AlfalfaGEDB | Msa1330890

M. sativa cultivar zhongmu-4 / Msa1330890

KEGG: -
GO: GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363
PFAM: PF14622.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330890	XP_003608942.1	97.191	178	5	0	1	178	1	178	5.24e-121	349

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330890	sp\|Q9FYL8\|NFD2_ARATH	57.047	149	64	0	30	178	42	190	4.66e-56	177

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330890	G7JNT6	97.191	178	5	0	1	178	1	178	2.50e-121	349

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1330890	0.829682	4.489361e-55	-8.615850e-47
Msa0006880	Msa1330890	-0.822420	2.391747e-53	-8.615850e-47
Msa0036370	Msa1330890	-0.832797	7.700258e-56	-8.615850e-47
Msa0043730	Msa1330890	-0.809774	1.602298e-50	-8.615850e-47
Msa0055150	Msa1330890	-0.803167	3.966768e-49	-8.615850e-47
Msa0072170	Msa1330890	-0.829697	4.451504e-55	-8.615850e-47
Msa0090030	Msa1330890	-0.877125	8.075030e-69	-8.615850e-47
Msa0092170	Msa1330890	-0.819022	1.444178e-52	-8.615850e-47
Msa0094010	Msa1330890	-0.802462	5.547266e-49	-8.615850e-47
Msa0099510	Msa1330890	-0.827061	1.925733e-54	-8.615850e-47
Msa0108870	Msa1330890	-0.800664	1.295859e-48	-8.615850e-47
Msa0112300	Msa1330890	0.849281	3.576670e-60	-8.615850e-47
Msa0120540	Msa1330890	-0.837564	4.825171e-57	-8.615850e-47
Msa0621650	Msa1330890	-0.802889	4.528809e-49	-8.615850e-47
Msa0628290	Msa1330890	-0.804380	2.221650e-49	-8.615850e-47
Msa0630950	Msa1330890	-0.821464	3.981964e-53	-8.615850e-47
Msa0649410	Msa1330890	-0.805191	1.503812e-49	-8.615850e-47
Msa0653320	Msa1330890	0.812039	5.181640e-51	-8.615850e-47
Msa0669190	Msa1330890	-0.801588	8.390062e-49	-8.615850e-47
Msa0693790	Msa1330890	-0.820100	8.196529e-53	-8.615850e-47
Msa0711490	Msa1330890	-0.813346	2.681591e-51	-8.615850e-47
Msa0715110	Msa1330890	-0.815033	1.137173e-51	-8.615850e-47
Msa0715140	Msa1330890	-0.816729	4.757924e-52	-8.615850e-47
Msa0715150	Msa1330890	-0.821834	3.269928e-53	-8.615850e-47
Msa0716420	Msa1330890	0.813653	2.295191e-51	-8.615850e-47
Msa0720370	Msa1330890	-0.804406	2.193850e-49	-8.615850e-47
Msa0791820	Msa1330890	-0.816724	4.771739e-52	-8.615850e-47
Msa0792090	Msa1330890	-0.820857	5.494434e-53	-8.615850e-47
Msa0799010	Msa1330890	0.832072	1.164789e-55	-8.615850e-47
Msa0820530	Msa1330890	0.819202	1.314172e-52	-8.615850e-47
Msa0131450	Msa1330890	-0.818467	1.930786e-52	-8.615850e-47
Msa0132560	Msa1330890	-0.805991	1.021820e-49	-8.615850e-47
Msa0140400	Msa1330890	-0.814134	1.797859e-51	-8.615850e-47
Msa0140520	Msa1330890	0.803196	3.912393e-49	-8.615850e-47
Msa0173330	Msa1330890	-0.862189	6.044689e-64	-8.615850e-47
Msa0175290	Msa1330890	0.851880	6.650654e-61	-8.615850e-47
Msa0177270	Msa1330890	-0.810603	1.061907e-50	-8.615850e-47
Msa0194720	Msa1330890	-0.806739	7.106930e-50	-8.615850e-47
Msa0208810	Msa1330890	-0.814629	1.397515e-51	-8.615850e-47
Msa0211650	Msa1330890	-0.813645	2.304263e-51	-8.615850e-47
Msa0212750	Msa1330890	0.858438	8.236404e-63	-8.615850e-47
Msa0223290	Msa1330890	-0.806503	7.968934e-50	-8.615850e-47
Msa0223920	Msa1330890	-0.809526	1.811595e-50	-8.615850e-47
Msa0227310	Msa1330890	0.828588	8.269847e-55	-8.615850e-47
Msa0229360	Msa1330890	-0.832597	8.633914e-56	-8.615850e-47
Msa1233950	Msa1330890	-0.816424	5.569615e-52	-8.615850e-47
Msa1235020	Msa1330890	-0.807153	5.808229e-50	-8.615850e-47
Msa1236070	Msa1330890	0.835098	2.044679e-56	-8.615850e-47
Msa1267260	Msa1330890	-0.815258	1.013798e-51	-8.615850e-47
Msa1267840	Msa1330890	-0.801580	8.419869e-49	-8.615850e-47
Msa1272520	Msa1330890	-0.805763	1.140869e-49	-8.615850e-47
