 Msa1124010:intron 30.0%
TTAATAGATTGAGTGAGTCT+GGG + chr7_3:75044402-75044421 None:intergenic 30.0%
TTTAATAGATTGAGTGAGTC+TGG + chr7_3:75044403-75044422 None:intergenic 30.0%
! AACTATGAATTGTTTGTTGG+TGG + chr7_3:75044428-75044447 None:intergenic 30.0%
ATTCATAGTTGCCTTGAATA+AGG - chr7_3:75044438-75044457 Msa1124010:intron 30.0%
AACAACAAAACTATTGGAGT+TGG - chr7_3:75044621-75044640 Msa1124010:intron 30.0%
GACTTACATGAAAAGACTTA+AGG - chr7_3:75045136-75045155 Msa1124010:CDS 30.0%
TTACATGAAAAGACTTAAGG+AGG - chr7_3:75045139-75045158 Msa1124010:CDS 30.0%
ACATCTACTCACAAAACAAT+GGG + chr7_3:75045239-75045258 None:intergenic 30.0%
! TTGTTTTCTCTGCATTAGAT+TGG - chr7_3:75045337-75045356 Msa1124010:CDS 30.0%
! TGTTTTCTCTGCATTAGATT+GGG - chr7_3:75045338-75045357 Msa1124010:CDS 30.0%
ACACAAAGCATAAAACAGAA+TGG + chr7_3:75045478-75045497 None:intergenic 30.0%
! TGCAATGCACAAAATTTGTT+TGG - chr7_3:75045563-75045582 Msa1124010:intron 30.0%
! TTTAAGGTTATTCTCAATGG+AGG + chr7_3:75045681-75045700 None:intergenic 30.0%
CATTGAGAATAACCTTAAAC+CGG - chr7_3:75045682-75045701 Msa1124010:intron 30.0%
ATCTCAAATTCCCTTTATTG+GGG + chr7_3:75045800-75045819 None:intergenic 30.0%
CGGCTACAAATAACTTAAAA+CGG + chr7_3:75045892-75045911 None:intergenic 30.0%
TCTTAATGTTCTGTTCAACT+TGG - chr7_3:75046049-75046068 Msa1124010:CDS 30.0%
AATTATCACCAAACACAAGA+AGG - chr7_3:75043959-75043978 Msa1124010:CDS 30.0%
ATTATCACCAAACACAAGAA+GGG - chr7_3:75043960-75043979 Msa1124010:CDS 30.0%
! AGGGTTTCTTTTCTTTTGAT+CGG + chr7_3:75043987-75044006 None:intergenic 30.0%
AAGAAGAAGATGAATGAAGA+AGG - chr7_3:75044020-75044039 Msa1124010:intron 30.0%
GTTGACATTATGAATGATGA+TGG - chr7_3:75044370-75044389 Msa1124010:intron 30.0%
TTAATAGATTGAGTGAGTCT+GGG + chr7_3:75044402-75044421 None:intergenic 30.0%
TTTAATAGATTGAGTGAGTC+TGG + chr7_3:75044403-75044422 None:intergenic 30.0%
! AACTATGAATTGTTTGTTGG+TGG + chr7_3:75044428-75044447 None:intergenic 30.0%
ATTCATAGTTGCCTTGAATA+AGG - chr7_3:75044438-75044457 Msa1124010:intron 30.0%
AACAACAAAACTATTGGAGT+TGG - chr7_3:75044621-75044640 Msa1124010:intron 30.0%
GACTTACATGAAAAGACTTA+AGG - chr7_3:75045136-75045155 Msa1124010:CDS 30.0%
TTACATGAAAAGACTTAAGG+AGG - chr7_3:75045139-75045158 Msa1124010:CDS 30.0%
ACATCTACTCACAAAACAAT+GGG + chr7_3:75045239-75045258 None:intergenic 30.0%
! TTGTTTTCTCTGCATTAGAT+TGG - chr7_3:75045337-75045356 Msa1124010:CDS 30.0%
! TGTTTTCTCTGCATTAGATT+GGG - chr7_3:75045338-75045357 Msa1124010:CDS 30.0%
ACACAAAGCATAAAACAGAA+TGG + chr7_3:75045478-75045497 None:intergenic 30.0%
! TGCAATGCACAAAATTTGTT+TGG - chr7_3:75045563-75045582 Msa1124010:intron 30.0%
! TTTAAGGTTATTCTCAATGG+AGG + chr7_3:75045681-75045700 None:intergenic 30.0%
CATTGAGAATAACCTTAAAC+CGG - chr7_3:75045682-75045701 Msa1124010:intron 30.0%
ATCTCAAATTCCCTTTATTG+GGG + chr7_3:75045800-75045819 None:intergenic 30.0%
CGGCTACAAATAACTTAAAA+CGG + chr7_3:75045892-75045911 None:intergenic 30.0%
TCTTAATGTTCTGTTCAACT+TGG - chr7_3:75046049-75046068 Msa1124010:CDS 30.0%
! TGCTTTGAATGTTTCTTTCC+AGG - chr7_3:75044115-75044134 Msa1124010:CDS 35.0%
GGCAACTATGAATTGTTTGT+TGG + chr7_3:75044431-75044450 None:intergenic 35.0%
AATCATGTCGACCTTATTCA+AGG + chr7_3:75044452-75044471 None:intergenic 35.0%
