AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169390 MtrunA17_Chr7g0263401 96.544 868 29 1 1 868 1 867 0.0 1711
Msa1169390 MtrunA17_Chr1g0181991 61.257 955 253 21 1 868 1 925 0.0 1063
Msa1169390 MtrunA17_Chr3g0133821 66.561 314 87 3 559 863 523 827 2.84e-139 434
Msa1169390 MtrunA17_Chr3g0133821 70.526 95 28 0 1 95 1 95 9.52e-40 158
Msa1169390 MtrunA17_Chr1g0153651 74.219 256 64 2 609 863 261 515 2.32e-132 405
Msa1169390 MtrunA17_Chr1g0153651 58.242 91 35 2 1 88 1 91 6.29e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169390 AT3G09560.3 53.433 932 342 21 1 868 1 904 0.0 894
Msa1169390 AT3G09560.1 53.433 932 342 21 1 868 1 904 0.0 894
Msa1169390 AT3G09560.2 53.433 932 342 21 1 868 1 904 0.0 894
Msa1169390 AT3G09560.4 53.433 932 342 21 1 868 1 904 0.0 894
Msa1169390 AT5G42870.1 58.596 413 141 7 461 867 541 929 8.68e-161 493
Msa1169390 AT5G42870.1 60.215 93 37 0 1 93 1 93 1.96e-33 139
Msa1169390 AT5G42870.2 57.627 413 140 8 461 867 541 924 3.52e-155 479
Msa1169390 AT5G42870.2 60.215 93 37 0 1 93 1 93 1.74e-33 139
Msa1169390 AT5G42870.3 57.967 364 123 7 461 818 541 880 4.99e-134 422
Msa1169390 AT5G42870.3 60.215 93 37 0 1 93 1 93 1.60e-33 139

Find 249 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAAAAGTTCCAGAATTT+TGG 0.130476 7_4:-62389336 None:intergenic
TAGCATTTCCGTTAACATTT+TGG 0.146903 7_4:-62394522 None:intergenic
GTTCTATCATAAAACATATT+TGG 0.187069 7_4:-62394410 None:intergenic
TGCTTTCAGATCTGATGTTT+TGG 0.192008 7_4:+62392294 Msa1169390:intron
ACTTCAACTCTTGGAATTAT+TGG 0.208357 7_4:+62394283 Msa1169390:CDS
TTAGGGGTTGGAATGGAATT+TGG 0.209118 7_4:-62388881 None:intergenic
TTGATGCTCATATATATTTA+TGG 0.222189 7_4:+62391550 Msa1169390:CDS
ATTAAACAATTTAGAAATAT+TGG 0.228590 7_4:+62390477 Msa1169390:CDS
ATGAATGTGGTGGGAAAATT+TGG 0.229388 7_4:+62389388 Msa1169390:CDS
TTTGTTTAAATACCTGTTTC+AGG 0.232511 7_4:-62393376 None:intergenic
CATATGTATCTTGATAATTC+CGG 0.248335 7_4:+62389613 Msa1169390:CDS
TACACGGATTCTTTGGTATT+AGG 0.256009 7_4:+62394360 Msa1169390:three_prime_UTR
TCGGCTGATTTGTCAGAATA+TGG 0.264818 7_4:+62389913 Msa1169390:CDS
CCCTGATGAGGTTGAAATTC+TGG 0.275882 7_4:+62388801 None:intergenic
GAACTTAGTTACAGTAAAAT+AGG 0.277495 7_4:+62393931 Msa1169390:CDS
AGTTTCTCTACGAGGGTTCT+AGG 0.286566 7_4:+62391419 Msa1169390:CDS
TTGTTGTGGGCTTACAAGTT+AGG 0.289505 7_4:-62388899 None:intergenic
TTGTTGTAATTGTTTGGTAT+TGG 0.311081 7_4:+62394491 Msa1169390:three_prime_UTR
AGTCCTTACTCAAACCAAAA+TGG 0.312761 7_4:-62390749 None:intergenic
TCTCAAAGATGGTCAAAATA+TGG 0.321607 7_4:+62391388 Msa1169390:CDS
CAACTAAATAGATACCTTAA+TGG 0.323620 7_4:-62392380 None:intergenic
TTGTGAAGATAAATGTTAAT+GGG 0.325693 7_4:+62389575 Msa1169390:CDS
CTTTCTTGCAGTGCTTTGAA+TGG 0.327500 7_4:-62388950 None:intergenic
AGTGTTGAAATTGATATTAC+TGG 0.332390 7_4:+62389739 Msa1169390:CDS
AAGGCCGCCCCTCTTGTTCT+TGG 0.341180 7_4:+62391041 Msa1169390:CDS
TGCCTTTAGTTGGAAAAGAT+TGG 0.344724 7_4:+62392326 Msa1169390:CDS
TGTTGTAATTGTTTGGTATT+GGG 0.346409 7_4:+62394492 Msa1169390:three_prime_UTR
AACCCATTCTATGCGGGGTT+TGG 0.347079 7_4:+62393892 Msa1169390:CDS
CTTGCTCAGCAGGATGATTA+TGG 0.349602 7_4:+62390357 Msa1169390:CDS
GATTCCGAATCTGATTTGTT+TGG 0.352962 7_4:+62391266 Msa1169390:CDS
GATCATAGCGTATCTGATTC+GGG 0.353087 7_4:+62389772 Msa1169390:CDS
GAGGTTGAAATTCTGGTATT+AGG 0.354716 7_4:+62388808 None:intergenic
TGTTGTGGGCTTACAAGTTA+GGG 0.358566 7_4:-62388898 None:intergenic
GATATCGGTAATAGTGCTTC+CGG 0.358681 7_4:+62390207 Msa1169390:CDS
GAAATAACAACAGGTCCTTT+TGG 0.363480 7_4:-62393545 None:intergenic
TTAAAAGTTCCTGACCTTCT+CGG 0.364505 7_4:-62393595 None:intergenic
AAATTCAGATAATCGATTCT+TGG 0.365245 7_4:+62389243 Msa1169390:five_prime_UTR
ATATGTATCTTGATAATTCC+GGG 0.366297 7_4:+62389614 Msa1169390:CDS
ATTTATCTTCACAATCTTCT+CGG 0.372459 7_4:-62389566 None:intergenic
GGCAATGAGGAGTTTAGTTC+TGG 0.375234 7_4:+62390105 Msa1169390:CDS
CTGAATTTCTTGATTAGTTA+CGG 0.377236 7_4:-62389228 None:intergenic
ATTGTGAAGATAAATGTTAA+TGG 0.378629 7_4:+62389574 Msa1169390:CDS
TGGTTGTTGTTGTAATTGTT+TGG 0.380204 7_4:+62394485 Msa1169390:three_prime_UTR
TGATCATAGCGTATCTGATT+CGG 0.384025 7_4:+62389771 Msa1169390:CDS
TGATGCTATCATCTCATTAG+AGG 0.387912 7_4:-62391360 None:intergenic
GTGGAAGTTGACACTGGTTC+TGG 0.389318 7_4:+62390594 Msa1169390:CDS
CCCACAGGAATTGTATCTTC+AGG 0.392472 7_4:-62391098 None:intergenic
ACATAGAACTAATCAATATC+TGG 0.393486 7_4:-62394318 None:intergenic
ATTTGTCACACGGAGGAAAC+TGG 0.394153 7_4:+62390267 Msa1169390:CDS
GATATCAGAGCTATAAATAC+TGG 0.396300 7_4:-62390190 None:intergenic
GAATTTGATATCTCACTTTG+TGG 0.396349 7_4:+62390864 Msa1169390:intron
GTTGGCTCTAATTCTGAGAT+AGG 0.398990 7_4:-62390012 None:intergenic
GTTTCCTCCGTGTGACAAAT+AGG 0.403271 7_4:-62390264 None:intergenic
GAGTTAGTAACACCTTCAAC+AGG 0.404417 7_4:-62389694 None:intergenic
GTAAGGTTTGGTAAATTTCA+AGG 0.404862 7_4:+62389529 Msa1169390:CDS
TTCTAATCCGGAGGTGATCT+TGG 0.405144 7_4:+62389960 Msa1169390:CDS
AATTCAGATAATCGATTCTT+GGG 0.407555 7_4:+62389244 Msa1169390:five_prime_UTR
TCCTACGTCTTTGCTTGAAC+AGG 0.407811 7_4:+62394166 Msa1169390:CDS
ACTTTGTGGTCACGAACTTA+AGG 0.409783 7_4:+62390878 Msa1169390:CDS
CACCACCAAAAGGGTGAAAA+GGG 0.410706 7_4:-62389447 None:intergenic
TTGCCAAACCCCGCATAGAA+TGG 0.414444 7_4:-62393895 None:intergenic
AGTATTTATAGCTCTGATAT+CGG 0.417244 7_4:+62390192 Msa1169390:CDS
ATATCGGTAATAGTGCTTCC+GGG 0.417611 7_4:+62390208 Msa1169390:CDS
ATTTGGAACCTTGATAACTA+AGG 0.420387 7_4:+62389405 Msa1169390:CDS
TAATTAATTAAAAGTTTCTT+CGG 0.424312 7_4:+62389299 Msa1169390:five_prime_UTR
AGAGAATGTTGTGGACTTGC+AGG 0.425386 7_4:+62389936 Msa1169390:CDS
TCACGAACTTAAGGCGGGTA+TGG 0.425429 7_4:+62390887 Msa1169390:CDS
AGCTGCATCATGCATGAATT+CGG 0.430128 7_4:+62390299 Msa1169390:CDS
GAGTGCCCGTGCTATTGTCC+AGG 0.431287 7_4:+62393325 Msa1169390:CDS
CTTAAATGAACTTGCTCAGC+AGG 0.432746 7_4:+62390347 Msa1169390:CDS
GGCAGGAGGACTTCAACTCT+TGG 0.432981 7_4:+62394274 Msa1169390:intron
CTCATATATATTTATGGAAG+TGG 0.433128 7_4:+62391556 Msa1169390:CDS
GCACCACCAAAAGGGTGAAA+AGG 0.435072 7_4:-62389448 None:intergenic
CCTCAATTTCACTTGGGACC+AGG 0.436900 7_4:+62390060 Msa1169390:CDS
CGAAGGTTGCCAAATAGAAA+AGG 0.437602 7_4:+62390239 Msa1169390:CDS
ATTGTATCTTCAGGGGCAAC+AGG 0.437634 7_4:-62391089 None:intergenic
GGGCAGTTCATGCCTTTAGT+TGG 0.438033 7_4:+62392316 Msa1169390:CDS
CTCCTCGCAAGCAATTTGTT+AGG 0.441589 7_4:+62391327 Msa1169390:CDS
GTGATCTTGGTTAGCGTTGA+CGG 0.444536 7_4:+62389973 Msa1169390:CDS
TTCCTGACCTTCTCGGTAAA+GGG 0.446468 7_4:-62393588 None:intergenic
ACAAGATGAAAGGTCCTCAT+TGG 0.448766 7_4:+62390386 Msa1169390:CDS
CCTGTTGTTATTTCACCTGA+TGG 0.449780 7_4:+62393554 Msa1169390:CDS
GTTCCTGACCTTCTCGGTAA+AGG 0.453457 7_4:-62393589 None:intergenic
TGCTATATGTTCGAACTACT+TGG 0.453590 7_4:+62394540 Msa1169390:three_prime_UTR
GGAGCACGCCTTGGTATGTA+AGG 0.453862 7_4:+62389512 Msa1169390:CDS
TCAGCCGAATCTTCAATTGT+TGG 0.454790 7_4:-62389898 None:intergenic
ATAAACACCCTTAGTTATCA+AGG 0.455833 7_4:-62389413 None:intergenic
