Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173720 | XP_024631881.1 | 91.613 | 155 | 13 | 0 | 28 | 182 | 19 | 173 | 9.30e-98 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173720 | sp|Q9M8N2|RTL1_ARATH | 44.211 | 95 | 43 | 1 | 91 | 185 | 111 | 195 | 1.01e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0259710 | Msa1173720 | 0.881603 | 2.092870e-70 | -8.615850e-47 |
| Msa0305510 | Msa1173720 | 0.899377 | 2.104617e-77 | -8.615850e-47 |
| Msa0331910 | Msa1173720 | 0.869357 | 3.290412e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173720 | MtrunA17_Chr2g0333701 | 91.613 | 155 | 13 | 0 | 28 | 182 | 19 | 173 | 8.55e-102 | 296 |
| Msa1173720 | MtrunA17_Chr4g0065391 | 48.958 | 96 | 36 | 2 | 95 | 190 | 1542 | 1624 | 4.42e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173720 | AT1G80650.1 | 44.211 | 95 | 43 | 1 | 91 | 185 | 111 | 195 | 1.02e-16 | 77.8 |
| Msa1173720 | AT4G00420.3 | 44.086 | 93 | 41 | 3 | 91 | 183 | 59 | 140 | 3.94e-13 | 67.0 |
| Msa1173720 | AT4G00420.1 | 44.086 | 93 | 41 | 3 | 91 | 183 | 80 | 161 | 5.82e-13 | 67.0 |
| Msa1173720 | AT4G00420.5 | 44.086 | 93 | 41 | 3 | 91 | 183 | 81 | 162 | 5.93e-13 | 67.0 |
| Msa1173720 | AT4G00420.2 | 44.086 | 93 | 41 | 3 | 91 | 183 | 81 | 162 | 5.93e-13 | 67.0 |
| Msa1173720 | AT4G00420.4 | 44.086 | 93 | 41 | 3 | 91 | 183 | 81 | 162 | 5.93e-13 | 67.0 |
| Msa1173720 | AT5G20320.1 | 43.011 | 93 | 42 | 1 | 89 | 181 | 1616 | 1697 | 8.95e-12 | 67.0 |
| Msa1173720 | AT5G20320.3 | 43.011 | 93 | 42 | 1 | 89 | 181 | 1391 | 1472 | 9.25e-12 | 66.6 |
| Msa1173720 | AT5G20320.2 | 43.011 | 93 | 42 | 1 | 89 | 181 | 1602 | 1683 | 9.27e-12 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTCGTATTGTGCTTAT+TGG | 0.272521 | 8_1:-4249219 | Msa1173720:CDS |
| CCCTAAAATGACACTCTCTT+TGG | 0.292490 | 8_1:+4251177 | None:intergenic |
| CTTGAATAATCAAATGAAAA+TGG | 0.300650 | 8_1:-4251275 | Msa1173720:CDS |
| ATTCAAGGTTATTGTTGAAA+TGG | 0.336999 | 8_1:-4249967 | Msa1173720:CDS |
| GTAACCTCATTGGGAAGGTT+TGG | 0.344366 | 8_1:-4248919 | Msa1173720:CDS |
| TCTCTACTTGTTGTATCTTC+AGG | 0.376832 | 8_1:+4249358 | Msa1173730:CDS |
| TTCATTTGATTATTCAAGTT+GGG | 0.380029 | 8_1:+4251280 | None:intergenic |
| TTCTTCTCACTCCACCTTCA+AGG | 0.388623 | 8_1:-4251450 | Msa1173720:intron |
| GTCATCTTCCTTCGCTGTGC+GGG | 0.407572 | 8_1:-4249328 | Msa1173720:CDS |
| ATACAAAGACCATGCTTCTT+CGG | 0.412757 | 8_1:+4249025 | Msa1173730:CDS |
| AGAGCTTCTGTAACCTCATT+GGG | 0.434018 | 8_1:-4248928 | Msa1173720:CDS |
| GAGAGCTTCTGTAACCTCAT+TGG | 0.438525 | 8_1:-4248929 | Msa1173720:CDS |
| CCAAGCATGAGCACCGTGTC+TGG | 0.442539 | 8_1:-4249177 | Msa1173720:CDS |
| TGTTTGTTAGGTATGAAGAA+AGG | 0.445413 | 8_1:-4251029 | Msa1173720:intron |
| TTGTGGTACTTAAAGCATAT+AGG | 0.446945 | 8_1:-4249825 | Msa1173720:intron |
| GTTTGTTAGGTATGAAGAAA+GGG | 0.447288 | 8_1:-4251028 | Msa1173720:intron |
| TTTCATTTGATTATTCAAGT+TGG | 0.449161 | 8_1:+4251279 | None:intergenic |
