AlfalfaGEDB | Msa1298550

M. sativa cultivar zhongmu-4 / Msa1298550

KEGG: -
GO: GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363
PFAM: PF14622.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298550	XP_003608942.1	97.191	178	5	0	1	178	1	178	5.24e-121	349

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298550	sp\|Q9FYL8\|NFD2_ARATH	57.047	149	64	0	30	178	42	190	4.66e-56	177

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298550	G7JNT6	97.191	178	5	0	1	178	1	178	2.50e-121	349

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1298550	0.803914	2.776940e-49	-8.615850e-47
Msa0036370	Msa1298550	-0.813207	2.876174e-51	-8.615850e-47
Msa0072170	Msa1298550	-0.812836	3.469591e-51	-8.615850e-47
Msa0090030	Msa1298550	-0.840638	7.706131e-58	-8.615850e-47
Msa0092170	Msa1298550	-0.812096	5.034177e-51	-8.615850e-47
Msa0112300	Msa1298550	0.815710	8.041344e-52	-8.615850e-47
Msa0120540	Msa1298550	-0.816749	4.710205e-52	-8.615850e-47
Msa0628290	Msa1298550	-0.802237	6.170589e-49	-8.615850e-47
Msa0630950	Msa1298550	-0.823911	1.073136e-53	-8.615850e-47
Msa0716420	Msa1298550	0.807239	5.570619e-50	-8.615850e-47
Msa0792090	Msa1298550	-0.810937	8.992625e-51	-8.615850e-47
Msa0799010	Msa1298550	0.815226	1.030263e-51	-8.615850e-47
Msa0820530	Msa1298550	0.807857	4.117655e-50	-8.615850e-47
Msa0173330	Msa1298550	-0.827289	1.698363e-54	-8.615850e-47
Msa0175290	Msa1298550	0.817253	3.629804e-52	-8.615850e-47
Msa0212750	Msa1298550	0.829986	3.786627e-55	-8.615850e-47
Msa0223920	Msa1298550	-0.819933	8.952836e-53	-8.615850e-47
Msa0227310	Msa1298550	0.814701	1.347108e-51	-8.615850e-47
Msa0229360	Msa1298550	-0.836240	1.050572e-56	-8.615850e-47
Msa1236070	Msa1298550	0.809962	1.460039e-50	-8.615850e-47
Msa1267260	Msa1298550	-0.801994	6.922179e-49	-8.615850e-47
Msa1298550	Msa1330890	0.971152	1.024350e-132	-8.615850e-47
Msa1298550	Msa1363700	-0.836281	1.026081e-56	-8.615850e-47
Msa1298550	Msa1364060	-0.800230	1.588832e-48	-8.615850e-47
Msa1298550	Msa1371090	-0.817508	3.179233e-52	-8.615850e-47
Msa0377530	Msa1298550	-0.800489	1.406853e-48	-8.615850e-47
Msa0426810	Msa1298550	-0.812937	3.297650e-51	-8.615850e-47
Msa0436190	Msa1298550	-0.813287	2.763086e-51	-8.615850e-47
Msa0993240	Msa1298550	-0.826466	2.670761e-54	-8.615850e-47
Msa1002600	Msa1298550	0.815954	7.093128e-52	-8.615850e-47
Msa1010460	Msa1298550	-0.802798	4.728381e-49	-8.615850e-47
Msa1036910	Msa1298550	-0.805156	1.529591e-49	-8.615850e-47
Msa1079620	Msa1298550	-0.820880	5.428849e-53	-8.615850e-47
Msa0265160	Msa1298550	-0.844957	5.478678e-59	-8.615850e-47
Msa0296980	Msa1298550	0.800193	1.616251e-48	-8.615850e-47
Msa0303160	Msa1298550	-0.847311	1.253100e-59	-8.615850e-47
Msa0304840	Msa1298550	-0.805813	1.113540e-49	-8.615850e-47
Msa1164020	Msa1298550	-0.814837	1.256954e-51	-8.615850e-47
Msa1172110	Msa1298550	0.805335	1.403210e-49	-8.615850e-47
Msa1172130	Msa1298550	0.981956	7.220422e-154	-8.615850e-47
Msa0505060	Msa1298550	-0.803674	3.113812e-49	-8.615850e-47
Msa0524600	Msa1298550	-0.814762	1.306372e-51	-8.615850e-47
Msa0534410	Msa1298550	-0.849755	2.637911e-60	-8.615850e-47
Msa0555400	Msa1298550	-0.801459	8.914316e-49	-8.615850e-47