Msa1280620	Msa1330890	-0.814173	1.762820e-51	-8.615850e-47
Msa1296300	Msa1330890	-0.813780	2.151929e-51	-8.615850e-47
Msa1298550	Msa1330890	0.971152	1.024350e-132	-8.615850e-47
Msa1303160	Msa1330890	-0.805164	1.523566e-49	-8.615850e-47
Msa1310660	Msa1330890	-0.833386	5.493234e-56	-8.615850e-47
Msa1330890	Msa1350690	-0.817808	2.721846e-52	-8.615850e-47
Msa1330890	Msa1363700	-0.858695	6.903575e-63	-8.615850e-47
Msa1330890	Msa1364060	-0.828784	7.414124e-55	-8.615850e-47
Msa1330890	Msa1365860	-0.811953	5.409163e-51	-8.615850e-47
Msa1330890	Msa1371090	-0.843698	1.194284e-58	-8.615850e-47
Msa1330890	Msa1396940	-0.802719	4.909221e-49	-8.615850e-47
Msa1330890	Msa1422910	-0.803991	2.676688e-49	-8.615850e-47
Msa1330890	Msa1425340	-0.801530	8.622506e-49	-8.615850e-47
Msa1330890	Msa1438450	-0.823795	1.142608e-53	-8.615850e-47
Msa1330890	Msa1443610	-0.804294	2.314255e-49	-8.615850e-47
Msa0377530	Msa1330890	-0.830457	2.905557e-55	-8.615850e-47
Msa0388030	Msa1330890	0.805051	1.608603e-49	-8.615850e-47
Msa0403190	Msa1330890	-0.803560	3.288795e-49	-8.615850e-47
Msa0419640	Msa1330890	0.809415	1.913608e-50	-8.615850e-47
Msa0426810	Msa1330890	-0.846967	1.556834e-59	-8.615850e-47
Msa0436190	Msa1330890	-0.809017	2.328945e-50	-8.615850e-47
Msa0462540	Msa1330890	-0.804722	1.884501e-49	-8.615850e-47
Msa0465920	Msa1330890	-0.825886	3.670767e-54	-8.615850e-47
Msa0465960	Msa1330890	-0.823929	1.062979e-53	-8.615850e-47
Msa0993240	Msa1330890	-0.824361	8.417109e-54	-8.615850e-47
Msa1002600	Msa1330890	0.834391	3.078903e-56	-8.615850e-47
Msa1010460	Msa1330890	-0.821215	4.545200e-53	-8.615850e-47
Msa1033520	Msa1330890	-0.823385	1.425106e-53	-8.615850e-47
Msa1036910	Msa1330890	-0.816497	5.363985e-52	-8.615850e-47
Msa1073400	Msa1330890	-0.802733	4.877896e-49	-8.615850e-47
Msa1079620	Msa1330890	-0.821825	3.286633e-53	-8.615850e-47
Msa1094540	Msa1330890	0.805293	1.431627e-49	-8.615850e-47
Msa0252240	Msa1330890	-0.802058	6.715927e-49	-8.615850e-47
Msa0265160	Msa1330890	-0.839264	1.757856e-57	-8.615850e-47
Msa0266210	Msa1330890	-0.817659	2.940299e-52	-8.615850e-47
Msa0287670	Msa1330890	-0.820120	8.110843e-53	-8.615850e-47
Msa0295000	Msa1330890	0.813157	2.950337e-51	-8.615850e-47
Msa0296980	Msa1330890	0.808927	2.435387e-50	-8.615850e-47
Msa0302650	Msa1330890	-0.808906	2.459977e-50	-8.615850e-47
Msa0303160	Msa1330890	-0.844174	8.902940e-59	-8.615850e-47
Msa0304840	Msa1330890	-0.813423	2.579353e-51	-8.615850e-47
Msa1125790	Msa1330890	0.800261	1.565564e-48	-8.615850e-47
Msa1126120	Msa1330890	0.812425	4.266688e-51	-8.615850e-47
Msa1160360	Msa1330890	-0.812010	5.257518e-51	-8.615850e-47
Msa1164020	Msa1330890	-0.827017	1.972882e-54	-8.615850e-47
Msa1172110	Msa1330890	0.806168	9.375722e-50	-8.615850e-47
Msa1172130	Msa1330890	0.981347	2.274100e-152	-8.615850e-47
Msa1182640	Msa1330890	-0.811874	5.628751e-51	-8.615850e-47
Msa1198880	Msa1330890	-0.824441	8.059404e-54	-8.615850e-47
Msa0505060	Msa1330890	-0.828388	9.245789e-55	-8.615850e-47
Msa0506940	Msa1330890	-0.817253	3.629955e-52	-8.615850e-47
Msa0513440	Msa1330890	-0.817758	2.793138e-52	-8.615850e-47
Msa0517490	Msa1330890	-0.814584	1.430001e-51	-8.615850e-47
Msa0524600	Msa1330890	-0.807945	3.943654e-50	-8.615850e-47
Msa0533960	Msa1330890	0.805692	1.180594e-49	-8.615850e-47
Msa0534410	Msa1330890	-0.850139	2.059131e-60	-8.615850e-47
Msa0590650	Msa1330890	-0.827205	1.778829e-54	-8.615850e-47
Msa0876860	Msa1330890	0.812910	3.341952e-51	-8.615850e-47
Msa0924150	Msa1330890	0.838271	3.176119e-57	-8.615850e-47
Msa0929960	Msa1330890	0.807029	6.172164e-50	-8.615850e-47
Msa0945100	Msa1330890	-0.824208	9.142830e-54	-8.615850e-47