GACTCAAATGTCCCTGTTGA+AGG 0.461533 7_4:+62389682 Msa1169390:CDS
GGAAAAGATTGGAACCAGAC+TGG 0.467033 7_4:+62392337 Msa1169390:CDS
ACTGGTTCTGGCATTCGTTC+CGG 0.467940 7_4:+62390606 Msa1169390:CDS
ACGCCTTGGTATGTAAGGTT+TGG 0.469262 7_4:+62389517 Msa1169390:CDS
GTGTTGCTGATTATGTTAGT+AGG 0.469363 7_4:+62390139 Msa1169390:CDS
TCAACCAACAATTGAAGATT+CGG 0.477254 7_4:+62389894 Msa1169390:CDS
GGACTTGCAGGGTTCTAATC+CGG 0.477849 7_4:+62389948 Msa1169390:CDS
AAGTCCAGCGATGATAATCC+TGG 0.480068 7_4:+62391137 Msa1169390:CDS
CAACCCCACTTAGTGGGATA+AGG 0.480548 7_4:+62394460 Msa1169390:three_prime_UTR
TTGGCTCTAATTCTGAGATA+GGG 0.481968 7_4:-62390011 None:intergenic
CCACAGGAATTGTATCTTCA+GGG 0.482375 7_4:-62391097 None:intergenic
CTATTTGGCAACCTTCGAGC+TGG 0.483317 7_4:-62390233 None:intergenic
ACATCAACAGCACCACCAAA+AGG 0.484992 7_4:-62389457 None:intergenic
CACGAACTTAAGGCGGGTAT+GGG 0.485013 7_4:+62390888 Msa1169390:CDS
GCAACCTTCGAGCTGGACCC+CGG 0.485525 7_4:-62390226 None:intergenic
TGGGCTTACAAGTTAGGGGT+TGG 0.486544 7_4:-62388893 None:intergenic
GATTATAACCCATTCTATGC+GGG 0.488504 7_4:+62393886 Msa1169390:CDS
GAAAAGATTGGAACCAGACT+GGG 0.489336 7_4:+62392338 Msa1169390:CDS
ACATCAGCTGTTGAAGCATC+CGG 0.489891 7_4:-62390162 None:intergenic
AGAGCCAAACAAATCAGATT+CGG 0.494261 7_4:-62391270 None:intergenic
CGTCCAGACGAAGATGGTCC+AGG 0.496672 7_4:-62391155 None:intergenic
TTCCTGTGGGTCAAGATGAT+AGG 0.496718 7_4:+62391111 Msa1169390:CDS
CCACTTAGTGGGATAAGGCT+TGG 0.499202 7_4:+62394465 Msa1169390:three_prime_UTR
CGCCCCTCTTGTTCTTGGAG+TGG 0.499616 7_4:+62391046 Msa1169390:CDS
AATATTTATCATTAACCCTA+AGG 0.500228 7_4:+62393969 Msa1169390:CDS
AATCCTGGACCATCTTCGTC+TGG 0.500733 7_4:+62391152 Msa1169390:CDS
GCGGCTGTCCAAAATGTTAA+CGG 0.501411 7_4:+62394514 Msa1169390:three_prime_UTR
GAGTTATCTACCATGGGAAA+AGG 0.503668 7_4:+62391022 Msa1169390:CDS
TGCCAAACCCCGCATAGAAT+GGG 0.504754 7_4:-62393894 None:intergenic
TTCTTTCTTTCAGTAGTCAG+AGG 0.505355 7_4:-62389366 None:intergenic
ATTTAAAATCAGAATTTCAA+GGG 0.506367 7_4:+62390553 Msa1169390:CDS
ATGTAGCCAACCCCACTTAG+TGG 0.507195 7_4:+62394453 Msa1169390:three_prime_UTR
AGTTCCTGGTTATATAAGCC+TGG 0.510579 7_4:-62393343 None:intergenic
GAGGGTTCTAGGAACACAAC+AGG 0.510904 7_4:+62391430 Msa1169390:CDS
CCATCAGGTGAAATAACAAC+AGG 0.512658 7_4:-62393554 None:intergenic
CCTGGTCCCAAGTGAAATTG+AGG 0.512878 7_4:-62390060 None:intergenic
AATTTAAAATCAGAATTTCA+AGG 0.515613 7_4:+62390552 Msa1169390:CDS
AAAGCCTTGCCACCCCAGTC+TGG 0.517161 7_4:-62392351 None:intergenic
ATTGTTGTTCAGCAACAAGA+TGG 0.518652 7_4:+62389481 Msa1169390:CDS
AGGGACGGAAATAATCCATC+AGG 0.519561 7_4:-62393569 None:intergenic
TAGAATGGGTTATAATCAGA+AGG 0.527886 7_4:-62393880 None:intergenic
GTTGAGCCATCTCCAACCTC+AGG 0.531698 7_4:+62391293 Msa1169390:CDS
ACAAATTCCTCAATTTCACT+TGG 0.532985 7_4:+62390053 Msa1169390:CDS
TGAAGAAGTAGCACCACTGA+TGG 0.536057 7_4:-62390511 None:intergenic
CTTATCCCACTAAGTGGGGT+TGG 0.538908 7_4:-62394459 None:intergenic
ATTGTAATTTCAGATGTGGA+TGG 0.540092 7_4:+62391588 Msa1169390:CDS
TTTCACTTGGGACCAGGTGA+AGG 0.540389 7_4:+62390066 Msa1169390:CDS
TTTGGAACCTTGATAACTAA+GGG 0.543072 7_4:+62389406 Msa1169390:CDS
GACTCAAGCCTACCTGAGGT+TGG 0.546268 7_4:-62391305 None:intergenic
CCCTCTTGTTCTTGGAGTGG+CGG 0.548536 7_4:+62391049 Msa1169390:CDS
CTGGACGTAGGTGGAGACTC+TGG 0.548685 7_4:+62391171 Msa1169390:CDS
AAGACAGCTGAGCACAATAG+TGG 0.548705 7_4:+62391215 Msa1169390:CDS
AGCCTACCTGAGGTTGGAGA+TGG 0.549317 7_4:-62391299 None:intergenic
TTTCCGTCCCTTTACCGAGA+AGG 0.550428 7_4:+62393581 Msa1169390:CDS
ATGGCAATTTACAAGATGAA+AGG 0.551334 7_4:+62390376 Msa1169390:CDS
TGGTCCAGGATTATCATCGC+TGG 0.553435 7_4:-62391141 None:intergenic
CAAATTCCTCAATTTCACTT+GGG 0.554755 7_4:+62390054 Msa1169390:CDS
CCAAGCCTTATCCCACTAAG+TGG 0.555227 7_4:-62394465 None:intergenic
CATCAACAGCACCACCAAAA+GGG 0.556201 7_4:-62389456 None:intergenic
TTTGCCAGAACTTCAAAAGG+TGG 0.556741 7_4:+62389831 Msa1169390:CDS
AACCTATCATCTTGACCCAC+AGG 0.558319 7_4:-62391113 None:intergenic
GAAGGTTGCCAAATAGAAAA+GGG 0.559450 7_4:+62390240 Msa1169390:CDS
GTTGTGGGCTTACAAGTTAG+GGG 0.560528 7_4:-62388897 None:intergenic
TGCTGATTATGTTAGTAGGC+CGG 0.561183 7_4:+62390143 Msa1169390:CDS
CCATTCCACATCATTCGTAC+CGG 0.561582 7_4:-62390625 None:intergenic
CCCTGAAGATACAATTCCTG+TGG 0.563260 7_4:+62391097 Msa1169390:CDS
TCTTTCTTTCAGTAGTCAGA+GGG 0.563942 7_4:-62389365 None:intergenic
AACATTCAGTTTCTCTACGA+GGG 0.564099 7_4:+62391412 Msa1169390:CDS
CAAGCCTTATCCCACTAAGT+GGG 0.565284 7_4:-62394464 None:intergenic
GGAACCAGACTGGGGTGGCA+AGG 0.569774 7_4:+62392347 Msa1169390:CDS
TTACAAGTTAGGGGTTGGAA+TGG 0.571871 7_4:-62388888 None:intergenic
GCATCATTGAATCTCAAAGA+TGG 0.573195 7_4:+62391377 Msa1169390:CDS
GTCCTAACAAATTGCTTGCG+AGG 0.573977 7_4:-62391329 None:intergenic
ACTAATAATTTCAAGTACAG+TGG 0.575677 7_4:-62390670 None:intergenic
TTCACTTGGGACCAGGTGAA+GGG 0.578350 7_4:+62390067 Msa1169390:CDS
ATAAAATGTCCGACCAACAT+CGG 0.579316 7_4:-62389857 None:intergenic
ACGCTAACCAAGATCACCTC+CGG 0.579858 7_4:-62389967 None:intergenic
GATGCTATCATCTCATTAGA+GGG 0.581965 7_4:-62391359 None:intergenic
TCATTGGAAGTTGCTGTCTG+AGG 0.582855 7_4:-62390714 None:intergenic
CAAAAGGTGGAATCCGATGT+TGG 0.583418 7_4:+62389844 Msa1169390:CDS
TCTGAGTTTACTTCTGAAGA+CGG 0.583454 7_4:+62389715 Msa1169390:CDS
CAGAGAGAGTTATCTACCAT+GGG 0.583701 7_4:+62391016 Msa1169390:CDS
AAATTTCAAGGTGTTCTCAA+AGG 0.584146 7_4:+62389541 Msa1169390:CDS
TAGAAATCAGTCCCTTCACC+TGG 0.588186 7_4:-62390078 None:intergenic
AAGAATTGTAATTTCAGATG+TGG 0.588816 7_4:+62391584 Msa1169390:CDS
CCGGTACGAATGATGTGGAA+TGG 0.589277 7_4:+62390625 Msa1169390:CDS
TGTTCAAGCAAAGACGTAGG+AGG 0.592284 7_4:-62394164 None:intergenic
TGGCTCTAATTCTGAGATAG+GGG 0.597023 7_4:-62390010 None:intergenic
TCAGAGAGAGTTATCTACCA+TGG 0.597194 7_4:+62391015 Msa1169390:CDS
CCGCCACTCCAAGAACAAGA+GGG 0.598140 7_4:-62391049 None:intergenic
CAGACAGCAACTTCCAATGA+GGG 0.598692 7_4:+62390717 Msa1169390:CDS
TGTACTTGAAATTATTAGTG+AGG 0.600231 7_4:+62390674 Msa1169390:CDS
TATAAGCCTGGACAATAGCA+CGG 0.602894 7_4:-62393331 None:intergenic
CACCTACGTCCAGACGAAGA+TGG 0.604562 7_4:-62391161 None:intergenic
GCCGCCACTCCAAGAACAAG+AGG 0.605405 7_4:-62391050 None:intergenic
AGTAAGTCACTTTACAAGCA+AGG 0.605483 7_4:-62394575 None:intergenic
GAAGAAGTAGCACCACTGAT+GGG 0.605725 7_4:-62390510 None:intergenic
TTTAAAATCAGAATTTCAAG+GGG 0.607929 7_4:+62390554 Msa1169390:CDS
GAGAATGTTGTGGACTTGCA+GGG 0.608699 7_4:+62389937 Msa1169390:CDS
AGTAAAATAGGAATTCCAAA+GGG 0.609251 7_4:+62393943 Msa1169390:CDS
TGTGGTCACGAACTTAAGGC+GGG 0.610181 7_4:+62390882 Msa1169390:CDS
CAGTAAAATAGGAATTCCAA+AGG 0.610652 7_4:+62393942 Msa1169390:CDS
TGTAGCCAACCCCACTTAGT+GGG 0.611984 7_4:+62394454 Msa1169390:three_prime_UTR
ATTATAACCCATTCTATGCG+GGG 0.612931 7_4:+62393887 Msa1169390:CDS
GTTCAAGATTGCTTGTCTAG+AGG 0.613173 7_4:+62393731 Msa1169390:CDS
TTACCAAACCTTACATACCA+AGG 0.615393 7_4:-62389520 None:intergenic