Msa0590650	Msa1298550	-0.823584	1.280272e-53	-8.615850e-47
Msa0879860	Msa1298550	-0.805473	1.312452e-49	-8.615850e-47
Msa0924150	Msa1298550	0.812696	3.722919e-51	-8.615850e-47
Msa0945100	Msa1298550	-0.800097	1.691143e-48	-8.615850e-47
Msa0963090	Msa1298550	0.806428	8.266813e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298550	MtrunA17_Chr4g0059241	97.191	178	5	0	1	178	1	178	4.82e-125	349
Msa1298550	MtrunA17_Chr4g0040671	94.949	99	5	0	1	99	1	99	1.38e-63	191

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298550	AT1G24450.1	57.047	149	64	0	30	178	42	190	4.73e-57	177

Find 71 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAATTCACCTTGTTATT+TGG	0.076005	8_3:+59405777	Msa1298550:five_prime_UTR
GGGCAAACCCTAGTTGTTTC+TGG	0.221287	8_3:-59406093	None:intergenic
ACCAATTCACCTTGTTATTT+GGG	0.247352	8_3:+59405778	Msa1298550:five_prime_UTR
CAAGTTCACAGACAAGTAAA+AGG	0.271671	8_3:+59405807	Msa1298550:five_prime_UTR
TAACAAGGTGAATTGGTTAT+AGG	0.279800	8_3:-59405772	None:intergenic
ACTGTTCATGGTCGTGATCT+TGG	0.284490	8_3:+59406597	Msa1298550:CDS
TAATTAACTTAGGGTATGTT+TGG	0.308800	8_3:+59406736	Msa1298550:three_prime_UTR
GGTGCTATTTCTCTTGATAC+TGG	0.322054	8_3:+59406543	Msa1298550:CDS
CTGTTCATGGTCGTGATCTT+GGG	0.329301	8_3:+59406598	Msa1298550:CDS
CAAGCGACGGTTCAACTCTT+TGG	0.330495	8_3:-59406385	None:intergenic
TGCCGTTGATGCAATGCGTT+TGG	0.351005	8_3:+59406437	Msa1298550:CDS
TCCCCATGCTACCATCGTTC+AGG	0.352766	8_3:+59405942	Msa1298550:CDS
AACAAGGTGAATTGGTTATA+GGG	0.357540	8_3:-59405771	None:intergenic
ATGAGTCGACATTGGAGATT+AGG	0.358387	8_3:-59406410	None:intergenic
TTCTCTTGATACTGGTAGTT+CGG	0.366585	8_3:+59406551	Msa1298550:CDS
TTAGTTAATCTAATTAACTT+AGG	0.370936	8_3:+59406726	Msa1298550:three_prime_UTR
CCCCAAATAACAAGGTGAAT+TGG	0.371013	8_3:-59405779	None:intergenic
TCTTCCACTGCTGTGGTTTG+TGG	0.372837	8_3:+59406501	Msa1298550:CDS
GTTTCGAGGGCGGATGAAAA+TGG	0.383610	8_3:-59406067	None:intergenic
CACAGCAGTGGAAGAAGAAT+TGG	0.384003	8_3:-59406493	None:intergenic
GAAAGCTTTGTTGTTCTCTT+CGG	0.417815	8_3:-59406289	None:intergenic
GTGAATTGGTTATAGGGAAA+TGG	0.428756	8_3:-59405765	None:intergenic
TGAGTCGACATTGGAGATTA+GGG	0.444608	8_3:-59406409	None:intergenic
CAATTCTTCTTCCACTGCTG+TGG	0.459397	8_3:+59406494	Msa1298550:CDS
TAGTTAATCTAATTAACTTA+GGG	0.460003	8_3:+59406727	Msa1298550:three_prime_UTR
GCCGTTGATGCAATGCGTTT+GGG	0.462426	8_3:+59406438	Msa1298550:CDS
GTTGTTTCTGGAGGGTTTCG+AGG	0.471552	8_3:-59406081	None:intergenic
AAGTTCACAGACAAGTAAAA+GGG	0.478906	8_3:+59405808	Msa1298550:five_prime_UTR
ACCCAAACGCATTGCATCAA+CGG	0.482026	8_3:-59406439	None:intergenic
AGTGGAAGAAGAATTGGTCT+TGG	0.487457	8_3:-59406487	None:intergenic
GTGGAAGAAGAATTGGTCTT+GGG	0.501015	8_3:-59406486	None:intergenic
CAAACCCTAGTTGTTTCTGG+AGG	0.510081	8_3:-59406090	None:intergenic
TTGTTTCTGGAGGGTTTCGA+GGG	0.515270	8_3:-59406080	None:intergenic
GAAACCCTCCAGAAACAACT+AGG	0.522143	8_3:+59406085	Msa1298550:CDS
TACTGGTAGTTCGGAGTCTG+CGG	0.528726	8_3:+59406560	Msa1298550:CDS
AACCTGAACGATGGTAGCAT+GGG	0.530303	8_3:-59405944	None:intergenic
AAACCCTAGTTGTTTCTGGA+GGG	0.539563	8_3:-59406089	None:intergenic