Msa0945120	Msa1330890	-0.802186	6.322291e-49	-8.615850e-47
Msa0959010	Msa1330890	-0.804552	2.044684e-49	-8.615850e-47
Msa0963090	Msa1330890	0.805876	1.080120e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330890	MtrunA17_Chr4g0059241	97.191	178	5	0	1	178	1	178	4.82e-125	349
Msa1330890	MtrunA17_Chr4g0040671	94.949	99	5	0	1	99	1	99	1.38e-63	191

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1330890	AT1G24450.1	57.047	149	64	0	30	178	42	190	4.73e-57	177

Find 70 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAATTCACCTTGTTATT+TGG	0.076005	8_4:-50155333	Msa1330890:five_prime_UTR
GGGCAAACCCTAGTTGTTTC+TGG	0.221287	8_4:+50155022	None:intergenic
ACCAATTCACCTTGTTATTT+GGG	0.247352	8_4:-50155332	Msa1330890:five_prime_UTR
CAAGTTCACAGACAAGTAAA+AGG	0.271671	8_4:-50155303	Msa1330890:five_prime_UTR
TAACAAGGTGAATTGGTTAT+AGG	0.279800	8_4:+50155338	None:intergenic
ACTGTTCATGGTCGTGATCT+TGG	0.284490	8_4:-50154519	Msa1330890:CDS
TAATTAACTTAGGGTATGTT+TGG	0.308800	8_4:-50154380	Msa1330890:three_prime_UTR
GGTGCTATTTCTCTTGATAC+TGG	0.322054	8_4:-50154573	Msa1330890:CDS
CTGTTCATGGTCGTGATCTT+GGG	0.329301	8_4:-50154518	Msa1330890:CDS
CAAGCGACGGTTCAACTCTT+TGG	0.330495	8_4:+50154731	None:intergenic
TGCCGTTGATGCAATGCGTT+TGG	0.351005	8_4:-50154679	Msa1330890:CDS
TCCCCATGCTACCATCGTTC+AGG	0.352766	8_4:-50155173	Msa1330890:intron
AACAAGGTGAATTGGTTATA+GGG	0.357540	8_4:+50155339	None:intergenic
ATGAGTCGACATTGGAGATT+AGG	0.358387	8_4:+50154706	None:intergenic
TTCTCTTGATACTGGTAGTT+CGG	0.366585	8_4:-50154565	Msa1330890:CDS
TTAGTTAATCTAATTAACTT+AGG	0.370936	8_4:-50154390	Msa1330890:three_prime_UTR
CCCCAAATAACAAGGTGAAT+TGG	0.371013	8_4:+50155331	None:intergenic
TCTTCCACTGCTGTGGTTTG+TGG	0.372837	8_4:-50154615	Msa1330890:CDS
GTTTCGAGGGCGGATGAAAA+TGG	0.383610	8_4:+50155048	None:intergenic
CACAGCAGTGGAAGAAGAAT+TGG	0.384003	8_4:+50154623	None:intergenic
GAAAGCTTTGTTGTTCTCTT+CGG	0.417815	8_4:+50154827	None:intergenic
GTGAATTGGTTATAGGGAAA+TGG	0.428756	8_4:+50155345	None:intergenic
TGAGTCGACATTGGAGATTA+GGG	0.444608	8_4:+50154707	None:intergenic
CAATTCTTCTTCCACTGCTG+TGG	0.459397	8_4:-50154622	Msa1330890:CDS
TAGTTAATCTAATTAACTTA+GGG	0.460003	8_4:-50154389	Msa1330890:three_prime_UTR
GCCGTTGATGCAATGCGTTT+GGG	0.462426	8_4:-50154678	Msa1330890:CDS
GTTGTTTCTGGAGGGTTTCG+AGG	0.471552	8_4:+50155034	None:intergenic
AAGTTCACAGACAAGTAAAA+GGG	0.478906	8_4:-50155302	Msa1330890:five_prime_UTR
ACCCAAACGCATTGCATCAA+CGG	0.482026	8_4:+50154677	None:intergenic
AGTGGAAGAAGAATTGGTCT+TGG	0.487457	8_4:+50154629	None:intergenic
GTGGAAGAAGAATTGGTCTT+GGG	0.501015	8_4:+50154630	None:intergenic
CAAACCCTAGTTGTTTCTGG+AGG	0.510081	8_4:+50155025	None:intergenic
TTGTTTCTGGAGGGTTTCGA+GGG	0.515270	8_4:+50155035	None:intergenic
GAAACCCTCCAGAAACAACT+AGG	0.522143	8_4:-50155030	Msa1330890:CDS
TACTGGTAGTTCGGAGTCTG+CGG	0.528726	8_4:-50154556	Msa1330890:CDS
AACCTGAACGATGGTAGCAT+GGG	0.530303	8_4:+50155171	None:intergenic
AAACCCTAGTTGTTTCTGGA+GGG	0.539563	8_4:+50155026	None:intergenic
ACCCCTTCAAACAGTCTCAC+AGG	0.540513	8_4:+50154332	None:intergenic
AAACCTGAACGATGGTAGCA+TGG	0.544111	8_4:+50155170	None:intergenic
TACCTGTGAGACTGTTTGAA+GGG	0.550478	8_4:-50154334	Msa1330890:three_prime_UTR
GTACCTGTGAGACTGTTTGA+AGG	0.554837	8_4:-50154335	Msa1330890:three_prime_UTR
CTCTTCGGAGAAAGAAGCGT+GGG	0.560654	8_4:+50154842	None:intergenic
TTTCTGGAGGGTTTCGAGGG+CGG	0.561747	8_4:+50155038	None:intergenic
TCTTCAAAATGAAACAAACA+TGG	0.566640	8_4:+50154455	None:intergenic
GCGACGGTTCAACTCTTTGG+CGG	0.570405	8_4:+50154734	None:intergenic
CCAATTCACCTTGTTATTTG+GGG	0.571549	8_4:-50155331	Msa1330890:five_prime_UTR