| TGGAAGATGAAACTGAAGAT+TGG | 0.449737 | 8_1:+4251197 | None:intergenic |
| GGAGTAGGAAGATGATAAAG+TGG | 0.460554 | 8_1:-4248954 | Msa1173720:CDS |
| CCAGACACGGTGCTCATGCT+TGG | 0.470917 | 8_1:+4249177 | Msa1173730:CDS |
| GCAGGAGAAGGAGAGTTCCT+TGG | 0.474726 | 8_1:-4249255 | Msa1173720:intron |
| GTTATTGTTGAAATGGAGAC+AGG | 0.475716 | 8_1:-4249960 | Msa1173720:CDS |
| GGCATGGTTTCTATGTCACT+TGG | 0.494818 | 8_1:-4248976 | Msa1173720:CDS |
| ATGAACCTCAACACGACCAC+CGG | 0.503765 | 8_1:-4249058 | Msa1173720:CDS |
| AGACATGTGCTGTAAATCAT+TGG | 0.504933 | 8_1:-4250983 | Msa1173720:CDS |
| GATGCGCAACACAGCATCTC+GGG | 0.506782 | 8_1:-4249119 | Msa1173720:CDS |
| AGCACAATACGAAAGCTTCA+AGG | 0.507043 | 8_1:+4249225 | Msa1173730:CDS |
| TTTCTATGTCACTTGGGAGT+AGG | 0.509889 | 8_1:-4248969 | Msa1173720:CDS |
| CAACACAGCATCTCGGGTTG+CGG | 0.523737 | 8_1:-4249113 | Msa1173720:CDS |
| CCATCCCGGTGGTCGTGTTG+AGG | 0.534868 | 8_1:+4249053 | Msa1173730:CDS |
| CGTTTGTATTTCAGCAACCA+TGG | 0.536086 | 8_1:+4249142 | Msa1173730:CDS |
| GAGTAGGAAGATGATAAAGT+GGG | 0.541740 | 8_1:-4248953 | Msa1173720:CDS |
| AAACCATGCCATCTTCAAGC+TGG | 0.543658 | 8_1:+4248989 | None:intergenic |
| GTACAAATCCAGCTTGAAGA+TGG | 0.545136 | 8_1:-4248997 | Msa1173720:CDS |
| GGCAGCAGACAATGCAGCCG+AGG | 0.547846 | 8_1:-4249853 | Msa1173720:CDS |
| AGCTTCAAGGTCTTTCTCCA+AGG | 0.548141 | 8_1:+4249238 | Msa1173730:CDS |
| TAAGTACCACAATGCACCCT+CGG | 0.553491 | 8_1:+4249836 | None:intergenic |
| AAGACAACAACTTCAGATGA+AGG | 0.557587 | 8_1:-4251154 | Msa1173720:intron |
| TTAGGTATGAAGAAAGGGTG+TGG | 0.557962 | 8_1:-4251023 | Msa1173720:intron |
| TGTGTTTGAGTGTTGTAAAG+AGG | 0.558213 | 8_1:-4250952 | Msa1173720:CDS |
| GCAGCAGACAATGCAGCCGA+GGG | 0.565055 | 8_1:-4249852 | Msa1173720:CDS |
| CTTCTTCGGATTGTCCATCC+CGG | 0.566311 | 8_1:+4249039 | Msa1173730:CDS |
| GCATGGTTTCTATGTCACTT+GGG | 0.566543 | 8_1:-4248975 | Msa1173720:CDS |
| ATGATCTCAGCTGCAGTCAC+AGG | 0.566923 | 8_1:-4249087 | Msa1173720:CDS |
| TCTTTACAACACTCAAACAC+AGG | 0.578805 | 8_1:+4250954 | None:intergenic |
| CTTCTGTAACCTCATTGGGA+AGG | 0.579543 | 8_1:-4248924 | Msa1173720:CDS |
| CCTCAACACGACCACCGGGA+TGG | 0.580543 | 8_1:-4249053 | Msa1173720:CDS |
| GGATGCGCAACACAGCATCT+CGG | 0.580572 | 8_1:-4249120 | Msa1173720:CDS |
| CACACAATCCCGCACAGCGA+AGG | 0.581547 | 8_1:+4249320 | Msa1173730:CDS |
| TGTCATCTTCCTTCGCTGTG+CGG | 0.586769 | 8_1:-4249329 | Msa1173720:CDS |
| CTCTCCAAACCTTCCCAATG+AGG | 0.592938 | 8_1:+4248915 | None:intergenic |
| AATCCAGCTTGAAGATGGCA+TGG | 0.595774 | 8_1:-4248992 | Msa1173720:CDS |
| GTTTGTATTTCAGCAACCAT+GGG | 0.600791 | 8_1:+4249143 | Msa1173730:CDS |
| TGAACCTCAACACGACCACC+GGG | 0.601755 | 8_1:-4249057 | Msa1173720:CDS |
| CATGGTTGCTGAAATACAAA+CGG | 0.602757 | 8_1:-4249141 | Msa1173720:CDS |
| ATGGACAATCCGAAGAAGCA+TGG | 0.615251 | 8_1:-4249034 | Msa1173720:intron |
| ATCATACACAATACAAAACA+TGG | 0.634806 | 8_1:-4251486 | Msa1173720:CDS |
| TCTGGTTCAACAACTGCCCA+TGG | 0.636749 | 8_1:-4249159 | Msa1173720:CDS |