ACCCCTTCAAACAGTCTCAC+AGG	0.540513	8_3:-59406784	None:intergenic
AAACCTGAACGATGGTAGCA+TGG	0.544111	8_3:-59405945	None:intergenic
TACCTGTGAGACTGTTTGAA+GGG	0.550478	8_3:+59406782	Msa1298550:three_prime_UTR
GTACCTGTGAGACTGTTTGA+AGG	0.554837	8_3:+59406781	Msa1298550:three_prime_UTR
CTCTTCGGAGAAAGAAGCGT+GGG	0.560654	8_3:-59406274	None:intergenic
TTTCTGGAGGGTTTCGAGGG+CGG	0.561747	8_3:-59406077	None:intergenic
TCTTCAAAATGAAACAAACA+TGG	0.566640	8_3:-59406661	None:intergenic
GCGACGGTTCAACTCTTTGG+CGG	0.570405	8_3:-59406382	None:intergenic
CCAATTCACCTTGTTATTTG+GGG	0.571549	8_3:+59405779	Msa1298550:five_prime_UTR
AAGGATCGCAATGAGGAAGA+TGG	0.572481	8_3:-59405920	None:intergenic
TACGCTGCTATGTGAAATGT+AGG	0.575316	8_3:+59406624	Msa1298550:exon
ACTGGTAGTTCGGAGTCTGC+GGG	0.579104	8_3:+59406561	Msa1298550:CDS
TTGAACGGAACGGAACGGAA+CGG	0.583098	8_3:-59405865	None:intergenic
TGTTCATGGTCGTGATCTTG+GGG	0.587592	8_3:+59406599	Msa1298550:CDS
GGCACAAGATGAGTCGACAT+TGG	0.593448	8_3:-59406418	None:intergenic
AGCACCACAAACCACAGCAG+TGG	0.604051	8_3:-59406505	None:intergenic
GAAGATGGTGAAGACGATGA+AGG	0.605415	8_3:-59405905	None:intergenic
ACCTGTGAGACTGTTTGAAG+GGG	0.609777	8_3:+59406783	Msa1298550:three_prime_UTR
GAACGATGGTAGCATGGGGA+AGG	0.610380	8_3:-59405939	None:intergenic
AAACAAACATGGGTACTGAA+AGG	0.611119	8_3:-59406650	None:intergenic
GCGTTTGGGTTTGCACAAGG+TGG	0.620407	8_3:+59406452	Msa1298550:CDS
GGTTATAGGGAAATGGAAGG+AGG	0.628587	8_3:-59405758	None:intergenic
TTGGTTATCCCCAAATAACA+AGG	0.629002	8_3:-59405787	None:intergenic
AATGCGTTTGGGTTTGCACA+AGG	0.636231	8_3:+59406449	Msa1298550:CDS
AAACCCTCCAGAAACAACTA+GGG	0.642154	8_3:+59406086	Msa1298550:CDS
ATTGGTTATAGGGAAATGGA+AGG	0.645859	8_3:-59405761	None:intergenic
CATGGGGAAGGATCGCAATG+AGG	0.653551	8_3:-59405927	None:intergenic
GAAGACGATGAAGGTACGAG+TGG	0.655609	8_3:-59405896	None:intergenic
CTTCAAAATGAAACAAACAT+GGG	0.663181	8_3:-59406660	None:intergenic
AGTTCACAGACAAGTAAAAG+GGG	0.666189	8_3:+59405809	Msa1298550:five_prime_UTR
TGGAGATTAGGGACAAGCGA+CGG	0.678870	8_3:-59406398	None:intergenic
ACCTGAACGATGGTAGCATG+GGG	0.683989	8_3:-59405943	None:intergenic
TCTCTTCGGAGAAAGAAGCG+TGG	0.707050	8_3:-59406275	None:intergenic
GGAAAAGGAAACCTGAACGA+TGG	0.708272	8_3:-59405953	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAACAAATTAAATAGAATT+TGG	-	chr8_3:59406187-59406206	None:intergenic	10.0%
!!	TTAACAAATTAAATAGAATT+TGG	-	chr8_3:59406187-59406206	None:intergenic	10.0%
!!	TTAGTTAATCTAATTAACTT+AGG	+	chr8_3:59406726-59406745	Msa1298550:three_prime_UTR	15.0%
!!	TAGTTAATCTAATTAACTTA+GGG	+	chr8_3:59406727-59406746	Msa1298550:three_prime_UTR	15.0%
!!	TTAGTTAATCTAATTAACTT+AGG	+	chr8_3:59406726-59406745	Msa1298550:three_prime_UTR	15.0%
!!	TAGTTAATCTAATTAACTTA+GGG	+	chr8_3:59406727-59406746	Msa1298550:three_prime_UTR	15.0%
!!!	ATGAAAACTGTTTCTATTAA+TGG	-	chr8_3:59406015-59406034	None:intergenic	20.0%
!!	TAGAATAAAATGAAAAGAGA+GGG	-	chr8_3:59406138-59406157	None:intergenic	20.0%
!!	ATAGAATAAAATGAAAAGAG+AGG	-	chr8_3:59406139-59406158	None:intergenic	20.0%
!!	ATATTCTTCTTTATAGAAAG+AGG	-	chr8_3:59405729-59405748	None:intergenic	20.0%
!!!	ATGAAAACTGTTTCTATTAA+TGG	-	chr8_3:59406015-59406034	None:intergenic	20.0%
