AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078540 MtrunA17_Chr7g0263401 96.544 868 29 1 1 868 1 867 0.0 1711
Msa1078540 MtrunA17_Chr1g0181991 61.257 955 253 21 1 868 1 925 0.0 1063
Msa1078540 MtrunA17_Chr3g0133821 66.561 314 87 3 559 863 523 827 2.84e-139 434
Msa1078540 MtrunA17_Chr3g0133821 70.526 95 28 0 1 95 1 95 9.52e-40 158
Msa1078540 MtrunA17_Chr1g0153651 74.219 256 64 2 609 863 261 515 2.32e-132 405
Msa1078540 MtrunA17_Chr1g0153651 58.242 91 35 2 1 88 1 91 6.29e-26 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078540 AT3G09560.3 53.433 932 342 21 1 868 1 904 0.0 894
Msa1078540 AT3G09560.1 53.433 932 342 21 1 868 1 904 0.0 894
Msa1078540 AT3G09560.2 53.433 932 342 21 1 868 1 904 0.0 894
Msa1078540 AT3G09560.4 53.433 932 342 21 1 868 1 904 0.0 894
Msa1078540 AT5G42870.1 58.596 413 141 7 461 867 541 929 8.68e-161 493
Msa1078540 AT5G42870.1 60.215 93 37 0 1 93 1 93 1.96e-33 139
Msa1078540 AT5G42870.2 57.627 413 140 8 461 867 541 924 3.52e-155 479
Msa1078540 AT5G42870.2 60.215 93 37 0 1 93 1 93 1.74e-33 139
Msa1078540 AT5G42870.3 57.967 364 123 7 461 818 541 880 4.99e-134 422
Msa1078540 AT5G42870.3 60.215 93 37 0 1 93 1 93 1.60e-33 139

Find 247 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAAAAGTTCCAGAATTT+TGG 0.130476 7_2:+77504508 None:intergenic
TAGCATTTCCGTTAACATTT+TGG 0.146903 7_2:+77499335 None:intergenic
GTTCTATCATAAAACATATT+TGG 0.187069 7_2:+77499447 None:intergenic
TGCTTTCAGATCTGATGTTT+TGG 0.192008 7_2:-77501550 Msa1078540:intron
ACTTCAACTCTTGGAATTAT+TGG 0.208357 7_2:-77499574 Msa1078540:CDS
TTAGGGGTTGGAATGGAATT+TGG 0.209118 7_2:+77504966 None:intergenic
TTGATGCTCATATATATTTA+TGG 0.222189 7_2:-77502294 Msa1078540:CDS
ATTAAACAATTTAGAAATAT+TGG 0.228590 7_2:-77503367 Msa1078540:CDS
ATGAATGTGGTGGGAAAATT+TGG 0.229388 7_2:-77504456 Msa1078540:CDS
TTTGTTTAAATACCTGTTTC+AGG 0.232511 7_2:+77500469 None:intergenic
CATATGTATCTTGATAATTC+CGG 0.248335 7_2:-77504231 Msa1078540:CDS
TACACGGATTCTTTGGTATT+AGG 0.256009 7_2:-77499497 Msa1078540:three_prime_UTR
TCGGCTGATTTGTCAGAATA+TGG 0.264818 7_2:-77503931 Msa1078540:CDS
CCCTGATGAGGTTGAAATTC+TGG 0.275882 7_2:-77505046 None:intergenic
GAACTTAGTTACAGTAAAAT+AGG 0.277495 7_2:-77499926 Msa1078540:CDS
AGTTTCTCTACGAGGGTTCT+AGG 0.286566 7_2:-77502425 Msa1078540:CDS
TTGTTGTGGGCTTACAAGTT+AGG 0.289505 7_2:+77504948 None:intergenic
TTGTTGTAATTGTTTGGTAT+TGG 0.311081 7_2:-77499366 Msa1078540:three_prime_UTR
AGTCCTTACTCAAACCAAAA+TGG 0.312761 7_2:+77503095 None:intergenic
TCTCAAAGATGGTCAAAATA+TGG 0.321607 7_2:-77502456 Msa1078540:CDS
CAACTAAATAGATACCTTAA+TGG 0.323620 7_2:+77501464 None:intergenic
TTGTGAAGATAAATGTTAAT+GGG 0.325693 7_2:-77504269 Msa1078540:CDS
CTTTCTTGCAGTGCTTTGAA+TGG 0.327500 7_2:+77504897 None:intergenic
AGTGTTGAAATTGATATTAC+TGG 0.332390 7_2:-77504105 Msa1078540:CDS
AAGGCCGCCCCTCTTGTTCT+TGG 0.341180 7_2:-77502803 Msa1078540:CDS
TGCCTTTAGTTGGAAAAGAT+TGG 0.344724 7_2:-77501518 Msa1078540:CDS
TGTTGTAATTGTTTGGTATT+GGG 0.346409 7_2:-77499365 Msa1078540:three_prime_UTR
AACCCATTCTATGCGGGGTT+TGG 0.347079 7_2:-77499965 Msa1078540:CDS
CTTGCTCAGCAGGATGATTA+TGG 0.349602 7_2:-77503487 Msa1078540:CDS
GATTCCGAATCTGATTTGTT+TGG 0.352962 7_2:-77502578 Msa1078540:CDS
GATCATAGCGTATCTGATTC+GGG 0.353087 7_2:-77504072 Msa1078540:CDS
GAGGTTGAAATTCTGGTATT+AGG 0.354716 7_2:-77505039 None:intergenic
TGTTGTGGGCTTACAAGTTA+GGG 0.358566 7_2:+77504949 None:intergenic
GATATCGGTAATAGTGCTTC+CGG 0.358681 7_2:-77503637 Msa1078540:CDS
GAAATAACAACAGGTCCTTT+TGG 0.363480 7_2:+77500300 None:intergenic
TTAAAAGTTCCTGACCTTCT+CGG 0.364505 7_2:+77500250 None:intergenic
AAATTCAGATAATCGATTCT+TGG 0.365245 7_2:-77504597 Msa1078540:five_prime_UTR
ATATGTATCTTGATAATTCC+GGG 0.366297 7_2:-77504230 Msa1078540:CDS
ATTTATCTTCACAATCTTCT+CGG 0.372459 7_2:+77504278 None:intergenic
GGCAATGAGGAGTTTAGTTC+TGG 0.375234 7_2:-77503739 Msa1078540:CDS
CTGAATTTCTTGATTAGTTA+CGG 0.377236 7_2:+77504612 None:intergenic
ATTGTGAAGATAAATGTTAA+TGG 0.378629 7_2:-77504270 Msa1078540:CDS
TGGTTGTTGTTGTAATTGTT+TGG 0.380204 7_2:-77499372 Msa1078540:three_prime_UTR
TGATCATAGCGTATCTGATT+CGG 0.384025 7_2:-77504073 Msa1078540:CDS
TGATGCTATCATCTCATTAG+AGG 0.387912 7_2:+77502484 None:intergenic
GTGGAAGTTGACACTGGTTC+TGG 0.389318 7_2:-77503250 Msa1078540:CDS
CCCACAGGAATTGTATCTTC+AGG 0.392472 7_2:+77502746 None:intergenic
ACATAGAACTAATCAATATC+TGG 0.393486 7_2:+77499539 None:intergenic
ATTTGTCACACGGAGGAAAC+TGG 0.394153 7_2:-77503577 Msa1078540:CDS
GATATCAGAGCTATAAATAC+TGG 0.396300 7_2:+77503654 None:intergenic
GAATTTGATATCTCACTTTG+TGG 0.396349 7_2:-77502980 Msa1078540:CDS
GTTGGCTCTAATTCTGAGAT+AGG 0.398990 7_2:+77503832 None:intergenic
GTTTCCTCCGTGTGACAAAT+AGG 0.403271 7_2:+77503580 None:intergenic
GAGTTAGTAACACCTTCAAC+AGG 0.404417 7_2:+77504150 None:intergenic
GTAAGGTTTGGTAAATTTCA+AGG 0.404862 7_2:-77504315 Msa1078540:CDS
TTCTAATCCGGAGGTGATCT+TGG 0.405144 7_2:-77503884 Msa1078540:CDS
AATTCAGATAATCGATTCTT+GGG 0.407555 7_2:-77504596 Msa1078540:five_prime_UTR
TCCTACGTCTTTGCTTGAAC+AGG 0.407811 7_2:-77499691 Msa1078540:intron
ACTTTGTGGTCACGAACTTA+AGG 0.409783 7_2:-77502966 Msa1078540:CDS
CACCACCAAAAGGGTGAAAA+GGG 0.410706 7_2:+77504397 None:intergenic
TTGCCAAACCCCGCATAGAA+TGG 0.414444 7_2:+77499962 None:intergenic
CTATTAATTAAAAGTTTCTT+CGG 0.414606 7_2:-77504545 Msa1078540:five_prime_UTR
AGTATTTATAGCTCTGATAT+CGG 0.417244 7_2:-77503652 Msa1078540:CDS
ATATCGGTAATAGTGCTTCC+GGG 0.417611 7_2:-77503636 Msa1078540:CDS
ATTTGGAACCTTGATAACTA+AGG 0.420387 7_2:-77504439 Msa1078540:CDS
AGAGAATGTTGTGGACTTGC+AGG 0.425386 7_2:-77503908 Msa1078540:CDS
TCACGAACTTAAGGCGGGTA+TGG 0.425429 7_2:-77502957 Msa1078540:CDS
AGCTGCATCATGCATGAATT+CGG 0.430128 7_2:-77503545 Msa1078540:CDS
GAGTGCCCGTGCTATTGTCC+AGG 0.431287 7_2:-77500520 Msa1078540:CDS
CTTAAATGAACTTGCTCAGC+AGG 0.432746 7_2:-77503497 Msa1078540:CDS
GGCAGGAGGACTTCAACTCT+TGG 0.432981 7_2:-77499583 Msa1078540:intron
CTCATATATATTTATGGAAG+TGG 0.433128 7_2:-77502288 Msa1078540:CDS
GCACCACCAAAAGGGTGAAA+AGG 0.435072 7_2:+77504396 None:intergenic
CCTCAATTTCACTTGGGACC+AGG 0.436900 7_2:-77503784 Msa1078540:CDS
CGAAGGTTGCCAAATAGAAA+AGG 0.437602 7_2:-77503605 Msa1078540:CDS
ATTGTATCTTCAGGGGCAAC+AGG 0.437634 7_2:+77502755 None:intergenic
GGGCAGTTCATGCCTTTAGT+TGG 0.438033 7_2:-77501528 Msa1078540:CDS
CTCCTCGCAAGCAATTTGTT+AGG 0.441589 7_2:-77502517 Msa1078540:CDS
GTGATCTTGGTTAGCGTTGA+CGG 0.444536 7_2:-77503871 Msa1078540:CDS
TTCCTGACCTTCTCGGTAAA+GGG 0.446468 7_2:+77500257 None:intergenic
ACAAGATGAAAGGTCCTCAT+TGG 0.448766 7_2:-77503458 Msa1078540:CDS
CCTGTTGTTATTTCACCTGA+TGG 0.449780 7_2:-77500291 Msa1078540:CDS
GTTCCTGACCTTCTCGGTAA+AGG 0.453457 7_2:+77500256 None:intergenic
TGCTATATGTTCGAACTACT+TGG 0.453590 7_2:-77499317 Msa1078540:three_prime_UTR
GGAGCACGCCTTGGTATGTA+AGG 0.453862 7_2:-77504332 Msa1078540:CDS
TCAGCCGAATCTTCAATTGT+TGG 0.454790 7_2:+77503946 None:intergenic