AGGTGGAATCCGATGTTGGT+CGG 0.615446 7_4:+62389848 Msa1169390:CDS
TTGTGGTCACGAACTTAAGG+CGG 0.615928 7_4:+62390881 Msa1169390:CDS
ATAAGCCTGGACAATAGCAC+GGG 0.616334 7_4:-62393330 None:intergenic
CACTCCAAGAACAAGAGGGG+CGG 0.618301 7_4:-62391045 None:intergenic
TGTGAAGATAAATGTTAATG+GGG 0.619954 7_4:+62389576 Msa1169390:CDS
TCGTTCCGGTACGAATGATG+TGG 0.621957 7_4:+62390620 Msa1169390:CDS
AACTAATCAATATCTGGCAT+AGG 0.627013 7_4:-62394312 None:intergenic
CAAGCAATCTTGAACTCATG+AGG 0.627073 7_4:-62393723 None:intergenic
CGCCACTCCAAGAACAAGAG+GGG 0.627600 7_4:-62391048 None:intergenic
CATCTTCGTCTGGACGTAGG+TGG 0.627651 7_4:+62391162 Msa1169390:CDS
AAAGAAAGAATGAATGTGGT+GGG 0.628462 7_4:+62389379 Msa1169390:exon
GCATCAGTGGAAGTTGACAC+TGG 0.631154 7_4:+62390588 Msa1169390:CDS
TGACCTTCTCGGTAAAGGGA+CGG 0.631465 7_4:-62393584 None:intergenic
TCAGACAGCAACTTCCAATG+AGG 0.632178 7_4:+62390716 Msa1169390:CDS
TTGTCCAGGCTTATATAACC+AGG 0.632877 7_4:+62393339 Msa1169390:CDS
ATCATAGCGTATCTGATTCG+GGG 0.633177 7_4:+62389773 Msa1169390:CDS
GACAGCAACTTCCAATGAGG+GGG 0.633635 7_4:+62390719 Msa1169390:CDS
TATCGGTAATAGTGCTTCCG+GGG 0.633679 7_4:+62390209 Msa1169390:CDS
TATGTATCTTGATAATTCCG+GGG 0.634354 7_4:+62389615 Msa1169390:CDS
GAAAGAAAGAATGAATGTGG+TGG 0.636069 7_4:+62389378 Msa1169390:exon
GGTGAGTTATCTCCCATCAG+TGG 0.640463 7_4:+62390498 Msa1169390:CDS
AGAATGGGTTATAATCAGAA+GGG 0.641875 7_4:-62393879 None:intergenic
GAAGGGACTGATTTCTACGA+AGG 0.643261 7_4:+62390084 Msa1169390:CDS
GGTTGATAAAGATGCATCAG+TGG 0.645734 7_4:+62390575 Msa1169390:CDS
ACAGATTGAGAAAACGAATG+AGG 0.646242 7_4:-62389012 None:intergenic
TCAGAGCTATAAATACTGGA+AGG 0.646669 7_4:-62390186 None:intergenic
GTTCAAGCAAAGACGTAGGA+GGG 0.648088 7_4:-62394163 None:intergenic
TGATTATAACCCATTCTATG+CGG 0.650443 7_4:+62393885 Msa1169390:CDS
CCTGAAGATACAATTCCTGT+GGG 0.650890 7_4:+62391098 Msa1169390:CDS
CACAGGAATTGTATCTTCAG+GGG 0.660656 7_4:-62391096 None:intergenic
ACTGAAAGAAAGAATGAATG+TGG 0.662863 7_4:+62389375 Msa1169390:exon
TGAACACTAATAGGGTGAGG+TGG 0.663341 7_4:+62394076 Msa1169390:intron
CTTGCAGGGTTCTAATCCGG+AGG 0.664062 7_4:+62389951 Msa1169390:CDS
AGACAGCAACTTCCAATGAG+GGG 0.667001 7_4:+62390718 Msa1169390:CDS
TCATAGCGTATCTGATTCGG+GGG 0.670402 7_4:+62389774 Msa1169390:CDS
AAGCCTTATCCCACTAAGTG+GGG 0.671687 7_4:-62394463 None:intergenic
ACCACCAAAAGGGTGAAAAG+GGG 0.671766 7_4:-62389446 None:intergenic
AGCACATCGAATATCTGCTG+AGG 0.674065 7_4:+62390938 Msa1169390:CDS
GGTGAATCAAAACTCAGCGG+AGG 0.674797 7_4:+62390407 Msa1169390:CDS
AGTTAGTAACACCTTCAACA+GGG 0.677470 7_4:-62389693 None:intergenic
AGGAGACTCAAGCCTACCTG+AGG 0.678173 7_4:-62391309 None:intergenic
TAGTGGTGATGAATCAAGTG+AGG 0.678368 7_4:+62391232 Msa1169390:CDS
GTATCTTGATAATTCCGGGG+AGG 0.679242 7_4:+62389618 Msa1169390:CDS
AGAATATGGAGAGAATGTTG+TGG 0.680826 7_4:+62389927 Msa1169390:CDS
TGATTTCTACGAAGGCAATG+AGG 0.683113 7_4:+62390092 Msa1169390:CDS
TAACATTCAGTTTCTCTACG+AGG 0.686208 7_4:+62391411 Msa1169390:CDS
GACCATCTTCGTCTGGACGT+AGG 0.688284 7_4:+62391159 Msa1169390:CDS
CTCAGAATTAGAGCCAACTG+AGG 0.700989 7_4:+62390017 Msa1169390:CDS
AAAGGGACCTATTTGTCACA+CGG 0.702150 7_4:+62390257 Msa1169390:CDS
AGCCATCTCCAACCTCAGGT+AGG 0.703115 7_4:+62391297 Msa1169390:CDS
TGTAATTGTTTGGTATTGGG+CGG 0.703952 7_4:+62394495 Msa1169390:three_prime_UTR
AGATTGGAACCAGACTGGGG+TGG 0.726345 7_4:+62392342 Msa1169390:CDS
AAAAGATTGGAACCAGACTG+GGG 0.727153 7_4:+62392339 Msa1169390:CDS
ACCTGTTCAAGCAAAGACGT+AGG 0.741164 7_4:-62394167 None:intergenic
ATTGGTGAATCAAAACTCAG+CGG 0.751587 7_4:+62390404 Msa1169390:CDS
GGGACCTATTTGTCACACGG+AGG 0.770332 7_4:+62390260 Msa1169390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTAAAAGTTTCTT+CGG + chr7_4:62389299-62389318 Msa1169390:five_prime_UTR 10.0%
!! ATTAAACAATTTAGAAATAT+TGG + chr7_4:62390477-62390496 Msa1169390:CDS 10.0%
!!! ATATTTGTTTTTTTCTTAAA+AGG + chr7_4:62392131-62392150 Msa1169390:intron 10.0%
!!! AATTTAAAATCAGAATTTCA+AGG + chr7_4:62390552-62390571 Msa1169390:CDS 15.0%
!!! ATTTAAAATCAGAATTTCAA+GGG + chr7_4:62390553-62390572 Msa1169390:CDS 15.0%
!! AAGAAAATCAAATAAACAAT+TGG - chr7_4:62390831-62390850 None:intergenic 15.0%
!!! TTTTTATTCTTAGTTATAGA+TGG - chr7_4:62390981-62391000 None:intergenic 15.0%
!!! GATTCATTTTATAAAATAAG+GGG - chr7_4:62391746-62391765 None:intergenic 15.0%
!!! GGATTCATTTTATAAAATAA+GGG - chr7_4:62391747-62391766 None:intergenic 15.0%
!! TTTACTTCATAAATGAAAAT+AGG + chr7_4:62391817-62391836 Msa1169390:intron 15.0%
!! TTACTTCATAAATGAAAATA+GGG + chr7_4:62391818-62391837 Msa1169390:intron 15.0%
!! ATAAAATTCAATGAAACAAT+AGG - chr7_4:62393236-62393255 None:intergenic 15.0%
!!! ATATTTTAACAATGATAACT+GGG - chr7_4:62393468-62393487 None:intergenic 15.0%
!!! AATATTTTAACAATGATAAC+TGG - chr7_4:62393469-62393488 None:intergenic 15.0%
!!! TTTTGTCTTATTTACTTATA+TGG + chr7_4:62393683-62393702 Msa1169390:intron 15.0%
!!! ATTGAATTGAATTTTGTTGT+GGG - chr7_4:62388915-62388934 None:intergenic 20.0%
!!! AATTGAATTGAATTTTGTTG+TGG - chr7_4:62388916-62388935 None:intergenic 20.0%
!!! TTTTTAAGTTGAATTTGACT+TGG + chr7_4:62389128-62389147 Msa1169390:intron 20.0%
!! ATTGTGAAGATAAATGTTAA+TGG + chr7_4:62389574-62389593 Msa1169390:CDS 20.0%
!! TTGTGAAGATAAATGTTAAT+GGG + chr7_4:62389575-62389594 Msa1169390:CDS 20.0%
!!! TTTAAAATCAGAATTTCAAG+GGG + chr7_4:62390554-62390573 Msa1169390:CDS 20.0%
!!! AATTGGCTTAATCAAATAAT+AGG - chr7_4:62390814-62390833 None:intergenic 20.0%
!! CAAAGTATATATAGTGATAT+GGG - chr7_4:62391482-62391501 None:intergenic 20.0%
!!! TGAACTTTTAATTTCATAAC+AGG + chr7_4:62391527-62391546 Msa1169390:intron 20.0%
!! TTGATGCTCATATATATTTA+TGG + chr7_4:62391550-62391569 Msa1169390:CDS 20.0%
!!! GGGATTCATTTTATAAAATA+AGG - chr7_4:62391748-62391767 None:intergenic 20.0%
!!! TTTGTCTTTTAGTAATCTTA+TGG + chr7_4:62391861-62391880 Msa1169390:intron 20.0%
!!! TCTTTTCAAAATTTAGACAA+AGG - chr7_4:62391984-62392003 None:intergenic 20.0%
!!! TTTTCTTCATTATCTTTTTC+TGG + chr7_4:62392008-62392027 Msa1169390:intron 20.0%
!!! TATGAATATGTGCATTTTTA+AGG - chr7_4:62392259-62392278 None:intergenic 20.0%
!!! CTTAATGGTATTCTTTTTTA+CGG + chr7_4:62392653-62392672 Msa1169390:intron 20.0%
!!! ATGATAAATATTTTTCCCTT+TGG - chr7_4:62393961-62393980 None:intergenic 20.0%
!! AATATTTATCATTAACCCTA+AGG + chr7_4:62393969-62393988 Msa1169390:CDS 20.0%
!! ACTTTCAAAACTAACAAATT+TGG + chr7_4:62394233-62394252 Msa1169390:intron 20.0%
!!! TTTCAGTTACATTTTTTACA+CGG + chr7_4:62394344-62394363 Msa1169390:three_prime_UTR 20.0%
!! GTTCTATCATAAAACATATT+TGG - chr7_4:62394413-62394432 None:intergenic 20.0%
! ATGTAGCAAAAAAAAGAAGA+AGG - chr7_4:62389044-62389063 None:intergenic 25.0%
!! AAGATTTAAGTAACGTTTTG+AGG - chr7_4:62389171-62389190 None:intergenic 25.0%
! TTGCAAGAAAAGAAAAGAAA+AGG - chr7_4:62389195-62389214 None:intergenic 25.0%
!! CTGAATTTCTTGATTAGTTA+CGG - chr7_4:62389231-62389250 None:intergenic 25.0%
!! AAATTCAGATAATCGATTCT+TGG + chr7_4:62389243-62389262 Msa1169390:five_prime_UTR 25.0%