!!	TAGAATAAAATGAAAAGAGA+GGG	-	chr8_3:59406138-59406157	None:intergenic	20.0%
!!	ATAGAATAAAATGAAAAGAG+AGG	-	chr8_3:59406139-59406158	None:intergenic	20.0%
!!!	TTAATGGATTGTTTCGATTT+TGG	-	chr8_3:59405999-59406018	None:intergenic	25.0%
!	CTTCAAAATGAAACAAACAT+GGG	-	chr8_3:59406663-59406682	None:intergenic	25.0%
!	TCTTCAAAATGAAACAAACA+TGG	-	chr8_3:59406664-59406683	None:intergenic	25.0%
!	TAATTAACTTAGGGTATGTT+TGG	+	chr8_3:59406736-59406755	Msa1298550:three_prime_UTR	25.0%
!!!	TTAATGGATTGTTTCGATTT+TGG	-	chr8_3:59405999-59406018	None:intergenic	25.0%
!	CTTCAAAATGAAACAAACAT+GGG	-	chr8_3:59406663-59406682	None:intergenic	25.0%
!	TCTTCAAAATGAAACAAACA+TGG	-	chr8_3:59406664-59406683	None:intergenic	25.0%
!	TAATTAACTTAGGGTATGTT+TGG	+	chr8_3:59406736-59406755	Msa1298550:three_prime_UTR	25.0%
	AACAAGGTGAATTGGTTATA+GGG	-	chr8_3:59405774-59405793	None:intergenic	30.0%
	TAACAAGGTGAATTGGTTAT+AGG	-	chr8_3:59405775-59405794	None:intergenic	30.0%
!!	AACCAATTCACCTTGTTATT+TGG	+	chr8_3:59405777-59405796	Msa1298550:five_prime_UTR	30.0%
!!	ACCAATTCACCTTGTTATTT+GGG	+	chr8_3:59405778-59405797	Msa1298550:five_prime_UTR	30.0%
	AAGTTCACAGACAAGTAAAA+GGG	+	chr8_3:59405808-59405827	Msa1298550:five_prime_UTR	30.0%
	GAGAAAAATAAGAGAGAAAG+GGG	-	chr8_3:59405977-59405996	None:intergenic	30.0%
	GGAGAAAAATAAGAGAGAAA+GGG	-	chr8_3:59405978-59405997	None:intergenic	30.0%
	TGGAGAAAAATAAGAGAGAA+AGG	-	chr8_3:59405979-59405998	None:intergenic	30.0%
	TTCATTAATCTTGTTCTTGC+AGG	+	chr8_3:59406030-59406049	Msa1298550:intron	30.0%
	TCATTAATCTTGTTCTTGCA+GGG	+	chr8_3:59406031-59406050	Msa1298550:intron	30.0%
	ATGTGTATTACATGATGATC+AGG	+	chr8_3:59406211-59406230	Msa1298550:intron	30.0%
!	AACAAAGCTTTCAGCATTTT+AGG	+	chr8_3:59406300-59406319	Msa1298550:CDS	30.0%
!	AATGTTTTCTTGACTGTTCA+TGG	+	chr8_3:59406585-59406604	Msa1298550:CDS	30.0%
	AACAAGGTGAATTGGTTATA+GGG	-	chr8_3:59405774-59405793	None:intergenic	30.0%
	TAACAAGGTGAATTGGTTAT+AGG	-	chr8_3:59405775-59405794	None:intergenic	30.0%
!!	AACCAATTCACCTTGTTATT+TGG	+	chr8_3:59405777-59405796	Msa1298550:five_prime_UTR	30.0%
!!	ACCAATTCACCTTGTTATTT+GGG	+	chr8_3:59405778-59405797	Msa1298550:five_prime_UTR	30.0%
	AAGTTCACAGACAAGTAAAA+GGG	+	chr8_3:59405808-59405827	Msa1298550:five_prime_UTR	30.0%
	GAGAAAAATAAGAGAGAAAG+GGG	-	chr8_3:59405977-59405996	None:intergenic	30.0%
	GGAGAAAAATAAGAGAGAAA+GGG	-	chr8_3:59405978-59405997	None:intergenic	30.0%
	TGGAGAAAAATAAGAGAGAA+AGG	-	chr8_3:59405979-59405998	None:intergenic	30.0%
	TTCATTAATCTTGTTCTTGC+AGG	+	chr8_3:59406030-59406049	Msa1298550:intron	30.0%
	TCATTAATCTTGTTCTTGCA+GGG	+	chr8_3:59406031-59406050	Msa1298550:intron	30.0%
	ATGTGTATTACATGATGATC+AGG	+	chr8_3:59406211-59406230	Msa1298550:intron	30.0%
!	AACAAAGCTTTCAGCATTTT+AGG	+	chr8_3:59406300-59406319	Msa1298550:CDS	30.0%
!	AATGTTTTCTTGACTGTTCA+TGG	+	chr8_3:59406585-59406604	Msa1298550:CDS	30.0%
	ATTGGTTATAGGGAAATGGA+AGG	-	chr8_3:59405764-59405783	None:intergenic	35.0%
	GTGAATTGGTTATAGGGAAA+TGG	-	chr8_3:59405768-59405787	None:intergenic	35.0%
!!	CCAATTCACCTTGTTATTTG+GGG	+	chr8_3:59405779-59405798	Msa1298550:five_prime_UTR	35.0%