| TTTGAGTGTTGTAAAGAGGA+AGG | 0.648639 | 8_1:-4250948 | Msa1173720:CDS |
| GGCAGTTGTTGAACCAGACA+CGG | 0.650306 | 8_1:+4249164 | Msa1173730:CDS |
| TTACAACACTCAAACACAGG+AGG | 0.658087 | 8_1:+4250957 | None:intergenic |
| ACTTACATTATGCAATGACA+TGG | 0.673466 | 8_1:+4250924 | None:intergenic |
| ATGCAGCCGAGGGTGCATTG+TGG | 0.682343 | 8_1:-4249842 | Msa1173720:CDS |
| CTTCGGATTGTCCATCCCGG+TGG | 0.692959 | 8_1:+4249042 | Msa1173730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTAAAATAAATAAT+TGG | - | chr8_1:4249010-4249029 | Msa1173720:intron | 0.0% |
| !! | TTTAATTAAAATAAATAATT+GGG | - | chr8_1:4249011-4249030 | Msa1173720:intron | 0.0% |
| !!! | TTTTTATTTATGAAAAATGA+AGG | - | chr8_1:4249514-4249533 | Msa1173720:intron | 10.0% |
| !!! | TTTTATTTATGAAAAATGAA+GGG | - | chr8_1:4249515-4249534 | Msa1173720:intron | 10.0% |
| !! | AAAAAAAATTATTACCTTGA+AGG | + | chr8_1:4248981-4249000 | None:intergenic | 15.0% |
| !!! | ACAAAAAAAATGAACTTTTT+TGG | + | chr8_1:4249315-4249334 | Msa1173730:CDS | 15.0% |
| !! | AGTACAAATTATTGTATTAT+TGG | - | chr8_1:4250638-4250657 | Msa1173720:intron | 15.0% |
| !!! | TTCATTTGATTATTCAAGTT+GGG | + | chr8_1:4249137-4249156 | Msa1173730:CDS | 20.0% |
| !! | TTTCATTTGATTATTCAAGT+TGG | + | chr8_1:4249138-4249157 | Msa1173730:CDS | 20.0% |
| !! | CTTGAATAATCAAATGAAAA+TGG | - | chr8_1:4249139-4249158 | Msa1173720:CDS | 20.0% |
| !!! | AATGAGAAAAATGAGTATTT+TGG | - | chr8_1:4249356-4249375 | Msa1173720:CDS | 20.0% |
| !!! | TTTTGGTATTATTGTTTGTT+AGG | - | chr8_1:4249373-4249392 | Msa1173720:CDS | 20.0% |
| !!! | GAAATGAAATTTTCTATAAG+TGG | - | chr8_1:4249563-4249582 | Msa1173720:intron | 20.0% |
| !! | ATATAAACAACTTACAACTT+AGG | - | chr8_1:4249804-4249823 | Msa1173720:intron | 20.0% |
| !! | TCATTATGAATTGTAGAAAA+GGG | + | chr8_1:4250357-4250376 | None:intergenic | 20.0% |
| !! | TTCATTATGAATTGTAGAAA+AGG | + | chr8_1:4250358-4250377 | None:intergenic | 20.0% |
| ! | ATCATACACAATACAAAACA+TGG | - | chr8_1:4248928-4248947 | Msa1173720:CDS | 25.0% |
| ! | AAAAATTATTACCTTGAAGG+TGG | + | chr8_1:4248978-4248997 | None:intergenic | 25.0% |
| ! | AAAAGTTTATGCTGCAAAAA+TGG | - | chr8_1:4249106-4249125 | Msa1173720:CDS | 25.0% |
| ! | GGAAAACATGCAATAATTAA+TGG | + | chr8_1:4249294-4249313 | Msa1173730:CDS | 25.0% |
| ! | AATGAAGGGAAAAAAAACTA+TGG | - | chr8_1:4249529-4249548 | Msa1173720:intron | 25.0% |
| !! | ATTTTCAACCAAGTGATTAT+AGG | - | chr8_1:4249727-4249746 | Msa1173720:intron | 25.0% |
| !! | TTTTCAACCAAGTGATTATA+GGG | - | chr8_1:4249728-4249747 | Msa1173720:intron | 25.0% |
| ! | TCTCAAATTATTAACAGTGT+CGG | - | chr8_1:4249993-4250012 | Msa1173720:intron | 25.0% |
| ! | AATATTGCAAAAGATTTAGC+TGG | + | chr8_1:4250230-4250249 | None:intergenic | 25.0% |
| ! | TCATGCAATAAGACAAATAT+TGG | + | chr8_1:4250313-4250332 | None:intergenic | 25.0% |
| ! | AAAGGGAAGCAAAATATAAT+AGG | + | chr8_1:4250340-4250359 | None:intergenic | 25.0% |