TGCATCAATGCTTTACGAAA+TGG + chr7_3:75044502-75044521 None:intergenic 35.0%
TCAAGATGACTTTCATACCA+AGG - chr7_3:75044537-75044556 Msa1124010:CDS 35.0%
TTGGAGTCCAAATCATCATT+AGG + chr7_3:75044804-75044823 None:intergenic 35.0%
TGCATGTAACTTTCACTCAT+TGG - chr7_3:75044872-75044891 Msa1124010:intron 35.0%
!! CTAACAGGAATATTGACTTG+TGG + chr7_3:75044924-75044943 None:intergenic 35.0%
AAAGAAAGATTCTGCTGATG+AGG - chr7_3:75045166-75045185 Msa1124010:CDS 35.0%
GACATCTACTCACAAAACAA+TGG + chr7_3:75045240-75045259 None:intergenic 35.0%
ATACCTTCAAAATGCCTTGA+AGG + chr7_3:75045262-75045281 None:intergenic 35.0%
! GTTTTCTCTGCATTAGATTG+GGG - chr7_3:75045339-75045358 Msa1124010:CDS 35.0%
!! AATTCTATATTTTCGGGCCT+TGG - chr7_3:75045416-75045435 Msa1124010:CDS 35.0%
!! ATTCTATATTTTCGGGCCTT+GGG - chr7_3:75045417-75045436 Msa1124010:CDS 35.0%
TGTGTTCTTATGTATCAGAC+TGG - chr7_3:75045493-75045512 Msa1124010:intron 35.0%
ATATTGTCTGCTTGACAGAT+TGG - chr7_3:75045605-75045624 Msa1124010:intron 35.0%
! CGGTTTAAGGTTATTCTCAA+TGG + chr7_3:75045684-75045703 None:intergenic 35.0%
TTTGTGAGTTCAGAGAAGTT+TGG + chr7_3:75045771-75045790 None:intergenic 35.0%
CATCACAATCATAGGCATAA+AGG + chr7_3:75045838-75045857 None:intergenic 35.0%
CACGTGTAAATCAGTGAAAT+TGG + chr7_3:75045966-75045985 None:intergenic 35.0%
AGAGAAATAAAACTGTGCAG+AGG - chr7_3:75046014-75046033 Msa1124010:CDS 35.0%
!!! AAATGTTTGGGAGGCATTTT+TGG - chr7_3:75046110-75046129 Msa1124010:intron 35.0%
TAATGACTTACCCGGTATTA+TGG + chr7_3:75046156-75046175 None:intergenic 35.0%
GTGATATGATTGAGGATGAA+TGG - chr7_3:75046274-75046293 Msa1124010:CDS 35.0%
!! ATGGAAGTTGGTGAAGAAAT+TGG - chr7_3:75046293-75046312 Msa1124010:CDS 35.0%
! TGCTTTGAATGTTTCTTTCC+AGG - chr7_3:75044115-75044134 Msa1124010:CDS 35.0%
GGCAACTATGAATTGTTTGT+TGG + chr7_3:75044431-75044450 None:intergenic 35.0%
AATCATGTCGACCTTATTCA+AGG + chr7_3:75044452-75044471 None:intergenic 35.0%
TGCATCAATGCTTTACGAAA+TGG + chr7_3:75044502-75044521 None:intergenic 35.0%
TCAAGATGACTTTCATACCA+AGG - chr7_3:75044537-75044556 Msa1124010:CDS 35.0%
TTGGAGTCCAAATCATCATT+AGG + chr7_3:75044804-75044823 None:intergenic 35.0%
TGCATGTAACTTTCACTCAT+TGG - chr7_3:75044872-75044891 Msa1124010:intron 35.0%
!! CTAACAGGAATATTGACTTG+TGG + chr7_3:75044924-75044943 None:intergenic 35.0%
AAAGAAAGATTCTGCTGATG+AGG - chr7_3:75045166-75045185 Msa1124010:CDS 35.0%
GACATCTACTCACAAAACAA+TGG + chr7_3:75045240-75045259 None:intergenic 35.0%
ATACCTTCAAAATGCCTTGA+AGG + chr7_3:75045262-75045281 None:intergenic 35.0%
! GTTTTCTCTGCATTAGATTG+GGG - chr7_3:75045339-75045358 Msa1124010:CDS 35.0%
!! AATTCTATATTTTCGGGCCT+TGG - chr7_3:75045416-75045435 Msa1124010:CDS 35.0%
!! ATTCTATATTTTCGGGCCTT+GGG - chr7_3:75045417-75045436 Msa1124010:CDS 35.0%
TGTGTTCTTATGTATCAGAC+TGG - chr7_3:75045493-75045512 Msa1124010:intron 35.0%
ATATTGTCTGCTTGACAGAT+TGG - chr7_3:75045605-75045624 Msa1124010:intron 35.0%
! CGGTTTAAGGTTATTCTCAA+TGG + chr7_3:75045684-75045703 None:intergenic 35.0%
TTTGTGAGTTCAGAGAAGTT+TGG + chr7_3:75045771-75045790 None:intergenic 35.0%
CATCACAATCATAGGCATAA+AGG + chr7_3:75045838-75045857 None:intergenic 35.0%
CACGTGTAAATCAGTGAAAT+TGG + chr7_3:75045966-75045985 None:intergenic 35.0%
AGAGAAATAAAACTGTGCAG+AGG - chr7_3:75046014-75046033 Msa1124010:CDS 35.0%
