Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259710 | XP_024631881.1 | 91.613 | 155 | 13 | 0 | 27 | 181 | 19 | 173 | 7.96e-98 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259710 | sp|Q9M8N2|RTL1_ARATH | 44.211 | 95 | 43 | 1 | 90 | 184 | 111 | 195 | 1.07e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259710 | A0A396JJW4 | 91.613 | 155 | 13 | 0 | 27 | 181 | 19 | 173 | 3.80e-98 | 297 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0259710 | 0.811746 | 6.000879e-51 | -8.615850e-47 |
| Msa0008850 | Msa0259710 | 0.810144 | 1.334210e-50 | -8.615850e-47 |
| Msa0024680 | Msa0259710 | 0.811036 | 8.558901e-51 | -8.615850e-47 |
| Msa0027540 | Msa0259710 | 0.815128 | 1.083166e-51 | -8.615850e-47 |
| Msa0075310 | Msa0259710 | 0.802350 | 5.850144e-49 | -8.615850e-47 |
| Msa0094420 | Msa0259710 | 0.823795 | 1.142708e-53 | -8.615850e-47 |
| Msa0120330 | Msa0259710 | 0.812920 | 3.325983e-51 | -8.615850e-47 |
| Msa0146470 | Msa0259710 | 0.807042 | 6.132562e-50 | -8.615850e-47 |
| Msa0200970 | Msa0259710 | 0.808134 | 3.596096e-50 | -8.615850e-47 |
| Msa0207000 | Msa0259710 | 0.803770 | 2.974452e-49 | -8.615850e-47 |
| Msa0222120 | Msa0259710 | 0.802778 | 4.774668e-49 | -8.615850e-47 |
| Msa0227500 | Msa0259710 | 0.800999 | 1.107308e-48 | -8.615850e-47 |
| Msa0248560 | Msa0259710 | 0.805719 | 1.165341e-49 | -8.615850e-47 |
| Msa0259710 | Msa0263620 | 0.801041 | 1.085771e-48 | -8.615850e-47 |
| Msa0259710 | Msa0284780 | 0.815807 | 7.652545e-52 | -8.615850e-47 |
| Msa0259710 | Msa0297920 | 0.810654 | 1.035019e-50 | -8.615850e-47 |
| Msa0259710 | Msa0298970 | 0.817283 | 3.573356e-52 | -8.615850e-47 |
| Msa0259710 | Msa0301180 | 0.807969 | 3.899294e-50 | -8.615850e-47 |
| Msa0259710 | Msa0305510 | 0.971812 | 9.352142e-134 | -8.615850e-47 |
| Msa0259710 | Msa0314790 | 0.803068 | 4.159118e-49 | -8.615850e-47 |
| Msa0259710 | Msa0320540 | 0.808567 | 2.907436e-50 | -8.615850e-47 |
| Msa0259710 | Msa0331910 | 0.952373 | 2.785497e-110 | -8.615850e-47 |
| Msa0259710 | Msa0417630 | 0.803470 | 3.433508e-49 | -8.615850e-47 |
| Msa0259710 | Msa0469910 | -0.808219 | 3.448746e-50 | -8.615850e-47 |
| Msa0259710 | Msa0519200 | 0.811531 | 6.684350e-51 | -8.615850e-47 |
| Msa0259710 | Msa0524120 | 0.803634 | 3.174639e-49 | -8.615850e-47 |
| Msa0259710 | Msa0538570 | 0.810169 | 1.317603e-50 | -8.615850e-47 |
| Msa0259710 | Msa0546380 | 0.805020 | 1.632928e-49 | -8.615850e-47 |
| Msa0259710 | Msa0576420 | 0.803027 | 4.239746e-49 | -8.615850e-47 |