| ! | ACAATTCATAATGAAACTTG+AGG | - | chr8_1:4250363-4250382 | Msa1173720:intron | 25.0% |
| ! | ATTCAAGGTTATTGTTGAAA+TGG | - | chr8_1:4250447-4250466 | Msa1173720:intron | 25.0% |
| !! | ATAAACCTCTACAATGTTTT+TGG | + | chr8_1:4250515-4250534 | None:intergenic | 25.0% |
| ! | AAAAACATTGTAGAGGTTTA+TGG | - | chr8_1:4250514-4250533 | Msa1173720:intron | 25.0% |
| ! | TCCTCATCAAAAAAAGAAAA+TGG | - | chr8_1:4250540-4250559 | Msa1173720:intron | 25.0% |
| ! | GTAGATGTTAATGAAACAAA+TGG | + | chr8_1:4250940-4250959 | None:intergenic | 25.0% |
| ! | TTGCAGCATAAACTTTTGTT+CGG | + | chr8_1:4249103-4249122 | Msa1173730:CDS | 30.0% |
| ! | TGTTTGTTAGGTATGAAGAA+AGG | - | chr8_1:4249385-4249404 | Msa1173720:CDS | 30.0% |
| ! | GTTTGTTAGGTATGAAGAAA+GGG | - | chr8_1:4249386-4249405 | Msa1173720:CDS | 30.0% |
| ACTTACATTATGCAATGACA+TGG | + | chr8_1:4249493-4249512 | Msa1173730:CDS | 30.0% | |
| ! | AAGTGGTATATTTTGTGTGT+TGG | - | chr8_1:4249580-4249599 | Msa1173720:intron | 30.0% |
| TTAGAAGATGCATAGATTAG+TGG | - | chr8_1:4249838-4249857 | Msa1173720:CDS | 30.0% | |
| AAGATTATTCCATTGCATGT+TGG | - | chr8_1:4250201-4250220 | Msa1173720:intron | 30.0% | |
| ! | GACAAATATTGGTTGATATC+TGG | + | chr8_1:4250302-4250321 | None:intergenic | 30.0% |
| AACCTGTGAAAAACATCAAT+TGG | + | chr8_1:4250424-4250443 | None:intergenic | 30.0% | |
| ! | TTTTCACAGGTTTACATTCA+AGG | - | chr8_1:4250432-4250451 | Msa1173720:intron | 30.0% |
| AGTAACCAAAAACATTGTAG+AGG | - | chr8_1:4250507-4250526 | Msa1173720:intron | 30.0% | |
| !!! | GCCATTTTCTTTTTTTGATG+AGG | + | chr8_1:4250544-4250563 | None:intergenic | 30.0% |
| TTGTGGTACTTAAAGCATAT+AGG | - | chr8_1:4250589-4250608 | Msa1173720:intron | 30.0% | |
| ! | CACAAAGTTATTTCATTCCT+CGG | - | chr8_1:4250690-4250709 | Msa1173720:intron | 30.0% |
| !!! | TTTTTTGTGCGCCTATTTAA+CGG | + | chr8_1:4250898-4250917 | None:intergenic | 30.0% |
| GATGTTAATGAAACAAATGG+CGG | + | chr8_1:4250937-4250956 | None:intergenic | 30.0% | |
| CAAGAAATCAGAAACAAGAT+CGG | + | chr8_1:4250980-4250999 | None:intergenic | 30.0% | |
| !!! | GCATCAATGTTTTTCAAGAC+TGG | + | chr8_1:4249194-4249213 | Msa1173730:CDS | 35.0% |
| TGGAAGATGAAACTGAAGAT+TGG | + | chr8_1:4249220-4249239 | Msa1173730:CDS | 35.0% | |
| !!! | TCCAAAGAGAGTGTCATTTT+AGG | - | chr8_1:4249236-4249255 | Msa1173720:CDS | 35.0% |
| !!! | CCAAAGAGAGTGTCATTTTA+GGG | - | chr8_1:4249237-4249256 | Msa1173720:CDS | 35.0% |
| AAGACAACAACTTCAGATGA+AGG | - | chr8_1:4249260-4249279 | Msa1173720:intron | 35.0% | |
| AGACATGTGCTGTAAATCAT+TGG | - | chr8_1:4249431-4249450 | Msa1173720:intron | 35.0% | |
| TCTTTACAACACTCAAACAC+AGG | + | chr8_1:4249463-4249482 | Msa1173730:CDS | 35.0% | |
| ! | TGTGTTTGAGTGTTGTAAAG+AGG | - | chr8_1:4249462-4249481 | Msa1173720:intron | 35.0% |
| ! | TTTGAGTGTTGTAAAGAGGA+AGG | - | chr8_1:4249466-4249485 | Msa1173720:intron | 35.0% |
| TTATCGAACTTAAGTCACCA+AGG | - | chr8_1:4249693-4249712 | Msa1173720:intron | 35.0% | |