	TTGGTTATCCCCAAATAACA+AGG	-	chr8_3:59405790-59405809	None:intergenic	35.0%
!	CTTTTACTTGTCTGTGAACT+TGG	-	chr8_3:59405809-59405828	None:intergenic	35.0%
	CAAGTTCACAGACAAGTAAA+AGG	+	chr8_3:59405807-59405826	Msa1298550:five_prime_UTR	35.0%
	AGTTCACAGACAAGTAAAAG+GGG	+	chr8_3:59405809-59405828	Msa1298550:five_prime_UTR	35.0%
	AATAAGAGAGAAAGGGGAAA+AGG	-	chr8_3:59405971-59405990	None:intergenic	35.0%
	GTTTCTGAATAAAAGGACAG+GGG	-	chr8_3:59406116-59406135	None:intergenic	35.0%
	GGTTTCTGAATAAAAGGACA+GGG	-	chr8_3:59406117-59406136	None:intergenic	35.0%
	AGAGAGGGTTTCTGAATAAA+AGG	-	chr8_3:59406123-59406142	None:intergenic	35.0%
!!	GAAAGCTTTGTTGTTCTCTT+CGG	-	chr8_3:59406292-59406311	None:intergenic	35.0%
!	GGTGCTTTTCGATCAATTTT+TGG	+	chr8_3:59406522-59406541	Msa1298550:CDS	35.0%
	TTCTCTTGATACTGGTAGTT+CGG	+	chr8_3:59406551-59406570	Msa1298550:CDS	35.0%
!!	AAACAAACATGGGTACTGAA+AGG	-	chr8_3:59406653-59406672	None:intergenic	35.0%
	ATTGGTTATAGGGAAATGGA+AGG	-	chr8_3:59405764-59405783	None:intergenic	35.0%
	GTGAATTGGTTATAGGGAAA+TGG	-	chr8_3:59405768-59405787	None:intergenic	35.0%
!!	CCAATTCACCTTGTTATTTG+GGG	+	chr8_3:59405779-59405798	Msa1298550:five_prime_UTR	35.0%
	TTGGTTATCCCCAAATAACA+AGG	-	chr8_3:59405790-59405809	None:intergenic	35.0%
!	CTTTTACTTGTCTGTGAACT+TGG	-	chr8_3:59405809-59405828	None:intergenic	35.0%
	CAAGTTCACAGACAAGTAAA+AGG	+	chr8_3:59405807-59405826	Msa1298550:five_prime_UTR	35.0%
	AGTTCACAGACAAGTAAAAG+GGG	+	chr8_3:59405809-59405828	Msa1298550:five_prime_UTR	35.0%
	AATAAGAGAGAAAGGGGAAA+AGG	-	chr8_3:59405971-59405990	None:intergenic	35.0%
	GTTTCTGAATAAAAGGACAG+GGG	-	chr8_3:59406116-59406135	None:intergenic	35.0%
	GGTTTCTGAATAAAAGGACA+GGG	-	chr8_3:59406117-59406136	None:intergenic	35.0%
	AGAGAGGGTTTCTGAATAAA+AGG	-	chr8_3:59406123-59406142	None:intergenic	35.0%
!!	GAAAGCTTTGTTGTTCTCTT+CGG	-	chr8_3:59406292-59406311	None:intergenic	35.0%
!	GGTGCTTTTCGATCAATTTT+TGG	+	chr8_3:59406522-59406541	Msa1298550:CDS	35.0%
	TTCTCTTGATACTGGTAGTT+CGG	+	chr8_3:59406551-59406570	Msa1298550:CDS	35.0%
!!	AAACAAACATGGGTACTGAA+AGG	-	chr8_3:59406653-59406672	None:intergenic	35.0%
	CCCCAAATAACAAGGTGAAT+TGG	-	chr8_3:59405782-59405801	None:intergenic	40.0%
!	GGATTGCATTTTGAACGGAA+CGG	-	chr8_3:59405878-59405897	None:intergenic	40.0%
!!!	CGAGTGGATTGCATTTTGAA+CGG	-	chr8_3:59405883-59405902	None:intergenic	40.0%
	AAACCCTCCAGAAACAACTA+GGG	+	chr8_3:59406086-59406105	Msa1298550:CDS	40.0%
!!	AAACCCTAGTTGTTTCTGGA+GGG	-	chr8_3:59406092-59406111	None:intergenic	40.0%
	GGGTTTCTGAATAAAAGGAC+AGG	-	chr8_3:59406118-59406137	None:intergenic	40.0%
	TGAGTCGACATTGGAGATTA+GGG	-	chr8_3:59406412-59406431	None:intergenic	40.0%
	ATGAGTCGACATTGGAGATT+AGG	-	chr8_3:59406413-59406432	None:intergenic	40.0%
!!	GTGGAAGAAGAATTGGTCTT+GGG	-	chr8_3:59406489-59406508	None:intergenic	40.0%
!	AGTGGAAGAAGAATTGGTCT+TGG	-	chr8_3:59406490-59406509	None:intergenic	40.0%
!!	GGTGCTATTTCTCTTGATAC+TGG	+	chr8_3:59406543-59406562	Msa1298550:CDS	40.0%
	TACGCTGCTATGTGAAATGT+AGG	+	chr8_3:59406624-59406643	Msa1298550:exon	40.0%
	TACCTGTGAGACTGTTTGAA+GGG	+	chr8_3:59406782-59406801	Msa1298550:three_prime_UTR	40.0%