ATAAACACCCTTAGTTATCA+AGG 0.455833 7_2:+77504431 None:intergenic
GACTCAAATGTCCCTGTTGA+AGG 0.461533 7_2:-77504162 Msa1078540:CDS
GGAAAAGATTGGAACCAGAC+TGG 0.467033 7_2:-77501507 Msa1078540:CDS
ACTGGTTCTGGCATTCGTTC+CGG 0.467940 7_2:-77503238 Msa1078540:CDS
ACGCCTTGGTATGTAAGGTT+TGG 0.469262 7_2:-77504327 Msa1078540:CDS
GTGTTGCTGATTATGTTAGT+AGG 0.469363 7_2:-77503705 Msa1078540:CDS
TCAACCAACAATTGAAGATT+CGG 0.477254 7_2:-77503950 Msa1078540:CDS
GGACTTGCAGGGTTCTAATC+CGG 0.477849 7_2:-77503896 Msa1078540:CDS
AAGTCCAGCGATGATAATCC+TGG 0.480068 7_2:-77502707 Msa1078540:CDS
CAACCCCACTTAGTGGGATA+AGG 0.480548 7_2:-77499397 Msa1078540:three_prime_UTR
TTGGCTCTAATTCTGAGATA+GGG 0.481968 7_2:+77503833 None:intergenic
CCACAGGAATTGTATCTTCA+GGG 0.482375 7_2:+77502747 None:intergenic
CTATTTGGCAACCTTCGAGC+TGG 0.483317 7_2:+77503611 None:intergenic
ACATCAACAGCACCACCAAA+AGG 0.484992 7_2:+77504387 None:intergenic
CACGAACTTAAGGCGGGTAT+GGG 0.485013 7_2:-77502956 Msa1078540:CDS
GCAACCTTCGAGCTGGACCC+CGG 0.485525 7_2:+77503618 None:intergenic
TGGGCTTACAAGTTAGGGGT+TGG 0.486544 7_2:+77504954 None:intergenic
GATTATAACCCATTCTATGC+GGG 0.488504 7_2:-77499971 Msa1078540:CDS
GAAAAGATTGGAACCAGACT+GGG 0.489336 7_2:-77501506 Msa1078540:CDS
ACATCAGCTGTTGAAGCATC+CGG 0.489891 7_2:+77503682 None:intergenic
AGAGCCAAACAAATCAGATT+CGG 0.494261 7_2:+77502574 None:intergenic
CGTCCAGACGAAGATGGTCC+AGG 0.496672 7_2:+77502689 None:intergenic
TTCCTGTGGGTCAAGATGAT+AGG 0.496718 7_2:-77502733 Msa1078540:CDS
CCACTTAGTGGGATAAGGCT+TGG 0.499202 7_2:-77499392 Msa1078540:three_prime_UTR
CGCCCCTCTTGTTCTTGGAG+TGG 0.499616 7_2:-77502798 Msa1078540:CDS
AATATTTATCATTAACCCTA+AGG 0.500228 7_2:-77499888 Msa1078540:intron
AATCCTGGACCATCTTCGTC+TGG 0.500733 7_2:-77502692 Msa1078540:CDS
GCGGCTGTCCAAAATGTTAA+CGG 0.501411 7_2:-77499343 Msa1078540:three_prime_UTR
GAGTTATCTACCATGGGAAA+AGG 0.503668 7_2:-77502822 Msa1078540:CDS
TGCCAAACCCCGCATAGAAT+GGG 0.504754 7_2:+77499963 None:intergenic
ATTTAAAATCAGAATTTCAA+GGG 0.506367 7_2:-77503291 Msa1078540:CDS
ATGTAGCCAACCCCACTTAG+TGG 0.507195 7_2:-77499404 Msa1078540:three_prime_UTR
AGTTCCTGGTTATATAAGCC+TGG 0.510579 7_2:+77500502 None:intergenic
GAGGGTTCTAGGAACACAAC+AGG 0.510904 7_2:-77502414 Msa1078540:intron
CCATCAGGTGAAATAACAAC+AGG 0.512658 7_2:+77500291 None:intergenic
CCTGGTCCCAAGTGAAATTG+AGG 0.512878 7_2:+77503784 None:intergenic
AATTTAAAATCAGAATTTCA+AGG 0.515613 7_2:-77503292 Msa1078540:CDS
AAAGCCTTGCCACCCCAGTC+TGG 0.517161 7_2:+77501493 None:intergenic
ATTGTTGTTCAGCAACAAGA+TGG 0.518652 7_2:-77504363 Msa1078540:CDS
AGGGACGGAAATAATCCATC+AGG 0.519561 7_2:+77500276 None:intergenic
TAGAATGGGTTATAATCAGA+AGG 0.527886 7_2:+77499977 None:intergenic
GTTGAGCCATCTCCAACCTC+AGG 0.531698 7_2:-77502551 Msa1078540:CDS
ACAAATTCCTCAATTTCACT+TGG 0.532985 7_2:-77503791 Msa1078540:CDS
TGAAGAAGTAGCACCACTGA+TGG 0.536057 7_2:+77503333 None:intergenic
CTTATCCCACTAAGTGGGGT+TGG 0.538908 7_2:+77499398 None:intergenic
ATTGTAATTTCAGATGTGGA+TGG 0.540092 7_2:-77502256 Msa1078540:CDS
TTTCACTTGGGACCAGGTGA+AGG 0.540389 7_2:-77503778 Msa1078540:CDS
TTTGGAACCTTGATAACTAA+GGG 0.543072 7_2:-77504438 Msa1078540:CDS
GACTCAAGCCTACCTGAGGT+TGG 0.546268 7_2:+77502539 None:intergenic
CCCTCTTGTTCTTGGAGTGG+CGG 0.548536 7_2:-77502795 Msa1078540:CDS
CTGGACGTAGGTGGAGACTC+TGG 0.548685 7_2:-77502673 Msa1078540:CDS
AAGACAGCTGAGCACAATAG+TGG 0.548705 7_2:-77502629 Msa1078540:CDS
AGCCTACCTGAGGTTGGAGA+TGG 0.549317 7_2:+77502545 None:intergenic
TTTCCGTCCCTTTACCGAGA+AGG 0.550428 7_2:-77500264 Msa1078540:intron
ATGGCAATTTACAAGATGAA+AGG 0.551334 7_2:-77503468 Msa1078540:CDS
TGGTCCAGGATTATCATCGC+TGG 0.553435 7_2:+77502703 None:intergenic
CAAATTCCTCAATTTCACTT+GGG 0.554755 7_2:-77503790 Msa1078540:CDS
CCAAGCCTTATCCCACTAAG+TGG 0.555227 7_2:+77499392 None:intergenic
CATCAACAGCACCACCAAAA+GGG 0.556201 7_2:+77504388 None:intergenic
TTTGCCAGAACTTCAAAAGG+TGG 0.556741 7_2:-77504013 Msa1078540:CDS
AACCTATCATCTTGACCCAC+AGG 0.558319 7_2:+77502731 None:intergenic
GAAGGTTGCCAAATAGAAAA+GGG 0.559450 7_2:-77503604 Msa1078540:CDS
GTTGTGGGCTTACAAGTTAG+GGG 0.560528 7_2:+77504950 None:intergenic
TGCTGATTATGTTAGTAGGC+CGG 0.561183 7_2:-77503701 Msa1078540:CDS
CCATTCCACATCATTCGTAC+CGG 0.561582 7_2:+77503219 None:intergenic
CCCTGAAGATACAATTCCTG+TGG 0.563260 7_2:-77502747 Msa1078540:CDS
AACATTCAGTTTCTCTACGA+GGG 0.564099 7_2:-77502432 Msa1078540:CDS
CAAGCCTTATCCCACTAAGT+GGG 0.565284 7_2:+77499393 None:intergenic
GGAACCAGACTGGGGTGGCA+AGG 0.569774 7_2:-77501497 Msa1078540:CDS
TTACAAGTTAGGGGTTGGAA+TGG 0.571871 7_2:+77504959 None:intergenic
GCATCATTGAATCTCAAAGA+TGG 0.573195 7_2:-77502467 Msa1078540:CDS
GTCCTAACAAATTGCTTGCG+AGG 0.573977 7_2:+77502515 None:intergenic
ACTAATAATTTCAAGTACAG+TGG 0.575677 7_2:+77503174 None:intergenic
TTCACTTGGGACCAGGTGAA+GGG 0.578350 7_2:-77503777 Msa1078540:CDS
ATAAAATGTCCGACCAACAT+CGG 0.579316 7_2:+77503987 None:intergenic
ACGCTAACCAAGATCACCTC+CGG 0.579858 7_2:+77503877 None:intergenic
GATGCTATCATCTCATTAGA+GGG 0.581965 7_2:+77502485 None:intergenic
TCATTGGAAGTTGCTGTCTG+AGG 0.582855 7_2:+77503130 None:intergenic
CAAAAGGTGGAATCCGATGT+TGG 0.583418 7_2:-77504000 Msa1078540:CDS
TCTGAGTTTACTTCTGAAGA+CGG 0.583454 7_2:-77504129 Msa1078540:CDS
CAGAGAGAGTTATCTACCAT+GGG 0.583701 7_2:-77502828 Msa1078540:CDS
AAATTTCAAGGTGTTCTCAA+AGG 0.584146 7_2:-77504303 Msa1078540:CDS
TAGAAATCAGTCCCTTCACC+TGG 0.588186 7_2:+77503766 None:intergenic
AAGAATTGTAATTTCAGATG+TGG 0.588816 7_2:-77502260 Msa1078540:CDS
CCGGTACGAATGATGTGGAA+TGG 0.589277 7_2:-77503219 Msa1078540:CDS
TGTTCAAGCAAAGACGTAGG+AGG 0.592284 7_2:+77499693 None:intergenic
TGGCTCTAATTCTGAGATAG+GGG 0.597023 7_2:+77503834 None:intergenic
TCAGAGAGAGTTATCTACCA+TGG 0.597194 7_2:-77502829 Msa1078540:CDS
CCGCCACTCCAAGAACAAGA+GGG 0.598140 7_2:+77502795 None:intergenic
CAGACAGCAACTTCCAATGA+GGG 0.598692 7_2:-77503127 Msa1078540:CDS
TGTACTTGAAATTATTAGTG+AGG 0.600231 7_2:-77503170 Msa1078540:CDS
TATAAGCCTGGACAATAGCA+CGG 0.602894 7_2:+77500514 None:intergenic
CACCTACGTCCAGACGAAGA+TGG 0.604562 7_2:+77502683 None:intergenic
GCCGCCACTCCAAGAACAAG+AGG 0.605405 7_2:+77502794 None:intergenic
AGTAAGTCACTTTACAAGCA+AGG 0.605483 7_2:+77499282 None:intergenic
GAAGAAGTAGCACCACTGAT+GGG 0.605725 7_2:+77503334 None:intergenic
TTTAAAATCAGAATTTCAAG+GGG 0.607929 7_2:-77503290 Msa1078540:CDS
GAGAATGTTGTGGACTTGCA+GGG 0.608699 7_2:-77503907 Msa1078540:CDS
AGTAAAATAGGAATTCCAAA+GGG 0.609251 7_2:-77499914 Msa1078540:CDS
TGTGGTCACGAACTTAAGGC+GGG 0.610181 7_2:-77502962 Msa1078540:CDS
CAGTAAAATAGGAATTCCAA+AGG 0.610652 7_2:-77499915 Msa1078540:CDS
TGTAGCCAACCCCACTTAGT+GGG 0.611984 7_2:-77499403 Msa1078540:three_prime_UTR
ATTATAACCCATTCTATGCG+GGG 0.612931 7_2:-77499970 Msa1078540:CDS
GTTCAAGATTGCTTGTCTAG+AGG 0.613173 7_2:-77500126 Msa1078540:intron
TTACCAAACCTTACATACCA+AGG 0.615393 7_2:+77504324 None:intergenic
AGGTGGAATCCGATGTTGGT+CGG 0.615446 7_2:-77503996 Msa1078540:CDS