| Msa0259710 | Msa0594390 | 0.802000 | 6.904525e-49 | -8.615850e-47 |
| Msa0259710 | Msa0600390 | 0.820901 | 5.369306e-53 | -8.615850e-47 |
| Msa0259710 | Msa0640880 | 0.820980 | 5.149153e-53 | -8.615850e-47 |
| Msa0259710 | Msa0642650 | 0.818273 | 2.136048e-52 | -8.615850e-47 |
| Msa0259710 | Msa0667220 | 0.815829 | 7.566196e-52 | -8.615850e-47 |
| Msa0259710 | Msa0678890 | 0.809999 | 1.433057e-50 | -8.615850e-47 |
| Msa0259710 | Msa0681890 | 0.813221 | 2.856889e-51 | -8.615850e-47 |
| Msa0259710 | Msa0799710 | 0.809050 | 2.291623e-50 | -8.615850e-47 |
| Msa0259710 | Msa0820670 | 0.802691 | 4.975847e-49 | -8.615850e-47 |
| Msa0259710 | Msa0837990 | 0.801672 | 8.061248e-49 | -8.615850e-47 |
| Msa0259710 | Msa0907700 | 0.806935 | 6.458882e-50 | -8.615850e-47 |
| Msa0259710 | Msa0922540 | 0.806741 | 7.100599e-50 | -8.615850e-47 |
| Msa0259710 | Msa0925160 | 0.803908 | 2.784755e-49 | -8.615850e-47 |
| Msa0259710 | Msa0931480 | 0.807789 | 4.258096e-50 | -8.615850e-47 |
| Msa0259710 | Msa0931610 | 0.821965 | 3.050136e-53 | -8.615850e-47 |
| Msa0259710 | Msa0958020 | 0.800881 | 1.170676e-48 | -8.615850e-47 |
| Msa0259710 | Msa0990520 | 0.822481 | 2.314411e-53 | -8.615850e-47 |
| Msa0259710 | Msa1002040 | 0.807859 | 4.113913e-50 | -8.615850e-47 |
| Msa0259710 | Msa1004500 | 0.805142 | 1.539674e-49 | -8.615850e-47 |
| Msa0259710 | Msa1046870 | 0.805015 | 1.636753e-49 | -8.615850e-47 |
| Msa0259710 | Msa1129560 | 0.813489 | 2.493803e-51 | -8.615850e-47 |
| Msa0259710 | Msa1149760 | 0.809735 | 1.633496e-50 | -8.615850e-47 |
| Msa0259710 | Msa1173720 | 0.881603 | 2.092870e-70 | -8.615850e-47 |
| Msa0259710 | Msa1173730 | 0.868774 | 5.083480e-66 | -8.615850e-47 |
| Msa0259710 | Msa1175750 | 0.802407 | 5.693721e-49 | -8.615850e-47 |
| Msa0259710 | Msa1220450 | -0.832466 | 9.302053e-56 | -8.615850e-47 |
| Msa0259710 | Msa1220460 | -0.828378 | 9.297189e-55 | -8.615850e-47 |
| Msa0259710 | Msa1220480 | -0.827179 | 1.804927e-54 | -8.615850e-47 |
| Msa0259710 | Msa1223840 | 0.810903 | 9.143491e-51 | -8.615850e-47 |
| Msa0259710 | Msa1235890 | 0.806147 | 9.473477e-50 | -8.615850e-47 |
| Msa0259710 | Msa1254800 | 0.802129 | 6.495472e-49 | -8.615850e-47 |
| Msa0259710 | Msa1265960 | 0.808305 | 3.306279e-50 | -8.615850e-47 |
| Msa0259710 | Msa1323060 | 0.804552 | 2.044680e-49 | -8.615850e-47 |
| Msa0259710 | Msa1341930 | 0.800583 | 1.346212e-48 | -8.615850e-47 |
| Msa0259710 | Msa1352290 | 0.838594 | 2.621267e-57 | -8.615850e-47 |