	CCCCAAATAACAAGGTGAAT+TGG	-	chr8_3:59405782-59405801	None:intergenic	40.0%
!	GGATTGCATTTTGAACGGAA+CGG	-	chr8_3:59405878-59405897	None:intergenic	40.0%
!!!	CGAGTGGATTGCATTTTGAA+CGG	-	chr8_3:59405883-59405902	None:intergenic	40.0%
	AAACCCTCCAGAAACAACTA+GGG	+	chr8_3:59406086-59406105	Msa1298550:CDS	40.0%
!!	AAACCCTAGTTGTTTCTGGA+GGG	-	chr8_3:59406092-59406111	None:intergenic	40.0%
	GGGTTTCTGAATAAAAGGAC+AGG	-	chr8_3:59406118-59406137	None:intergenic	40.0%
	TGAGTCGACATTGGAGATTA+GGG	-	chr8_3:59406412-59406431	None:intergenic	40.0%
	ATGAGTCGACATTGGAGATT+AGG	-	chr8_3:59406413-59406432	None:intergenic	40.0%
!!	GTGGAAGAAGAATTGGTCTT+GGG	-	chr8_3:59406489-59406508	None:intergenic	40.0%
!	AGTGGAAGAAGAATTGGTCT+TGG	-	chr8_3:59406490-59406509	None:intergenic	40.0%
!!	GGTGCTATTTCTCTTGATAC+TGG	+	chr8_3:59406543-59406562	Msa1298550:CDS	40.0%
	TACGCTGCTATGTGAAATGT+AGG	+	chr8_3:59406624-59406643	Msa1298550:exon	40.0%
	TACCTGTGAGACTGTTTGAA+GGG	+	chr8_3:59406782-59406801	Msa1298550:three_prime_UTR	40.0%
	GGTTATAGGGAAATGGAAGG+AGG	-	chr8_3:59405761-59405780	None:intergenic	45.0%
!	GCATTTTGAACGGAACGGAA+CGG	-	chr8_3:59405873-59405892	None:intergenic	45.0%
	GAAGATGGTGAAGACGATGA+AGG	-	chr8_3:59405908-59405927	None:intergenic	45.0%
	AAGGATCGCAATGAGGAAGA+TGG	-	chr8_3:59405923-59405942	None:intergenic	45.0%
	AACCTGAACGATGGTAGCAT+GGG	-	chr8_3:59405947-59405966	None:intergenic	45.0%
	AAACCTGAACGATGGTAGCA+TGG	-	chr8_3:59405948-59405967	None:intergenic	45.0%
	GGAAAAGGAAACCTGAACGA+TGG	-	chr8_3:59405956-59405975	None:intergenic	45.0%
!!	TTGTTTCTGGAGGGTTTCGA+GGG	-	chr8_3:59406083-59406102	None:intergenic	45.0%
	GAAACCCTCCAGAAACAACT+AGG	+	chr8_3:59406085-59406104	Msa1298550:CDS	45.0%
!!	CAAACCCTAGTTGTTTCTGG+AGG	-	chr8_3:59406093-59406112	None:intergenic	45.0%
	ACCCAAACGCATTGCATCAA+CGG	-	chr8_3:59406442-59406461	None:intergenic	45.0%
!	AATGCGTTTGGGTTTGCACA+AGG	+	chr8_3:59406449-59406468	Msa1298550:CDS	45.0%
	CACAGCAGTGGAAGAAGAAT+TGG	-	chr8_3:59406496-59406515	None:intergenic	45.0%
	CAATTCTTCTTCCACTGCTG+TGG	+	chr8_3:59406494-59406513	Msa1298550:CDS	45.0%
	ACTGTTCATGGTCGTGATCT+TGG	+	chr8_3:59406597-59406616	Msa1298550:CDS	45.0%
	CTGTTCATGGTCGTGATCTT+GGG	+	chr8_3:59406598-59406617	Msa1298550:CDS	45.0%
	TGTTCATGGTCGTGATCTTG+GGG	+	chr8_3:59406599-59406618	Msa1298550:CDS	45.0%
	GTACCTGTGAGACTGTTTGA+AGG	+	chr8_3:59406781-59406800	Msa1298550:three_prime_UTR	45.0%
	ACCTGTGAGACTGTTTGAAG+GGG	+	chr8_3:59406783-59406802	Msa1298550:three_prime_UTR	45.0%
	GGTTATAGGGAAATGGAAGG+AGG	-	chr8_3:59405761-59405780	None:intergenic	45.0%
!	GCATTTTGAACGGAACGGAA+CGG	-	chr8_3:59405873-59405892	None:intergenic	45.0%
	GAAGATGGTGAAGACGATGA+AGG	-	chr8_3:59405908-59405927	None:intergenic	45.0%
	AAGGATCGCAATGAGGAAGA+TGG	-	chr8_3:59405923-59405942	None:intergenic	45.0%
	AACCTGAACGATGGTAGCAT+GGG	-	chr8_3:59405947-59405966	None:intergenic	45.0%
	AAACCTGAACGATGGTAGCA+TGG	-	chr8_3:59405948-59405967	None:intergenic	45.0%
	GGAAAAGGAAACCTGAACGA+TGG	-	chr8_3:59405956-59405975	None:intergenic	45.0%
!!	TTGTTTCTGGAGGGTTTCGA+GGG	-	chr8_3:59406083-59406102	None:intergenic	45.0%
	GAAACCCTCCAGAAACAACT+AGG	+	chr8_3:59406085-59406104	Msa1298550:CDS	45.0%