TTGTGGTCACGAACTTAAGG+CGG 0.615928 7_2:-77502963 Msa1078540:CDS
ATAAGCCTGGACAATAGCAC+GGG 0.616334 7_2:+77500515 None:intergenic
CACTCCAAGAACAAGAGGGG+CGG 0.618301 7_2:+77502799 None:intergenic
TGTGAAGATAAATGTTAATG+GGG 0.619954 7_2:-77504268 Msa1078540:CDS
TCGTTCCGGTACGAATGATG+TGG 0.621957 7_2:-77503224 Msa1078540:CDS
AACTAATCAATATCTGGCAT+AGG 0.627013 7_2:+77499545 None:intergenic
CAAGCAATCTTGAACTCATG+AGG 0.627073 7_2:+77500134 None:intergenic
CGCCACTCCAAGAACAAGAG+GGG 0.627600 7_2:+77502796 None:intergenic
CATCTTCGTCTGGACGTAGG+TGG 0.627651 7_2:-77502682 Msa1078540:CDS
AAAGAAAGAATGAATGTGGT+GGG 0.628462 7_2:-77504465 Msa1078540:exon
GCATCAGTGGAAGTTGACAC+TGG 0.631154 7_2:-77503256 Msa1078540:CDS
TGACCTTCTCGGTAAAGGGA+CGG 0.631465 7_2:+77500261 None:intergenic
TCAGACAGCAACTTCCAATG+AGG 0.632178 7_2:-77503128 Msa1078540:CDS
TTGTCCAGGCTTATATAACC+AGG 0.632877 7_2:-77500506 Msa1078540:CDS
ATCATAGCGTATCTGATTCG+GGG 0.633177 7_2:-77504071 Msa1078540:CDS
GACAGCAACTTCCAATGAGG+GGG 0.633635 7_2:-77503125 Msa1078540:CDS
TATCGGTAATAGTGCTTCCG+GGG 0.633679 7_2:-77503635 Msa1078540:CDS
TATGTATCTTGATAATTCCG+GGG 0.634354 7_2:-77504229 Msa1078540:CDS
GAAAGAAAGAATGAATGTGG+TGG 0.636069 7_2:-77504466 Msa1078540:exon
GGTGAGTTATCTCCCATCAG+TGG 0.640463 7_2:-77503346 Msa1078540:CDS
AGAATGGGTTATAATCAGAA+GGG 0.641875 7_2:+77499978 None:intergenic
GAAGGGACTGATTTCTACGA+AGG 0.643261 7_2:-77503760 Msa1078540:CDS
GGTTGATAAAGATGCATCAG+TGG 0.645734 7_2:-77503269 Msa1078540:CDS
ACAGATTGAGAAAACGAATG+AGG 0.646242 7_2:+77504835 None:intergenic
TCAGAGCTATAAATACTGGA+AGG 0.646669 7_2:+77503658 None:intergenic
GTTCAAGCAAAGACGTAGGA+GGG 0.648088 7_2:+77499694 None:intergenic
TGATTATAACCCATTCTATG+CGG 0.650443 7_2:-77499972 Msa1078540:CDS
CCTGAAGATACAATTCCTGT+GGG 0.650890 7_2:-77502746 Msa1078540:CDS
CACAGGAATTGTATCTTCAG+GGG 0.660656 7_2:+77502748 None:intergenic
ACTGAAAGAAAGAATGAATG+TGG 0.662863 7_2:-77504469 Msa1078540:exon
TGAACACTAATAGGGTGAGG+TGG 0.663341 7_2:-77499781 Msa1078540:intron
CTTGCAGGGTTCTAATCCGG+AGG 0.664062 7_2:-77503893 Msa1078540:CDS
AGACAGCAACTTCCAATGAG+GGG 0.667001 7_2:-77503126 Msa1078540:CDS
TCATAGCGTATCTGATTCGG+GGG 0.670402 7_2:-77504070 Msa1078540:CDS
AAGCCTTATCCCACTAAGTG+GGG 0.671687 7_2:+77499394 None:intergenic
ACCACCAAAAGGGTGAAAAG+GGG 0.671766 7_2:+77504398 None:intergenic
AGCACATCGAATATCTGCTG+AGG 0.674065 7_2:-77502906 Msa1078540:CDS
GGTGAATCAAAACTCAGCGG+AGG 0.674797 7_2:-77503437 Msa1078540:CDS
AGTTAGTAACACCTTCAACA+GGG 0.677470 7_2:+77504151 None:intergenic
AGGAGACTCAAGCCTACCTG+AGG 0.678173 7_2:+77502535 None:intergenic
TAGTGGTGATGAATCAAGTG+AGG 0.678368 7_2:-77502612 Msa1078540:CDS
GTATCTTGATAATTCCGGGG+AGG 0.679242 7_2:-77504226 Msa1078540:CDS
AGAATATGGAGAGAATGTTG+TGG 0.680826 7_2:-77503917 Msa1078540:CDS
TGATTTCTACGAAGGCAATG+AGG 0.683113 7_2:-77503752 Msa1078540:CDS
TAACATTCAGTTTCTCTACG+AGG 0.686208 7_2:-77502433 Msa1078540:CDS
GACCATCTTCGTCTGGACGT+AGG 0.688284 7_2:-77502685 Msa1078540:CDS
CTCAGAATTAGAGCCAACTG+AGG 0.700989 7_2:-77503827 Msa1078540:CDS
AAAGGGACCTATTTGTCACA+CGG 0.702150 7_2:-77503587 Msa1078540:CDS
AGCCATCTCCAACCTCAGGT+AGG 0.703115 7_2:-77502547 Msa1078540:CDS
TGTAATTGTTTGGTATTGGG+CGG 0.703952 7_2:-77499362 Msa1078540:three_prime_UTR
AGATTGGAACCAGACTGGGG+TGG 0.726345 7_2:-77501502 Msa1078540:CDS
AAAAGATTGGAACCAGACTG+GGG 0.727153 7_2:-77501505 Msa1078540:CDS
ACCTGTTCAAGCAAAGACGT+AGG 0.741164 7_2:+77499690 None:intergenic
ATTGGTGAATCAAAACTCAG+CGG 0.751587 7_2:-77503440 Msa1078540:CDS
GGGACCTATTTGTCACACGG+AGG 0.770332 7_2:-77503584 Msa1078540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAACAATTTAGAAATAT+TGG - chr7_2:77500922-77500941 Msa1078540:intron 10.0%
!!! ATATTTGTTTTTTTCTTAAA+AGG - chr7_2:77502576-77502595 Msa1078540:CDS 10.0%
!! CTATTAATTAAAAGTTTCTT+CGG - chr7_2:77499744-77499763 Msa1078540:CDS 15.0%
!!! AATTTAAAATCAGAATTTCA+AGG - chr7_2:77500997-77501016 Msa1078540:intron 15.0%
!!! ATTTAAAATCAGAATTTCAA+GGG - chr7_2:77500998-77501017 Msa1078540:intron 15.0%
!! AAGAAAATCAAATAAACAAT+TGG + chr7_2:77501276-77501295 None:intergenic 15.0%
!!! TTTTTATTCTTAGTTATAGA+TGG + chr7_2:77501426-77501445 None:intergenic 15.0%
!!! GATTCATTTTATAAAATAAG+GGG + chr7_2:77502191-77502210 None:intergenic 15.0%
!!! GGATTCATTTTATAAAATAA+GGG + chr7_2:77502192-77502211 None:intergenic 15.0%
!! TTTACTTCATAAATGAAAAT+AGG - chr7_2:77502262-77502281 Msa1078540:CDS 15.0%
!! TTACTTCATAAATGAAAATA+GGG - chr7_2:77502263-77502282 Msa1078540:CDS 15.0%
!! ATAAAATTCAATGAAACAAT+AGG + chr7_2:77503681-77503700 None:intergenic 15.0%
!!! ATATTTTAACAATGATAACT+GGG + chr7_2:77503912-77503931 None:intergenic 15.0%
!!! AATATTTTAACAATGATAAC+TGG + chr7_2:77503913-77503932 None:intergenic 15.0%
!!! AATTTTGTCTTATTTACTTA+TGG - chr7_2:77504115-77504134 Msa1078540:CDS 15.0%
!!! ATTGAATTGAATTTTGTTGT+GGG + chr7_2:77499357-77499376 None:intergenic 20.0%
!!! AATTGAATTGAATTTTGTTG+TGG + chr7_2:77499358-77499377 None:intergenic 20.0%
!!! TTTTTAAGTTGAATTTGACT+TGG - chr7_2:77499577-77499596 Msa1078540:CDS 20.0%
!! ATTGTGAAGATAAATGTTAA+TGG - chr7_2:77500019-77500038 Msa1078540:intron 20.0%
!! TTGTGAAGATAAATGTTAAT+GGG - chr7_2:77500020-77500039 Msa1078540:intron 20.0%
!!! TTTAAAATCAGAATTTCAAG+GGG - chr7_2:77500999-77501018 Msa1078540:intron 20.0%
!!! AATTGGCTTAATCAAATAAT+AGG + chr7_2:77501259-77501278 None:intergenic 20.0%
!! CAAAGTATATATAGTGATAT+GGG + chr7_2:77501927-77501946 None:intergenic 20.0%
!!! TGAACTTTTAATTTCATAAC+AGG - chr7_2:77501972-77501991 Msa1078540:intron 20.0%
!! TTGATGCTCATATATATTTA+TGG - chr7_2:77501995-77502014 Msa1078540:intron 20.0%
!!! GGGATTCATTTTATAAAATA+AGG + chr7_2:77502193-77502212 None:intergenic 20.0%
!!! TTTGTCTTTTAGTAATCTTA+TGG - chr7_2:77502306-77502325 Msa1078540:intron 20.0%
!!! TCTTTTCAAAATTTAGACAA+TGG + chr7_2:77502429-77502448 None:intergenic 20.0%
!!! TTTTCTTCATTATCTTTTTC+TGG - chr7_2:77502453-77502472 Msa1078540:CDS 20.0%
!!! TATGAATATGTGCATTTTTA+AGG + chr7_2:77502704-77502723 None:intergenic 20.0%
!!! CTTAATGGTATTCTTTTTTA+CGG - chr7_2:77503098-77503117 Msa1078540:intron 20.0%
!!! ATGATAAATATTTTTCCCTT+TGG + chr7_2:77504393-77504412 None:intergenic 20.0%
!! AATATTTATCATTAACCCTA+AGG - chr7_2:77504401-77504420 Msa1078540:CDS 20.0%
!! ACTTTCAAAACTAACAAATT+TGG - chr7_2:77504665-77504684 Msa1078540:intron 20.0%
!!! TTTCAGTTACATTTTTTACA+CGG - chr7_2:77504776-77504795 Msa1078540:intron 20.0%
!! GTTCTATCATAAAACATATT+TGG + chr7_2:77504845-77504864 None:intergenic 20.0%
!! AAGATTTAAGTAACGTTTTG+AGG + chr7_2:77499620-77499639 None:intergenic 25.0%
! TTGCAAGAAAAGAAAAGAAA+AGG + chr7_2:77499644-77499663 None:intergenic 25.0%
!! CTGAATTTCTTGATTAGTTA+CGG + chr7_2:77499680-77499699 None:intergenic 25.0%
!! AAATTCAGATAATCGATTCT+TGG - chr7_2:77499692-77499711 Msa1078540:CDS 25.0%
!! AATTCAGATAATCGATTCTT+GGG - chr7_2:77499693-77499712 Msa1078540:CDS 25.0%
!! TAGAAAAGTTCCAGAATTTT+GGG + chr7_2:77499783-77499802 None:intergenic 25.0%