| Msa0259710 | Msa1354040 | 0.817841 | 2.674688e-52 | -8.615850e-47 |
| Msa0259710 | Msa1367940 | 0.820842 | 5.538801e-53 | -8.615850e-47 |
| Msa0259710 | Msa1381130 | 0.801672 | 8.062324e-49 | -8.615850e-47 |
| Msa0259710 | Msa1431000 | 0.815063 | 1.120276e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259710 | MtrunA17_Chr2g0333701 | 91.613 | 155 | 13 | 0 | 27 | 181 | 19 | 173 | 7.32e-102 | 297 |
| Msa0259710 | MtrunA17_Chr4g0065391 | 48.958 | 96 | 36 | 2 | 94 | 189 | 1542 | 1624 | 4.69e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259710 | AT1G80650.1 | 44.211 | 95 | 43 | 1 | 90 | 184 | 111 | 195 | 1.08e-16 | 77.8 |
| Msa0259710 | AT4G00420.3 | 44.086 | 93 | 41 | 3 | 90 | 182 | 59 | 140 | 4.36e-13 | 67.0 |
| Msa0259710 | AT4G00420.1 | 44.086 | 93 | 41 | 3 | 90 | 182 | 80 | 161 | 6.31e-13 | 67.0 |
| Msa0259710 | AT4G00420.5 | 44.086 | 93 | 41 | 3 | 90 | 182 | 81 | 162 | 6.43e-13 | 67.0 |
| Msa0259710 | AT4G00420.2 | 44.086 | 93 | 41 | 3 | 90 | 182 | 81 | 162 | 6.43e-13 | 67.0 |
| Msa0259710 | AT4G00420.4 | 44.086 | 93 | 41 | 3 | 90 | 182 | 81 | 162 | 6.43e-13 | 67.0 |
| Msa0259710 | AT5G20320.1 | 43.011 | 93 | 42 | 1 | 88 | 180 | 1616 | 1697 | 8.77e-12 | 67.0 |
| Msa0259710 | AT5G20320.3 | 43.011 | 93 | 42 | 1 | 88 | 180 | 1391 | 1472 | 9.40e-12 | 66.6 |
| Msa0259710 | AT5G20320.2 | 43.011 | 93 | 42 | 1 | 88 | 180 | 1602 | 1683 | 9.42e-12 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTCGTATTGTGCTTAT+TGG | 0.272521 | 2_2:+56980080 | Msa0259710:CDS |
| CCCTAAAATGACACTCTCTT+TGG | 0.292490 | 2_2:-56978172 | None:intergenic |
| CTTGAATAATCAAATGAAAA+TGG | 0.300650 | 2_2:+56978074 | Msa0259710:CDS |
| ATTCAAGGTTATTGTTGAAA+TGG | 0.336999 | 2_2:+56979332 | Msa0259710:CDS |
| GTAACCTCATTGGGAAGGTT+TGG | 0.344366 | 2_2:+56980380 | Msa0259710:CDS |
| TCTCTACTTGTTGTATCTTC+AGG | 0.376832 | 2_2:-56979941 | None:intergenic |
| TTCATTTGATTATTCAAGTT+GGG | 0.380029 | 2_2:-56978069 | None:intergenic |
| TTCTTCTCACTCCACCTTCA+AGG | 0.388623 | 2_2:+56977898 | Msa0259710:CDS |
| GTCATCTTCCTTCGCTGTGC+GGG | 0.407572 | 2_2:+56979971 | Msa0259710:CDS |
| ATACAAAGACCATGCTTCTT+CGG | 0.412757 | 2_2:-56980274 | None:intergenic |
| AGAGCTTCTGTAACCTCATT+GGG | 0.434018 | 2_2:+56980371 | Msa0259710:CDS |
| GAGAGCTTCTGTAACCTCAT+TGG | 0.438525 | 2_2:+56980370 | Msa0259710:CDS |
| CCAAGCATGAGCACCGTGTC+TGG | 0.442539 | 2_2:+56980122 | Msa0259710:CDS |
| TGTTTGTTAGGTATGAAGAA+AGG | 0.445413 | 2_2:+56978320 | Msa0259710:intron |
| TTGTGGTACTTAAAGCATAT+AGG | 0.446945 | 2_2:+56979474 | Msa0259710:CDS |