!!! AAATGTTTGGGAGGCATTTT+TGG - chr7_3:75046110-75046129 Msa1124010:intron 35.0%
TAATGACTTACCCGGTATTA+TGG + chr7_3:75046156-75046175 None:intergenic 35.0%
GTGATATGATTGAGGATGAA+TGG - chr7_3:75046274-75046293 Msa1124010:CDS 35.0%
!! ATGGAAGTTGGTGAAGAAAT+TGG - chr7_3:75046293-75046312 Msa1124010:CDS 35.0%
CTTCTTCTTCGATGCGATTA+GGG + chr7_3:75044006-75044025 None:intergenic 40.0%
TCTTCTTCTTCGATGCGATT+AGG + chr7_3:75044007-75044026 None:intergenic 40.0%
ACTGGCAAAACCATGCTTAT+CGG - chr7_3:75044208-75044227 Msa1124010:intron 40.0%
TCGAATACAACCGATAAGCA+TGG + chr7_3:75044221-75044240 None:intergenic 40.0%
! ATGCTTATCGGTTGTATTCG+AGG - chr7_3:75044220-75044239 Msa1124010:intron 40.0%
CGTGTTGAGGATGGAATATA+GGG + chr7_3:75044259-75044278 None:intergenic 40.0%
TCGTGTTGAGGATGGAATAT+AGG + chr7_3:75044260-75044279 None:intergenic 40.0%
!! TTGTTGATAACCCACCAATC+AGG - chr7_3:75044314-75044333 Msa1124010:intron 40.0%
!! TGTTGATAACCCACCAATCA+GGG - chr7_3:75044315-75044334 Msa1124010:intron 40.0%
CATAGATGTAAACCCCTGAT+TGG + chr7_3:75044331-75044350 None:intergenic 40.0%
! GCTTTACGAAATGGAGCATT+GGG + chr7_3:75044493-75044512 None:intergenic 40.0%
TGCTTTACGAAATGGAGCAT+TGG + chr7_3:75044494-75044513 None:intergenic 40.0%
CTTTCATACCAAGGTCTCTA+AGG - chr7_3:75044546-75044565 Msa1124010:CDS 40.0%
AGAAACAACCTTAGAGACCT+TGG + chr7_3:75044557-75044576 None:intergenic 40.0%
TTCTCAGTTCAAGACACACA+CGG - chr7_3:75044573-75044592 Msa1124010:CDS 40.0%
TCACCACTTATTGCACTTGT+GGG + chr7_3:75044666-75044685 None:intergenic 40.0%
TTCACCACTTATTGCACTTG+TGG + chr7_3:75044667-75044686 None:intergenic 40.0%
ACAAGTGCAATAAGTGGTGA+AGG - chr7_3:75044666-75044685 Msa1124010:intron 40.0%
AATAAGTGGTGAAGGAATCC+CGG - chr7_3:75044674-75044693 Msa1124010:intron 40.0%
GGTCAAGCCTAATGATGATT+TGG - chr7_3:75044794-75044813 Msa1124010:intron 40.0%
AATCCTGCTCAAGTTTGACT+TGG + chr7_3:75044823-75044842 None:intergenic 40.0%
CCTATGTTTACAGCACTAAC+AGG + chr7_3:75044939-75044958 None:intergenic 40.0%
CCTGTTAGTGCTGTAAACAT+AGG - chr7_3:75044936-75044955 Msa1124010:intron 40.0%
CATAGGTCCTGTACATAAGA+AGG - chr7_3:75044953-75044972 Msa1124010:intron 40.0%
TCCTGTACATAAGAAGGATG+TGG - chr7_3:75044959-75044978 Msa1124010:intron 40.0%
TCCACATCCTTCTTATGTAC+AGG + chr7_3:75044963-75044982 None:intergenic 40.0%
ACATAAGAAGGATGTGGAGA+AGG - chr7_3:75044965-75044984 Msa1124010:intron 40.0%
TTGGCAACTTGCACACAAAT+TGG - chr7_3:75045061-75045080 Msa1124010:CDS 40.0%
TGGCAACTTGCACACAAATT+GGG - chr7_3:75045062-75045081 Msa1124010:CDS 40.0%
TTGTGAGTAGATGTCCTTCA+AGG - chr7_3:75045245-75045264 Msa1124010:CDS 40.0%
!! TGTCCTTCAAGGCATTTTGA+AGG - chr7_3:75045256-75045275 Msa1124010:CDS 40.0%
! GTTGCATCTGTATTTGAGAC+AGG - chr7_3:75045386-75045405 Msa1124010:CDS 40.0%
TAGGTTAGGTTAACAGTAGG+AGG + chr7_3:75045452-75045471 None:intergenic 40.0%
TCCTACTGTTAACCTAACCT+AGG - chr7_3:75045451-75045470 Msa1124010:CDS 40.0%
ACCTAGGTTAGGTTAACAGT+AGG + chr7_3:75045455-75045474 None:intergenic 40.0%
AAACAGAATGGACCTAGGTT+AGG + chr7_3:75045466-75045485 None:intergenic 40.0%
GCATAAAACAGAATGGACCT+AGG + chr7_3:75045471-75045490 None:intergenic 40.0%
ACCAAAACAGACATCCAAGA+CGG + chr7_3:75045520-75045539 None:intergenic 40.0%
