AlfalfaGEDB | Msa1172110

M. sativa cultivar zhongmu-4 / Msa1172110

KEGG: -
GO: GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363
PFAM: PF14622.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172110	XP_003608942.1	97.761	134	3	0	4	137	45	178	5.10e-87	261

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172110	sp\|Q9FYL8\|NFD2_ARATH	57.353	136	58	0	2	137	55	190	1.12e-49	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1172110	Msa1172130	0.801682	8.023827e-49	-8.615850e-47
Msa1172110	Msa1298550	0.805335	1.403210e-49	-8.615850e-47
Msa1172110	Msa1330890	0.806168	9.375722e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172110	MtrunA17_Chr4g0059241	97.761	134	3	0	4	137	45	178	4.69e-91	261
Msa1172110	MtrunA17_Chr4g0040671	94.545	55	3	0	4	58	45	99	2.38e-30	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1172110	AT1G24450.1	57.353	136	58	0	2	137	55	190	1.14e-50	160

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Find 28 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCGTTTGGGTTTGCACA+AGG	0.636231	8_1:-1986788	Msa1172110:CDS
ACCCAAACGCATTGCATCAA+CGG	0.482026	8_1:+1986798	None:intergenic
ACTGGTAGTTCGGAGTCTGC+GGG	0.579104	8_1:-1986676	Msa1172110:CDS
ACTGTTCATGGTCGTGATCT+TGG	0.284490	8_1:-1986640	Msa1172110:CDS
AGCACCACAAACCACAGCAG+TGG	0.604051	8_1:+1986732	None:intergenic
AGTGGAAGAAGAATTGGTCT+TGG	0.487457	8_1:+1986750	None:intergenic
ATGAGTCGACATTGGAGATT+AGG	0.358387	8_1:+1986827	None:intergenic
ATGTGTATTACATGATGATC+AGG	0.451757	8_1:-1987026	None:intergenic
CAAGCGACGGTTCAACTCTT+TGG	0.330495	8_1:+1986852	None:intergenic
CAATTCTTCTTCCACTGCTG+TGG	0.459397	8_1:-1986743	Msa1172110:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCTTGATACTGGTAGTT+CGG	-	chr8_1:1986947-1986966	Msa1172110:CDS	35.0%
TGAGTCGACATTGGAGATTA+GGG	+	chr8_1:1986808-1986827	None:intergenic	40.0%
ATGAGTCGACATTGGAGATT+AGG	+	chr8_1:1986809-1986828	None:intergenic	40.0%
ACCCAAACGCATTGCATCAA+CGG	+	chr8_1:1986838-1986857	None:intergenic	45.0%
CACAGCAGTGGAAGAAGAAT+TGG	+	chr8_1:1986892-1986911	None:intergenic	45.0%
CAATTCTTCTTCCACTGCTG+TGG	-	chr8_1:1986890-1986909	Msa1172110:CDS	45.0%
ACTGTTCATGGTCGTGATCT+TGG	-	chr8_1:1986993-1987012	Msa1172110:CDS	45.0%
CTGTTCATGGTCGTGATCTT+GGG	-	chr8_1:1986994-1987013	Msa1172110:CDS	45.0%
TGTTCATGGTCGTGATCTTG+GGG	-	chr8_1:1986995-1987014	Msa1172110:CDS	45.0%
TCTCTTCGGAGAAAGAAGCG+TGG	+	chr8_1:1986674-1986693	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	1986621	1987034	1986621	ID=Msa1172110;Name=Msa1172110
chr8_1	mRNA	1986621	1987034	1986621	ID=Msa1172110-mRNA-1;Parent=Msa1172110;Name=Msa1172110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|137
chr8_1	exon	1986621	1987034	1986621	ID=Msa1172110-mRNA-1:exon:733;Parent=Msa1172110-mRNA-1
chr8_1	CDS	1986621	1987034	1986621	ID=Msa1172110-mRNA-1:cds;Parent=Msa1172110-mRNA-1

Gene Sequence

>Msa1172110

ATGATCAGGTACACTTTCAAGAGCATAAGTCTTCTTCGTCGTGCAATGACCCACGCTTCTTTCTCCGAAGAGAACAACAAAGCTTTCAGCATTTTAGGCGCTACAATCATTGAAACATCAGTTTCTTTCAATTTGCTTTCGAAAGACGTTGATATTTCCGCCAAAGAGTTGAACCGTCGCTTGTCCCTAATCTCCAATGTCGACTCATCTTGTGCCGTTGATGCAATGCGTTTGGGTTTGCACAAGGTGGTTCGTGTCTCGCCCAAGACCAATTCTTCTTCCACTGCTGTGGTTTGTGGTGCTTTTCGATCAATTTTTGGTGCTATTTCTCTTGATACTGGTAGTTCGGAGTCTGCGGGTAATGTTTTCTTGACTGTTCATGGTCGTGATCTTGGGGTTTACGCTGCTATGTGA

Protein sequence

>Msa1172110

MIRYTFKSISLLRRAMTHASFSEENNKAFSILGATIIETSVSFNLLSKDVDISAKELNRRLSLISNVDSSCAVDAMRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFGAISLDTGSSESAGNVFLTVHGRDLGVYAAM*