!! ATAGAAAAGTTCCAGAATTT+TGG + chr7_2:77499784-77499803 None:intergenic 25.0%
! ATTTATCTTCACAATCTTCT+CGG + chr7_2:77500014-77500033 None:intergenic 25.0%
! TGTGAAGATAAATGTTAATG+GGG - chr7_2:77500021-77500040 Msa1078540:intron 25.0%
!! CATATGTATCTTGATAATTC+CGG - chr7_2:77500058-77500077 Msa1078540:intron 25.0%
!! ATATGTATCTTGATAATTCC+GGG - chr7_2:77500059-77500078 Msa1078540:intron 25.0%
!! AGTGTTGAAATTGATATTAC+TGG - chr7_2:77500184-77500203 Msa1078540:intron 25.0%
!!! AGTATTTATAGCTCTGATAT+CGG - chr7_2:77500637-77500656 Msa1078540:intron 25.0%
!! ACTAATAATTTCAAGTACAG+TGG + chr7_2:77501118-77501137 None:intergenic 25.0%
! TGTACTTGAAATTATTAGTG+AGG - chr7_2:77501119-77501138 Msa1078540:intron 25.0%
! CCAAAGTATATATAGTGATA+TGG + chr7_2:77501928-77501947 None:intergenic 25.0%
! CCATATCACTATATATACTT+TGG - chr7_2:77501925-77501944 Msa1078540:intron 25.0%
! CTCATATATATTTATGGAAG+TGG - chr7_2:77502001-77502020 Msa1078540:intron 25.0%
! AAGAATTGTAATTTCAGATG+TGG - chr7_2:77502029-77502048 Msa1078540:intron 25.0%
!! ATTTTGTCGAGTTCAAATAA+TGG + chr7_2:77502105-77502124 None:intergenic 25.0%
! TTATAAAATGAATCCCAGTT+TGG - chr7_2:77502197-77502216 Msa1078540:intron 25.0%
! AACAATTACTGAAATTTGCA+TGG + chr7_2:77502228-77502247 None:intergenic 25.0%
! TCATAAATGAAAATAGGGAA+AGG - chr7_2:77502268-77502287 Msa1078540:CDS 25.0%
! CAACTAAATAGATACCTTAA+TGG + chr7_2:77502828-77502847 None:intergenic 25.0%
! TTGTCTCAAAACTGAAAATT+TGG + chr7_2:77503042-77503061 None:intergenic 25.0%
! TTAAGTTAACAGAAGTTGTT+TGG + chr7_2:77503083-77503102 None:intergenic 25.0%
! AACAACTTCTGTTAACTTAA+TGG - chr7_2:77503083-77503102 Msa1078540:intron 25.0%
! ATATATACACACACATTAAC+AGG - chr7_2:77503198-77503217 Msa1078540:CDS 25.0%
!! GTAAAAGACTAGTTAGATAA+TGG - chr7_2:77503337-77503356 Msa1078540:CDS 25.0%
! TAGTTGAATCTAAATTCTAC+AGG + chr7_2:77503582-77503601 None:intergenic 25.0%
! TTAGATTCAACTACATTTAG+TGG - chr7_2:77503589-77503608 Msa1078540:CDS 25.0%
!! TTATATAACCAGGAACTTTT+TGG - chr7_2:77503793-77503812 Msa1078540:CDS 25.0%
! TTTGTTTAAATACCTGTTTC+AGG + chr7_2:77503823-77503842 None:intergenic 25.0%
! AACAGGTATTTAAACAAATC+TGG - chr7_2:77503825-77503844 Msa1078540:CDS 25.0%
!! AAAATAAGAGTATGCATTAC+AGG + chr7_2:77503854-77503873 None:intergenic 25.0%
! AAAATATTGCATTACCTGAT+AGG - chr7_2:77503925-77503944 Msa1078540:CDS 25.0%
! TACCATAACTATATATTTGC+AGG - chr7_2:77503952-77503971 Msa1078540:CDS 25.0%
! ATCCTGCAAATATATAGTTA+TGG + chr7_2:77503957-77503976 None:intergenic 25.0%
! ATAACTATATATTTGCAGGA+TGG - chr7_2:77503956-77503975 Msa1078540:CDS 25.0%
!! TTTTAATGAGAGAGCAATTA+AGG - chr7_2:77504056-77504075 Msa1078540:CDS 25.0%
! GAACTTAGTTACAGTAAAAT+AGG - chr7_2:77504363-77504382 Msa1078540:CDS 25.0%
! AGTAAAATAGGAATTCCAAA+GGG - chr7_2:77504375-77504394 Msa1078540:CDS 25.0%
!!! TGGATTATTGTTATTTCTGA+CGG - chr7_2:77504437-77504456 Msa1078540:CDS 25.0%
! ATATGCTTATGAACACTAAT+AGG - chr7_2:77504499-77504518 Msa1078540:five_prime_UTR 25.0%
! TATGCTTATGAACACTAATA+GGG - chr7_2:77504500-77504519 Msa1078540:five_prime_UTR 25.0%
!!! AGAAAGCATTTACAAAACAA+CGG - chr7_2:77504623-77504642 Msa1078540:five_prime_UTR 25.0%
! ACATAGAACTAATCAATATC+TGG + chr7_2:77504753-77504772 None:intergenic 25.0%
! TGGTATTAGGAAAAATTTAG+AGG - chr7_2:77504805-77504824 Msa1078540:intron 25.0%
! TTGTTGTAATTGTTTGGTAT+TGG - chr7_2:77504923-77504942 Msa1078540:five_prime_UTR 25.0%
! TGTTGTAATTGTTTGGTATT+GGG - chr7_2:77504924-77504943 Msa1078540:five_prime_UTR 25.0%
GTAGCAAAAAAAGAAGAAGA+AGG + chr7_2:77499486-77499505 None:intergenic 30.0%
!!! TTTAAGTAACGTTTTGAGGA+TGG + chr7_2:77499616-77499635 None:intergenic 30.0%
! AAAAGTTTCTTCGGTCTTTT+TGG - chr7_2:77499753-77499772 Msa1078540:CDS 30.0%
ACTGAAAGAAAGAATGAATG+TGG - chr7_2:77499820-77499839 Msa1078540:intron 30.0%
AAAGAAAGAATGAATGTGGT+GGG - chr7_2:77499824-77499843 Msa1078540:intron 30.0%
! ATTTGGAACCTTGATAACTA+AGG - chr7_2:77499850-77499869 Msa1078540:intron 30.0%
! TTTGGAACCTTGATAACTAA+GGG - chr7_2:77499851-77499870 Msa1078540:intron 30.0%
ATAAACACCCTTAGTTATCA+AGG + chr7_2:77499861-77499880 None:intergenic 30.0%
! GTAAGGTTTGGTAAATTTCA+AGG - chr7_2:77499974-77499993 Msa1078540:CDS 30.0%
! AAATTTCAAGGTGTTCTCAA+AGG - chr7_2:77499986-77500005 Msa1078540:CDS 30.0%
! TATGTATCTTGATAATTCCG+GGG - chr7_2:77500060-77500079 Msa1078540:intron 30.0%
TCAACCAACAATTGAAGATT+CGG - chr7_2:77500339-77500358 Msa1078540:intron 30.0%
ACAAATTCCTCAATTTCACT+TGG - chr7_2:77500498-77500517 Msa1078540:CDS 30.0%
CAAATTCCTCAATTTCACTT+GGG - chr7_2:77500499-77500518 Msa1078540:CDS 30.0%
GATATCAGAGCTATAAATAC+TGG + chr7_2:77500638-77500657 None:intergenic 30.0%
! AAATAGGTCCCTTTTCTATT+TGG + chr7_2:77500696-77500715 None:intergenic 30.0%
ATGGCAATTTACAAGATGAA+AGG - chr7_2:77500821-77500840 Msa1078540:intron 30.0%
GAATTTGATATCTCACTTTG+TGG - chr7_2:77501309-77501328 Msa1078540:intron 30.0%
TCTCAAAGATGGTCAAAATA+TGG - chr7_2:77501833-77501852 Msa1078540:intron 30.0%
TATATAGTGATATGGGAACT+TGG + chr7_2:77501920-77501939 None:intergenic 30.0%
ATCACTATATATACTTTGGC+TGG - chr7_2:77501929-77501948 Msa1078540:intron 30.0%
TCAACCTGAAATAAGCAAAA+TGG + chr7_2:77501955-77501974 None:intergenic 30.0%
ATTGTAATTTCAGATGTGGA+TGG - chr7_2:77502033-77502052 Msa1078540:intron 30.0%
AATAAGGGGTTAATTGAGTA+CGG + chr7_2:77502177-77502196 None:intergenic 30.0%
CAAACTAACGATGAATGTTT+AGG + chr7_2:77502375-77502394 None:intergenic 30.0%
AATTTAGACAATGGATCACT+AGG + chr7_2:77502420-77502439 None:intergenic 30.0%
!! TATCTTTTTCTGGCCATTTT+TGG - chr7_2:77502463-77502482 Msa1078540:CDS 30.0%
CAATCAAAGTAGATACTAGT+TGG + chr7_2:77502499-77502518 None:intergenic 30.0%
GTAATATGTTTGTGCATGTA+AGG + chr7_2:77502668-77502687 None:intergenic 30.0%
!! GAATATGTGCATTTTTAAGG+AGG + chr7_2:77502701-77502720 None:intergenic 30.0%
! TTCCAATCTTTTCCAACTAA+AGG + chr7_2:77502776-77502795 None:intergenic 30.0%
!! CAAACAGTTGATGATGTAAA+TGG - chr7_2:77502894-77502913 Msa1078540:CDS 30.0%
AAATGGTAGAAGATATTTCG+AGG - chr7_2:77502911-77502930 Msa1078540:CDS 30.0%
AATGGTAGAAGATATTTCGA+GGG - chr7_2:77502912-77502931 Msa1078540:CDS 30.0%
! ATTTAAAGCATCTTGTGTCT+TGG - chr7_2:77502942-77502961 Msa1078540:CDS 30.0%
TAATGAAATGGTAGCAACAA+AGG + chr7_2:77502984-77503003 None:intergenic 30.0%
GTGACAGAAACATAATGAAA+TGG + chr7_2:77502996-77503015 None:intergenic 30.0%
AAAATTTGGACCCCTAATTT+GGG + chr7_2:77503028-77503047 None:intergenic 30.0%
CTCTTTGCAGCTATATAATA+TGG - chr7_2:77503360-77503379 Msa1078540:CDS 30.0%
TAAGTGTCCAAATAGAAACA+GGG + chr7_2:77503510-77503529 None:intergenic 30.0%
TTAAGTGTCCAAATAGAAAC+AGG + chr7_2:77503511-77503530 None:intergenic 30.0%
CACTTAATGCTTGTTTGATT+TGG - chr7_2:77503524-77503543 Msa1078540:CDS 30.0%
GAATCTAAATTCTACAGGAA+TGG + chr7_2:77503577-77503596 None:intergenic 30.0%
! TCCTGATTTTGTTAGGAAAA+TGG - chr7_2:77503728-77503747 Msa1078540:CDS 30.0%
! TCCATTTTCCTAACAAAATC+AGG + chr7_2:77503732-77503751 None:intergenic 30.0%