AAGGATCGCAATGAGGAAGA+TGG	0.572481	8_4:+50155195	None:intergenic
TACGCTGCTATGTGAAATGT+AGG	0.575316	8_4:-50154492	Msa1330890:exon
ACTGGTAGTTCGGAGTCTGC+GGG	0.579104	8_4:-50154555	Msa1330890:CDS
TGTTCATGGTCGTGATCTTG+GGG	0.587592	8_4:-50154517	Msa1330890:CDS
GGCACAAGATGAGTCGACAT+TGG	0.593448	8_4:+50154698	None:intergenic
AGCACCACAAACCACAGCAG+TGG	0.604051	8_4:+50154611	None:intergenic
GAAGATGGTGAAGACGATGA+AGG	0.605415	8_4:+50155210	None:intergenic
ACCTGTGAGACTGTTTGAAG+GGG	0.609777	8_4:-50154333	Msa1330890:three_prime_UTR
GAACGATGGTAGCATGGGGA+AGG	0.610380	8_4:+50155176	None:intergenic
AAACAAACATGGGTACTGAA+AGG	0.611119	8_4:+50154466	None:intergenic
GCGTTTGGGTTTGCACAAGG+TGG	0.620407	8_4:-50154664	Msa1330890:CDS
GGTTATAGGGAAATGGAAGG+AGG	0.628587	8_4:+50155352	None:intergenic
TTGGTTATCCCCAAATAACA+AGG	0.629002	8_4:+50155323	None:intergenic
AATGCGTTTGGGTTTGCACA+AGG	0.636231	8_4:-50154667	Msa1330890:CDS
AAACCCTCCAGAAACAACTA+GGG	0.642154	8_4:-50155029	Msa1330890:intron
ATTGGTTATAGGGAAATGGA+AGG	0.645859	8_4:+50155349	None:intergenic
CATGGGGAAGGATCGCAATG+AGG	0.653551	8_4:+50155188	None:intergenic
GAAGACGATGAAGGTACGAG+TGG	0.655609	8_4:+50155219	None:intergenic
CTTCAAAATGAAACAAACAT+GGG	0.663181	8_4:+50154456	None:intergenic
AGTTCACAGACAAGTAAAAG+GGG	0.666189	8_4:-50155301	Msa1330890:five_prime_UTR
TGGAGATTAGGGACAAGCGA+CGG	0.678870	8_4:+50154718	None:intergenic
ACCTGAACGATGGTAGCATG+GGG	0.683989	8_4:+50155172	None:intergenic
TCTCTTCGGAGAAAGAAGCG+TGG	0.707050	8_4:+50154841	None:intergenic
GGAAAAGGAAACCTGAACGA+TGG	0.708272	8_4:+50155162	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAACAAATTAAATAGAATT+TGG	+	chr8_4:50154544-50154563	None:intergenic	10.0%
!!	TTAACAAATTAAATAGAATT+TGG	+	chr8_4:50154544-50154563	None:intergenic	10.0%
!!	TTAGTTAATCTAATTAACTT+AGG	-	chr8_4:50155083-50155102	Msa1330890:intron	15.0%
!!	TAGTTAATCTAATTAACTTA+GGG	-	chr8_4:50155084-50155103	Msa1330890:intron	15.0%
!!	TTAGTTAATCTAATTAACTT+AGG	-	chr8_4:50155083-50155102	Msa1330890:intron	15.0%
!!	TAGTTAATCTAATTAACTTA+GGG	-	chr8_4:50155084-50155103	Msa1330890:intron	15.0%
!!!	ATGAAAACTGTTTCTATTAA+TGG	+	chr8_4:50154373-50154392	None:intergenic	20.0%
!!	TAGAATAAAATGAAAAGAGA+GGG	+	chr8_4:50154496-50154515	None:intergenic	20.0%
!!	ATAGAATAAAATGAAAAGAG+AGG	+	chr8_4:50154497-50154516	None:intergenic	20.0%
!!!	ATGAAAACTGTTTCTATTAA+TGG	+	chr8_4:50154373-50154392	None:intergenic	20.0%
!!	TAGAATAAAATGAAAAGAGA+GGG	+	chr8_4:50154496-50154515	None:intergenic	20.0%
!!	ATAGAATAAAATGAAAAGAG+AGG	+	chr8_4:50154497-50154516	None:intergenic	20.0%
!!!	TTAATGGATTGTTTCGATTT+TGG	+	chr8_4:50154357-50154376	None:intergenic	25.0%
!	CTTCAAAATGAAACAAACAT+GGG	+	chr8_4:50155020-50155039	None:intergenic	25.0%
!	TCTTCAAAATGAAACAAACA+TGG	+	chr8_4:50155021-50155040	None:intergenic	25.0%
!	TAATTAACTTAGGGTATGTT+TGG	-	chr8_4:50155093-50155112	Msa1330890:intron	25.0%
!	ATCTTCTTCTTTATAGAAAG+AGG	+	chr8_4:50154092-50154111	None:intergenic	25.0%
!!!	TTAATGGATTGTTTCGATTT+TGG	+	chr8_4:50154357-50154376	None:intergenic	25.0%
!	CTTCAAAATGAAACAAACAT+GGG	+	chr8_4:50155020-50155039	None:intergenic	25.0%
!	TCTTCAAAATGAAACAAACA+TGG	+	chr8_4:50155021-50155040	None:intergenic	25.0%
!	TAATTAACTTAGGGTATGTT+TGG	-	chr8_4:50155093-50155112	Msa1330890:intron	25.0%
	AACAAGGTGAATTGGTTATA+GGG	+	chr8_4:50154137-50154156	None:intergenic	30.0%
	TAACAAGGTGAATTGGTTAT+AGG	+	chr8_4:50154138-50154157	None:intergenic	30.0%
!!	AACCAATTCACCTTGTTATT+TGG	-	chr8_4:50154140-50154159	Msa1330890:three_prime_UTR	30.0%
!!	ACCAATTCACCTTGTTATTT+GGG	-	chr8_4:50154141-50154160	Msa1330890:three_prime_UTR	30.0%
	AAGTTCACAGACAAGTAAAA+GGG	-	chr8_4:50154171-50154190	Msa1330890:three_prime_UTR	30.0%