!!! TGTCTGTTTTGGTCGTAATG+AGG - chr7_3:75045527-75045546 Msa1124010:intron 40.0%
!!! GTCTGTTTTGGTCGTAATGA+GGG - chr7_3:75045528-75045547 Msa1124010:intron 40.0%
TATTCTCAATGGAGGCAATG+CGG + chr7_3:75045673-75045692 None:intergenic 40.0%
!! CCTTAAACCGGTTGATAAAG+CGG - chr7_3:75045694-75045713 Msa1124010:CDS 40.0%
ACGTGCTCGATATTTAGAAG+TGG - chr7_3:75045981-75046000 Msa1124010:CDS 40.0%
!! CAACTTGGTTTGCAGATTGT+TGG - chr7_3:75046064-75046083 Msa1124010:CDS 40.0%
AGGAACGGCAGAAAATGTTT+GGG - chr7_3:75046098-75046117 Msa1124010:CDS 40.0%
GAGCTTGTAAGCCATAATAC+CGG - chr7_3:75046142-75046161 Msa1124010:intron 40.0%
AGCTTGTAAGCCATAATACC+GGG - chr7_3:75046143-75046162 Msa1124010:intron 40.0%
! GATCTAGGGTGATATGATTG+AGG - chr7_3:75046266-75046285 Msa1124010:CDS 40.0%
GATTGAGGATGAATGGAAGT+TGG - chr7_3:75046281-75046300 Msa1124010:CDS 40.0%
CTTCTTCTTCGATGCGATTA+GGG + chr7_3:75044006-75044025 None:intergenic 40.0%
TCTTCTTCTTCGATGCGATT+AGG + chr7_3:75044007-75044026 None:intergenic 40.0%
ACTGGCAAAACCATGCTTAT+CGG - chr7_3:75044208-75044227 Msa1124010:intron 40.0%
TCGAATACAACCGATAAGCA+TGG + chr7_3:75044221-75044240 None:intergenic 40.0%
! ATGCTTATCGGTTGTATTCG+AGG - chr7_3:75044220-75044239 Msa1124010:intron 40.0%
CGTGTTGAGGATGGAATATA+GGG + chr7_3:75044259-75044278 None:intergenic 40.0%
TCGTGTTGAGGATGGAATAT+AGG + chr7_3:75044260-75044279 None:intergenic 40.0%
!! TTGTTGATAACCCACCAATC+AGG - chr7_3:75044314-75044333 Msa1124010:intron 40.0%
!! TGTTGATAACCCACCAATCA+GGG - chr7_3:75044315-75044334 Msa1124010:intron 40.0%
CATAGATGTAAACCCCTGAT+TGG + chr7_3:75044331-75044350 None:intergenic 40.0%
! GCTTTACGAAATGGAGCATT+GGG + chr7_3:75044493-75044512 None:intergenic 40.0%
TGCTTTACGAAATGGAGCAT+TGG + chr7_3:75044494-75044513 None:intergenic 40.0%
CTTTCATACCAAGGTCTCTA+AGG - chr7_3:75044546-75044565 Msa1124010:CDS 40.0%
AGAAACAACCTTAGAGACCT+TGG + chr7_3:75044557-75044576 None:intergenic 40.0%
TTCTCAGTTCAAGACACACA+CGG - chr7_3:75044573-75044592 Msa1124010:CDS 40.0%
TCACCACTTATTGCACTTGT+GGG + chr7_3:75044666-75044685 None:intergenic 40.0%
TTCACCACTTATTGCACTTG+TGG + chr7_3:75044667-75044686 None:intergenic 40.0%
ACAAGTGCAATAAGTGGTGA+AGG - chr7_3:75044666-75044685 Msa1124010:intron 40.0%
AATAAGTGGTGAAGGAATCC+CGG - chr7_3:75044674-75044693 Msa1124010:intron 40.0%
GGTCAAGCCTAATGATGATT+TGG - chr7_3:75044794-75044813 Msa1124010:intron 40.0%
AATCCTGCTCAAGTTTGACT+TGG + chr7_3:75044823-75044842 None:intergenic 40.0%
CCTATGTTTACAGCACTAAC+AGG + chr7_3:75044939-75044958 None:intergenic 40.0%
CCTGTTAGTGCTGTAAACAT+AGG - chr7_3:75044936-75044955 Msa1124010:intron 40.0%
CATAGGTCCTGTACATAAGA+AGG - chr7_3:75044953-75044972 Msa1124010:intron 40.0%
TCCTGTACATAAGAAGGATG+TGG - chr7_3:75044959-75044978 Msa1124010:intron 40.0%
TCCACATCCTTCTTATGTAC+AGG + chr7_3:75044963-75044982 None:intergenic 40.0%
ACATAAGAAGGATGTGGAGA+AGG - chr7_3:75044965-75044984 Msa1124010:intron 40.0%
TTGGCAACTTGCACACAAAT+TGG - chr7_3:75045061-75045080 Msa1124010:CDS 40.0%
TGGCAACTTGCACACAAATT+GGG - chr7_3:75045062-75045081 Msa1124010:CDS 40.0%
TTGTGAGTAGATGTCCTTCA+AGG - chr7_3:75045245-75045264 Msa1124010:CDS 40.0%
!! TGTCCTTCAAGGCATTTTGA+AGG - chr7_3:75045256-75045275 Msa1124010:CDS 40.0%