| GTTTGTTAGGTATGAAGAAA+GGG | 0.447288 | 2_2:+56978321 | Msa0259710:intron |
| TTTCATTTGATTATTCAAGT+TGG | 0.449161 | 2_2:-56978070 | None:intergenic |
| TGGAAGATGAAACTGAAGAT+TGG | 0.449737 | 2_2:-56978152 | None:intergenic |
| GGAGTAGGAAGATGATAAAG+TGG | 0.460554 | 2_2:+56980345 | Msa0259710:CDS |
| CCAGACACGGTGCTCATGCT+TGG | 0.470917 | 2_2:-56980122 | None:intergenic |
| GCAGGAGAAGGAGAGTTCCT+TGG | 0.474726 | 2_2:+56980044 | Msa0259710:intron |
| GTTATTGTTGAAATGGAGAC+AGG | 0.475716 | 2_2:+56979339 | Msa0259710:CDS |
| GGCATGGTTTCTATGTCACT+TGG | 0.494818 | 2_2:+56980323 | Msa0259710:CDS |
| ATGAACCTCAACACGACCAC+CGG | 0.503765 | 2_2:+56980241 | Msa0259710:CDS |
| AGACATGTGCTGTAAATCAT+TGG | 0.504933 | 2_2:+56978366 | Msa0259710:CDS |
| GATGCGCAACACAGCATCTC+GGG | 0.506782 | 2_2:+56980180 | Msa0259710:CDS |
| AGCACAATACGAAAGCTTCA+AGG | 0.507043 | 2_2:-56980074 | None:intergenic |
| TTTCTATGTCACTTGGGAGT+AGG | 0.509889 | 2_2:+56980330 | Msa0259710:CDS |
| CAACACAGCATCTCGGGTTG+CGG | 0.523737 | 2_2:+56980186 | Msa0259710:CDS |
| CCATCCCGGTGGTCGTGTTG+AGG | 0.534868 | 2_2:-56980246 | None:intergenic |
| CGTTTGTATTTCAGCAACCA+TGG | 0.536086 | 2_2:-56980157 | None:intergenic |
| GAGTAGGAAGATGATAAAGT+GGG | 0.541740 | 2_2:+56980346 | Msa0259710:CDS |
| AAACCATGCCATCTTCAAGC+TGG | 0.543658 | 2_2:-56980310 | None:intergenic |
| GTACAAATCCAGCTTGAAGA+TGG | 0.545136 | 2_2:+56980302 | Msa0259710:intron |
| GGCAGCAGACAATGCAGCCG+AGG | 0.547846 | 2_2:+56979446 | Msa0259710:CDS |
| AGCTTCAAGGTCTTTCTCCA+AGG | 0.548141 | 2_2:-56980061 | None:intergenic |
| TAAGTACCACAATGCACCCT+CGG | 0.553491 | 2_2:-56979463 | None:intergenic |
| AAGACAACAACTTCAGATGA+AGG | 0.557587 | 2_2:+56978195 | Msa0259710:CDS |
| TTAGGTATGAAGAAAGGGTG+TGG | 0.557962 | 2_2:+56978326 | Msa0259710:intron |
| TGTGTTTGAGTGTTGTAAAG+AGG | 0.558213 | 2_2:+56978397 | Msa0259710:CDS |
| GCAGCAGACAATGCAGCCGA+GGG | 0.565055 | 2_2:+56979447 | Msa0259710:CDS |
| CTTCTTCGGATTGTCCATCC+CGG | 0.566311 | 2_2:-56980260 | None:intergenic |
| GCATGGTTTCTATGTCACTT+GGG | 0.566543 | 2_2:+56980324 | Msa0259710:CDS |
| ATGATCTCAGCTGCAGTCAC+AGG | 0.566923 | 2_2:+56980212 | Msa0259710:CDS |
| TCTTTACAACACTCAAACAC+AGG | 0.578805 | 2_2:-56978395 | None:intergenic |
| CTTCTGTAACCTCATTGGGA+AGG | 0.579543 | 2_2:+56980375 | Msa0259710:CDS |
| CCTCAACACGACCACCGGGA+TGG | 0.580543 | 2_2:+56980246 | Msa0259710:CDS |
| GGATGCGCAACACAGCATCT+CGG | 0.580572 | 2_2:+56980179 | Msa0259710:CDS |