	GAGAAAAATAAGAGAGAAAG+GGG	+	chr8_4:50154335-50154354	None:intergenic	30.0%
	GGAGAAAAATAAGAGAGAAA+GGG	+	chr8_4:50154336-50154355	None:intergenic	30.0%
	TGGAGAAAAATAAGAGAGAA+AGG	+	chr8_4:50154337-50154356	None:intergenic	30.0%
	TTCATTAATCTTGTACTTGC+AGG	-	chr8_4:50154388-50154407	Msa1330890:three_prime_UTR	30.0%
	TCATTAATCTTGTACTTGCA+GGG	-	chr8_4:50154389-50154408	Msa1330890:three_prime_UTR	30.0%
	ATGTGTATTACATGATGATC+AGG	-	chr8_4:50154568-50154587	Msa1330890:CDS	30.0%
!	AACAAAGCTTTCAGCATTTT+AGG	-	chr8_4:50154657-50154676	Msa1330890:CDS	30.0%
!	AATGTTTTCTTGACTGTTCA+TGG	-	chr8_4:50154942-50154961	Msa1330890:intron	30.0%
	AACAAGGTGAATTGGTTATA+GGG	+	chr8_4:50154137-50154156	None:intergenic	30.0%
	TAACAAGGTGAATTGGTTAT+AGG	+	chr8_4:50154138-50154157	None:intergenic	30.0%
!!	AACCAATTCACCTTGTTATT+TGG	-	chr8_4:50154140-50154159	Msa1330890:three_prime_UTR	30.0%
!!	ACCAATTCACCTTGTTATTT+GGG	-	chr8_4:50154141-50154160	Msa1330890:three_prime_UTR	30.0%
	AAGTTCACAGACAAGTAAAA+GGG	-	chr8_4:50154171-50154190	Msa1330890:three_prime_UTR	30.0%
	GAGAAAAATAAGAGAGAAAG+GGG	+	chr8_4:50154335-50154354	None:intergenic	30.0%
	GGAGAAAAATAAGAGAGAAA+GGG	+	chr8_4:50154336-50154355	None:intergenic	30.0%
	TGGAGAAAAATAAGAGAGAA+AGG	+	chr8_4:50154337-50154356	None:intergenic	30.0%
	TTCATTAATCTTGTACTTGC+AGG	-	chr8_4:50154388-50154407	Msa1330890:three_prime_UTR	30.0%
	TCATTAATCTTGTACTTGCA+GGG	-	chr8_4:50154389-50154408	Msa1330890:three_prime_UTR	30.0%
	ATGTGTATTACATGATGATC+AGG	-	chr8_4:50154568-50154587	Msa1330890:CDS	30.0%
!	AACAAAGCTTTCAGCATTTT+AGG	-	chr8_4:50154657-50154676	Msa1330890:CDS	30.0%
!	AATGTTTTCTTGACTGTTCA+TGG	-	chr8_4:50154942-50154961	Msa1330890:intron	30.0%
	ATTGGTTATAGGGAAATGGA+AGG	+	chr8_4:50154127-50154146	None:intergenic	35.0%
	GTGAATTGGTTATAGGGAAA+TGG	+	chr8_4:50154131-50154150	None:intergenic	35.0%
!!	CCAATTCACCTTGTTATTTG+GGG	-	chr8_4:50154142-50154161	Msa1330890:three_prime_UTR	35.0%
	TTGGTTATCCCCAAATAACA+AGG	+	chr8_4:50154153-50154172	None:intergenic	35.0%
!	CTTTTACTTGTCTGTGAACT+TGG	+	chr8_4:50154172-50154191	None:intergenic	35.0%
	CAAGTTCACAGACAAGTAAA+AGG	-	chr8_4:50154170-50154189	Msa1330890:three_prime_UTR	35.0%
	AGTTCACAGACAAGTAAAAG+GGG	-	chr8_4:50154172-50154191	Msa1330890:three_prime_UTR	35.0%
	AATAAGAGAGAAAGGGGAAA+AGG	+	chr8_4:50154329-50154348	None:intergenic	35.0%
	GTTTCTGAATAAAAGGACAG+GGG	+	chr8_4:50154474-50154493	None:intergenic	35.0%
	GGTTTCTGAATAAAAGGACA+GGG	+	chr8_4:50154475-50154494	None:intergenic	35.0%
	AGAGAGGGTTTCTGAATAAA+AGG	+	chr8_4:50154481-50154500	None:intergenic	35.0%
!!	GAAAGCTTTGTTGTTCTCTT+CGG	+	chr8_4:50154649-50154668	None:intergenic	35.0%
!	GGTGCTTTTCGATCAATTTT+TGG	-	chr8_4:50154879-50154898	Msa1330890:CDS	35.0%
	TTCTCTTGATACTGGTAGTT+CGG	-	chr8_4:50154908-50154927	Msa1330890:intron	35.0%
!!	AAACAAACATGGGTACTGAA+AGG	+	chr8_4:50155010-50155029	None:intergenic	35.0%
	ATTGGTTATAGGGAAATGGA+AGG	+	chr8_4:50154127-50154146	None:intergenic	35.0%
	GTGAATTGGTTATAGGGAAA+TGG	+	chr8_4:50154131-50154150	None:intergenic	35.0%
!!	CCAATTCACCTTGTTATTTG+GGG	-	chr8_4:50154142-50154161	Msa1330890:three_prime_UTR	35.0%
	TTGGTTATCCCCAAATAACA+AGG	+	chr8_4:50154153-50154172	None:intergenic	35.0%
!	CTTTTACTTGTCTGTGAACT+TGG	+	chr8_4:50154172-50154191	None:intergenic	35.0%
	CAAGTTCACAGACAAGTAAA+AGG	-	chr8_4:50154170-50154189	Msa1330890:three_prime_UTR	35.0%
	AGTTCACAGACAAGTAAAAG+GGG	-	chr8_4:50154172-50154191	Msa1330890:three_prime_UTR	35.0%
	AATAAGAGAGAAAGGGGAAA+AGG	+	chr8_4:50154329-50154348	None:intergenic	35.0%
	GTTTCTGAATAAAAGGACAG+GGG	+	chr8_4:50154474-50154493	None:intergenic	35.0%