TGATATAAGGATTTGTGTCT+AGG + chr7_2:77504195-77504214 None:intergenic 30.0%
AGTTGCACATTAGTGATATA+AGG + chr7_2:77504208-77504227 None:intergenic 30.0%
AACTTGAAAGCTCCATTAAA+AGG - chr7_2:77504224-77504243 Msa1078540:CDS 30.0%
TTACTAACACCATTCATGTT+TGG - chr7_2:77504254-77504273 Msa1078540:CDS 30.0%
TACTAACACCATTCATGTTT+GGG - chr7_2:77504255-77504274 Msa1078540:CDS 30.0%
CATTATTACCCAAACATGAA+TGG + chr7_2:77504266-77504285 None:intergenic 30.0%
! TTTGGGTAATAATGTTTTGC+AGG - chr7_2:77504272-77504291 Msa1078540:CDS 30.0%
!! AGAATGGGTTATAATCAGAA+GGG + chr7_2:77504314-77504333 None:intergenic 30.0%
!! TAGAATGGGTTATAATCAGA+AGG + chr7_2:77504315-77504334 None:intergenic 30.0%
TGATTATAACCCATTCTATG+CGG - chr7_2:77504317-77504336 Msa1078540:CDS 30.0%
CAGTAAAATAGGAATTCCAA+AGG - chr7_2:77504374-77504393 Msa1078540:CDS 30.0%
!!! GTATTTTCTTTAGTTCTCAC+AGG - chr7_2:77504463-77504482 Msa1078540:exon 30.0%
!! GAAAGCATTTACAAAACAAC+GGG - chr7_2:77504624-77504643 Msa1078540:five_prime_UTR 30.0%
!! TGGTTTGCAATTTTCATTTG+TGG - chr7_2:77504685-77504704 Msa1078540:intron 30.0%
ACTTCAACTCTTGGAATTAT+TGG - chr7_2:77504715-77504734 Msa1078540:intron 30.0%
AACTAATCAATATCTGGCAT+AGG + chr7_2:77504747-77504766 None:intergenic 30.0%
!!! CATTTTTTACACGGATTCTT+TGG - chr7_2:77504785-77504804 Msa1078540:intron 30.0%
! TGGTTGTTGTTGTAATTGTT+TGG - chr7_2:77504917-77504936 Msa1078540:five_prime_UTR 30.0%
! TAGCATTTCCGTTAACATTT+TGG + chr7_2:77504957-77504976 None:intergenic 30.0%
ACAGATTGAGAAAACGAATG+AGG + chr7_2:77499457-77499476 None:intergenic 35.0%
!!! TTTTGGTTCTCCCAAAATTC+TGG - chr7_2:77499770-77499789 Msa1078540:CDS 35.0%
GAAAGAAAGAATGAATGTGG+TGG - chr7_2:77499823-77499842 Msa1078540:intron 35.0%
! ATGAATGTGGTGGGAAAATT+TGG - chr7_2:77499833-77499852 Msa1078540:intron 35.0%
! ATTGTTGTTCAGCAACAAGA+TGG - chr7_2:77499926-77499945 Msa1078540:CDS 35.0%
! AGCAACAAGATGGAACTTTT+CGG - chr7_2:77499936-77499955 Msa1078540:CDS 35.0%
TTACCAAACCTTACATACCA+AGG + chr7_2:77499968-77499987 None:intergenic 35.0%
! TTTTACAAAATAAGCCTCCC+CGG + chr7_2:77500080-77500099 None:intergenic 35.0%
!!! GGAGGCTTATTTTGTAAAAG+AGG - chr7_2:77500081-77500100 Msa1078540:intron 35.0%
!!! GGCTTATTTTGTAAAAGAGG+TGG - chr7_2:77500084-77500103 Msa1078540:intron 35.0%
! TTTTGTAAAAGAGGTGGATG+AGG - chr7_2:77500090-77500109 Msa1078540:intron 35.0%
AGTTAGTAACACCTTCAACA+GGG + chr7_2:77500141-77500160 None:intergenic 35.0%
! TCTGAGTTTACTTCTGAAGA+CGG - chr7_2:77500160-77500179 Msa1078540:intron 35.0%
TGATCATAGCGTATCTGATT+CGG - chr7_2:77500216-77500235 Msa1078540:intron 35.0%
! AGTTTTGCCAGAACTTCAAA+AGG - chr7_2:77500273-77500292 Msa1078540:CDS 35.0%
ATAAAATGTCCGACCAACAT+CGG + chr7_2:77500305-77500324 None:intergenic 35.0%
AGAATATGGAGAGAATGTTG+TGG - chr7_2:77500372-77500391 Msa1078540:intron 35.0%
!! TTGGCTCTAATTCTGAGATA+GGG + chr7_2:77500459-77500478 None:intergenic 35.0%
! GTGTTGCTGATTATGTTAGT+AGG - chr7_2:77500584-77500603 Msa1078540:intron 35.0%
TCAGAGCTATAAATACTGGA+AGG + chr7_2:77500634-77500653 None:intergenic 35.0%
GAAGGTTGCCAAATAGAAAA+GGG - chr7_2:77500685-77500704 Msa1078540:intron 35.0%
! GAGTGTTTTCAAAAGTTGCT+TGG - chr7_2:77500768-77500787 Msa1078540:intron 35.0%
!!! TGAGTTTTGATTCACCAATG+AGG + chr7_2:77500848-77500867 None:intergenic 35.0%
ATTGGTGAATCAAAACTCAG+CGG - chr7_2:77500849-77500868 Msa1078540:intron 35.0%
!!! AAGCCATTTTGGTTTGAGTA+AGG - chr7_2:77501191-77501210 Msa1078540:intron 35.0%
AGTCCTTACTCAAACCAAAA+TGG + chr7_2:77501197-77501216 None:intergenic 35.0%
!! TTCACTTTTCGAAAAGCAAG+AGG + chr7_2:77501642-77501661 None:intergenic 35.0%
!! GATTCCGAATCTGATTTGTT+TGG - chr7_2:77501711-77501730 Msa1078540:intron 35.0%
AGAGCCAAACAAATCAGATT+CGG + chr7_2:77501718-77501737 None:intergenic 35.0%
GATGCTATCATCTCATTAGA+GGG + chr7_2:77501807-77501826 None:intergenic 35.0%
TGATGCTATCATCTCATTAG+AGG + chr7_2:77501808-77501827 None:intergenic 35.0%
GCATCATTGAATCTCAAAGA+TGG - chr7_2:77501822-77501841 Msa1078540:intron 35.0%
TAACATTCAGTTTCTCTACG+AGG - chr7_2:77501856-77501875 Msa1078540:intron 35.0%
AACATTCAGTTTCTCTACGA+GGG - chr7_2:77501857-77501876 Msa1078540:intron 35.0%
AAGGTAAAGAACGATAGCAA+TGG + chr7_2:77502137-77502156 None:intergenic 35.0%
AAAATAGGGAAAGGAAATGC+AGG - chr7_2:77502277-77502296 Msa1078540:CDS 35.0%
TGGTTGATCTTCACCAAAAA+TGG + chr7_2:77502479-77502498 None:intergenic 35.0%
! TGCTTTCAGATCTGATGTTT+TGG - chr7_2:77502739-77502758 Msa1078540:CDS 35.0%
! GCTTTCAGATCTGATGTTTT+GGG - chr7_2:77502740-77502759 Msa1078540:CDS 35.0%
! CTTTCAGATCTGATGTTTTG+GGG - chr7_2:77502741-77502760 Msa1078540:CDS 35.0%
TGCCTTTAGTTGGAAAAGAT+TGG - chr7_2:77502771-77502790 Msa1078540:CDS 35.0%
GAAAATTTGGACCCCTAATT+TGG + chr7_2:77503029-77503048 None:intergenic 35.0%
! GAGTGATTTTTGCAAACACT+TGG - chr7_2:77503160-77503179 Msa1078540:CDS 35.0%
!!! CAAGTCTGGTTTTTGCTTTA+TGG - chr7_2:77503294-77503313 Msa1078540:CDS 35.0%
!! CATCTTTCCCTGTTTCTATT+TGG - chr7_2:77503500-77503519 Msa1078540:CDS 35.0%
! TACCAGATCCTGATTTTGTT+AGG - chr7_2:77503721-77503740 Msa1078540:CDS 35.0%
TTCCTAACAAAATCAGGATC+TGG + chr7_2:77503726-77503745 None:intergenic 35.0%
!!! CTTTTTGGTTAACCTGAAAC+AGG - chr7_2:77503808-77503827 Msa1078540:CDS 35.0%
GATGGAAAAACCTTACCAAA+AGG - chr7_2:77503974-77503993 Msa1078540:CDS 35.0%
! GAAATAACAACAGGTCCTTT+TGG + chr7_2:77503992-77504011 None:intergenic 35.0%
TTAAAAGTTCCTGACCTTCT+CGG + chr7_2:77504042-77504061 None:intergenic 35.0%
GATTATAACCCATTCTATGC+GGG - chr7_2:77504318-77504337 Msa1078540:CDS 35.0%
ATTATAACCCATTCTATGCG+GGG - chr7_2:77504319-77504338 Msa1078540:CDS 35.0%
CATTATAGATGCAGACCTTA+GGG + chr7_2:77504419-77504438 None:intergenic 35.0%
TTATGAACACTAATAGGGTG+AGG - chr7_2:77504505-77504524 Msa1078540:five_prime_UTR 35.0%
! TTGCAATTTTCATTTGTGGC+AGG - chr7_2:77504689-77504708 Msa1078540:intron 35.0%
TACACGGATTCTTTGGTATT+AGG - chr7_2:77504792-77504811 Msa1078540:intron 35.0%
! TGTAATTGTTTGGTATTGGG+CGG - chr7_2:77504927-77504946 Msa1078540:five_prime_UTR 35.0%
TGCTATATGTTCGAACTACT+TGG - chr7_2:77504972-77504991 Msa1078540:five_prime_UTR 35.0%
! AGTAAGTCACTTTACAAGCA+AGG + chr7_2:77505010-77505029 None:intergenic 35.0%
TTAGGGGTTGGAATGGAATT+TGG + chr7_2:77499326-77499345 None:intergenic 40.0%
TTACAAGTTAGGGGTTGGAA+TGG + chr7_2:77499333-77499352 None:intergenic 40.0%
TGTTGTGGGCTTACAAGTTA+GGG + chr7_2:77499343-77499362 None:intergenic 40.0%
TTGTTGTGGGCTTACAAGTT+AGG + chr7_2:77499344-77499363 None:intergenic 40.0%
! CTTTCTTGCAGTGCTTTGAA+TGG + chr7_2:77499395-77499414 None:intergenic 40.0%
GAGTTAGTAACACCTTCAAC+AGG + chr7_2:77500142-77500161 None:intergenic 40.0%
GATCATAGCGTATCTGATTC+GGG - chr7_2:77500217-77500236 Msa1078540:intron 40.0%
! ATCATAGCGTATCTGATTCG+GGG - chr7_2:77500218-77500237 Msa1078540:intron 40.0%
TTTGCCAGAACTTCAAAAGG+TGG - chr7_2:77500276-77500295 Msa1078540:CDS 40.0%
!!! GATTCCACCTTTTGAAGTTC+TGG + chr7_2:77500283-77500302 None:intergenic 40.0%