| CACACAATCCCGCACAGCGA+AGG | 0.581547 | 2_2:-56979979 | None:intergenic |
| TGTCATCTTCCTTCGCTGTG+CGG | 0.586769 | 2_2:+56979970 | Msa0259710:CDS |
| CTCTCCAAACCTTCCCAATG+AGG | 0.592938 | 2_2:-56980384 | None:intergenic |
| AATCCAGCTTGAAGATGGCA+TGG | 0.595774 | 2_2:+56980307 | Msa0259710:CDS |
| GTTTGTATTTCAGCAACCAT+GGG | 0.600791 | 2_2:-56980156 | None:intergenic |
| TGAACCTCAACACGACCACC+GGG | 0.601755 | 2_2:+56980242 | Msa0259710:CDS |
| CATGGTTGCTGAAATACAAA+CGG | 0.602757 | 2_2:+56980158 | Msa0259710:CDS |
| ATGGACAATCCGAAGAAGCA+TGG | 0.615251 | 2_2:+56980265 | Msa0259710:CDS |
| TCTGGTTCAACAACTGCCCA+TGG | 0.636749 | 2_2:+56980140 | Msa0259710:CDS |
| ATTATACACAATACAAAACA+TGG | 0.645969 | 2_2:+56977862 | Msa0259710:CDS |
| TTTGAGTGTTGTAAAGAGGA+AGG | 0.648639 | 2_2:+56978401 | Msa0259710:CDS |
| GGCAGTTGTTGAACCAGACA+CGG | 0.650306 | 2_2:-56980135 | None:intergenic |
| TTACAACACTCAAACACAGG+AGG | 0.658087 | 2_2:-56978392 | None:intergenic |
| ACTTACATTATGCAATGACA+TGG | 0.673466 | 2_2:-56978425 | None:intergenic |
| ATGCAGCCGAGGGTGCATTG+TGG | 0.682343 | 2_2:+56979457 | Msa0259710:CDS |
| CTTCGGATTGTCCATCCCGG+TGG | 0.692959 | 2_2:-56980257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTAAAATAAATAAT+TGG | + | chr2_2:56977944-56977963 | Msa0259710:intron | 0.0% |
| !! | TTTAATTAAAATAAATAATT+GGG | + | chr2_2:56977945-56977964 | Msa0259710:intron | 0.0% |
| !!! | TTTTTATTTATGAAAAATGA+AGG | + | chr2_2:56978449-56978468 | Msa0259710:intron | 10.0% |
| !!! | TTTTATTTATGAAAAATGAA+GGG | + | chr2_2:56978450-56978469 | Msa0259710:intron | 10.0% |
| !! | AAAAAAAATTATTACCTTGA+AGG | - | chr2_2:56977915-56977934 | None:intergenic | 15.0% |
| !!! | ACAAAAAAAATGAACTTTTT+TGG | - | chr2_2:56978250-56978269 | None:intergenic | 15.0% |
| !! | AGTACAAATTATTGTATTAT+TGG | + | chr2_2:56979523-56979542 | Msa0259710:intron | 15.0% |
| !! | ATTATACACAATACAAAACA+TGG | + | chr2_2:56977862-56977881 | Msa0259710:CDS | 20.0% |
| !!! | TTCATTTGATTATTCAAGTT+GGG | - | chr2_2:56978072-56978091 | None:intergenic | 20.0% |
| !! | TTTCATTTGATTATTCAAGT+TGG | - | chr2_2:56978073-56978092 | None:intergenic | 20.0% |
| !! | CTTGAATAATCAAATGAAAA+TGG | + | chr2_2:56978074-56978093 | Msa0259710:CDS | 20.0% |
| !!! | AATGAGAAAAATGAGTATTT+TGG | + | chr2_2:56978291-56978310 | Msa0259710:intron | 20.0% |
| !!! | TTTTGGTATTATTGTTTGTT+AGG | + | chr2_2:56978308-56978327 | Msa0259710:intron | 20.0% |
| !!! | GAAATGAAATTTTCTATAAG+TGG | + | chr2_2:56978498-56978517 | Msa0259710:intron | 20.0% |