	GGTTTCTGAATAAAAGGACA+GGG	+	chr8_4:50154475-50154494	None:intergenic	35.0%
	AGAGAGGGTTTCTGAATAAA+AGG	+	chr8_4:50154481-50154500	None:intergenic	35.0%
!!	GAAAGCTTTGTTGTTCTCTT+CGG	+	chr8_4:50154649-50154668	None:intergenic	35.0%
!	GGTGCTTTTCGATCAATTTT+TGG	-	chr8_4:50154879-50154898	Msa1330890:CDS	35.0%
	TTCTCTTGATACTGGTAGTT+CGG	-	chr8_4:50154908-50154927	Msa1330890:intron	35.0%
!!	AAACAAACATGGGTACTGAA+AGG	+	chr8_4:50155010-50155029	None:intergenic	35.0%
	CCCCAAATAACAAGGTGAAT+TGG	+	chr8_4:50154145-50154164	None:intergenic	40.0%
!	GGATTGCATTTTGAACGGAA+CGG	+	chr8_4:50154236-50154255	None:intergenic	40.0%
!!!	CGAGTGGATTGCATTTTGAA+CGG	+	chr8_4:50154241-50154260	None:intergenic	40.0%
	AAACCCTCCAGAAACAACTA+GGG	-	chr8_4:50154444-50154463	Msa1330890:three_prime_UTR	40.0%
!!	AAACCCTAGTTGTTTCTGGA+GGG	+	chr8_4:50154450-50154469	None:intergenic	40.0%
	GGGTTTCTGAATAAAAGGAC+AGG	+	chr8_4:50154476-50154495	None:intergenic	40.0%
	TGAGTCGACATTGGAGATTA+GGG	+	chr8_4:50154769-50154788	None:intergenic	40.0%
	ATGAGTCGACATTGGAGATT+AGG	+	chr8_4:50154770-50154789	None:intergenic	40.0%
!!	GTGGAAGAAGAATTGGTCTT+GGG	+	chr8_4:50154846-50154865	None:intergenic	40.0%
!	AGTGGAAGAAGAATTGGTCT+TGG	+	chr8_4:50154847-50154866	None:intergenic	40.0%
!!	GGTGCTATTTCTCTTGATAC+TGG	-	chr8_4:50154900-50154919	Msa1330890:intron	40.0%
	TACGCTGCTATGTGAAATGT+AGG	-	chr8_4:50154981-50155000	Msa1330890:intron	40.0%
	TACCTGTGAGACTGTTTGAA+GGG	-	chr8_4:50155139-50155158	Msa1330890:intron	40.0%
	CCCCAAATAACAAGGTGAAT+TGG	+	chr8_4:50154145-50154164	None:intergenic	40.0%
!	GGATTGCATTTTGAACGGAA+CGG	+	chr8_4:50154236-50154255	None:intergenic	40.0%
!!!	CGAGTGGATTGCATTTTGAA+CGG	+	chr8_4:50154241-50154260	None:intergenic	40.0%
	AAACCCTCCAGAAACAACTA+GGG	-	chr8_4:50154444-50154463	Msa1330890:three_prime_UTR	40.0%
!!	AAACCCTAGTTGTTTCTGGA+GGG	+	chr8_4:50154450-50154469	None:intergenic	40.0%
	GGGTTTCTGAATAAAAGGAC+AGG	+	chr8_4:50154476-50154495	None:intergenic	40.0%
	TGAGTCGACATTGGAGATTA+GGG	+	chr8_4:50154769-50154788	None:intergenic	40.0%
	ATGAGTCGACATTGGAGATT+AGG	+	chr8_4:50154770-50154789	None:intergenic	40.0%
!!	GTGGAAGAAGAATTGGTCTT+GGG	+	chr8_4:50154846-50154865	None:intergenic	40.0%
!	AGTGGAAGAAGAATTGGTCT+TGG	+	chr8_4:50154847-50154866	None:intergenic	40.0%
!!	GGTGCTATTTCTCTTGATAC+TGG	-	chr8_4:50154900-50154919	Msa1330890:intron	40.0%
	TACGCTGCTATGTGAAATGT+AGG	-	chr8_4:50154981-50155000	Msa1330890:intron	40.0%
	TACCTGTGAGACTGTTTGAA+GGG	-	chr8_4:50155139-50155158	Msa1330890:intron	40.0%
	GGTTATAGGGAAATGGAAGG+AGG	+	chr8_4:50154124-50154143	None:intergenic	45.0%
!	GCATTTTGAACGGAACGGAA+CGG	+	chr8_4:50154231-50154250	None:intergenic	45.0%
	GAAGATGGTGAAGACGATGA+AGG	+	chr8_4:50154266-50154285	None:intergenic	45.0%
	AAGGATCGCAATGAGGAAGA+TGG	+	chr8_4:50154281-50154300	None:intergenic	45.0%
	AACCTGAACGATGGTAGCAT+GGG	+	chr8_4:50154305-50154324	None:intergenic	45.0%
	AAACCTGAACGATGGTAGCA+TGG	+	chr8_4:50154306-50154325	None:intergenic	45.0%
	GGAAAAGGAAACCTGAACGA+TGG	+	chr8_4:50154314-50154333	None:intergenic	45.0%
!!	TTGTTTCTGGAGGGTTTCGA+GGG	+	chr8_4:50154441-50154460	None:intergenic	45.0%
	GAAACCCTCCAGAAACAACT+AGG	-	chr8_4:50154443-50154462	Msa1330890:three_prime_UTR	45.0%
!!	CAAACCCTAGTTGTTTCTGG+AGG	+	chr8_4:50154451-50154470	None:intergenic	45.0%
	ACCCAAACGCATTGCATCAA+CGG	+	chr8_4:50154799-50154818	None:intergenic	45.0%
!	AATGCGTTTGGGTTTGCACA+AGG	-	chr8_4:50154806-50154825	Msa1330890:CDS	45.0%
	CACAGCAGTGGAAGAAGAAT+TGG	+	chr8_4:50154853-50154872	None:intergenic	45.0%
	CAATTCTTCTTCCACTGCTG+TGG	-	chr8_4:50154851-50154870	Msa1330890:CDS	45.0%