| ! | GAAAATTTGCTCTTCAACCT+TGG | + | chr8_1:4249713-4249732 | Msa1173730:CDS | 35.0% |
| TCAGCTGTAGATTTCAAATC+AGG | - | chr8_1:4249774-4249793 | Msa1173720:intron | 35.0% | |
| ! | GACCAATTGATGTTTTTCAC+AGG | - | chr8_1:4250419-4250438 | Msa1173720:intron | 35.0% |
| GTTATTGTTGAAATGGAGAC+AGG | - | chr8_1:4250454-4250473 | Msa1173720:intron | 35.0% | |
| AAATAACTTTGTGGCAGTAG+AGG | + | chr8_1:4250683-4250702 | None:intergenic | 35.0% | |
| CGAGGAATGAAATAACTTTG+TGG | + | chr8_1:4250692-4250711 | None:intergenic | 35.0% | |
| TGTTTCCTTTGTTGCATTAC+TGG | - | chr8_1:4250852-4250871 | Msa1173720:intron | 35.0% | |
| AAATGCCAGTAATGCAACAA+AGG | + | chr8_1:4250860-4250879 | None:intergenic | 35.0% | |
| !! | TCTCTACTTGTTGTATCTTC+AGG | + | chr8_1:4251059-4251078 | None:intergenic | 35.0% |
| AGCTTTCGTATTGTGCTTAT+TGG | - | chr8_1:4251195-4251214 | Msa1173720:CDS | 35.0% | |
| GTTTGTATTTCAGCAACCAT+GGG | + | chr8_1:4251274-4251293 | None:intergenic | 35.0% | |
| CATGGTTGCTGAAATACAAA+CGG | - | chr8_1:4251273-4251292 | Msa1173720:CDS | 35.0% | |
| ATACAAAGACCATGCTTCTT+CGG | + | chr8_1:4251392-4251411 | None:intergenic | 35.0% | |
| GAGTAGGAAGATGATAAAGT+GGG | - | chr8_1:4251461-4251480 | Msa1173720:CDS | 35.0% | |
| CCCTAAAATGACACTCTCTT+TGG | + | chr8_1:4249240-4249259 | Msa1173730:CDS | 40.0% | |
| TTAGGTATGAAGAAAGGGTG+TGG | - | chr8_1:4249391-4249410 | Msa1173720:intron | 40.0% | |
| TTACAACACTCAAACACAGG+AGG | + | chr8_1:4249460-4249479 | Msa1173730:CDS | 40.0% | |
| CCAGTTTCCCTATAATCACT+TGG | + | chr8_1:4249738-4249757 | None:intergenic | 40.0% | |
| CCAAGTGATTATAGGGAAAC+TGG | - | chr8_1:4249735-4249754 | Msa1173720:intron | 40.0% | |
| TATGTGCTTGAGTGCTTCAT+AGG | + | chr8_1:4249879-4249898 | None:intergenic | 40.0% | |
| TATATGTGTCAGTGTCGTGT+CGG | + | chr8_1:4249951-4249970 | None:intergenic | 40.0% | |
| ! | GACGTTTTATGCAGGTATCT+GGG | + | chr8_1:4250120-4250139 | None:intergenic | 40.0% |
| GATGTTAGAGCCTAGTGTTT+CGG | + | chr8_1:4250149-4250168 | None:intergenic | 40.0% | |
| TTGGATATCATCAACAGCCA+AGG | - | chr8_1:4250657-4250676 | Msa1173720:intron | 40.0% | |
| AAGTCTAGATAGCATTACCG+AGG | + | chr8_1:4250710-4250729 | None:intergenic | 40.0% | |
| TCGGTAATGCTATCTAGACT+TGG | - | chr8_1:4250709-4250728 | Msa1173720:intron | 40.0% | |
| GAGCATGGTCTTCTGATTAT+TGG | + | chr8_1:4250738-4250757 | None:intergenic | 40.0% | |
| ACAGATTTGGCAGGAAAAAG+AGG | + | chr8_1:4250772-4250791 | None:intergenic | 40.0% | |
| GTGATAGCAATACAGCAAAC+AGG | + | chr8_1:4250804-4250823 | None:intergenic | 40.0% | |
| TTGCTGTATTGCTATCACGA+AGG | - | chr8_1:4250806-4250825 | Msa1173720:intron | 40.0% | |
| AGCACAATACGAAAGCTTCA+AGG | + | chr8_1:4251192-4251211 | None:intergenic | 40.0% | |
| CGTTTGTATTTCAGCAACCA+TGG | + | chr8_1:4251275-4251294 | None:intergenic | 40.0% | |
| GTACAAATCCAGCTTGAAGA+TGG | - | chr8_1:4251417-4251436 | Msa1173720:intron | 40.0% | |
| ! | GCATGGTTTCTATGTCACTT+GGG | - | chr8_1:4251439-4251458 | Msa1173720:intron | 40.0% |