| !! | ATATAAACAACTTACAACTT+AGG | + | chr2_2:56978689-56978708 | Msa0259710:intron | 20.0% |
| !! | TCATTATGAATTGTAGAAAA+GGG | - | chr2_2:56979242-56979261 | None:intergenic | 20.0% |
| !! | TTCATTATGAATTGTAGAAA+AGG | - | chr2_2:56979243-56979262 | None:intergenic | 20.0% |
| ! | AAAAATTATTACCTTGAAGG+TGG | - | chr2_2:56977912-56977931 | None:intergenic | 25.0% |
| ! | AAAAGTTTATGCTGCAAAAA+TGG | + | chr2_2:56978041-56978060 | Msa0259710:CDS | 25.0% |
| ! | GGAAAACATGCAATAATTAA+TGG | - | chr2_2:56978229-56978248 | None:intergenic | 25.0% |
| ! | AATGAAGGGAAAAAAAACTA+TGG | + | chr2_2:56978464-56978483 | Msa0259710:intron | 25.0% |
| ! | TCTCAAATTATTAACAGTGT+CGG | + | chr2_2:56978878-56978897 | Msa0259710:intron | 25.0% |
| ! | AATATTGCAAAAGATTTAGC+TGG | - | chr2_2:56979115-56979134 | None:intergenic | 25.0% |
| ! | TCATGCAATAAGACAAATAT+TGG | - | chr2_2:56979198-56979217 | None:intergenic | 25.0% |
| ! | AAAGGGAAGCAAAATATAAT+AGG | - | chr2_2:56979225-56979244 | None:intergenic | 25.0% |
| ! | TCTACAATTCATAATGAAAC+TGG | + | chr2_2:56979245-56979264 | Msa0259710:intron | 25.0% |
| ! | ATTCAAGGTTATTGTTGAAA+TGG | + | chr2_2:56979332-56979351 | Msa0259710:CDS | 25.0% |
| !! | ATAAACCTCTACAATGTTTT+TGG | - | chr2_2:56979400-56979419 | None:intergenic | 25.0% |
| ! | AAAAACATTGTAGAGGTTTA+TGG | + | chr2_2:56979399-56979418 | Msa0259710:CDS | 25.0% |
| ! | TCCTCATCAAAAAAAGAAAA+TGG | + | chr2_2:56979425-56979444 | Msa0259710:CDS | 25.0% |
| ! | GTAGATGTTAATGAAACAAA+TGG | - | chr2_2:56979825-56979844 | None:intergenic | 25.0% |
| ! | TTGCAGCATAAACTTTTGTT+CGG | - | chr2_2:56978038-56978057 | None:intergenic | 30.0% |
| ! | TGTTTGTTAGGTATGAAGAA+AGG | + | chr2_2:56978320-56978339 | Msa0259710:intron | 30.0% |
| ! | GTTTGTTAGGTATGAAGAAA+GGG | + | chr2_2:56978321-56978340 | Msa0259710:intron | 30.0% |
| ACTTACATTATGCAATGACA+TGG | - | chr2_2:56978428-56978447 | None:intergenic | 30.0% | |
| ! | AAGTGGTATATTTTGTGTGT+TGG | + | chr2_2:56978515-56978534 | Msa0259710:intron | 30.0% |
| TTAGAAGATGCATAGATTAG+TGG | + | chr2_2:56978723-56978742 | Msa0259710:intron | 30.0% | |
| AAGATTATTCCATTGCATGT+TGG | + | chr2_2:56979086-56979105 | Msa0259710:intron | 30.0% | |
| ! | GACAAATATTGGTTGATATC+TGG | - | chr2_2:56979187-56979206 | None:intergenic | 30.0% |
| ACAATTCATAATGAAACTGG+AGG | + | chr2_2:56979248-56979267 | Msa0259710:intron | 30.0% | |
| AACCTGTGAAAAACATCAAT+TGG | - | chr2_2:56979309-56979328 | None:intergenic | 30.0% | |
| ! | TTTTCACAGGTTTACATTCA+AGG | + | chr2_2:56979317-56979336 | Msa0259710:intron | 30.0% |