TCAGCCGAATCTTCAATTGT+TGG + chr7_2:77500346-77500365 None:intergenic 40.0%
!! TCGGCTGATTTGTCAGAATA+TGG - chr7_2:77500358-77500377 Msa1078540:intron 40.0%
!! TGGCTCTAATTCTGAGATAG+GGG + chr7_2:77500458-77500477 None:intergenic 40.0%
!! GTTGGCTCTAATTCTGAGAT+AGG + chr7_2:77500460-77500479 None:intergenic 40.0%
! GACTGCAAATTTTCCTCAGT+TGG + chr7_2:77500478-77500497 None:intergenic 40.0%
TGATTTCTACGAAGGCAATG+AGG - chr7_2:77500537-77500556 Msa1078540:CDS 40.0%
! TGCTGATTATGTTAGTAGGC+CGG - chr7_2:77500588-77500607 Msa1078540:intron 40.0%
GATATCGGTAATAGTGCTTC+CGG - chr7_2:77500652-77500671 Msa1078540:intron 40.0%
ATATCGGTAATAGTGCTTCC+GGG - chr7_2:77500653-77500672 Msa1078540:intron 40.0%
CGAAGGTTGCCAAATAGAAA+AGG - chr7_2:77500684-77500703 Msa1078540:intron 40.0%
AAAGGGACCTATTTGTCACA+CGG - chr7_2:77500702-77500721 Msa1078540:intron 40.0%
AGCTGCATCATGCATGAATT+CGG - chr7_2:77500744-77500763 Msa1078540:intron 40.0%
! CTTAAATGAACTTGCTCAGC+AGG - chr7_2:77500792-77500811 Msa1078540:intron 40.0%
ACAAGATGAAAGGTCCTCAT+TGG - chr7_2:77500831-77500850 Msa1078540:intron 40.0%
!! GGTTGATAAAGATGCATCAG+TGG - chr7_2:77501020-77501039 Msa1078540:intron 40.0%
ACTTTGTGGTCACGAACTTA+AGG - chr7_2:77501323-77501342 Msa1078540:intron 40.0%
TCAGAGAGAGTTATCTACCA+TGG - chr7_2:77501460-77501479 Msa1078540:intron 40.0%
CAGAGAGAGTTATCTACCAT+GGG - chr7_2:77501461-77501480 Msa1078540:intron 40.0%
GAGTTATCTACCATGGGAAA+AGG - chr7_2:77501467-77501486 Msa1078540:intron 40.0%
CACAGGAATTGTATCTTCAG+GGG + chr7_2:77501544-77501563 None:intergenic 40.0%
CCACAGGAATTGTATCTTCA+GGG + chr7_2:77501545-77501564 None:intergenic 40.0%
CCTGAAGATACAATTCCTGT+GGG - chr7_2:77501543-77501562 Msa1078540:CDS 40.0%
! TAGTGGTGATGAATCAAGTG+AGG - chr7_2:77501677-77501696 Msa1078540:intron 40.0%
! TTCTAGGAACACAACAGGTT+TGG - chr7_2:77501880-77501899 Msa1078540:intron 40.0%
!! CTGGCCATTTTGCTTATTTC+AGG - chr7_2:77501948-77501967 Msa1078540:intron 40.0%
! GTACTGTCAGTAGTCTTACT+TGG + chr7_2:77502067-77502086 None:intergenic 40.0%
GACTACTGACAGTACTTCTT+AGG - chr7_2:77502072-77502091 Msa1078540:intron 40.0%
TTGCATGGTATGTCCAAACT+GGG + chr7_2:77502213-77502232 None:intergenic 40.0%
TTTGCATGGTATGTCCAAAC+TGG + chr7_2:77502214-77502233 None:intergenic 40.0%
GAAAAGATTGGAACCAGACT+GGG - chr7_2:77502783-77502802 Msa1078540:CDS 40.0%
AAAAGATTGGAACCAGACTG+GGG - chr7_2:77502784-77502803 Msa1078540:CDS 40.0%
! AAGGCTTTTCTCTGCCATTA+AGG - chr7_2:77502811-77502830 Msa1078540:CDS 40.0%
ACAACGTGCTTCCCAAATTA+GGG - chr7_2:77503014-77503033 Msa1078540:intron 40.0%
CACACATTAACAGGTTTCCT+AGG - chr7_2:77503207-77503226 Msa1078540:CDS 40.0%
! AGGAACTTGCTTAAGTTCCT+AGG + chr7_2:77503227-77503246 None:intergenic 40.0%
TAAGCAAGTTCCTTTGAGCT+TGG - chr7_2:77503234-77503253 Msa1078540:CDS 40.0%
AAGCAAGTTCCTTTGAGCTT+GGG - chr7_2:77503235-77503254 Msa1078540:CDS 40.0%
AATCTCAAACCCAAGCTCAA+AGG + chr7_2:77503247-77503266 None:intergenic 40.0%
ACGCAGTGAAGTCATTAAAG+AGG + chr7_2:77503476-77503495 None:intergenic 40.0%
TTCTACAGGAATGGTGTAGA+AGG + chr7_2:77503568-77503587 None:intergenic 40.0%
TATAAGCCTGGACAATAGCA+CGG + chr7_2:77503778-77503797 None:intergenic 40.0%
TTGTCCAGGCTTATATAACC+AGG - chr7_2:77503783-77503802 Msa1078540:CDS 40.0%
AGTTCCTGGTTATATAAGCC+TGG + chr7_2:77503790-77503809 None:intergenic 40.0%
CAGGTTAACCAAAAAGTTCC+TGG + chr7_2:77503804-77503823 None:intergenic 40.0%
AGTTATGGTATCAGCCTATC+AGG + chr7_2:77503942-77503961 None:intergenic 40.0%
! AACAACAGGTCCTTTTGGTA+AGG + chr7_2:77503987-77504006 None:intergenic 40.0%
CCATCAGGTGAAATAACAAC+AGG + chr7_2:77504001-77504020 None:intergenic 40.0%
!! CCTGTTGTTATTTCACCTGA+TGG - chr7_2:77503998-77504017 Msa1078540:CDS 40.0%
CAAGCAATCTTGAACTCATG+AGG + chr7_2:77504158-77504177 None:intergenic 40.0%
GTTCAAGATTGCTTGTCTAG+AGG - chr7_2:77504163-77504182 Msa1078540:CDS 40.0%
CCATTATAGATGCAGACCTT+AGG + chr7_2:77504420-77504439 None:intergenic 40.0%
CCTAAGGTCTGCATCTATAA+TGG - chr7_2:77504417-77504436 Msa1078540:CDS 40.0%
! CAATTTTCATTTGTGGCAGG+AGG - chr7_2:77504692-77504711 Msa1078540:intron 40.0%
GTTGTGGGCTTACAAGTTAG+GGG + chr7_2:77499342-77499361 None:intergenic 45.0%
ACCACCAAAAGGGTGAAAAG+GGG + chr7_2:77499894-77499913 None:intergenic 45.0%
CACCACCAAAAGGGTGAAAA+GGG + chr7_2:77499895-77499914 None:intergenic 45.0%
CATCAACAGCACCACCAAAA+GGG + chr7_2:77499904-77499923 None:intergenic 45.0%
ACATCAACAGCACCACCAAA+AGG + chr7_2:77499905-77499924 None:intergenic 45.0%
ACGCCTTGGTATGTAAGGTT+TGG - chr7_2:77499962-77499981 Msa1078540:CDS 45.0%
! GTATCTTGATAATTCCGGGG+AGG - chr7_2:77500063-77500082 Msa1078540:intron 45.0%
GACTCAAATGTCCCTGTTGA+AGG - chr7_2:77500127-77500146 Msa1078540:CDS 45.0%
!! TCATAGCGTATCTGATTCGG+GGG - chr7_2:77500219-77500238 Msa1078540:intron 45.0%
CAAAAGGTGGAATCCGATGT+TGG - chr7_2:77500289-77500308 Msa1078540:CDS 45.0%
AGAGAATGTTGTGGACTTGC+AGG - chr7_2:77500381-77500400 Msa1078540:intron 45.0%
GAGAATGTTGTGGACTTGCA+GGG - chr7_2:77500382-77500401 Msa1078540:intron 45.0%
TTCTAATCCGGAGGTGATCT+TGG - chr7_2:77500405-77500424 Msa1078540:intron 45.0%
! GTGATCTTGGTTAGCGTTGA+CGG - chr7_2:77500418-77500437 Msa1078540:intron 45.0%
CTCAGAATTAGAGCCAACTG+AGG - chr7_2:77500462-77500481 Msa1078540:intron 45.0%
TAGAAATCAGTCCCTTCACC+TGG + chr7_2:77500526-77500545 None:intergenic 45.0%
! GAAGGGACTGATTTCTACGA+AGG - chr7_2:77500529-77500548 Msa1078540:CDS 45.0%
! GGCAATGAGGAGTTTAGTTC+TGG - chr7_2:77500550-77500569 Msa1078540:intron 45.0%
! ACATCAGCTGTTGAAGCATC+CGG + chr7_2:77500610-77500629 None:intergenic 45.0%
TATCGGTAATAGTGCTTCCG+GGG - chr7_2:77500654-77500673 Msa1078540:intron 45.0%
GTTTCCTCCGTGTGACAAAT+AGG + chr7_2:77500712-77500731 None:intergenic 45.0%
ATTTGTCACACGGAGGAAAC+TGG - chr7_2:77500712-77500731 Msa1078540:intron 45.0%
CTTGCTCAGCAGGATGATTA+TGG - chr7_2:77500802-77500821 Msa1078540:intron 45.0%
GAAGAAGTAGCACCACTGAT+GGG + chr7_2:77500958-77500977 None:intergenic 45.0%
TGAAGAAGTAGCACCACTGA+TGG + chr7_2:77500959-77500978 None:intergenic 45.0%
CCATTCCACATCATTCGTAC+CGG + chr7_2:77501073-77501092 None:intergenic 45.0%
TCATTGGAAGTTGCTGTCTG+AGG + chr7_2:77501162-77501181 None:intergenic 45.0%
TCAGACAGCAACTTCCAATG+AGG - chr7_2:77501161-77501180 Msa1078540:intron 45.0%
CAGACAGCAACTTCCAATGA+GGG - chr7_2:77501162-77501181 Msa1078540:intron 45.0%
AGACAGCAACTTCCAATGAG+GGG - chr7_2:77501163-77501182 Msa1078540:intron 45.0%
TTGTGGTCACGAACTTAAGG+CGG - chr7_2:77501326-77501345 Msa1078540:intron 45.0%
AGCACATCGAATATCTGCTG+AGG - chr7_2:77501383-77501402 Msa1078540:intron 45.0%
ATTGTATCTTCAGGGGCAAC+AGG + chr7_2:77501537-77501556 None:intergenic 45.0%
CCCTGAAGATACAATTCCTG+TGG - chr7_2:77501542-77501561 Msa1078540:CDS 45.0%
CCCACAGGAATTGTATCTTC+AGG + chr7_2:77501546-77501565 None:intergenic 45.0%
TTCCTGTGGGTCAAGATGAT+AGG - chr7_2:77501556-77501575 Msa1078540:intron 45.0%
AACCTATCATCTTGACCCAC+AGG + chr7_2:77501561-77501580 None:intergenic 45.0%
AAGTCCAGCGATGATAATCC+TGG - chr7_2:77501582-77501601 Msa1078540:intron 45.0%