| ! | TTTCTATGTCACTTGGGAGT+AGG | - | chr8_1:4251445-4251464 | Msa1173720:intron | 40.0% |
| GGAGTAGGAAGATGATAAAG+TGG | - | chr8_1:4251460-4251479 | Msa1173720:CDS | 40.0% | |
| AGAGCTTCTGTAACCTCATT+GGG | - | chr8_1:4251486-4251505 | Msa1173720:CDS | 40.0% | |
| TTCTTCTCACTCCACCTTCA+AGG | - | chr8_1:4248964-4248983 | Msa1173720:CDS | 45.0% | |
| TGAGTGCTTCATAGGTGTGT+GGG | + | chr8_1:4249871-4249890 | None:intergenic | 45.0% | |
| TTGAGTGCTTCATAGGTGTG+TGG | + | chr8_1:4249872-4249891 | None:intergenic | 45.0% | |
| ACTCAAGCACATACACTCCT+CGG | - | chr8_1:4249886-4249905 | Msa1173720:CDS | 45.0% | |
| ATGAAGCACGGATATGGACA+CGG | + | chr8_1:4250048-4250067 | None:intergenic | 45.0% | |
| TTCATAGCCACACACAGACA+CGG | - | chr8_1:4250063-4250082 | Msa1173720:intron | 45.0% | |
| ! | GGACGTTTTATGCAGGTATC+TGG | + | chr8_1:4250121-4250140 | None:intergenic | 45.0% |
| AGCTGGATACCAACATGCAA+TGG | + | chr8_1:4250213-4250232 | None:intergenic | 45.0% | |
| TAAGTACCACAATGCACCCT+CGG | + | chr8_1:4250581-4250600 | None:intergenic | 45.0% | |
| TCAGAAGACCATGCTCTCTT+AGG | - | chr8_1:4250742-4250761 | Msa1173720:intron | 45.0% | |
| AAGAGGAAGACAGATTTGGC+AGG | + | chr8_1:4250781-4250800 | None:intergenic | 45.0% | |
| CAGGAAGAGGAAGACAGATT+TGG | + | chr8_1:4250785-4250804 | None:intergenic | 45.0% | |
| GCAATACAGCAAACAGGAAG+AGG | + | chr8_1:4250798-4250817 | None:intergenic | 45.0% | |
| TAGTCACGCCTCCGTTAAAT+AGG | - | chr8_1:4250884-4250903 | Msa1173720:intron | 45.0% | |
| TTTGTGCGCCTATTTAACGG+AGG | + | chr8_1:4250895-4250914 | None:intergenic | 45.0% | |
| CCTGCTCGTGAAATGACAAT+CGG | + | chr8_1:4251144-4251163 | None:intergenic | 45.0% | |
| AGCTTCAAGGTCTTTCTCCA+AGG | + | chr8_1:4251179-4251198 | None:intergenic | 45.0% | |
| ATGGACAATCCGAAGAAGCA+TGG | - | chr8_1:4251380-4251399 | Msa1173720:intron | 45.0% | |
| AATCCAGCTTGAAGATGGCA+TGG | - | chr8_1:4251422-4251441 | Msa1173720:intron | 45.0% | |
| AAACCATGCCATCTTCAAGC+TGG | + | chr8_1:4251428-4251447 | None:intergenic | 45.0% | |
| GGCATGGTTTCTATGTCACT+TGG | - | chr8_1:4251438-4251457 | Msa1173720:intron | 45.0% | |
| GAGAGCTTCTGTAACCTCAT+TGG | - | chr8_1:4251485-4251504 | Msa1173720:CDS | 45.0% | |
| CTTCTGTAACCTCATTGGGA+AGG | - | chr8_1:4251490-4251509 | Msa1173720:CDS | 45.0% | |
| GTAACCTCATTGGGAAGGTT+TGG | - | chr8_1:4251495-4251514 | Msa1173720:CDS | 45.0% | |
| !!! | ATTGTTTTTTTTTTTAAAAT+TGG | - | chr8_1:4249044-4249063 | Msa1173720:CDS | 5.0% |
| TTCATAGGTGTGTGGGCACT+AGG | + | chr8_1:4249864-4249883 | None:intergenic | 50.0% | |
| GCACATACACTCCTCGGATT+AGG | - | chr8_1:4249892-4249911 | Msa1173720:CDS | 50.0% | |
| ACGGATATGGACACGGAAAC+CGG | + | chr8_1:4250041-4250060 | None:intergenic | 50.0% | |
| GTGGCTATGAAGCACGGATA+TGG | + | chr8_1:4250054-4250073 | None:intergenic | 50.0% | |
| CTGTGTGTGGCTATGAAGCA+CGG | + | chr8_1:4250060-4250079 | None:intergenic | 50.0% | |
| ! | GGAGTGTGGACGTTTTATGC+AGG | + | chr8_1:4250128-4250147 | None:intergenic | 50.0% |