	ACTGTTCATGGTCGTGATCT+TGG	-	chr8_4:50154954-50154973	Msa1330890:intron	45.0%
	CTGTTCATGGTCGTGATCTT+GGG	-	chr8_4:50154955-50154974	Msa1330890:intron	45.0%
	TGTTCATGGTCGTGATCTTG+GGG	-	chr8_4:50154956-50154975	Msa1330890:intron	45.0%
	GTACCTGTGAGACTGTTTGA+AGG	-	chr8_4:50155138-50155157	Msa1330890:intron	45.0%
	ACCTGTGAGACTGTTTGAAG+GGG	-	chr8_4:50155140-50155159	Msa1330890:intron	45.0%
	GGTTATAGGGAAATGGAAGG+AGG	+	chr8_4:50154124-50154143	None:intergenic	45.0%
!	GCATTTTGAACGGAACGGAA+CGG	+	chr8_4:50154231-50154250	None:intergenic	45.0%
	GAAGATGGTGAAGACGATGA+AGG	+	chr8_4:50154266-50154285	None:intergenic	45.0%
	AAGGATCGCAATGAGGAAGA+TGG	+	chr8_4:50154281-50154300	None:intergenic	45.0%
	AACCTGAACGATGGTAGCAT+GGG	+	chr8_4:50154305-50154324	None:intergenic	45.0%
	AAACCTGAACGATGGTAGCA+TGG	+	chr8_4:50154306-50154325	None:intergenic	45.0%
	GGAAAAGGAAACCTGAACGA+TGG	+	chr8_4:50154314-50154333	None:intergenic	45.0%
!!	TTGTTTCTGGAGGGTTTCGA+GGG	+	chr8_4:50154441-50154460	None:intergenic	45.0%
	GAAACCCTCCAGAAACAACT+AGG	-	chr8_4:50154443-50154462	Msa1330890:three_prime_UTR	45.0%
!!	CAAACCCTAGTTGTTTCTGG+AGG	+	chr8_4:50154451-50154470	None:intergenic	45.0%
	ACCCAAACGCATTGCATCAA+CGG	+	chr8_4:50154799-50154818	None:intergenic	45.0%
!	AATGCGTTTGGGTTTGCACA+AGG	-	chr8_4:50154806-50154825	Msa1330890:CDS	45.0%
	CACAGCAGTGGAAGAAGAAT+TGG	+	chr8_4:50154853-50154872	None:intergenic	45.0%
	CAATTCTTCTTCCACTGCTG+TGG	-	chr8_4:50154851-50154870	Msa1330890:CDS	45.0%
	ACTGTTCATGGTCGTGATCT+TGG	-	chr8_4:50154954-50154973	Msa1330890:intron	45.0%
	CTGTTCATGGTCGTGATCTT+GGG	-	chr8_4:50154955-50154974	Msa1330890:intron	45.0%
	TGTTCATGGTCGTGATCTTG+GGG	-	chr8_4:50154956-50154975	Msa1330890:intron	45.0%
	GTACCTGTGAGACTGTTTGA+AGG	-	chr8_4:50155138-50155157	Msa1330890:intron	45.0%
	ACCTGTGAGACTGTTTGAAG+GGG	-	chr8_4:50155140-50155159	Msa1330890:intron	45.0%
!	GAAGACGATGAAGGTACGAG+TGG	+	chr8_4:50154257-50154276	None:intergenic	50.0%
	ACCTGAACGATGGTAGCATG+GGG	+	chr8_4:50154304-50154323	None:intergenic	50.0%
	GTTTCGAGGGCGGATGAAAA+TGG	+	chr8_4:50154428-50154447	None:intergenic	50.0%
!!	GTTGTTTCTGGAGGGTTTCG+AGG	+	chr8_4:50154442-50154461	None:intergenic	50.0%
!	GGGCAAACCCTAGTTGTTTC+TGG	+	chr8_4:50154454-50154473	None:intergenic	50.0%
!	CTCTTCGGAGAAAGAAGCGT+GGG	+	chr8_4:50154634-50154653	None:intergenic	50.0%
	TCTCTTCGGAGAAAGAAGCG+TGG	+	chr8_4:50154635-50154654	None:intergenic	50.0%
	CAAGCGACGGTTCAACTCTT+TGG	+	chr8_4:50154745-50154764	None:intergenic	50.0%
	TGGAGATTAGGGACAAGCGA+CGG	+	chr8_4:50154758-50154777	None:intergenic	50.0%
	GGCACAAGATGAGTCGACAT+TGG	+	chr8_4:50154778-50154797	None:intergenic	50.0%
	TGCCGTTGATGCAATGCGTT+TGG	-	chr8_4:50154794-50154813	Msa1330890:CDS	50.0%
	GCCGTTGATGCAATGCGTTT+GGG	-	chr8_4:50154795-50154814	Msa1330890:CDS	50.0%
	TCTTCCACTGCTGTGGTTTG+TGG	-	chr8_4:50154858-50154877	Msa1330890:CDS	50.0%
	TACTGGTAGTTCGGAGTCTG+CGG	-	chr8_4:50154917-50154936	Msa1330890:intron	50.0%
	ACCCCTTCAAACAGTCTCAC+AGG	+	chr8_4:50155144-50155163	None:intergenic	50.0%
!	GAAGACGATGAAGGTACGAG+TGG	+	chr8_4:50154257-50154276	None:intergenic	50.0%
	ACCTGAACGATGGTAGCATG+GGG	+	chr8_4:50154304-50154323	None:intergenic	50.0%
	GTTTCGAGGGCGGATGAAAA+TGG	+	chr8_4:50154428-50154447	None:intergenic	50.0%
!!	GTTGTTTCTGGAGGGTTTCG+AGG	+	chr8_4:50154442-50154461	None:intergenic	50.0%
!	GGGCAAACCCTAGTTGTTTC+TGG	+	chr8_4:50154454-50154473	None:intergenic	50.0%
!	CTCTTCGGAGAAAGAAGCGT+GGG	+	chr8_4:50154634-50154653	None:intergenic	50.0%
	TCTCTTCGGAGAAAGAAGCG+TGG	+	chr8_4:50154635-50154654	None:intergenic	50.0%
	CAAGCGACGGTTCAACTCTT+TGG	+	chr8_4:50154745-50154764	None:intergenic	50.0%