! GTTGCATCTGTATTTGAGAC+AGG - chr7_3:75045386-75045405 Msa1124010:CDS 40.0%
TAGGTTAGGTTAACAGTAGG+AGG + chr7_3:75045452-75045471 None:intergenic 40.0%
TCCTACTGTTAACCTAACCT+AGG - chr7_3:75045451-75045470 Msa1124010:CDS 40.0%
ACCTAGGTTAGGTTAACAGT+AGG + chr7_3:75045455-75045474 None:intergenic 40.0%
AAACAGAATGGACCTAGGTT+AGG + chr7_3:75045466-75045485 None:intergenic 40.0%
GCATAAAACAGAATGGACCT+AGG + chr7_3:75045471-75045490 None:intergenic 40.0%
ACCAAAACAGACATCCAAGA+CGG + chr7_3:75045520-75045539 None:intergenic 40.0%
!!! TGTCTGTTTTGGTCGTAATG+AGG - chr7_3:75045527-75045546 Msa1124010:intron 40.0%
!!! GTCTGTTTTGGTCGTAATGA+GGG - chr7_3:75045528-75045547 Msa1124010:intron 40.0%
TATTCTCAATGGAGGCAATG+CGG + chr7_3:75045673-75045692 None:intergenic 40.0%
!! CCTTAAACCGGTTGATAAAG+CGG - chr7_3:75045694-75045713 Msa1124010:CDS 40.0%
ACGTGCTCGATATTTAGAAG+TGG - chr7_3:75045981-75046000 Msa1124010:CDS 40.0%
!! CAACTTGGTTTGCAGATTGT+TGG - chr7_3:75046064-75046083 Msa1124010:CDS 40.0%
AGGAACGGCAGAAAATGTTT+GGG - chr7_3:75046098-75046117 Msa1124010:CDS 40.0%
GAGCTTGTAAGCCATAATAC+CGG - chr7_3:75046142-75046161 Msa1124010:intron 40.0%
AGCTTGTAAGCCATAATACC+GGG - chr7_3:75046143-75046162 Msa1124010:intron 40.0%
! GATCTAGGGTGATATGATTG+AGG - chr7_3:75046266-75046285 Msa1124010:CDS 40.0%
GATTGAGGATGAATGGAAGT+TGG - chr7_3:75046281-75046300 Msa1124010:CDS 40.0%
GAAACAGGGTTCCGATAACT+AGG + chr7_3:75044166-75044185 None:intergenic 45.0%
AACCCTGTTTCCTGCATCAT+AGG - chr7_3:75044175-75044194 Msa1124010:intron 45.0%
CACCTATGATGCAGGAAACA+GGG + chr7_3:75044180-75044199 None:intergenic 45.0%
TCACCTATGATGCAGGAAAC+AGG + chr7_3:75044181-75044200 None:intergenic 45.0%
ATCATAGGTGATGCGTACAC+TGG - chr7_3:75044190-75044209 Msa1124010:intron 45.0%
TGATGCTGAAAGACCTATGC+TGG - chr7_3:75044291-75044310 Msa1124010:intron 45.0%
GGGTTATCAACAACCAGCAT+AGG + chr7_3:75044307-75044326 None:intergenic 45.0%
!! GTTGATAACCCACCAATCAG+GGG - chr7_3:75044316-75044335 Msa1124010:intron 45.0%
GATGTAAACCCCTGATTGGT+GGG + chr7_3:75044327-75044346 None:intergenic 45.0%
AGATGTAAACCCCTGATTGG+TGG + chr7_3:75044328-75044347 None:intergenic 45.0%
AGGTCGACATGATTCATGAC+TGG - chr7_3:75044458-75044477 Msa1124010:intron 45.0%
!! AGCATTGATGCAGCAGTCTA+AGG - chr7_3:75044510-75044529 Msa1124010:intron 45.0%
! GCATTGATGCAGCAGTCTAA+GGG - chr7_3:75044511-75044530 Msa1124010:intron 45.0%
TCTCAGTTCAAGACACACAC+GGG - chr7_3:75044574-75044593 Msa1124010:CDS 45.0%
GAGATTTATTCGTCCACCTG+TGG - chr7_3:75044773-75044792 Msa1124010:intron 45.0%
TCATCATTAGGCTTGACCAC+AGG + chr7_3:75044792-75044811 None:intergenic 45.0%
ACTCCAAGTCAAACTTGAGC+AGG - chr7_3:75044817-75044836 Msa1124010:intron 45.0%
GCAAACACAACAGCATACTC+TGG + chr7_3:75045014-75045033 None:intergenic 45.0%
TGTGTTTGCGTTTCCTGTCA+TGG - chr7_3:75045025-75045044 Msa1124010:CDS 45.0%
TGGCATGATCTTGAGAATGC+AGG + chr7_3:75045192-75045211 None:intergenic 45.0%
TAGGAGGATAAACGTACCCA+AGG + chr7_3:75045436-75045455 None:intergenic 45.0%
! TCCGTCTTGGATGTCTGTTT+TGG - chr7_3:75045516-75045535 Msa1124010:intron 45.0%
! CCGCTTTATCAACCGGTTTA+AGG + chr7_3:75045697-75045716 None:intergenic 45.0%
CCTTTCTCCGCTTTATCAAC+CGG + chr7_3:75045704-75045723 None:intergenic 45.0%