!!	CAAACCCTAGTTGTTTCTGG+AGG	-	chr8_3:59406093-59406112	None:intergenic	45.0%
	ACCCAAACGCATTGCATCAA+CGG	-	chr8_3:59406442-59406461	None:intergenic	45.0%
!	AATGCGTTTGGGTTTGCACA+AGG	+	chr8_3:59406449-59406468	Msa1298550:CDS	45.0%
	CACAGCAGTGGAAGAAGAAT+TGG	-	chr8_3:59406496-59406515	None:intergenic	45.0%
	CAATTCTTCTTCCACTGCTG+TGG	+	chr8_3:59406494-59406513	Msa1298550:CDS	45.0%
	ACTGTTCATGGTCGTGATCT+TGG	+	chr8_3:59406597-59406616	Msa1298550:CDS	45.0%
	CTGTTCATGGTCGTGATCTT+GGG	+	chr8_3:59406598-59406617	Msa1298550:CDS	45.0%
	TGTTCATGGTCGTGATCTTG+GGG	+	chr8_3:59406599-59406618	Msa1298550:CDS	45.0%
	GTACCTGTGAGACTGTTTGA+AGG	+	chr8_3:59406781-59406800	Msa1298550:three_prime_UTR	45.0%
	ACCTGTGAGACTGTTTGAAG+GGG	+	chr8_3:59406783-59406802	Msa1298550:three_prime_UTR	45.0%
	TTGAACGGAACGGAACGGAA+CGG	-	chr8_3:59405868-59405887	None:intergenic	50.0%
!	GAAGACGATGAAGGTACGAG+TGG	-	chr8_3:59405899-59405918	None:intergenic	50.0%
	ACCTGAACGATGGTAGCATG+GGG	-	chr8_3:59405946-59405965	None:intergenic	50.0%
	GTTTCGAGGGCGGATGAAAA+TGG	-	chr8_3:59406070-59406089	None:intergenic	50.0%
!!	GTTGTTTCTGGAGGGTTTCG+AGG	-	chr8_3:59406084-59406103	None:intergenic	50.0%
!	GGGCAAACCCTAGTTGTTTC+TGG	-	chr8_3:59406096-59406115	None:intergenic	50.0%
!	CTCTTCGGAGAAAGAAGCGT+GGG	-	chr8_3:59406277-59406296	None:intergenic	50.0%
	TCTCTTCGGAGAAAGAAGCG+TGG	-	chr8_3:59406278-59406297	None:intergenic	50.0%
	CAAGCGACGGTTCAACTCTT+TGG	-	chr8_3:59406388-59406407	None:intergenic	50.0%
	TGGAGATTAGGGACAAGCGA+CGG	-	chr8_3:59406401-59406420	None:intergenic	50.0%
	GGCACAAGATGAGTCGACAT+TGG	-	chr8_3:59406421-59406440	None:intergenic	50.0%
	TGCCGTTGATGCAATGCGTT+TGG	+	chr8_3:59406437-59406456	Msa1298550:CDS	50.0%
	GCCGTTGATGCAATGCGTTT+GGG	+	chr8_3:59406438-59406457	Msa1298550:CDS	50.0%
	TCTTCCACTGCTGTGGTTTG+TGG	+	chr8_3:59406501-59406520	Msa1298550:CDS	50.0%
	TACTGGTAGTTCGGAGTCTG+CGG	+	chr8_3:59406560-59406579	Msa1298550:CDS	50.0%
	ACCCCTTCAAACAGTCTCAC+AGG	-	chr8_3:59406787-59406806	None:intergenic	50.0%
	TTGAACGGAACGGAACGGAA+CGG	-	chr8_3:59405868-59405887	None:intergenic	50.0%
!	GAAGACGATGAAGGTACGAG+TGG	-	chr8_3:59405899-59405918	None:intergenic	50.0%
	ACCTGAACGATGGTAGCATG+GGG	-	chr8_3:59405946-59405965	None:intergenic	50.0%
	GTTTCGAGGGCGGATGAAAA+TGG	-	chr8_3:59406070-59406089	None:intergenic	50.0%
!!	GTTGTTTCTGGAGGGTTTCG+AGG	-	chr8_3:59406084-59406103	None:intergenic	50.0%
!	GGGCAAACCCTAGTTGTTTC+TGG	-	chr8_3:59406096-59406115	None:intergenic	50.0%
!	CTCTTCGGAGAAAGAAGCGT+GGG	-	chr8_3:59406277-59406296	None:intergenic	50.0%
	TCTCTTCGGAGAAAGAAGCG+TGG	-	chr8_3:59406278-59406297	None:intergenic	50.0%
	CAAGCGACGGTTCAACTCTT+TGG	-	chr8_3:59406388-59406407	None:intergenic	50.0%
	TGGAGATTAGGGACAAGCGA+CGG	-	chr8_3:59406401-59406420	None:intergenic	50.0%
	GGCACAAGATGAGTCGACAT+TGG	-	chr8_3:59406421-59406440	None:intergenic	50.0%
	TGCCGTTGATGCAATGCGTT+TGG	+	chr8_3:59406437-59406456	Msa1298550:CDS	50.0%
	GCCGTTGATGCAATGCGTTT+GGG	+	chr8_3:59406438-59406457	Msa1298550:CDS	50.0%
	TCTTCCACTGCTGTGGTTTG+TGG	+	chr8_3:59406501-59406520	Msa1298550:CDS	50.0%
	TACTGGTAGTTCGGAGTCTG+CGG	+	chr8_3:59406560-59406579	Msa1298550:CDS	50.0%