!! AATTCAGATAATCGATTCTT+GGG + chr7_4:62389244-62389263 Msa1169390:five_prime_UTR 25.0%
!! TAGAAAAGTTCCAGAATTTT+GGG - chr7_4:62389338-62389357 None:intergenic 25.0%
!! ATAGAAAAGTTCCAGAATTT+TGG - chr7_4:62389339-62389358 None:intergenic 25.0%
! ATTTATCTTCACAATCTTCT+CGG - chr7_4:62389569-62389588 None:intergenic 25.0%
! TGTGAAGATAAATGTTAATG+GGG + chr7_4:62389576-62389595 Msa1169390:CDS 25.0%
!! CATATGTATCTTGATAATTC+CGG + chr7_4:62389613-62389632 Msa1169390:CDS 25.0%
!! ATATGTATCTTGATAATTCC+GGG + chr7_4:62389614-62389633 Msa1169390:CDS 25.0%
!! AGTGTTGAAATTGATATTAC+TGG + chr7_4:62389739-62389758 Msa1169390:CDS 25.0%
!!! AGTATTTATAGCTCTGATAT+CGG + chr7_4:62390192-62390211 Msa1169390:CDS 25.0%
!! ACTAATAATTTCAAGTACAG+TGG - chr7_4:62390673-62390692 None:intergenic 25.0%
! TGTACTTGAAATTATTAGTG+AGG + chr7_4:62390674-62390693 Msa1169390:CDS 25.0%
! CCAAAGTATATATAGTGATA+TGG - chr7_4:62391483-62391502 None:intergenic 25.0%
! CCATATCACTATATATACTT+TGG + chr7_4:62391480-62391499 Msa1169390:intron 25.0%
! CTCATATATATTTATGGAAG+TGG + chr7_4:62391556-62391575 Msa1169390:CDS 25.0%
! AAGAATTGTAATTTCAGATG+TGG + chr7_4:62391584-62391603 Msa1169390:CDS 25.0%
! TTATAAAATGAATCCCAGTT+TGG + chr7_4:62391752-62391771 Msa1169390:intron 25.0%
! AACAATTACTGAAATTTGCA+TGG - chr7_4:62391783-62391802 None:intergenic 25.0%
! TCATAAATGAAAATAGGGAA+AGG + chr7_4:62391823-62391842 Msa1169390:intron 25.0%
! CAACTAAATAGATACCTTAA+TGG - chr7_4:62392383-62392402 None:intergenic 25.0%
! TTGTCTCAAAACTGAAAATT+TGG - chr7_4:62392597-62392616 None:intergenic 25.0%
! TTAAGTTAACAGAAGTTGTT+TGG - chr7_4:62392638-62392657 None:intergenic 25.0%
! AACAACTTCTGTTAACTTAA+TGG + chr7_4:62392638-62392657 Msa1169390:intron 25.0%
! ATATATACACACACATTAAC+AGG + chr7_4:62392753-62392772 Msa1169390:intron 25.0%
!! GTAAAAGACTAGTTAGATAA+TGG + chr7_4:62392892-62392911 Msa1169390:intron 25.0%
! TAGTTGAATCTAAATTCTAC+AGG - chr7_4:62393137-62393156 None:intergenic 25.0%
! TTAGATTCAACTACATTTAG+TGG + chr7_4:62393144-62393163 Msa1169390:intron 25.0%
!! TTATATAACCAGGAACTTTT+TGG + chr7_4:62393349-62393368 Msa1169390:CDS 25.0%
! TTTGTTTAAATACCTGTTTC+AGG - chr7_4:62393379-62393398 None:intergenic 25.0%
! AACAGGTATTTAAACAAATC+TGG + chr7_4:62393381-62393400 Msa1169390:intron 25.0%
!! AAAATAAGAGTATGCATTAC+AGG - chr7_4:62393410-62393429 None:intergenic 25.0%
! AAAATATTGCATTACCTGAT+AGG + chr7_4:62393481-62393500 Msa1169390:intron 25.0%
! TACCATAACTATATATTTGC+AGG + chr7_4:62393508-62393527 Msa1169390:intron 25.0%
! ATCCTGCAAATATATAGTTA+TGG - chr7_4:62393513-62393532 None:intergenic 25.0%
! ATAACTATATATTTGCAGGA+TGG + chr7_4:62393512-62393531 Msa1169390:intron 25.0%
!! TTTTAATGAGAGAGCAATTA+AGG + chr7_4:62393612-62393631 Msa1169390:intron 25.0%
! GAACTTAGTTACAGTAAAAT+AGG + chr7_4:62393931-62393950 Msa1169390:CDS 25.0%
! AGTAAAATAGGAATTCCAAA+GGG + chr7_4:62393943-62393962 Msa1169390:CDS 25.0%
!!! TGGATTATTGTTATTTCTGA+CGG + chr7_4:62394005-62394024 Msa1169390:intron 25.0%
! ATATGCTTATGAACACTAAT+AGG + chr7_4:62394067-62394086 Msa1169390:intron 25.0%
! TATGCTTATGAACACTAATA+GGG + chr7_4:62394068-62394087 Msa1169390:intron 25.0%
!!! AGAAAGCATTTACAAAACAA+CGG + chr7_4:62394191-62394210 Msa1169390:intron 25.0%
! ACATAGAACTAATCAATATC+TGG - chr7_4:62394321-62394340 None:intergenic 25.0%
! TGGTATTAGGAAAAATTTAG+AGG + chr7_4:62394373-62394392 Msa1169390:three_prime_UTR 25.0%
! TTGTTGTAATTGTTTGGTAT+TGG + chr7_4:62394491-62394510 Msa1169390:three_prime_UTR 25.0%
! TGTTGTAATTGTTTGGTATT+GGG + chr7_4:62394492-62394511 Msa1169390:three_prime_UTR 25.0%
!!! TTTAAGTAACGTTTTGAGGA+TGG - chr7_4:62389167-62389186 None:intergenic 30.0%
! AAAAGTTTCTTCGGTCTTTT+TGG + chr7_4:62389308-62389327 Msa1169390:five_prime_UTR 30.0%
ACTGAAAGAAAGAATGAATG+TGG + chr7_4:62389375-62389394 Msa1169390:exon 30.0%
AAAGAAAGAATGAATGTGGT+GGG + chr7_4:62389379-62389398 Msa1169390:exon 30.0%
! ATTTGGAACCTTGATAACTA+AGG + chr7_4:62389405-62389424 Msa1169390:CDS 30.0%
! TTTGGAACCTTGATAACTAA+GGG + chr7_4:62389406-62389425 Msa1169390:CDS 30.0%
ATAAACACCCTTAGTTATCA+AGG - chr7_4:62389416-62389435 None:intergenic 30.0%
! GTAAGGTTTGGTAAATTTCA+AGG + chr7_4:62389529-62389548 Msa1169390:CDS 30.0%
! AAATTTCAAGGTGTTCTCAA+AGG + chr7_4:62389541-62389560 Msa1169390:CDS 30.0%
! TATGTATCTTGATAATTCCG+GGG + chr7_4:62389615-62389634 Msa1169390:CDS 30.0%
TCAACCAACAATTGAAGATT+CGG + chr7_4:62389894-62389913 Msa1169390:CDS 30.0%
ACAAATTCCTCAATTTCACT+TGG + chr7_4:62390053-62390072 Msa1169390:CDS 30.0%
CAAATTCCTCAATTTCACTT+GGG + chr7_4:62390054-62390073 Msa1169390:CDS 30.0%
GATATCAGAGCTATAAATAC+TGG - chr7_4:62390193-62390212 None:intergenic 30.0%
! AAATAGGTCCCTTTTCTATT+TGG - chr7_4:62390251-62390270 None:intergenic 30.0%
ATGGCAATTTACAAGATGAA+AGG + chr7_4:62390376-62390395 Msa1169390:CDS 30.0%
GAATTTGATATCTCACTTTG+TGG + chr7_4:62390864-62390883 Msa1169390:intron 30.0%
TCTCAAAGATGGTCAAAATA+TGG + chr7_4:62391388-62391407 Msa1169390:CDS 30.0%
TATATAGTGATATGGGAACT+TGG - chr7_4:62391475-62391494 None:intergenic 30.0%
ATCACTATATATACTTTGGC+TGG + chr7_4:62391484-62391503 Msa1169390:intron 30.0%
TCAACCTGAAATAAGCAAAA+TGG - chr7_4:62391510-62391529 None:intergenic 30.0%
ATTGTAATTTCAGATGTGGA+TGG + chr7_4:62391588-62391607 Msa1169390:CDS 30.0%
! ATTTTGTCGAGTTCAAAGAA+TGG - chr7_4:62391660-62391679 None:intergenic 30.0%
AATAAGGGGTTAATTGAGTA+CGG - chr7_4:62391732-62391751 None:intergenic 30.0%
CAAACTAACGATGAATGTTT+AGG - chr7_4:62391930-62391949 None:intergenic 30.0%
AATTTAGACAAAGGATCACT+AGG - chr7_4:62391975-62391994 None:intergenic 30.0%
!! TATCTTTTTCTGGCCATTTT+TGG + chr7_4:62392018-62392037 Msa1169390:intron 30.0%
CAATCAAAGTAGATACTAGT+TGG - chr7_4:62392054-62392073 None:intergenic 30.0%
GTAATATGTTTGTGCATGTA+AGG - chr7_4:62392223-62392242 None:intergenic 30.0%
!! GAATATGTGCATTTTTAAGG+AGG - chr7_4:62392256-62392275 None:intergenic 30.0%
! TTCCAATCTTTTCCAACTAA+AGG - chr7_4:62392331-62392350 None:intergenic 30.0%
!! CAAACAGTTGATGATGTAAA+TGG + chr7_4:62392449-62392468 Msa1169390:intron 30.0%
AAATGGTAGAAGATATTTCG+AGG + chr7_4:62392466-62392485 Msa1169390:intron 30.0%
AATGGTAGAAGATATTTCGA+GGG + chr7_4:62392467-62392486 Msa1169390:intron 30.0%
! ATTTAAAGCATCTTGTGTCT+TGG + chr7_4:62392497-62392516 Msa1169390:intron 30.0%
TAATGAAATGGTAGCAACAA+AGG - chr7_4:62392539-62392558 None:intergenic 30.0%
GTGACAGAAACATAATGAAA+TGG - chr7_4:62392551-62392570 None:intergenic 30.0%
AAAATTTGGACCCCTAATTT+GGG - chr7_4:62392583-62392602 None:intergenic 30.0%
CTCTTTGCAGCTATATAATA+TGG + chr7_4:62392915-62392934 Msa1169390:intron 30.0%
TAAGTGTCCAAATAGAAACA+GGG - chr7_4:62393065-62393084 None:intergenic 30.0%
TTAAGTGTCCAAATAGAAAC+AGG - chr7_4:62393066-62393085 None:intergenic 30.0%
CACTTAATGCTTGTTTGATT+TGG + chr7_4:62393079-62393098 Msa1169390:intron 30.0%
GAATCTAAATTCTACAGGAA+TGG - chr7_4:62393132-62393151 None:intergenic 30.0%
! TCCTGATTTTGTTAGGAAAA+TGG + chr7_4:62393284-62393303 Msa1169390:intron 30.0%