| TGTCATCTTCCTTCGCTGTG+CGG | - | chr8_1:4251085-4251104 | Msa1173720:intron | 50.0% | |
| ! | CCGATTGTCATTTCACGAGC+AGG | - | chr8_1:4251141-4251160 | Msa1173720:intron | 50.0% |
| GTCATTTCACGAGCAGGAGA+AGG | - | chr8_1:4251147-4251166 | Msa1173720:intron | 50.0% | |
| GGCAGTTGTTGAACCAGACA+CGG | + | chr8_1:4251253-4251272 | None:intergenic | 50.0% | |
| ! | TCTGGTTCAACAACTGCCCA+TGG | - | chr8_1:4251255-4251274 | Msa1173720:CDS | 50.0% |
| ATGATCTCAGCTGCAGTCAC+AGG | - | chr8_1:4251327-4251346 | Msa1173720:intron | 50.0% | |
| ATGAACCTCAACACGACCAC+CGG | - | chr8_1:4251356-4251375 | Msa1173720:intron | 50.0% | |
| CTTCTTCGGATTGTCCATCC+CGG | + | chr8_1:4251378-4251397 | None:intergenic | 50.0% | |
| CTCTCCAAACCTTCCCAATG+AGG | + | chr8_1:4251502-4251521 | None:intergenic | 50.0% | |
| ! | TGTCAGTGTCGTGTCGGTGT+TGG | + | chr8_1:4249945-4249964 | None:intergenic | 55.0% |
| GTCAGTATGCGTGTCGTGTC+CGG | - | chr8_1:4250019-4250038 | Msa1173720:intron | 55.0% | |
| AGGTATCTGGGCTTGATCCC+AGG | + | chr8_1:4250108-4250127 | None:intergenic | 55.0% | |
| CGTCCACACTCCGAAACACT+AGG | - | chr8_1:4250136-4250155 | Msa1173720:intron | 55.0% | |
| GAGCCTAGTGTTTCGGAGTG+TGG | + | chr8_1:4250142-4250161 | None:intergenic | 55.0% | |
| CTTTGTGGCAGTAGAGGCCT+TGG | + | chr8_1:4250677-4250696 | None:intergenic | 55.0% | |
| GAGGCTCTCCTAAGAGAGCA+TGG | + | chr8_1:4250753-4250772 | None:intergenic | 55.0% | |
| GTCATCTTCCTTCGCTGTGC+GGG | - | chr8_1:4251086-4251105 | Msa1173720:intron | 55.0% | |
| GCAGGAGAAGGAGAGTTCCT+TGG | - | chr8_1:4251159-4251178 | Msa1173720:CDS | 55.0% | |
| GGATGCGCAACACAGCATCT+CGG | - | chr8_1:4251294-4251313 | Msa1173720:CDS | 55.0% | |
| GATGCGCAACACAGCATCTC+GGG | - | chr8_1:4251295-4251314 | Msa1173720:CDS | 55.0% | |
| ! | CAACACAGCATCTCGGGTTG+CGG | - | chr8_1:4251301-4251320 | Msa1173720:CDS | 55.0% |
| TGAACCTCAACACGACCACC+GGG | - | chr8_1:4251357-4251376 | Msa1173720:intron | 55.0% | |
| ! | ACTCCTCGGATTAGGCGTCC+CGG | - | chr8_1:4249900-4249919 | Msa1173720:CDS | 60.0% |
| ACACGACACCTGTCCGACAC+CGG | + | chr8_1:4249922-4249941 | None:intergenic | 60.0% | |
| AGCCACACACAGACACGGAG+AGG | - | chr8_1:4250068-4250087 | Msa1173720:intron | 60.0% | |
| GCCACACACAGACACGGAGA+GGG | - | chr8_1:4250069-4250088 | Msa1173720:intron | 60.0% | |
| CCACACACAGACACGGAGAG+GGG | - | chr8_1:4250070-4250089 | Msa1173720:intron | 60.0% | |
| CACACACAGACACGGAGAGG+GGG | - | chr8_1:4250071-4250090 | Msa1173720:intron | 60.0% | |
| ACAGACACGGAGAGGGGGAA+GGG | - | chr8_1:4250076-4250095 | Msa1173720:intron | 60.0% | |
| AGGGGGAAGGGTGGAAACCT+GGG | - | chr8_1:4250088-4250107 | Msa1173720:intron | 60.0% | |
| GCAGCAGACAATGCAGCCGA+GGG | - | chr8_1:4250562-4250581 | Msa1173720:intron | 60.0% | |
| ! | ATGCAGCCGAGGGTGCATTG+TGG | - | chr8_1:4250572-4250591 | Msa1173720:intron | 60.0% |
| CACACAATCCCGCACAGCGA+AGG | + | chr8_1:4251097-4251116 | None:intergenic | 60.0% | |