	ACCCCTTCAAACAGTCTCAC+AGG	-	chr8_3:59406787-59406806	None:intergenic	50.0%
	CATGGGGAAGGATCGCAATG+AGG	-	chr8_3:59405930-59405949	None:intergenic	55.0%
	GAACGATGGTAGCATGGGGA+AGG	-	chr8_3:59405942-59405961	None:intergenic	55.0%
	TCCCCATGCTACCATCGTTC+AGG	+	chr8_3:59405942-59405961	Msa1298550:CDS	55.0%
!	TTTCTGGAGGGTTTCGAGGG+CGG	-	chr8_3:59406080-59406099	None:intergenic	55.0%
	GCGACGGTTCAACTCTTTGG+CGG	-	chr8_3:59406385-59406404	None:intergenic	55.0%
!	GCGTTTGGGTTTGCACAAGG+TGG	+	chr8_3:59406452-59406471	Msa1298550:CDS	55.0%
	AGCACCACAAACCACAGCAG+TGG	-	chr8_3:59406508-59406527	None:intergenic	55.0%
	ACTGGTAGTTCGGAGTCTGC+GGG	+	chr8_3:59406561-59406580	Msa1298550:CDS	55.0%
	CATGGGGAAGGATCGCAATG+AGG	-	chr8_3:59405930-59405949	None:intergenic	55.0%
	GAACGATGGTAGCATGGGGA+AGG	-	chr8_3:59405942-59405961	None:intergenic	55.0%
	TCCCCATGCTACCATCGTTC+AGG	+	chr8_3:59405942-59405961	Msa1298550:CDS	55.0%
!	TTTCTGGAGGGTTTCGAGGG+CGG	-	chr8_3:59406080-59406099	None:intergenic	55.0%
	GCGACGGTTCAACTCTTTGG+CGG	-	chr8_3:59406385-59406404	None:intergenic	55.0%
!	GCGTTTGGGTTTGCACAAGG+TGG	+	chr8_3:59406452-59406471	Msa1298550:CDS	55.0%
	AGCACCACAAACCACAGCAG+TGG	-	chr8_3:59406508-59406527	None:intergenic	55.0%
	ACTGGTAGTTCGGAGTCTGC+GGG	+	chr8_3:59406561-59406580	Msa1298550:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	59405727	59407048	59405727	ID=Msa1298550;Name=Msa1298550
chr8_3	mRNA	59405727	59407048	59405727	ID=Msa1298550-mRNA-1;Parent=Msa1298550;Name=Msa1298550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=162\|1\|1\|1\|1\|1\|3\|410\|178
chr8_3	exon	59405727	59405963	59405727	ID=Msa1298550-mRNA-1:exon:17137;Parent=Msa1298550-mRNA-1
chr8_3	exon	59406052	59406107	59406052	ID=Msa1298550-mRNA-1:exon:17138;Parent=Msa1298550-mRNA-1
chr8_3	exon	59406233	59407048	59406233	ID=Msa1298550-mRNA-1:exon:17139;Parent=Msa1298550-mRNA-1
chr8_3	five_prime_UTR	59405727	59405888	59405727	ID=Msa1298550-mRNA-1:five_prime_utr;Parent=Msa1298550-mRNA-1
chr8_3	CDS	59405889	59405963	59405889	ID=Msa1298550-mRNA-1:cds;Parent=Msa1298550-mRNA-1
chr8_3	CDS	59406052	59406107	59406052	ID=Msa1298550-mRNA-1:cds;Parent=Msa1298550-mRNA-1
chr8_3	CDS	59406233	59406638	59406233	ID=Msa1298550-mRNA-1:cds;Parent=Msa1298550-mRNA-1
chr8_3	three_prime_UTR	59406639	59407048	59406639	ID=Msa1298550-mRNA-1:three_prime_utr;Parent=Msa1298550-mRNA-1

Gene Sequence

>Msa1298550

ATGCAATCCACTCGTACCTTCATCGTCTTCACCATCTTCCTCATTGCGATCCTTCCCCATGCTACCATCGTTCAGGGACACTCATTCTCACCATTTTCATCCGCCCTCGAAACCCTCCAGAAACAACTAGGGTACACTTTCAAGAGCATAAGTCTTCTTCGTCGTGCAATGACCCACGCTTCTTTCTCCGAAGAGAACAACAAAGCTTTCAGCATTTTAGGCGCTACAATCATTGAAACATCAGTTTCTTTCAATTTGCTTTCGAAAGACGTTGATATTTCCGCCAAAGAGTTGAACCGTCGCTTGTCCCTAATCTCCAATGTCGACTCATCTTGTGCCGTTGATGCAATGCGTTTGGGTTTGCACAAGGTGGTTCGTGTCTCGCCCAAGACCAATTCTTCTTCCACTGCTGTGGTTTGTGGTGCTTTTCGATCAATTTTTGGTGCTATTTCTCTTGATACTGGTAGTTCGGAGTCTGCGGGTAATGTTTTCTTGACTGTTCATGGTCGTGATCTTGGGGTTTACGCTGCTATGTGA

Protein sequence

>Msa1298550

MQSTRTFIVFTIFLIAILPHATIVQGHSFSPFSSALETLQKQLGYTFKSISLLRRAMTHASFSEENNKAFSILGATIIETSVSFNLLSKDVDISAKELNRRLSLISNVDSSCAVDAMRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFGAISLDTGSSESAGNVFLTVHGRDLGVYAAM*