! TCCATTTTCCTAACAAAATC+AGG - chr7_4:62393288-62393307 None:intergenic 30.0%
TGATATAAGGATTTGTGTCT+AGG - chr7_4:62393763-62393782 None:intergenic 30.0%
AGTTGCACATTAGTGATATA+AGG - chr7_4:62393776-62393795 None:intergenic 30.0%
CATTATTACCCAAACATGAA+AGG - chr7_4:62393834-62393853 None:intergenic 30.0%
! TTTGGGTAATAATGTTTTGC+AGG + chr7_4:62393840-62393859 Msa1169390:intron 30.0%
!! AGAATGGGTTATAATCAGAA+GGG - chr7_4:62393882-62393901 None:intergenic 30.0%
!! TAGAATGGGTTATAATCAGA+AGG - chr7_4:62393883-62393902 None:intergenic 30.0%
TGATTATAACCCATTCTATG+CGG + chr7_4:62393885-62393904 Msa1169390:CDS 30.0%
CAGTAAAATAGGAATTCCAA+AGG + chr7_4:62393942-62393961 Msa1169390:CDS 30.0%
!!! GTATTTTCTTTAGTTCTCAC+AGG + chr7_4:62394031-62394050 Msa1169390:intron 30.0%
!! GAAAGCATTTACAAAACAAC+GGG + chr7_4:62394192-62394211 Msa1169390:intron 30.0%
!! TGGTTTGCAATTTTCATTTG+TGG + chr7_4:62394253-62394272 Msa1169390:intron 30.0%
ACTTCAACTCTTGGAATTAT+TGG + chr7_4:62394283-62394302 Msa1169390:CDS 30.0%
AACTAATCAATATCTGGCAT+AGG - chr7_4:62394315-62394334 None:intergenic 30.0%
!!! CATTTTTTACACGGATTCTT+TGG + chr7_4:62394353-62394372 Msa1169390:three_prime_UTR 30.0%
! TGGTTGTTGTTGTAATTGTT+TGG + chr7_4:62394485-62394504 Msa1169390:three_prime_UTR 30.0%
! TAGCATTTCCGTTAACATTT+TGG - chr7_4:62394525-62394544 None:intergenic 30.0%
ACAGATTGAGAAAACGAATG+AGG - chr7_4:62389015-62389034 None:intergenic 35.0%
!!! TTTTGGTTCTCCCAAAATTC+TGG + chr7_4:62389325-62389344 Msa1169390:five_prime_UTR 35.0%
TCTTTCTTTCAGTAGTCAGA+GGG - chr7_4:62389368-62389387 None:intergenic 35.0%
TTCTTTCTTTCAGTAGTCAG+AGG - chr7_4:62389369-62389388 None:intergenic 35.0%
GAAAGAAAGAATGAATGTGG+TGG + chr7_4:62389378-62389397 Msa1169390:exon 35.0%
! ATGAATGTGGTGGGAAAATT+TGG + chr7_4:62389388-62389407 Msa1169390:CDS 35.0%
! ATTGTTGTTCAGCAACAAGA+TGG + chr7_4:62389481-62389500 Msa1169390:CDS 35.0%
! AGCAACAAGATGGAACTTTT+CGG + chr7_4:62389491-62389510 Msa1169390:CDS 35.0%
TTACCAAACCTTACATACCA+AGG - chr7_4:62389523-62389542 None:intergenic 35.0%
! TTTTACAAAATAAGCCTCCC+CGG - chr7_4:62389635-62389654 None:intergenic 35.0%
!!! GGAGGCTTATTTTGTAAAAG+AGG + chr7_4:62389636-62389655 Msa1169390:CDS 35.0%
!!! GGCTTATTTTGTAAAAGAGG+TGG + chr7_4:62389639-62389658 Msa1169390:CDS 35.0%
! TTTTGTAAAAGAGGTGGATG+AGG + chr7_4:62389645-62389664 Msa1169390:CDS 35.0%
AGTTAGTAACACCTTCAACA+GGG - chr7_4:62389696-62389715 None:intergenic 35.0%
! TCTGAGTTTACTTCTGAAGA+CGG + chr7_4:62389715-62389734 Msa1169390:CDS 35.0%
TGATCATAGCGTATCTGATT+CGG + chr7_4:62389771-62389790 Msa1169390:CDS 35.0%
! AGTTTTGCCAGAACTTCAAA+AGG + chr7_4:62389828-62389847 Msa1169390:CDS 35.0%
ATAAAATGTCCGACCAACAT+CGG - chr7_4:62389860-62389879 None:intergenic 35.0%
AGAATATGGAGAGAATGTTG+TGG + chr7_4:62389927-62389946 Msa1169390:CDS 35.0%
!! TTGGCTCTAATTCTGAGATA+GGG - chr7_4:62390014-62390033 None:intergenic 35.0%
! GTGTTGCTGATTATGTTAGT+AGG + chr7_4:62390139-62390158 Msa1169390:CDS 35.0%
TCAGAGCTATAAATACTGGA+AGG - chr7_4:62390189-62390208 None:intergenic 35.0%
GAAGGTTGCCAAATAGAAAA+GGG + chr7_4:62390240-62390259 Msa1169390:CDS 35.0%
! GAGTGTTTTCAAAAGTTGCT+TGG + chr7_4:62390323-62390342 Msa1169390:CDS 35.0%
!!! TGAGTTTTGATTCACCAATG+AGG - chr7_4:62390403-62390422 None:intergenic 35.0%
ATTGGTGAATCAAAACTCAG+CGG + chr7_4:62390404-62390423 Msa1169390:CDS 35.0%
!!! AAGCCATTTTGGTTTGAGTA+AGG + chr7_4:62390746-62390765 Msa1169390:intron 35.0%
AGTCCTTACTCAAACCAAAA+TGG - chr7_4:62390752-62390771 None:intergenic 35.0%
!! TTCACTTTTCGAAAAGCAAG+AGG - chr7_4:62391197-62391216 None:intergenic 35.0%
!! GATTCCGAATCTGATTTGTT+TGG + chr7_4:62391266-62391285 Msa1169390:CDS 35.0%
AGAGCCAAACAAATCAGATT+CGG - chr7_4:62391273-62391292 None:intergenic 35.0%
GATGCTATCATCTCATTAGA+GGG - chr7_4:62391362-62391381 None:intergenic 35.0%
TGATGCTATCATCTCATTAG+AGG - chr7_4:62391363-62391382 None:intergenic 35.0%
GCATCATTGAATCTCAAAGA+TGG + chr7_4:62391377-62391396 Msa1169390:CDS 35.0%
TAACATTCAGTTTCTCTACG+AGG + chr7_4:62391411-62391430 Msa1169390:CDS 35.0%
AACATTCAGTTTCTCTACGA+GGG + chr7_4:62391412-62391431 Msa1169390:CDS 35.0%
AAGGTAAAGAACGATAGCAA+TGG - chr7_4:62391692-62391711 None:intergenic 35.0%
AAAATAGGGAAAGGAAATGC+AGG + chr7_4:62391832-62391851 Msa1169390:intron 35.0%
TGGTTGATCTTCACCAAAAA+TGG - chr7_4:62392034-62392053 None:intergenic 35.0%
! TGCTTTCAGATCTGATGTTT+TGG + chr7_4:62392294-62392313 Msa1169390:intron 35.0%
! GCTTTCAGATCTGATGTTTT+GGG + chr7_4:62392295-62392314 Msa1169390:intron 35.0%
! CTTTCAGATCTGATGTTTTG+GGG + chr7_4:62392296-62392315 Msa1169390:intron 35.0%
TGCCTTTAGTTGGAAAAGAT+TGG + chr7_4:62392326-62392345 Msa1169390:CDS 35.0%
GAAAATTTGGACCCCTAATT+TGG - chr7_4:62392584-62392603 None:intergenic 35.0%
! GAGTGATTTTTGCAAACACT+TGG + chr7_4:62392715-62392734 Msa1169390:intron 35.0%
!!! CAAGTCTGGTTTTTGCTTTA+TGG + chr7_4:62392849-62392868 Msa1169390:intron 35.0%
!! CATCTTTCCCTGTTTCTATT+TGG + chr7_4:62393055-62393074 Msa1169390:intron 35.0%
! TACCAGATCCTGATTTTGTT+AGG + chr7_4:62393277-62393296 Msa1169390:intron 35.0%
TTCCTAACAAAATCAGGATC+TGG - chr7_4:62393282-62393301 None:intergenic 35.0%
!!! CTTTTTGGTTAACCTGAAAC+AGG + chr7_4:62393364-62393383 Msa1169390:CDS 35.0%
GATGGAAAAACCTTACCAAA+AGG + chr7_4:62393530-62393549 Msa1169390:CDS 35.0%
! GAAATAACAACAGGTCCTTT+TGG - chr7_4:62393548-62393567 None:intergenic 35.0%
TTAAAAGTTCCTGACCTTCT+CGG - chr7_4:62393598-62393617 None:intergenic 35.0%
TTACCAACACCTTTCATGTT+TGG + chr7_4:62393822-62393841 Msa1169390:intron 35.0%
TACCAACACCTTTCATGTTT+GGG + chr7_4:62393823-62393842 Msa1169390:intron 35.0%
GATTATAACCCATTCTATGC+GGG + chr7_4:62393886-62393905 Msa1169390:CDS 35.0%
ATTATAACCCATTCTATGCG+GGG + chr7_4:62393887-62393906 Msa1169390:CDS 35.0%
CATTATAGATGCAGACCTTA+GGG - chr7_4:62393987-62394006 None:intergenic 35.0%
TTATGAACACTAATAGGGTG+AGG + chr7_4:62394073-62394092 Msa1169390:intron 35.0%
! TTGCAATTTTCATTTGTGGC+AGG + chr7_4:62394257-62394276 Msa1169390:intron 35.0%
TACACGGATTCTTTGGTATT+AGG + chr7_4:62394360-62394379 Msa1169390:three_prime_UTR 35.0%
! TGTAATTGTTTGGTATTGGG+CGG + chr7_4:62394495-62394514 Msa1169390:three_prime_UTR 35.0%
TGCTATATGTTCGAACTACT+TGG + chr7_4:62394540-62394559 Msa1169390:three_prime_UTR 35.0%
! AGTAAGTCACTTTACAAGCA+AGG - chr7_4:62394578-62394597 None:intergenic 35.0%
TTAGGGGTTGGAATGGAATT+TGG - chr7_4:62388884-62388903 None:intergenic 40.0%
TTACAAGTTAGGGGTTGGAA+TGG - chr7_4:62388891-62388910 None:intergenic 40.0%
TGTTGTGGGCTTACAAGTTA+GGG - chr7_4:62388901-62388920 None:intergenic 40.0%
TTGTTGTGGGCTTACAAGTT+AGG - chr7_4:62388902-62388921 None:intergenic 40.0%
! CTTTCTTGCAGTGCTTTGAA+TGG - chr7_4:62388953-62388972 None:intergenic 40.0%
GAGTTAGTAACACCTTCAAC+AGG - chr7_4:62389697-62389716 None:intergenic 40.0%
GATCATAGCGTATCTGATTC+GGG + chr7_4:62389772-62389791 Msa1169390:CDS 40.0%
! ATCATAGCGTATCTGATTCG+GGG + chr7_4:62389773-62389792 Msa1169390:CDS 40.0%
TTTGCCAGAACTTCAAAAGG+TGG + chr7_4:62389831-62389850 Msa1169390:CDS 40.0%