| AGTAACCAAAAACATTGTAG+AGG | + | chr2_2:56979392-56979411 | Msa0259710:CDS | 30.0% | |
| !!! | GCCATTTTCTTTTTTTGATG+AGG | - | chr2_2:56979429-56979448 | None:intergenic | 30.0% |
| TTGTGGTACTTAAAGCATAT+AGG | + | chr2_2:56979474-56979493 | Msa0259710:CDS | 30.0% | |
| ! | CACAAAGTTATTTCATTCCT+CGG | + | chr2_2:56979575-56979594 | Msa0259710:intron | 30.0% |
| !!! | TTTTTTGTGCGCCTATTTAA+CGG | - | chr2_2:56979783-56979802 | None:intergenic | 30.0% |
| GATGTTAATGAAACAAATGG+CGG | - | chr2_2:56979822-56979841 | None:intergenic | 30.0% | |
| CAAGAAATCAGAAACAAGAT+CGG | - | chr2_2:56979865-56979884 | None:intergenic | 30.0% | |
| !!! | GCATCAATGTTTTTCAAGAC+TGG | - | chr2_2:56978129-56978148 | None:intergenic | 35.0% |
| TGGAAGATGAAACTGAAGAT+TGG | - | chr2_2:56978155-56978174 | None:intergenic | 35.0% | |
| !!! | TCCAAAGAGAGTGTCATTTT+AGG | + | chr2_2:56978171-56978190 | Msa0259710:CDS | 35.0% |
| !!! | CCAAAGAGAGTGTCATTTTA+GGG | + | chr2_2:56978172-56978191 | Msa0259710:CDS | 35.0% |
| AAGACAACAACTTCAGATGA+AGG | + | chr2_2:56978195-56978214 | Msa0259710:CDS | 35.0% | |
| AGACATGTGCTGTAAATCAT+TGG | + | chr2_2:56978366-56978385 | Msa0259710:CDS | 35.0% | |
| TCTTTACAACACTCAAACAC+AGG | - | chr2_2:56978398-56978417 | None:intergenic | 35.0% | |
| ! | TGTGTTTGAGTGTTGTAAAG+AGG | + | chr2_2:56978397-56978416 | Msa0259710:CDS | 35.0% |
| ! | TTTGAGTGTTGTAAAGAGGA+AGG | + | chr2_2:56978401-56978420 | Msa0259710:CDS | 35.0% |
| !!! | TTTTTTCGCTGTGCGATTAT+AGG | + | chr2_2:56978612-56978631 | Msa0259710:intron | 35.0% |
| ! | TTTTTCGCTGTGCGATTATA+GGG | + | chr2_2:56978613-56978632 | Msa0259710:intron | 35.0% |
| TCAGCTGTAGATTTCAAATC+AGG | + | chr2_2:56978659-56978678 | Msa0259710:intron | 35.0% | |
| ! | GACCAATTGATGTTTTTCAC+AGG | + | chr2_2:56979304-56979323 | Msa0259710:intron | 35.0% |
| GTTATTGTTGAAATGGAGAC+AGG | + | chr2_2:56979339-56979358 | Msa0259710:CDS | 35.0% | |
| AAATAACTTTGTGGCAGTAG+AGG | - | chr2_2:56979568-56979587 | None:intergenic | 35.0% | |
| CGAGGAATGAAATAACTTTG+TGG | - | chr2_2:56979577-56979596 | None:intergenic | 35.0% | |
| TGTTTCCTTTGTTGCATTAC+TGG | + | chr2_2:56979737-56979756 | Msa0259710:intron | 35.0% | |
| AAATGCCAGTAATGCAACAA+AGG | - | chr2_2:56979745-56979764 | None:intergenic | 35.0% | |
| !! | TCTCTACTTGTTGTATCTTC+AGG | - | chr2_2:56979944-56979963 | None:intergenic | 35.0% |
| AGCTTTCGTATTGTGCTTAT+TGG | + | chr2_2:56980080-56980099 | Msa0259710:CDS | 35.0% | |