	TGGAGATTAGGGACAAGCGA+CGG	+	chr8_4:50154758-50154777	None:intergenic	50.0%
	GGCACAAGATGAGTCGACAT+TGG	+	chr8_4:50154778-50154797	None:intergenic	50.0%
	TGCCGTTGATGCAATGCGTT+TGG	-	chr8_4:50154794-50154813	Msa1330890:CDS	50.0%
	GCCGTTGATGCAATGCGTTT+GGG	-	chr8_4:50154795-50154814	Msa1330890:CDS	50.0%
	TCTTCCACTGCTGTGGTTTG+TGG	-	chr8_4:50154858-50154877	Msa1330890:CDS	50.0%
	TACTGGTAGTTCGGAGTCTG+CGG	-	chr8_4:50154917-50154936	Msa1330890:intron	50.0%
	ACCCCTTCAAACAGTCTCAC+AGG	+	chr8_4:50155144-50155163	None:intergenic	50.0%
	CATGGGGAAGGATCGCAATG+AGG	+	chr8_4:50154288-50154307	None:intergenic	55.0%
	GAACGATGGTAGCATGGGGA+AGG	+	chr8_4:50154300-50154319	None:intergenic	55.0%
	TCCCCATGCTACCATCGTTC+AGG	-	chr8_4:50154300-50154319	Msa1330890:three_prime_UTR	55.0%
!	TTTCTGGAGGGTTTCGAGGG+CGG	+	chr8_4:50154438-50154457	None:intergenic	55.0%
	GCGACGGTTCAACTCTTTGG+CGG	+	chr8_4:50154742-50154761	None:intergenic	55.0%
!	GCGTTTGGGTTTGCACAAGG+TGG	-	chr8_4:50154809-50154828	Msa1330890:CDS	55.0%
	AGCACCACAAACCACAGCAG+TGG	+	chr8_4:50154865-50154884	None:intergenic	55.0%
	ACTGGTAGTTCGGAGTCTGC+GGG	-	chr8_4:50154918-50154937	Msa1330890:intron	55.0%
	CATGGGGAAGGATCGCAATG+AGG	+	chr8_4:50154288-50154307	None:intergenic	55.0%
	GAACGATGGTAGCATGGGGA+AGG	+	chr8_4:50154300-50154319	None:intergenic	55.0%
	TCCCCATGCTACCATCGTTC+AGG	-	chr8_4:50154300-50154319	Msa1330890:three_prime_UTR	55.0%
!	TTTCTGGAGGGTTTCGAGGG+CGG	+	chr8_4:50154438-50154457	None:intergenic	55.0%
	GCGACGGTTCAACTCTTTGG+CGG	+	chr8_4:50154742-50154761	None:intergenic	55.0%
!	GCGTTTGGGTTTGCACAAGG+TGG	-	chr8_4:50154809-50154828	Msa1330890:CDS	55.0%
	AGCACCACAAACCACAGCAG+TGG	+	chr8_4:50154865-50154884	None:intergenic	55.0%
	ACTGGTAGTTCGGAGTCTGC+GGG	-	chr8_4:50154918-50154937	Msa1330890:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	50154090	50155405	50154090	ID=Msa1330890;Name=Msa1330890
chr8_4	mRNA	50154090	50155405	50154090	ID=Msa1330890-mRNA-1;Parent=Msa1330890;Name=Msa1330890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=157\|1\|1\|1\|1\|1\|3\|410\|178
chr8_4	exon	50154090	50154905	50154090	ID=Msa1330890-mRNA-1:exon:14621;Parent=Msa1330890-mRNA-1
chr8_4	exon	50155030	50155085	50155030	ID=Msa1330890-mRNA-1:exon:14620;Parent=Msa1330890-mRNA-1
chr8_4	exon	50155174	50155405	50155174	ID=Msa1330890-mRNA-1:exon:14619;Parent=Msa1330890-mRNA-1
chr8_4	five_prime_UTR	50155249	50155405	50155249	ID=Msa1330890-mRNA-1:five_prime_utr;Parent=Msa1330890-mRNA-1
chr8_4	CDS	50155174	50155248	50155174	ID=Msa1330890-mRNA-1:cds;Parent=Msa1330890-mRNA-1
chr8_4	CDS	50155030	50155085	50155030	ID=Msa1330890-mRNA-1:cds;Parent=Msa1330890-mRNA-1
chr8_4	CDS	50154500	50154905	50154500	ID=Msa1330890-mRNA-1:cds;Parent=Msa1330890-mRNA-1
chr8_4	three_prime_UTR	50154090	50154499	50154090	ID=Msa1330890-mRNA-1:three_prime_utr;Parent=Msa1330890-mRNA-1

Gene Sequence

>Msa1330890

ATGCAATCCACTCGTACCTTCATCGTCTTCACCATCTTCCTCATTGCGATCCTTCCCCATGCTACCATCGTTCAGGGACACTCATTCTCACCATTTTCATCCGCCCTCGAAACCCTCCAGAAACAACTAGGGTACACTTTCAAGAGCATAAGTCTTCTTCGTCGTGCAATGACCCACGCTTCTTTCTCCGAAGAGAACAACAAAGCTTTCAGCATTTTAGGCGCTACAATCATTGAAACATCAGTTTCTTTCAATTTGCTTTCGAAAGACGTTGATATTTCCGCCAAAGAGTTGAACCGTCGCTTGTCCCTAATCTCCAATGTCGACTCATCTTGTGCCGTTGATGCAATGCGTTTGGGTTTGCACAAGGTGGTTCGTGTCTCGCCCAAGACCAATTCTTCTTCCACTGCTGTGGTTTGTGGTGCTTTTCGATCAATTTTTGGTGCTATTTCTCTTGATACTGGTAGTTCGGAGTCTGCGGGTAATGTTTTCTTGACTGTTCATGGTCGTGATCTTGGGGTTTACGCTGCTATGTGA

Protein sequence

>Msa1330890

MQSTRTFIVFTIFLIAILPHATIVQGHSFSPFSSALETLQKQLGYTFKSISLLRRAMTHASFSEENNKAFSILGATIIETSVSFNLLSKDVDISAKELNRRLSLISNVDSSCAVDAMRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFGAISLDTGSSESAGNVFLTVHGRDLGVYAAM*