!!! GATTCCACCTTTTGAAGTTC+TGG - chr7_4:62389838-62389857 None:intergenic 40.0%
TCAGCCGAATCTTCAATTGT+TGG - chr7_4:62389901-62389920 None:intergenic 40.0%
!! TCGGCTGATTTGTCAGAATA+TGG + chr7_4:62389913-62389932 Msa1169390:CDS 40.0%
!! TGGCTCTAATTCTGAGATAG+GGG - chr7_4:62390013-62390032 None:intergenic 40.0%
!! GTTGGCTCTAATTCTGAGAT+AGG - chr7_4:62390015-62390034 None:intergenic 40.0%
! GACTGCAAATTTTCCTCAGT+TGG - chr7_4:62390033-62390052 None:intergenic 40.0%
TGATTTCTACGAAGGCAATG+AGG + chr7_4:62390092-62390111 Msa1169390:CDS 40.0%
! TGCTGATTATGTTAGTAGGC+CGG + chr7_4:62390143-62390162 Msa1169390:CDS 40.0%
GATATCGGTAATAGTGCTTC+CGG + chr7_4:62390207-62390226 Msa1169390:CDS 40.0%
ATATCGGTAATAGTGCTTCC+GGG + chr7_4:62390208-62390227 Msa1169390:CDS 40.0%
CGAAGGTTGCCAAATAGAAA+AGG + chr7_4:62390239-62390258 Msa1169390:CDS 40.0%
AAAGGGACCTATTTGTCACA+CGG + chr7_4:62390257-62390276 Msa1169390:CDS 40.0%
AGCTGCATCATGCATGAATT+CGG + chr7_4:62390299-62390318 Msa1169390:CDS 40.0%
! CTTAAATGAACTTGCTCAGC+AGG + chr7_4:62390347-62390366 Msa1169390:CDS 40.0%
ACAAGATGAAAGGTCCTCAT+TGG + chr7_4:62390386-62390405 Msa1169390:CDS 40.0%
!! GGTTGATAAAGATGCATCAG+TGG + chr7_4:62390575-62390594 Msa1169390:CDS 40.0%
ACTTTGTGGTCACGAACTTA+AGG + chr7_4:62390878-62390897 Msa1169390:CDS 40.0%
TCAGAGAGAGTTATCTACCA+TGG + chr7_4:62391015-62391034 Msa1169390:CDS 40.0%
CAGAGAGAGTTATCTACCAT+GGG + chr7_4:62391016-62391035 Msa1169390:CDS 40.0%
GAGTTATCTACCATGGGAAA+AGG + chr7_4:62391022-62391041 Msa1169390:CDS 40.0%
CACAGGAATTGTATCTTCAG+GGG - chr7_4:62391099-62391118 None:intergenic 40.0%
CCACAGGAATTGTATCTTCA+GGG - chr7_4:62391100-62391119 None:intergenic 40.0%
CCTGAAGATACAATTCCTGT+GGG + chr7_4:62391098-62391117 Msa1169390:CDS 40.0%
! TAGTGGTGATGAATCAAGTG+AGG + chr7_4:62391232-62391251 Msa1169390:CDS 40.0%
! TTCTAGGAACACAACAGGTT+TGG + chr7_4:62391435-62391454 Msa1169390:intron 40.0%
!! CTGGCCATTTTGCTTATTTC+AGG + chr7_4:62391503-62391522 Msa1169390:intron 40.0%
! GTACTGTCAGTAGTCTTACT+TGG - chr7_4:62391622-62391641 None:intergenic 40.0%
GACTACTGACAGTACTTCTT+AGG + chr7_4:62391627-62391646 Msa1169390:intron 40.0%
TTGCATGGTATGTCCAAACT+GGG - chr7_4:62391768-62391787 None:intergenic 40.0%
TTTGCATGGTATGTCCAAAC+TGG - chr7_4:62391769-62391788 None:intergenic 40.0%
GAAAAGATTGGAACCAGACT+GGG + chr7_4:62392338-62392357 Msa1169390:CDS 40.0%
AAAAGATTGGAACCAGACTG+GGG + chr7_4:62392339-62392358 Msa1169390:CDS 40.0%
! AAGGCTTTTCTCTGCCATTA+AGG + chr7_4:62392366-62392385 Msa1169390:CDS 40.0%
ACAACGTGCTTCCCAAATTA+GGG + chr7_4:62392569-62392588 Msa1169390:intron 40.0%
CACACATTAACAGGTTTCCT+AGG + chr7_4:62392762-62392781 Msa1169390:intron 40.0%
! AGGAACTTGCTTAAGTTCCT+AGG - chr7_4:62392782-62392801 None:intergenic 40.0%
TAAGCAAGTTCCTTTGAGCT+TGG + chr7_4:62392789-62392808 Msa1169390:intron 40.0%
AAGCAAGTTCCTTTGAGCTT+GGG + chr7_4:62392790-62392809 Msa1169390:intron 40.0%
AATCTCAAACCCAAGCTCAA+AGG - chr7_4:62392802-62392821 None:intergenic 40.0%
ACGCAGTGAAGTCATTAAAG+AGG - chr7_4:62393031-62393050 None:intergenic 40.0%
TTCTACAGGAATGGTGTAGA+AGG - chr7_4:62393123-62393142 None:intergenic 40.0%
TATAAGCCTGGACAATAGCA+CGG - chr7_4:62393334-62393353 None:intergenic 40.0%
TTGTCCAGGCTTATATAACC+AGG + chr7_4:62393339-62393358 Msa1169390:CDS 40.0%
AGTTCCTGGTTATATAAGCC+TGG - chr7_4:62393346-62393365 None:intergenic 40.0%
CAGGTTAACCAAAAAGTTCC+TGG - chr7_4:62393360-62393379 None:intergenic 40.0%
AGTTATGGTATCAGCCTATC+AGG - chr7_4:62393498-62393517 None:intergenic 40.0%
! AACAACAGGTCCTTTTGGTA+AGG - chr7_4:62393543-62393562 None:intergenic 40.0%
CCATCAGGTGAAATAACAAC+AGG - chr7_4:62393557-62393576 None:intergenic 40.0%
!! CCTGTTGTTATTTCACCTGA+TGG + chr7_4:62393554-62393573 Msa1169390:CDS 40.0%
CAAGCAATCTTGAACTCATG+AGG - chr7_4:62393726-62393745 None:intergenic 40.0%
GTTCAAGATTGCTTGTCTAG+AGG + chr7_4:62393731-62393750 Msa1169390:CDS 40.0%
! TACCCAAACATGAAAGGTGT+TGG - chr7_4:62393828-62393847 None:intergenic 40.0%
CCATTATAGATGCAGACCTT+AGG - chr7_4:62393988-62394007 None:intergenic 40.0%
CCTAAGGTCTGCATCTATAA+TGG + chr7_4:62393985-62394004 Msa1169390:intron 40.0%
! CAATTTTCATTTGTGGCAGG+AGG + chr7_4:62394260-62394279 Msa1169390:intron 40.0%
GTTGTGGGCTTACAAGTTAG+GGG - chr7_4:62388900-62388919 None:intergenic 45.0%
ACCACCAAAAGGGTGAAAAG+GGG - chr7_4:62389449-62389468 None:intergenic 45.0%
CACCACCAAAAGGGTGAAAA+GGG - chr7_4:62389450-62389469 None:intergenic 45.0%
CATCAACAGCACCACCAAAA+GGG - chr7_4:62389459-62389478 None:intergenic 45.0%
ACATCAACAGCACCACCAAA+AGG - chr7_4:62389460-62389479 None:intergenic 45.0%
ACGCCTTGGTATGTAAGGTT+TGG + chr7_4:62389517-62389536 Msa1169390:CDS 45.0%
! GTATCTTGATAATTCCGGGG+AGG + chr7_4:62389618-62389637 Msa1169390:CDS 45.0%
GACTCAAATGTCCCTGTTGA+AGG + chr7_4:62389682-62389701 Msa1169390:CDS 45.0%
!! TCATAGCGTATCTGATTCGG+GGG + chr7_4:62389774-62389793 Msa1169390:CDS 45.0%
CAAAAGGTGGAATCCGATGT+TGG + chr7_4:62389844-62389863 Msa1169390:CDS 45.0%
AGAGAATGTTGTGGACTTGC+AGG + chr7_4:62389936-62389955 Msa1169390:CDS 45.0%
GAGAATGTTGTGGACTTGCA+GGG + chr7_4:62389937-62389956 Msa1169390:CDS 45.0%
TTCTAATCCGGAGGTGATCT+TGG + chr7_4:62389960-62389979 Msa1169390:CDS 45.0%
! GTGATCTTGGTTAGCGTTGA+CGG + chr7_4:62389973-62389992 Msa1169390:CDS 45.0%
CTCAGAATTAGAGCCAACTG+AGG + chr7_4:62390017-62390036 Msa1169390:CDS 45.0%
TAGAAATCAGTCCCTTCACC+TGG - chr7_4:62390081-62390100 None:intergenic 45.0%
! GAAGGGACTGATTTCTACGA+AGG + chr7_4:62390084-62390103 Msa1169390:CDS 45.0%
! GGCAATGAGGAGTTTAGTTC+TGG + chr7_4:62390105-62390124 Msa1169390:CDS 45.0%
! ACATCAGCTGTTGAAGCATC+CGG - chr7_4:62390165-62390184 None:intergenic 45.0%
TATCGGTAATAGTGCTTCCG+GGG + chr7_4:62390209-62390228 Msa1169390:CDS 45.0%
GTTTCCTCCGTGTGACAAAT+AGG - chr7_4:62390267-62390286 None:intergenic 45.0%
ATTTGTCACACGGAGGAAAC+TGG + chr7_4:62390267-62390286 Msa1169390:CDS 45.0%
CTTGCTCAGCAGGATGATTA+TGG + chr7_4:62390357-62390376 Msa1169390:CDS 45.0%
GAAGAAGTAGCACCACTGAT+GGG - chr7_4:62390513-62390532 None:intergenic 45.0%
TGAAGAAGTAGCACCACTGA+TGG - chr7_4:62390514-62390533 None:intergenic 45.0%
CCATTCCACATCATTCGTAC+CGG - chr7_4:62390628-62390647 None:intergenic 45.0%
TCATTGGAAGTTGCTGTCTG+AGG - chr7_4:62390717-62390736 None:intergenic 45.0%
TCAGACAGCAACTTCCAATG+AGG + chr7_4:62390716-62390735 Msa1169390:CDS 45.0%
CAGACAGCAACTTCCAATGA+GGG + chr7_4:62390717-62390736 Msa1169390:CDS 45.0%
AGACAGCAACTTCCAATGAG+GGG + chr7_4:62390718-62390737 Msa1169390:CDS 45.0%
TTGTGGTCACGAACTTAAGG+CGG + chr7_4:62390881-62390900 Msa1169390:CDS 45.0%
AGCACATCGAATATCTGCTG+AGG + chr7_4:62390938-62390957 Msa1169390:CDS 45.0%
ATTGTATCTTCAGGGGCAAC+AGG - chr7_4:62391092-62391111 None:intergenic 45.0%
CCCTGAAGATACAATTCCTG+TGG + chr7_4:62391097-62391116 Msa1169390:CDS 45.0%
CCCACAGGAATTGTATCTTC+AGG - chr7_4:62391101-62391120 None:intergenic 45.0%
TTCCTGTGGGTCAAGATGAT+AGG + chr7_4:62391111-62391130 Msa1169390:CDS 45.0%