!! CGGTTGATAAAGCGGAGAAA+GGG - chr7_3:75045702-75045721 Msa1124010:CDS 45.0%
AGGGCAGCAAGTAGTCATTA+AGG - chr7_3:75045721-75045740 Msa1124010:CDS 45.0%
GATTGTTGGCAGCAATTCTG+AGG - chr7_3:75046078-75046097 Msa1124010:CDS 45.0%
! TTGGCAGCAATTCTGAGGAA+CGG - chr7_3:75046083-75046102 Msa1124010:CDS 45.0%
GAGGAACGGCAGAAAATGTT+TGG - chr7_3:75046097-75046116 Msa1124010:CDS 45.0%
AACGGCAGAAAATGTTTGGG+AGG - chr7_3:75046101-75046120 Msa1124010:intron 45.0%
GAAACAGGGTTCCGATAACT+AGG + chr7_3:75044166-75044185 None:intergenic 45.0%
AACCCTGTTTCCTGCATCAT+AGG - chr7_3:75044175-75044194 Msa1124010:intron 45.0%
CACCTATGATGCAGGAAACA+GGG + chr7_3:75044180-75044199 None:intergenic 45.0%
TCACCTATGATGCAGGAAAC+AGG + chr7_3:75044181-75044200 None:intergenic 45.0%
ATCATAGGTGATGCGTACAC+TGG - chr7_3:75044190-75044209 Msa1124010:intron 45.0%
TGATGCTGAAAGACCTATGC+TGG - chr7_3:75044291-75044310 Msa1124010:intron 45.0%
GGGTTATCAACAACCAGCAT+AGG + chr7_3:75044307-75044326 None:intergenic 45.0%
!! GTTGATAACCCACCAATCAG+GGG - chr7_3:75044316-75044335 Msa1124010:intron 45.0%
GATGTAAACCCCTGATTGGT+GGG + chr7_3:75044327-75044346 None:intergenic 45.0%
AGATGTAAACCCCTGATTGG+TGG + chr7_3:75044328-75044347 None:intergenic 45.0%
AGGTCGACATGATTCATGAC+TGG - chr7_3:75044458-75044477 Msa1124010:intron 45.0%
!! AGCATTGATGCAGCAGTCTA+AGG - chr7_3:75044510-75044529 Msa1124010:intron 45.0%
! GCATTGATGCAGCAGTCTAA+GGG - chr7_3:75044511-75044530 Msa1124010:intron 45.0%
TCTCAGTTCAAGACACACAC+GGG - chr7_3:75044574-75044593 Msa1124010:CDS 45.0%
GAGATTTATTCGTCCACCTG+TGG - chr7_3:75044773-75044792 Msa1124010:intron 45.0%
TCATCATTAGGCTTGACCAC+AGG + chr7_3:75044792-75044811 None:intergenic 45.0%
ACTCCAAGTCAAACTTGAGC+AGG - chr7_3:75044817-75044836 Msa1124010:intron 45.0%
GCAAACACAACAGCATACTC+TGG + chr7_3:75045014-75045033 None:intergenic 45.0%
TGTGTTTGCGTTTCCTGTCA+TGG - chr7_3:75045025-75045044 Msa1124010:CDS 45.0%
TGGCATGATCTTGAGAATGC+AGG + chr7_3:75045192-75045211 None:intergenic 45.0%
TAGGAGGATAAACGTACCCA+AGG + chr7_3:75045436-75045455 None:intergenic 45.0%
! TCCGTCTTGGATGTCTGTTT+TGG - chr7_3:75045516-75045535 Msa1124010:intron 45.0%
! CCGCTTTATCAACCGGTTTA+AGG + chr7_3:75045697-75045716 None:intergenic 45.0%
CCTTTCTCCGCTTTATCAAC+CGG + chr7_3:75045704-75045723 None:intergenic 45.0%
!! CGGTTGATAAAGCGGAGAAA+GGG - chr7_3:75045702-75045721 Msa1124010:CDS 45.0%
AGGGCAGCAAGTAGTCATTA+AGG - chr7_3:75045721-75045740 Msa1124010:CDS 45.0%
GATTGTTGGCAGCAATTCTG+AGG - chr7_3:75046078-75046097 Msa1124010:CDS 45.0%
! TTGGCAGCAATTCTGAGGAA+CGG - chr7_3:75046083-75046102 Msa1124010:CDS 45.0%
GAGGAACGGCAGAAAATGTT+TGG - chr7_3:75046097-75046116 Msa1124010:CDS 45.0%
AACGGCAGAAAATGTTTGGG+AGG - chr7_3:75046101-75046120 Msa1124010:intron 45.0%
GATCGGACCCTTCTTGTGTT+TGG + chr7_3:75043970-75043989 None:intergenic 50.0%
ACAGGGTTCCGATAACTAGG+CGG + chr7_3:75044163-75044182 None:intergenic 50.0%
GTACGCATCACCTATGATGC+AGG + chr7_3:75044188-75044207 None:intergenic 50.0%
GCAGGAAATCGTGTTGAGGA+TGG + chr7_3:75044268-75044287 None:intergenic 50.0%
TCCTCAACACGATTTCCTGC+TGG - chr7_3:75044268-75044287 Msa1124010:intron 50.0%
ACCAGCAGGAAATCGTGTTG+AGG + chr7_3:75044272-75044291 None:intergenic 50.0%
GTGCCCACAAGTGCAATAAG+TGG - chr7_3:75044660-75044679 Msa1124010:intron 50.0%