AAGACAGCTGAGCACAATAG+TGG - chr7_2:77501660-77501679 Msa1078540:intron 45.0%
! CTCCTCGCAAGCAATTTGTT+AGG - chr7_2:77501772-77501791 Msa1078540:intron 45.0%
GTCCTAACAAATTGCTTGCG+AGG + chr7_2:77501777-77501796 None:intergenic 45.0%
AGTTTCTCTACGAGGGTTCT+AGG - chr7_2:77501864-77501883 Msa1078540:intron 45.0%
!! GGAAGTGTTGAACAGGGATA+AGG + chr7_2:77502156-77502175 None:intergenic 45.0%
!! GAGTACGGAAGTGTTGAACA+GGG + chr7_2:77502162-77502181 None:intergenic 45.0%
!! TGAGTACGGAAGTGTTGAAC+AGG + chr7_2:77502163-77502182 None:intergenic 45.0%
GGAAAAGATTGGAACCAGAC+TGG - chr7_2:77502782-77502801 Msa1078540:CDS 45.0%
CACAACGTGCTTCCCAAATT+AGG - chr7_2:77503013-77503032 Msa1078540:intron 45.0%
CAACGTGCTTCCCAAATTAG+GGG - chr7_2:77503015-77503034 Msa1078540:intron 45.0%
!! CTAGAAGTGCTTGTTGCATC+TGG - chr7_2:77503138-77503157 Msa1078540:CDS 45.0%
TAGAGAGTGAGCTTAAAGCC+TGG - chr7_2:77503270-77503289 Msa1078540:CDS 45.0%
AGCAAAAACCAGACTTGACC+AGG + chr7_2:77503291-77503310 None:intergenic 45.0%
ATAAGCCTGGACAATAGCAC+GGG + chr7_2:77503777-77503796 None:intergenic 45.0%
AGGGACGGAAATAATCCATC+AGG + chr7_2:77504016-77504035 None:intergenic 45.0%
TTCCTGACCTTCTCGGTAAA+GGG + chr7_2:77504035-77504054 None:intergenic 45.0%
TGAACACTAATAGGGTGAGG+TGG - chr7_2:77504508-77504527 Msa1078540:five_prime_UTR 45.0%
GTTCAAGCAAAGACGTAGGA+GGG + chr7_2:77504598-77504617 None:intergenic 45.0%
TGTTCAAGCAAAGACGTAGG+AGG + chr7_2:77504599-77504618 None:intergenic 45.0%
TCCTACGTCTTTGCTTGAAC+AGG - chr7_2:77504598-77504617 Msa1078540:five_prime_UTR 45.0%
ACCTGTTCAAGCAAAGACGT+AGG + chr7_2:77504602-77504621 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr7_2:77504898-77504917 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr7_2:77504899-77504918 None:intergenic 45.0%
GCGGCTGTCCAAAATGTTAA+CGG - chr7_2:77504946-77504965 Msa1078540:five_prime_UTR 45.0%
TGGGCTTACAAGTTAGGGGT+TGG + chr7_2:77499338-77499357 None:intergenic 50.0%
! GCTACCCCTTTTCACCCTTT+TGG - chr7_2:77499887-77499906 Msa1078540:intron 50.0%
! ACCCCTTTTCACCCTTTTGG+TGG - chr7_2:77499890-77499909 Msa1078540:CDS 50.0%
GCACCACCAAAAGGGTGAAA+AGG + chr7_2:77499896-77499915 None:intergenic 50.0%
AGGTGGAATCCGATGTTGGT+CGG - chr7_2:77500293-77500312 Msa1078540:CDS 50.0%
! GGACTTGCAGGGTTCTAATC+CGG - chr7_2:77500393-77500412 Msa1078540:intron 50.0%
ACGCTAACCAAGATCACCTC+CGG + chr7_2:77500415-77500434 None:intergenic 50.0%
CCTGGTCCCAAGTGAAATTG+AGG + chr7_2:77500508-77500527 None:intergenic 50.0%
CCTCAATTTCACTTGGGACC+AGG - chr7_2:77500505-77500524 Msa1078540:CDS 50.0%
TTTCACTTGGGACCAGGTGA+AGG - chr7_2:77500511-77500530 Msa1078540:CDS 50.0%
TTCACTTGGGACCAGGTGAA+GGG - chr7_2:77500512-77500531 Msa1078540:CDS 50.0%
CTATTTGGCAACCTTCGAGC+TGG + chr7_2:77500681-77500700 None:intergenic 50.0%
GGTGAATCAAAACTCAGCGG+AGG - chr7_2:77500852-77500871 Msa1078540:intron 50.0%
GGTGAGTTATCTCCCATCAG+TGG - chr7_2:77500943-77500962 Msa1078540:intron 50.0%
GCATCAGTGGAAGTTGACAC+TGG - chr7_2:77501033-77501052 Msa1078540:intron 50.0%
!! GTGGAAGTTGACACTGGTTC+TGG - chr7_2:77501039-77501058 Msa1078540:intron 50.0%
!! ACTGGTTCTGGCATTCGTTC+CGG - chr7_2:77501051-77501070 Msa1078540:intron 50.0%
TCGTTCCGGTACGAATGATG+TGG - chr7_2:77501065-77501084 Msa1078540:intron 50.0%
CCGGTACGAATGATGTGGAA+TGG - chr7_2:77501070-77501089 Msa1078540:intron 50.0%
GACAGCAACTTCCAATGAGG+GGG - chr7_2:77501164-77501183 Msa1078540:intron 50.0%
!! ATGGCTTTGATCCCCCTCAT+TGG + chr7_2:77501178-77501197 None:intergenic 50.0%
! GAGGGGGATCAAAGCCATTT+TGG - chr7_2:77501180-77501199 Msa1078540:intron 50.0%
TGTGGTCACGAACTTAAGGC+GGG - chr7_2:77501327-77501346 Msa1078540:intron 50.0%
TCACGAACTTAAGGCGGGTA+TGG - chr7_2:77501332-77501351 Msa1078540:intron 50.0%
CACGAACTTAAGGCGGGTAT+GGG - chr7_2:77501333-77501352 Msa1078540:intron 50.0%
TGGTCCAGGATTATCATCGC+TGG + chr7_2:77501589-77501608 None:intergenic 50.0%
AATCCTGGACCATCTTCGTC+TGG - chr7_2:77501597-77501616 Msa1078540:intron 50.0%
!! GAGGGTTCTAGGAACACAAC+AGG - chr7_2:77501875-77501894 Msa1078540:intron 50.0%
GGGAAAGGAAATGCAGGTTC+TGG - chr7_2:77502283-77502302 Msa1078540:CDS 50.0%
GGGCAGTTCATGCCTTTAGT+TGG - chr7_2:77502761-77502780 Msa1078540:CDS 50.0%
GCTTAAAGCCTGGTCAAGTC+TGG - chr7_2:77503280-77503299 Msa1078540:CDS 50.0%
GGGCACTCAAAAACAGTAGC+TGG + chr7_2:77503757-77503776 None:intergenic 50.0%
TTTCCGTCCCTTTACCGAGA+AGG - chr7_2:77504025-77504044 Msa1078540:CDS 50.0%
TGACCTTCTCGGTAAAGGGA+CGG + chr7_2:77504031-77504050 None:intergenic 50.0%
GTTCCTGACCTTCTCGGTAA+AGG + chr7_2:77504036-77504055 None:intergenic 50.0%
AACCCATTCTATGCGGGGTT+TGG - chr7_2:77504324-77504343 Msa1078540:CDS 50.0%
TGCCAAACCCCGCATAGAAT+GGG + chr7_2:77504329-77504348 None:intergenic 50.0%
TTGCCAAACCCCGCATAGAA+TGG + chr7_2:77504330-77504349 None:intergenic 50.0%
ATGTAGCCAACCCCACTTAG+TGG - chr7_2:77504885-77504904 Msa1078540:five_prime_UTR 50.0%
TGTAGCCAACCCCACTTAGT+GGG - chr7_2:77504886-77504905 Msa1078540:five_prime_UTR 50.0%
CTTATCCCACTAAGTGGGGT+TGG + chr7_2:77504894-77504913 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG - chr7_2:77504892-77504911 Msa1078540:five_prime_UTR 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr7_2:77504900-77504919 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr7_2:77504897-77504916 Msa1078540:five_prime_UTR 50.0%
! GAACTTTTCGGAGCACGCCT+TGG - chr7_2:77499948-77499967 Msa1078540:CDS 55.0%
GGAGCACGCCTTGGTATGTA+AGG - chr7_2:77499957-77499976 Msa1078540:CDS 55.0%
TCGGGGGCAATTCAGTTGAC+AGG - chr7_2:77500235-77500254 Msa1078540:intron 55.0%
! CTTGCAGGGTTCTAATCCGG+AGG - chr7_2:77500396-77500415 Msa1078540:intron 55.0%
GGGACCTATTTGTCACACGG+AGG - chr7_2:77500705-77500724 Msa1078540:intron 55.0%
CACTCCAAGAACAAGAGGGG+CGG + chr7_2:77501493-77501512 None:intergenic 55.0%
CGCCACTCCAAGAACAAGAG+GGG + chr7_2:77501496-77501515 None:intergenic 55.0%
CCGCCACTCCAAGAACAAGA+GGG + chr7_2:77501497-77501516 None:intergenic 55.0%
CCCTCTTGTTCTTGGAGTGG+CGG - chr7_2:77501494-77501513 Msa1078540:CDS 55.0%
GACCATCTTCGTCTGGACGT+AGG - chr7_2:77501604-77501623 Msa1078540:intron 55.0%
CACCTACGTCCAGACGAAGA+TGG + chr7_2:77501609-77501628 None:intergenic 55.0%
CATCTTCGTCTGGACGTAGG+TGG - chr7_2:77501607-77501626 Msa1078540:intron 55.0%
GTTGAGCCATCTCCAACCTC+AGG - chr7_2:77501738-77501757 Msa1078540:intron 55.0%
AGCCATCTCCAACCTCAGGT+AGG - chr7_2:77501742-77501761 Msa1078540:intron 55.0%
AGCCTACCTGAGGTTGGAGA+TGG + chr7_2:77501747-77501766 None:intergenic 55.0%
GACTCAAGCCTACCTGAGGT+TGG + chr7_2:77501753-77501772 None:intergenic 55.0%
AGGAGACTCAAGCCTACCTG+AGG + chr7_2:77501757-77501776 None:intergenic 55.0%
AGATTGGAACCAGACTGGGG+TGG - chr7_2:77502787-77502806 Msa1078540:CDS 55.0%
GTCCCTTTACCGAGAAGGTC+AGG - chr7_2:77504030-77504049 Msa1078540:CDS 55.0%
GGCAGGAGGACTTCAACTCT+TGG - chr7_2:77504706-77504725 Msa1078540:intron 55.0%
AAGGCCGCCCCTCTTGTTCT+TGG - chr7_2:77501486-77501505 Msa1078540:CDS 60.0%