AACCTATCATCTTGACCCAC+AGG - chr7_4:62391116-62391135 None:intergenic 45.0%
AAGTCCAGCGATGATAATCC+TGG + chr7_4:62391137-62391156 Msa1169390:CDS 45.0%
AAGACAGCTGAGCACAATAG+TGG + chr7_4:62391215-62391234 Msa1169390:CDS 45.0%
! CTCCTCGCAAGCAATTTGTT+AGG + chr7_4:62391327-62391346 Msa1169390:CDS 45.0%
GTCCTAACAAATTGCTTGCG+AGG - chr7_4:62391332-62391351 None:intergenic 45.0%
AGTTTCTCTACGAGGGTTCT+AGG + chr7_4:62391419-62391438 Msa1169390:CDS 45.0%
!! GGAAGTGTTGAACAGGGATA+AGG - chr7_4:62391711-62391730 None:intergenic 45.0%
!! GAGTACGGAAGTGTTGAACA+GGG - chr7_4:62391717-62391736 None:intergenic 45.0%
!! TGAGTACGGAAGTGTTGAAC+AGG - chr7_4:62391718-62391737 None:intergenic 45.0%
GGAAAAGATTGGAACCAGAC+TGG + chr7_4:62392337-62392356 Msa1169390:CDS 45.0%
CACAACGTGCTTCCCAAATT+AGG + chr7_4:62392568-62392587 Msa1169390:intron 45.0%
CAACGTGCTTCCCAAATTAG+GGG + chr7_4:62392570-62392589 Msa1169390:intron 45.0%
!! CTAGAAGTGCTTGTTGCATC+TGG + chr7_4:62392693-62392712 Msa1169390:intron 45.0%
TAGAGAGTGAGCTTAAAGCC+TGG + chr7_4:62392825-62392844 Msa1169390:intron 45.0%
AGCAAAAACCAGACTTGACC+AGG - chr7_4:62392846-62392865 None:intergenic 45.0%
ATAAGCCTGGACAATAGCAC+GGG - chr7_4:62393333-62393352 None:intergenic 45.0%
AGGGACGGAAATAATCCATC+AGG - chr7_4:62393572-62393591 None:intergenic 45.0%
TTCCTGACCTTCTCGGTAAA+GGG - chr7_4:62393591-62393610 None:intergenic 45.0%
TGAACACTAATAGGGTGAGG+TGG + chr7_4:62394076-62394095 Msa1169390:intron 45.0%
GTTCAAGCAAAGACGTAGGA+GGG - chr7_4:62394166-62394185 None:intergenic 45.0%
TGTTCAAGCAAAGACGTAGG+AGG - chr7_4:62394167-62394186 None:intergenic 45.0%
TCCTACGTCTTTGCTTGAAC+AGG + chr7_4:62394166-62394185 Msa1169390:CDS 45.0%
ACCTGTTCAAGCAAAGACGT+AGG - chr7_4:62394170-62394189 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr7_4:62394466-62394485 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7_4:62394467-62394486 None:intergenic 45.0%
GCGGCTGTCCAAAATGTTAA+CGG + chr7_4:62394514-62394533 Msa1169390:three_prime_UTR 45.0%
TGGGCTTACAAGTTAGGGGT+TGG - chr7_4:62388896-62388915 None:intergenic 50.0%
! GCTACCCCTTTTCACCCTTT+TGG + chr7_4:62389442-62389461 Msa1169390:CDS 50.0%
! ACCCCTTTTCACCCTTTTGG+TGG + chr7_4:62389445-62389464 Msa1169390:CDS 50.0%
GCACCACCAAAAGGGTGAAA+AGG - chr7_4:62389451-62389470 None:intergenic 50.0%
AGGTGGAATCCGATGTTGGT+CGG + chr7_4:62389848-62389867 Msa1169390:CDS 50.0%
! GGACTTGCAGGGTTCTAATC+CGG + chr7_4:62389948-62389967 Msa1169390:CDS 50.0%
ACGCTAACCAAGATCACCTC+CGG - chr7_4:62389970-62389989 None:intergenic 50.0%
CCTGGTCCCAAGTGAAATTG+AGG - chr7_4:62390063-62390082 None:intergenic 50.0%
CCTCAATTTCACTTGGGACC+AGG + chr7_4:62390060-62390079 Msa1169390:CDS 50.0%
TTTCACTTGGGACCAGGTGA+AGG + chr7_4:62390066-62390085 Msa1169390:CDS 50.0%
TTCACTTGGGACCAGGTGAA+GGG + chr7_4:62390067-62390086 Msa1169390:CDS 50.0%
CTATTTGGCAACCTTCGAGC+TGG - chr7_4:62390236-62390255 None:intergenic 50.0%
GGTGAATCAAAACTCAGCGG+AGG + chr7_4:62390407-62390426 Msa1169390:CDS 50.0%
GGTGAGTTATCTCCCATCAG+TGG + chr7_4:62390498-62390517 Msa1169390:CDS 50.0%
GCATCAGTGGAAGTTGACAC+TGG + chr7_4:62390588-62390607 Msa1169390:CDS 50.0%
!! GTGGAAGTTGACACTGGTTC+TGG + chr7_4:62390594-62390613 Msa1169390:CDS 50.0%
!! ACTGGTTCTGGCATTCGTTC+CGG + chr7_4:62390606-62390625 Msa1169390:CDS 50.0%
TCGTTCCGGTACGAATGATG+TGG + chr7_4:62390620-62390639 Msa1169390:CDS 50.0%
CCGGTACGAATGATGTGGAA+TGG + chr7_4:62390625-62390644 Msa1169390:CDS 50.0%
GACAGCAACTTCCAATGAGG+GGG + chr7_4:62390719-62390738 Msa1169390:CDS 50.0%
!! ATGGCTTTGATCCCCCTCAT+TGG - chr7_4:62390733-62390752 None:intergenic 50.0%
! GAGGGGGATCAAAGCCATTT+TGG + chr7_4:62390735-62390754 Msa1169390:CDS 50.0%
TGTGGTCACGAACTTAAGGC+GGG + chr7_4:62390882-62390901 Msa1169390:CDS 50.0%
TCACGAACTTAAGGCGGGTA+TGG + chr7_4:62390887-62390906 Msa1169390:CDS 50.0%
CACGAACTTAAGGCGGGTAT+GGG + chr7_4:62390888-62390907 Msa1169390:CDS 50.0%
TGGTCCAGGATTATCATCGC+TGG - chr7_4:62391144-62391163 None:intergenic 50.0%
AATCCTGGACCATCTTCGTC+TGG + chr7_4:62391152-62391171 Msa1169390:CDS 50.0%
!! GAGGGTTCTAGGAACACAAC+AGG + chr7_4:62391430-62391449 Msa1169390:CDS 50.0%
GGGAAAGGAAATGCAGGTTC+TGG + chr7_4:62391838-62391857 Msa1169390:intron 50.0%
GGGCAGTTCATGCCTTTAGT+TGG + chr7_4:62392316-62392335 Msa1169390:CDS 50.0%
GCTTAAAGCCTGGTCAAGTC+TGG + chr7_4:62392835-62392854 Msa1169390:intron 50.0%
GGGCACTCAAAAACAGTAGC+TGG - chr7_4:62393313-62393332 None:intergenic 50.0%
TTTCCGTCCCTTTACCGAGA+AGG + chr7_4:62393581-62393600 Msa1169390:CDS 50.0%
TGACCTTCTCGGTAAAGGGA+CGG - chr7_4:62393587-62393606 None:intergenic 50.0%
GTTCCTGACCTTCTCGGTAA+AGG - chr7_4:62393592-62393611 None:intergenic 50.0%
AACCCATTCTATGCGGGGTT+TGG + chr7_4:62393892-62393911 Msa1169390:CDS 50.0%
TGCCAAACCCCGCATAGAAT+GGG - chr7_4:62393897-62393916 None:intergenic 50.0%
TTGCCAAACCCCGCATAGAA+TGG - chr7_4:62393898-62393917 None:intergenic 50.0%
ATGTAGCCAACCCCACTTAG+TGG + chr7_4:62394453-62394472 Msa1169390:three_prime_UTR 50.0%
TGTAGCCAACCCCACTTAGT+GGG + chr7_4:62394454-62394473 Msa1169390:three_prime_UTR 50.0%
CTTATCCCACTAAGTGGGGT+TGG - chr7_4:62394462-62394481 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG + chr7_4:62394460-62394479 Msa1169390:three_prime_UTR 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7_4:62394468-62394487 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7_4:62394465-62394484 Msa1169390:three_prime_UTR 50.0%
! GAACTTTTCGGAGCACGCCT+TGG + chr7_4:62389503-62389522 Msa1169390:CDS 55.0%
GGAGCACGCCTTGGTATGTA+AGG + chr7_4:62389512-62389531 Msa1169390:CDS 55.0%
TCGGGGGCAATTCAGTTGAC+AGG + chr7_4:62389790-62389809 Msa1169390:CDS 55.0%
! CTTGCAGGGTTCTAATCCGG+AGG + chr7_4:62389951-62389970 Msa1169390:CDS 55.0%
GGGACCTATTTGTCACACGG+AGG + chr7_4:62390260-62390279 Msa1169390:CDS 55.0%
CACTCCAAGAACAAGAGGGG+CGG - chr7_4:62391048-62391067 None:intergenic 55.0%
CGCCACTCCAAGAACAAGAG+GGG - chr7_4:62391051-62391070 None:intergenic 55.0%
CCGCCACTCCAAGAACAAGA+GGG - chr7_4:62391052-62391071 None:intergenic 55.0%
CCCTCTTGTTCTTGGAGTGG+CGG + chr7_4:62391049-62391068 Msa1169390:CDS 55.0%
GACCATCTTCGTCTGGACGT+AGG + chr7_4:62391159-62391178 Msa1169390:CDS 55.0%
CACCTACGTCCAGACGAAGA+TGG - chr7_4:62391164-62391183 None:intergenic 55.0%
CATCTTCGTCTGGACGTAGG+TGG + chr7_4:62391162-62391181 Msa1169390:CDS 55.0%
GTTGAGCCATCTCCAACCTC+AGG + chr7_4:62391293-62391312 Msa1169390:CDS 55.0%
AGCCATCTCCAACCTCAGGT+AGG + chr7_4:62391297-62391316 Msa1169390:CDS 55.0%
AGCCTACCTGAGGTTGGAGA+TGG - chr7_4:62391302-62391321 None:intergenic 55.0%
GACTCAAGCCTACCTGAGGT+TGG - chr7_4:62391308-62391327 None:intergenic 55.0%
AGGAGACTCAAGCCTACCTG+AGG - chr7_4:62391312-62391331 None:intergenic 55.0%
AGATTGGAACCAGACTGGGG+TGG + chr7_4:62392342-62392361 Msa1169390:CDS 55.0%
GTCCCTTTACCGAGAAGGTC+AGG + chr7_4:62393586-62393605 Msa1169390:intron 55.0%
GGCAGGAGGACTTCAACTCT+TGG + chr7_4:62394274-62394293 Msa1169390:intron 55.0%
AAGGCCGCCCCTCTTGTTCT+TGG + chr7_4:62391041-62391060 Msa1169390:CDS 60.0%