!! CTGCACAGCTTGTTGACTGT+AGG + chr7_3:75044754-75044773 None:intergenic 50.0%
TCATTAGGCTTGACCACAGG+TGG + chr7_3:75044789-75044808 None:intergenic 50.0%
AGGATTGACACGACTCCTGA+GGG - chr7_3:75044837-75044856 Msa1124010:intron 50.0%
!! TCATGGTCACCTCTGAAGCT+TGG - chr7_3:75045042-75045061 Msa1124010:CDS 50.0%
TGCAAGTTGCCAAGCTTCAG+AGG + chr7_3:75045054-75045073 None:intergenic 50.0%
! TGTATCAGACTGGTCCGTCT+TGG - chr7_3:75045503-75045522 Msa1124010:intron 50.0%
!! CCGGTTGATAAAGCGGAGAA+AGG - chr7_3:75045701-75045720 Msa1124010:CDS 50.0%
GATCGGACCCTTCTTGTGTT+TGG + chr7_3:75043970-75043989 None:intergenic 50.0%
ACAGGGTTCCGATAACTAGG+CGG + chr7_3:75044163-75044182 None:intergenic 50.0%
GTACGCATCACCTATGATGC+AGG + chr7_3:75044188-75044207 None:intergenic 50.0%
GCAGGAAATCGTGTTGAGGA+TGG + chr7_3:75044268-75044287 None:intergenic 50.0%
TCCTCAACACGATTTCCTGC+TGG - chr7_3:75044268-75044287 Msa1124010:intron 50.0%
ACCAGCAGGAAATCGTGTTG+AGG + chr7_3:75044272-75044291 None:intergenic 50.0%
GTGCCCACAAGTGCAATAAG+TGG - chr7_3:75044660-75044679 Msa1124010:intron 50.0%
!! CTGCACAGCTTGTTGACTGT+AGG + chr7_3:75044754-75044773 None:intergenic 50.0%
TCATTAGGCTTGACCACAGG+TGG + chr7_3:75044789-75044808 None:intergenic 50.0%
AGGATTGACACGACTCCTGA+GGG - chr7_3:75044837-75044856 Msa1124010:intron 50.0%
!! TCATGGTCACCTCTGAAGCT+TGG - chr7_3:75045042-75045061 Msa1124010:CDS 50.0%
TGCAAGTTGCCAAGCTTCAG+AGG + chr7_3:75045054-75045073 None:intergenic 50.0%
! TGTATCAGACTGGTCCGTCT+TGG - chr7_3:75045503-75045522 Msa1124010:intron 50.0%
!! CCGGTTGATAAAGCGGAGAA+AGG - chr7_3:75045701-75045720 Msa1124010:CDS 50.0%
GGCGGCTTAACAGTATCACC+TGG + chr7_3:75044136-75044155 None:intergenic 55.0%
GGTCTTTCAGCATCACCAGC+AGG + chr7_3:75044286-75044305 None:intergenic 55.0%
CAGGATTGACACGACTCCTG+AGG - chr7_3:75044836-75044855 Msa1124010:intron 55.0%
GGATTGACACGACTCCTGAG+GGG - chr7_3:75044838-75044857 Msa1124010:intron 55.0%
GATTGACACGACTCCTGAGG+GGG - chr7_3:75044839-75044858 Msa1124010:intron 55.0%
! GCATTGACACAAACCCCCTC+AGG + chr7_3:75044855-75044874 None:intergenic 55.0%
GCTTCAGAGGTGACCATGAC+AGG + chr7_3:75045041-75045060 None:intergenic 55.0%
GGCGGCTTAACAGTATCACC+TGG + chr7_3:75044136-75044155 None:intergenic 55.0%
GGTCTTTCAGCATCACCAGC+AGG + chr7_3:75044286-75044305 None:intergenic 55.0%
CAGGATTGACACGACTCCTG+AGG - chr7_3:75044836-75044855 Msa1124010:intron 55.0%
GGATTGACACGACTCCTGAG+GGG - chr7_3:75044838-75044857 Msa1124010:intron 55.0%
GATTGACACGACTCCTGAGG+GGG - chr7_3:75044839-75044858 Msa1124010:intron 55.0%
! GCATTGACACAAACCCCCTC+AGG + chr7_3:75044855-75044874 None:intergenic 55.0%
GCTTCAGAGGTGACCATGAC+AGG + chr7_3:75045041-75045060 None:intergenic 55.0%
TTCCGATAACTAGGCGGCGG+CGG + chr7_3:75044157-75044176 None:intergenic 60.0%
GGGTTCCGATAACTAGGCGG+CGG + chr7_3:75044160-75044179 None:intergenic 60.0%
TTCCGATAACTAGGCGGCGG+CGG + chr7_3:75044157-75044176 None:intergenic 60.0%
GGGTTCCGATAACTAGGCGG+CGG + chr7_3:75044160-75044179 None:intergenic 60.0%
CGATAACTAGGCGGCGGCGG+CGG + chr7_3:75044154-75044173 None:intergenic 70.0%
CGCCGCCGCCGCCTAGTTAT+CGG - chr7_3:75044152-75044171 Msa1124010:CDS 70.0%
CGATAACTAGGCGGCGGCGG+CGG + chr7_3:75044154-75044173 None:intergenic 70.0%