| CCAGACACGGTGCTCATGCT+TGG | + | chr8_1:4251240-4251259 | None:intergenic | 60.0% | |
| ! | CCAAGCATGAGCACCGTGTC+TGG | - | chr8_1:4251237-4251256 | Msa1173720:CDS | 60.0% |
| CTTCGGATTGTCCATCCCGG+TGG | + | chr8_1:4251375-4251394 | None:intergenic | 60.0% | |
| ACACCGGGACGCCTAATCCG+AGG | + | chr8_1:4249906-4249925 | None:intergenic | 65.0% | |
| ! | CGGATTAGGCGTCCCGGTGT+CGG | - | chr8_1:4249906-4249925 | Msa1173720:CDS | 65.0% |
| CACGACACCTGTCCGACACC+GGG | + | chr8_1:4249921-4249940 | None:intergenic | 65.0% | |
| CCCCTCTCCGTGTCTGTGTG+TGG | + | chr8_1:4250073-4250092 | None:intergenic | 65.0% | |
| CACAGACACGGAGAGGGGGA+AGG | - | chr8_1:4250075-4250094 | Msa1173720:intron | 65.0% | |
| GAGGGGGAAGGGTGGAAACC+TGG | - | chr8_1:4250087-4250106 | Msa1173720:intron | 65.0% | |
| GGCAGCAGACAATGCAGCCG+AGG | - | chr8_1:4250561-4250580 | Msa1173720:intron | 65.0% | |
| CCATCCCGGTGGTCGTGTTG+AGG | + | chr8_1:4251364-4251383 | None:intergenic | 65.0% | |
| CCTCAACACGACCACCGGGA+TGG | - | chr8_1:4251361-4251380 | Msa1173720:intron | 65.0% | |
| ! | TAGGCGTCCCGGTGTCGGAC+AGG | - | chr8_1:4249911-4249930 | Msa1173720:CDS | 70.0% |
| GACACGGAGAGGGGGAAGGG+TGG | - | chr8_1:4250079-4250098 | Msa1173720:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 4248909 | 4251527 | 4248909 | ID=Msa1173720;Name=Msa1173720 |
| chr8_1 | mRNA | 4248909 | 4251527 | 4248909 | ID=Msa1173720-mRNA-1;Parent=Msa1173720;Name=Msa1173720-mRNA-1;_AED=0.20;_eAED=0.26;_QI=0|0.5|0.28|1|0.5|0.28|7|0|334 |
| chr8_1 | exon | 4251451 | 4251527 | 4251451 | ID=Msa1173720-mRNA-1:exon:1542;Parent=Msa1173720-mRNA-1 |
| chr8_1 | exon | 4251155 | 4251342 | 4251155 | ID=Msa1173720-mRNA-1:exon:1541;Parent=Msa1173720-mRNA-1 |
| chr8_1 | exon | 4250930 | 4251041 | 4250930 | ID=Msa1173720-mRNA-1:exon:1540;Parent=Msa1173720-mRNA-1 |
| chr8_1 | exon | 4249826 | 4249995 | 4249826 | ID=Msa1173720-mRNA-1:exon:1539;Parent=Msa1173720-mRNA-1 |
| chr8_1 | exon | 4249304 | 4249409 | 4249304 | ID=Msa1173720-mRNA-1:exon:1538;Parent=Msa1173720-mRNA-1 |
| chr8_1 | exon | 4249035 | 4249273 | 4249035 | ID=Msa1173720-mRNA-1:exon:1537;Parent=Msa1173720-mRNA-1 |
| chr8_1 | exon | 4248909 | 4249018 | 4248909 | ID=Msa1173720-mRNA-1:exon:1536;Parent=Msa1173720-mRNA-1 |
| chr8_1 | CDS | 4251451 | 4251527 | 4251451 | ID=Msa1173720-mRNA-1:cds;Parent=Msa1173720-mRNA-1 |
| chr8_1 | CDS | 4251155 | 4251342 | 4251155 | ID=Msa1173720-mRNA-1:cds;Parent=Msa1173720-mRNA-1 |
| chr8_1 | CDS | 4250930 | 4251041 | 4250930 | ID=Msa1173720-mRNA-1:cds;Parent=Msa1173720-mRNA-1 |
| chr8_1 | CDS | 4249826 | 4249995 | 4249826 | ID=Msa1173720-mRNA-1:cds;Parent=Msa1173720-mRNA-1 |
| chr8_1 | CDS | 4249304 | 4249409 | 4249304 | ID=Msa1173720-mRNA-1:cds;Parent=Msa1173720-mRNA-1 |
| chr8_1 | CDS | 4249035 | 4249273 | 4249035 | ID=Msa1173720-mRNA-1:cds;Parent=Msa1173720-mRNA-1 |
| chr8_1 | CDS | 4248909 | 4249018 | 4248909 | ID=Msa1173720-mRNA-1:cds;Parent=Msa1173720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