CGCCCCTCTTGTTCTTGGAG+TGG + chr7_4:62391046-62391065 Msa1169390:CDS 60.0%
GCCGCCACTCCAAGAACAAG+AGG - chr7_4:62391053-62391072 None:intergenic 60.0%
CGTCCAGACGAAGATGGTCC+AGG - chr7_4:62391158-62391177 None:intergenic 60.0%
CTGGACGTAGGTGGAGACTC+TGG + chr7_4:62391171-62391190 Msa1169390:CDS 60.0%
AAAGCCTTGCCACCCCAGTC+TGG - chr7_4:62392354-62392373 None:intergenic 60.0%
! GAGTGCCCGTGCTATTGTCC+AGG + chr7_4:62393325-62393344 Msa1169390:CDS 60.0%
GCAACCTTCGAGCTGGACCC+CGG - chr7_4:62390229-62390248 None:intergenic 65.0%
! AGAGGGGCGGCCTTTTCCCA+TGG - chr7_4:62391035-62391054 None:intergenic 65.0%
GGAACCAGACTGGGGTGGCA+AGG + chr7_4:62392347-62392366 Msa1169390:CDS 65.0%
GCTTCCGGGGTCCAGCTCGA+AGG + chr7_4:62390222-62390241 Msa1169390:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62388812 62394625 62388812 ID=Msa1169390;Name=Msa1169390
chr7_4 mRNA 62388812 62394625 62388812 ID=Msa1169390-mRNA-1;Parent=Msa1169390;Name=Msa1169390-mRNA-1;_AED=0.08;_eAED=0.08;_QI=393|1|1|1|0.9|0.81|11|293|868
chr7_4 exon 62388812 62389032 62388812 ID=Msa1169390-mRNA-1:exon:19760;Parent=Msa1169390-mRNA-1
chr7_4 exon 62389216 62390762 62389216 ID=Msa1169390-mRNA-1:exon:19761;Parent=Msa1169390-mRNA-1
chr7_4 exon 62390865 62391451 62390865 ID=Msa1169390-mRNA-1:exon:19762;Parent=Msa1169390-mRNA-1
chr7_4 exon 62391549 62391622 62391549 ID=Msa1169390-mRNA-1:exon:19763;Parent=Msa1169390-mRNA-1
chr7_4 exon 62392303 62392387 62392303 ID=Msa1169390-mRNA-1:exon:19764;Parent=Msa1169390-mRNA-1
chr7_4 exon 62393299 62393385 62393299 ID=Msa1169390-mRNA-1:exon:19765;Parent=Msa1169390-mRNA-1
chr7_4 exon 62393530 62393602 62393530 ID=Msa1169390-mRNA-1:exon:19766;Parent=Msa1169390-mRNA-1
chr7_4 exon 62393709 62393752 62393709 ID=Msa1169390-mRNA-1:exon:19767;Parent=Msa1169390-mRNA-1
chr7_4 exon 62393862 62393990 62393862 ID=Msa1169390-mRNA-1:exon:19768;Parent=Msa1169390-mRNA-1
chr7_4 exon 62394089 62394187 62394089 ID=Msa1169390-mRNA-1:exon:19769;Parent=Msa1169390-mRNA-1
chr7_4 exon 62394279 62394625 62394279 ID=Msa1169390-mRNA-1:exon:19770;Parent=Msa1169390-mRNA-1
chr7_4 five_prime_UTR 62388812 62389032 62388812 ID=Msa1169390-mRNA-1:five_prime_utr;Parent=Msa1169390-mRNA-1
chr7_4 five_prime_UTR 62389216 62389387 62389216 ID=Msa1169390-mRNA-1:five_prime_utr;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62389388 62390762 62389388 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62390865 62391451 62390865 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62391549 62391622 62391549 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62392303 62392387 62392303 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62393299 62393385 62393299 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62393530 62393602 62393530 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62393709 62393752 62393709 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62393862 62393990 62393862 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62394089 62394187 62394089 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 CDS 62394279 62394332 62394279 ID=Msa1169390-mRNA-1:cds;Parent=Msa1169390-mRNA-1
chr7_4 three_prime_UTR 62394333 62394625 62394333 ID=Msa1169390-mRNA-1:three_prime_utr;Parent=Msa1169390-mRNA-1
Gene Sequence

>Msa1169390

ATGAATGTGGTGGGAAAATTTGGAACCTTGATAACTAAGGGTGTTTATTCAGTTGCTACCCCTTTTCACCCTTTTGGTGGTGCTGTTGATGTCATTGTTGTTCAGCAACAAGATGGAACTTTTCGGAGCACGCCTTGGTATGTAAGGTTTGGTAAATTTCAAGGTGTTCTCAAAGGTGCCGAGAAGATTGTGAAGATAAATGTTAATGGGGTTGAAGCGAATTTTCATATGTATCTTGATAATTCCGGGGAGGCTTATTTTGTAAAAGAGGTGGATGAGGATGATAAAAGTGTTGACTCAAATGTCCCTGTTGAAGGTGTTACTAACTCTGAGTTTACTTCTGAAGACGGTAGTGTTGAAATTGATATTACTGGTCATAGACTTGATCATAGCGTATCTGATTCGGGGGCAATTCAGTTGACAGGTGAAGATCATTCTTCAGTTTTGCCAGAACTTCAAAAGGTGGAATCCGATGTTGGTCGGACATTTTATGATTTTGAAGATGATCAACCAACAATTGAAGATTCGGCTGATTTGTCAGAATATGGAGAGAATGTTGTGGACTTGCAGGGTTCTAATCCGGAGGTGATCTTGGTTAGCGTTGACGGTCATATATTGACAGCCCCTATCTCAGAATTAGAGCCAACTGAGGAAAATTTGCAGTCACAAATTCCTCAATTTCACTTGGGACCAGGTGAAGGGACTGATTTCTACGAAGGCAATGAGGAGTTTAGTTCTGGTGAAAATGCAAGTGTTGCTGATTATGTTAGTAGGCCGGATGCTTCAACAGCTGATGTTCCTTCCAGTATTTATAGCTCTGATATCGGTAATAGTGCTTCCGGGGTCCAGCTCGAAGGTTGCCAAATAGAAAAGGGACCTATTTGTCACACGGAGGAAACTGGCACAGAAGAAGCTGCATCATGCATGAATTCGGAGAGTGTTTTCAAAAGTTGCTTGGACTTAAATGAACTTGCTCAGCAGGATGATTATGGCAATTTACAAGATGAAAGGTCCTCATTGGTGAATCAAAACTCAGCGGAGGAATCTAATGAAAATTGTTCAAATGTTGATGAAAATGCAAAAGAGAGCATTAAACAATTTAGAAATATTGGTGAGTTATCTCCCATCAGTGGTGCTACTTCTTCAGACGACAGTAATTCTACAAATTTAAAATCAGAATTTCAAGGGGTTGATAAAGATGCATCAGTGGAAGTTGACACTGGTTCTGGCATTCGTTCCGGTACGAATGATGTGGAATGGAATGATAGTAATAGTCAAGAAACCACTGTACTTGAAATTATTAGTGAGGAAGATAATATAACAGCACCTCAGACAGCAACTTCCAATGAGGGGGATCAAAGCCATTTTGGTTTGAAATTTGATATCTCACTTTGTGGTCACGAACTTAAGGCGGGTATGGGTTTTATCGCTGCTGCTGAAGTGTTTGAAGCACATCGAATATCTGCTGAGGAATTTAGAGTCTCTGCGCCATCTATAACTAAGAATAAAAATCTTGTTGTTAAGTTCAGAGAGAGTTATCTACCATGGGAAAAGGCCGCCCCTCTTGTTCTTGGAGTGGCGGCATTTGATTTAGACTTACCTGTTGCCCCTGAAGATACAATTCCTGTGGGTCAAGATGATAGGTTGAAGTCCAGCGATGATAATCCTGGACCATCTTCGTCTGGACGTAGGTGGAGACTCTGGCCTCTTGCTTTTCGAAAAGTGAAGACAGCTGAGCACAATAGTGGTGATGAATCAAGTGAGGATATATTTCTAGATTCCGAATCTGATTTGTTTGGCTCTGTTGAGCCATCTCCAACCTCAGGTAGGCTTGAGTCTCCTCGCAAGCAATTTGTTAGGACAAATGTTCCCTCTAATGAGATGATAGCATCATTGAATCTCAAAGATGGTCAAAATATGGTAACATTCAGTTTCTCTACGAGGGTTCTAGGAACACAACAGGTTGATGCTCATATATATTTATGGAAGTGGAACGCAAGAATTGTAATTTCAGATGTGGATGGAACTATTACCAAATCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGAAAAGATTGGAACCAGACTGGGGTGGCAAGGCTTTTCTCTGCCATTAAGGAAAATGGATACCAGCTACTGTTTTTGAGTGCCCGTGCTATTGTCCAGGCTTATATAACCAGGAACTTTTTGGTTAACCTGAAACAGGATGGAAAAACCTTACCAAAAGGACCTGTTGTTATTTCACCTGATGGATTATTTCCGTCCCTTTACCGAGAAGTAATAAAAAGAGCTCCTCATGAGTTCAAGATTGCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAACCCATTCTATGCGGGGTTTGGCAATAGAGACACAGATGAACTTAGTTACAGTAAAATAGGAATTCCAAAGGGAAAAATATTTATCATTAACCCTAAGGGTGAGGTGGCAATAAGTCATCGTATCGATGCAAAATCTTATACATCACTACACACACTCGTCAATGACATGTTCCCTCCTACGTCTTTGCTTGAACAGGAGGACTTCAACTCTTGGAATTATTGGAGAGTGCCTATGCCAGATATTGATTAG

Protein sequence

>Msa1169390

MNVVGKFGTLITKGVYSVATPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKGAEKIVKINVNGVEANFHMYLDNSGEAYFVKEVDEDDKSVDSNVPVEGVTNSEFTSEDGSVEIDITGHRLDHSVSDSGAIQLTGEDHSSVLPELQKVESDVGRTFYDFEDDQPTIEDSADLSEYGENVVDLQGSNPEVILVSVDGHILTAPISELEPTEENLQSQIPQFHLGPGEGTDFYEGNEEFSSGENASVADYVSRPDASTADVPSSIYSSDIGNSASGVQLEGCQIEKGPICHTEETGTEEAASCMNSESVFKSCLDLNELAQQDDYGNLQDERSSLVNQNSAEESNENCSNVDENAKESIKQFRNIGELSPISGATSSDDSNSTNLKSEFQGVDKDASVEVDTGSGIRSGTNDVEWNDSNSQETTVLEIISEEDNITAPQTATSNEGDQSHFGLKFDISLCGHELKAGMGFIAAAEVFEAHRISAEEFRVSAPSITKNKNLVVKFRESYLPWEKAAPLVLGVAAFDLDLPVAPEDTIPVGQDDRLKSSDDNPGPSSSGRRWRLWPLAFRKVKTAEHNSGDESSEDIFLDSESDLFGSVEPSPTSGRLESPRKQFVRTNVPSNEMIASLNLKDGQNMVTFSFSTRVLGTQQVDAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGKDWNQTGVARLFSAIKENGYQLLFLSARAIVQAYITRNFLVNLKQDGKTLPKGPVVISPDGLFPSLYREVIKRAPHEFKIACLEDIKRLFPSDYNPFYAGFGNRDTDELSYSKIGIPKGKIFIINPKGEVAISHRIDAKSYTSLHTLVNDMFPPTSLLEQEDFNSWNYWRVPMPDID*