CGCCGCCGCCGCCTAGTTAT+CGG - chr7_3:75044152-75044171 Msa1124010:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 75043930 75046326 75043930 ID=Msa1124010;Name=Msa1124010
chr7_3 mRNA 75043930 75046326 75043930 ID=Msa1124010-mRNA-1;Parent=Msa1124010;Name=Msa1124010-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.4|0.16|0.83|1|0.83|6|0|418
chr7_3 exon 75046215 75046326 75046215 ID=Msa1124010-mRNA-1:exon:20147;Parent=Msa1124010-mRNA-1
chr7_3 exon 75045689 75046119 75045689 ID=Msa1124010-mRNA-1:exon:20146;Parent=Msa1124010-mRNA-1
chr7_3 exon 75045015 75045482 75045015 ID=Msa1124010-mRNA-1:exon:20145;Parent=Msa1124010-mRNA-1
chr7_3 exon 75044514 75044633 75044514 ID=Msa1124010-mRNA-1:exon:20144;Parent=Msa1124010-mRNA-1
chr7_3 exon 75044109 75044177 75044109 ID=Msa1124010-mRNA-1:exon:20143;Parent=Msa1124010-mRNA-1
chr7_3 exon 75043930 75043983 75043930 ID=Msa1124010-mRNA-1:exon:20142;Parent=Msa1124010-mRNA-1
chr7_3 CDS 75046215 75046326 75046215 ID=Msa1124010-mRNA-1:cds;Parent=Msa1124010-mRNA-1
chr7_3 CDS 75045689 75046119 75045689 ID=Msa1124010-mRNA-1:cds;Parent=Msa1124010-mRNA-1
chr7_3 CDS 75045015 75045482 75045015 ID=Msa1124010-mRNA-1:cds;Parent=Msa1124010-mRNA-1
chr7_3 CDS 75044514 75044633 75044514 ID=Msa1124010-mRNA-1:cds;Parent=Msa1124010-mRNA-1
chr7_3 CDS 75044109 75044177 75044109 ID=Msa1124010-mRNA-1:cds;Parent=Msa1124010-mRNA-1
chr7_3 CDS 75043930 75043983 75043930 ID=Msa1124010-mRNA-1:cds;Parent=Msa1124010-mRNA-1
Gene Sequence

>Msa1124010

ATGGAACACTATGCCATAACATTCAATTCAATTATCACCAAACACAAGAAGGGTCCGATCAAAAGAAAAGAAACCCTAATCGCATCGAAGAAGAAGAAGATGAATGAAGAAGGTGATACTGTTAAGCCGCCGCCGCCGCCTAGTTATCGGAACCCTGTTTCCTGCATCATAGGTGATGCGTACACTGGCAAAACCATGCTTATCGGTTGTATTCGAGGTAAAAACAATTTTCCCTATATTCCATCCTCAACACGATTTCCTGCTGGTGATGCTGAAAGACCTATGCTGGTTGTTGATAACCCACCAATCAGGGGTTTACATCTATGTGATATTGCTATTTTGGTTGTTGACATTATGAATGATGATGGCTTACACCCAGACTCACTCAATCTATTAAAAACCACCAACAAACAATTCATAGTTGCCTTGAATAAGGTCGACATGATTCATGACTGGAAAACATGTCCCAATGCTCCATTTCGTAAAGCATTGATGCAGCAGTCTAAGGGTGTTCAAGATGACTTTCATACCAAGGTCTCTAAGAGATTTATTCGTCCACCTGTGGTCAAGCCTAATGATGATTTGGACTCCAAGTCAAACTTGAGCAGGATTGACACGACTCCTGAGGGGGTTTGTGTCAATGCATGTAACTTTCACTCATTGGAAGCATTACTCAAGACTATGAAACATCCACAAGTCAATATTCCTGTTAGTGCTGTAAACATAGGTCCTGTACATAAGAAGGATGTGGAGAAGGTCAGTGCAATGCTTGAAAACAAACCAGAGTATGCTGTTGTGTTTGCGTTTCCTGTCATGGTCACCTCTGAAGCTTGGCAACTTGCACACAAATTGGGTGTCAAAATTTTCATCTCCGTTAAAATGCATCATCTATTTGATCAATATAAGACTTACATGAAAAGACTTAAGGAGGCGCAAAAGAAAGATTCTGCTGATGAGGCCTGCATTCTCAAGATCATGCCAAATTTTGTCTTCAACAATAAGGATCCCATTATTGGCAATCCAATTTGTATTCCTTCACAAAAGAACATTGATATTGGCCGCATTGCCTCCATTGAGAATAACCTTAAACCGGTTGATAAAGCGGAGAAAGGGCAGCAAGTAGTCATTAAGATTGTTGGCAGCAATTCTGAGGAACGGCAGAAAATGTTTGGGAGGCATTTTTGGATTGATGATGAGCTTGGTGATATGATTGAGGATGAATGGAAGTTGGTGAAGAAATTGGAGATTATTACA

Protein sequence

>Msa1124010

MEHYAITFNSIITKHKKGPIKRKETLIASKKKKMNEEGDTVKPPPPPSYRNPVSCIIGDAYTGKTMLIGCIRGKNNFPYIPSSTRFPAGDAERPMLVVDNPPIRGLHLCDIAILVVDIMNDDGLHPDSLNLLKTTNKQFIVALNKVDMIHDWKTCPNAPFRKALMQQSKGVQDDFHTKVSKRFIRPPVVKPNDDLDSKSNLSRIDTTPEGVCVNACNFHSLEALLKTMKHPQVNIPVSAVNIGPVHKKDVEKVSAMLENKPEYAVVFAFPVMVTSEAWQLAHKLGVKIFISVKMHHLFDQYKTYMKRLKEAQKKDSADEACILKIMPNFVFNNKDPIIGNPICIPSQKNIDIGRIASIENNLKPVDKAEKGQQVVIKIVGSNSEERQKMFGRHFWIDDELGDMIEDEWKLVKKLEIIT