CGCCCCTCTTGTTCTTGGAG+TGG - chr7_2:77501491-77501510 Msa1078540:CDS 60.0%
GCCGCCACTCCAAGAACAAG+AGG + chr7_2:77501498-77501517 None:intergenic 60.0%
CGTCCAGACGAAGATGGTCC+AGG + chr7_2:77501603-77501622 None:intergenic 60.0%
CTGGACGTAGGTGGAGACTC+TGG - chr7_2:77501616-77501635 Msa1078540:intron 60.0%
AAAGCCTTGCCACCCCAGTC+TGG + chr7_2:77502799-77502818 None:intergenic 60.0%
! GAGTGCCCGTGCTATTGTCC+AGG - chr7_2:77503769-77503788 Msa1078540:CDS 60.0%
GCAACCTTCGAGCTGGACCC+CGG + chr7_2:77500674-77500693 None:intergenic 65.0%
! AGAGGGGCGGCCTTTTCCCA+TGG + chr7_2:77501480-77501499 None:intergenic 65.0%
GGAACCAGACTGGGGTGGCA+AGG - chr7_2:77502792-77502811 Msa1078540:CDS 65.0%
GCTTCCGGGGTCCAGCTCGA+AGG - chr7_2:77500667-77500686 Msa1078540:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77499254 77505057 77499254 ID=Msa1078540;Name=Msa1078540
chr7_2 mRNA 77499254 77505057 77499254 ID=Msa1078540-mRNA-1;Parent=Msa1078540;Name=Msa1078540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=389|1|1|1|0.9|0.81|11|293|868
chr7_2 exon 77499254 77499600 77499254 ID=Msa1078540-mRNA-1:exon:19058;Parent=Msa1078540-mRNA-1
chr7_2 exon 77499692 77499790 77499692 ID=Msa1078540-mRNA-1:exon:19057;Parent=Msa1078540-mRNA-1
chr7_2 exon 77499889 77500017 77499889 ID=Msa1078540-mRNA-1:exon:19056;Parent=Msa1078540-mRNA-1
chr7_2 exon 77500127 77500170 77500127 ID=Msa1078540-mRNA-1:exon:19055;Parent=Msa1078540-mRNA-1
chr7_2 exon 77500265 77500337 77500265 ID=Msa1078540-mRNA-1:exon:19054;Parent=Msa1078540-mRNA-1
chr7_2 exon 77500482 77500568 77500482 ID=Msa1078540-mRNA-1:exon:19053;Parent=Msa1078540-mRNA-1
chr7_2 exon 77501479 77501563 77501479 ID=Msa1078540-mRNA-1:exon:19052;Parent=Msa1078540-mRNA-1
chr7_2 exon 77502244 77502317 77502244 ID=Msa1078540-mRNA-1:exon:19051;Parent=Msa1078540-mRNA-1
chr7_2 exon 77502415 77503001 77502415 ID=Msa1078540-mRNA-1:exon:19050;Parent=Msa1078540-mRNA-1
chr7_2 exon 77503104 77504646 77503104 ID=Msa1078540-mRNA-1:exon:19049;Parent=Msa1078540-mRNA-1
chr7_2 exon 77504837 77505057 77504837 ID=Msa1078540-mRNA-1:exon:19048;Parent=Msa1078540-mRNA-1
chr7_2 five_prime_UTR 77504837 77505057 77504837 ID=Msa1078540-mRNA-1:five_prime_utr;Parent=Msa1078540-mRNA-1
chr7_2 five_prime_UTR 77504479 77504646 77504479 ID=Msa1078540-mRNA-1:five_prime_utr;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77503104 77504478 77503104 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77502415 77503001 77502415 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77502244 77502317 77502244 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77501479 77501563 77501479 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77500482 77500568 77500482 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77500265 77500337 77500265 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77500127 77500170 77500127 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77499889 77500017 77499889 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77499692 77499790 77499692 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 CDS 77499547 77499600 77499547 ID=Msa1078540-mRNA-1:cds;Parent=Msa1078540-mRNA-1
chr7_2 three_prime_UTR 77499254 77499546 77499254 ID=Msa1078540-mRNA-1:three_prime_utr;Parent=Msa1078540-mRNA-1
Gene Sequence

>Msa1078540

ATGAATGTGGTGGGAAAATTTGGAACCTTGATAACTAAGGGTGTTTATTCAGTTGCTACCCCTTTTCACCCTTTTGGTGGTGCTGTTGATGTCATTGTTGTTCAGCAACAAGATGGAACTTTTCGGAGCACGCCTTGGTATGTAAGGTTTGGTAAATTTCAAGGTGTTCTCAAAGGTGCCGAGAAGATTGTGAAGATAAATGTTAATGGGGTTGAAGCGAATTTTCATATGTATCTTGATAATTCCGGGGAGGCTTATTTTGTAAAAGAGGTGGATGAGGATGATAAAAGTGTTGACTCAAATGTCCCTGTTGAAGGTGTTACTAACTCTGAGTTTACTTCTGAAGACGGTAGTGTTGAAATTGATATTACTGGTCATAGACTTGATCATAGCGTATCTGATTCGGGGGCAATTCAGTTGACAGGTGAAGATCATTCTTCAGTTTTGCCAGAACTTCAAAAGGTGGAATCCGATGTTGGTCGGACATTTTATGATTTTGAAGATGATCAACCAACAATTGAAGATTCGGCTGATTTGTCAGAATATGGAGAGAATGTTGTGGACTTGCAGGGTTCTAATCCGGAGGTGATCTTGGTTAGCGTTGACGGTCATATATTGACAGCCCCTATCTCAGAATTAGAGCCAACTGAGGAAAATTTGCAGTCACAAATTCCTCAATTTCACTTGGGACCAGGTGAAGGGACTGATTTCTACGAAGGCAATGAGGAGTTTAGTTCTGGTGAAAATGCAAGTGTTGCTGATTATGTTAGTAGGCCGGATGCTTCAACAGCTGATGTTCCTTCCAGTATTTATAGCTCTGATATCGGTAATAGTGCTTCCGGGGTCCAGCTCGAAGGTTGCCAAATAGAAAAGGGACCTATTTGTCACACGGAGGAAACTGGCACAGAAGAAGCTGCATCATGCATGAATTCGGAGAGTGTTTTCAAAAGTTGCTTGGACTTAAATGAACTTGCTCAGCAGGATGATTATGGCAATTTACAAGATGAAAGGTCCTCATTGGTGAATCAAAACTCAGCGGAGGAATCTAATGAAAATTGTTCAAATGTTGATGAAAATGCAAAAGAGAGCATTAAACAATTTAGAAATATTGGTGAGTTATCTCCCATCAGTGGTGCTACTTCTTCAGACGACAGTAATTCTACAAATTTAAAATCAGAATTTCAAGGGGTTGATAAAGATGCATCAGTGGAAGTTGACACTGGTTCTGGCATTCGTTCCGGTACGAATGATGTGGAATGGAATGATAGTAATAGTCAAGAAACCACTGTACTTGAAATTATTAGTGAGGAAGATAATATAACAGCACCTCAGACAGCAACTTCCAATGAGGGGGATCAAAGCCATTTTGGTTTGAAATTTGATATCTCACTTTGTGGTCACGAACTTAAGGCGGGTATGGGTTTTATCGCTGCTGCTGAAGTGTTTGAAGCACATCGAATATCTGCTGAGGAATTTAGAGTCTCTGCGCCATCTATAACTAAGAATAAAAATCTTGTTGTGAAGTTCAGAGAGAGTTATCTACCATGGGAAAAGGCCGCCCCTCTTGTTCTTGGAGTGGCGGCATTTGATTTAGACTTACCTGTTGCCCCTGAAGATACAATTCCTGTGGGTCAAGATGATAGGTTGAAGTCCAGCGATGATAATCCTGGACCATCTTCGTCTGGACGTAGGTGGAGACTCTGGCCTCTTGCTTTTCGAAAAGTGAAGACAGCTGAGCACAATAGTGGTGATGAATCAAGTGAGGATATATTTCTAGATTCCGAATCTGATTTGTTTGGCTCTGTTGAGCCATCTCCAACCTCAGGTAGGCTTGAGTCTCCTCGCAAGCAATTTGTTAGGACAAATGTTCCCTCTAATGAGATGATAGCATCATTGAATCTCAAAGATGGTCAAAATATGGTAACATTCAGTTTCTCTACGAGGGTTCTAGGAACACAACAGGTTGATGCTCATATATATTTATGGAAGTGGAACGCAAGAATTGTAATTTCAGATGTGGATGGAACTATTACCAAATCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGAAAAGATTGGAACCAGACTGGGGTGGCAAGGCTTTTCTCTGCCATTAAGGAAAATGGATACCAGCTACTGTTTTTGAGTGCCCGTGCTATTGTCCAGGCTTATATAACCAGGAACTTTTTGGTTAACCTGAAACAGGATGGAAAAACCTTACCAAAAGGACCTGTTGTTATTTCACCTGATGGATTATTTCCGTCCCTTTACCGAGAAGTAATAAAAAGAGCTCCTCATGAGTTCAAGATTGCTTGTCTAGAGGATATCAAAAGACTTTTCCCTTCTGATTATAACCCATTCTATGCGGGGTTTGGCAATAGAGACACAGATGAACTTAGTTACAGTAAAATAGGAATTCCAAAGGGAAAAATATTTATCATTAACCCTAAGGGTGAGGTGGCAATAAGTCATCGTATCGATGCAAAATCTTATACATCACTACACACACTCGTCAATGACATGTTCCCTCCTACGTCTTTGCTTGAACAGGAGGACTTCAACTCTTGGAATTATTGGAGAGTGCCTATGCCAGATATTGATTAG
Protein sequence

>Msa1078540

MNVVGKFGTLITKGVYSVATPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKGAEKIVKINVNGVEANFHMYLDNSGEAYFVKEVDEDDKSVDSNVPVEGVTNSEFTSEDGSVEIDITGHRLDHSVSDSGAIQLTGEDHSSVLPELQKVESDVGRTFYDFEDDQPTIEDSADLSEYGENVVDLQGSNPEVILVSVDGHILTAPISELEPTEENLQSQIPQFHLGPGEGTDFYEGNEEFSSGENASVADYVSRPDASTADVPSSIYSSDIGNSASGVQLEGCQIEKGPICHTEETGTEEAASCMNSESVFKSCLDLNELAQQDDYGNLQDERSSLVNQNSAEESNENCSNVDENAKESIKQFRNIGELSPISGATSSDDSNSTNLKSEFQGVDKDASVEVDTGSGIRSGTNDVEWNDSNSQETTVLEIISEEDNITAPQTATSNEGDQSHFGLKFDISLCGHELKAGMGFIAAAEVFEAHRISAEEFRVSAPSITKNKNLVVKFRESYLPWEKAAPLVLGVAAFDLDLPVAPEDTIPVGQDDRLKSSDDNPGPSSSGRRWRLWPLAFRKVKTAEHNSGDESSEDIFLDSESDLFGSVEPSPTSGRLESPRKQFVRTNVPSNEMIASLNLKDGQNMVTFSFSTRVLGTQQVDAHIYLWKWNARIVISDVDGTITKSDVLGQFMPLVGKDWNQTGVARLFSAIKENGYQLLFLSARAIVQAYITRNFLVNLKQDGKTLPKGPVVISPDGLFPSLYREVIKRAPHEFKIACLEDIKRLFPSDYNPFYAGFGNRDTDELSYSKIGIPKGKIFIINPKGEVAISHRIDAKSYTSLHTLVNDMFPPTSLLEQEDFNSWNYWRVPMPDID*