| GTTTGTATTTCAGCAACCAT+GGG | - | chr2_2:56980159-56980178 | None:intergenic | 35.0% | |
| CATGGTTGCTGAAATACAAA+CGG | + | chr2_2:56980158-56980177 | Msa0259710:CDS | 35.0% | |
| ATACAAAGACCATGCTTCTT+CGG | - | chr2_2:56980277-56980296 | None:intergenic | 35.0% | |
| GAGTAGGAAGATGATAAAGT+GGG | + | chr2_2:56980346-56980365 | Msa0259710:CDS | 35.0% | |
| CCCTAAAATGACACTCTCTT+TGG | - | chr2_2:56978175-56978194 | None:intergenic | 40.0% | |
| TTAGGTATGAAGAAAGGGTG+TGG | + | chr2_2:56978326-56978345 | Msa0259710:intron | 40.0% | |
| TTACAACACTCAAACACAGG+AGG | - | chr2_2:56978395-56978414 | None:intergenic | 40.0% | |
| TATGTGCTTGAGTGCTTCAT+AGG | - | chr2_2:56978764-56978783 | None:intergenic | 40.0% | |
| TATATGTGTCAGTGTCGTGT+CGG | - | chr2_2:56978836-56978855 | None:intergenic | 40.0% | |
| ! | GACGTTTTATGCAGGTATCT+GGG | - | chr2_2:56979005-56979024 | None:intergenic | 40.0% |
| GATGTTAGAGCCTAGTGTTT+CGG | - | chr2_2:56979034-56979053 | None:intergenic | 40.0% | |
| TTGGATATCATCAACAGCCA+AGG | + | chr2_2:56979542-56979561 | Msa0259710:intron | 40.0% | |
| AAGTCTAGATAGCATTACCG+AGG | - | chr2_2:56979595-56979614 | None:intergenic | 40.0% | |
| TCGGTAATGCTATCTAGACT+TGG | + | chr2_2:56979594-56979613 | Msa0259710:intron | 40.0% | |
| GAGCATGGTCTTCTGATTAT+TGG | - | chr2_2:56979623-56979642 | None:intergenic | 40.0% | |
| ACAGATTTGGCAGGAAAAAG+AGG | - | chr2_2:56979657-56979676 | None:intergenic | 40.0% | |
| GTGATAGCAATACAGCAAAC+AGG | - | chr2_2:56979689-56979708 | None:intergenic | 40.0% | |
| TTGCTGTATTGCTATCACGA+AGG | + | chr2_2:56979691-56979710 | Msa0259710:intron | 40.0% | |
| AGCACAATACGAAAGCTTCA+AGG | - | chr2_2:56980077-56980096 | None:intergenic | 40.0% | |
| CGTTTGTATTTCAGCAACCA+TGG | - | chr2_2:56980160-56980179 | None:intergenic | 40.0% | |
| GTACAAATCCAGCTTGAAGA+TGG | + | chr2_2:56980302-56980321 | Msa0259710:intron | 40.0% | |
| ! | GCATGGTTTCTATGTCACTT+GGG | + | chr2_2:56980324-56980343 | Msa0259710:CDS | 40.0% |
| ! | TTTCTATGTCACTTGGGAGT+AGG | + | chr2_2:56980330-56980349 | Msa0259710:CDS | 40.0% |
| GGAGTAGGAAGATGATAAAG+TGG | + | chr2_2:56980345-56980364 | Msa0259710:CDS | 40.0% | |
| AGAGCTTCTGTAACCTCATT+GGG | + | chr2_2:56980371-56980390 | Msa0259710:CDS | 40.0% | |
| TTCTTCTCACTCCACCTTCA+AGG | + | chr2_2:56977898-56977917 | Msa0259710:CDS | 45.0% | |
| CTGTGCGATTATAGGGAAAC+TGG | + | chr2_2:56978620-56978639 | Msa0259710:intron | 45.0% | |
| TGAGTGCTTCATAGGTGTGT+GGG | - | chr2_2:56978756-56978775 | None:intergenic | 45.0% | |
| TTGAGTGCTTCATAGGTGTG+TGG | - | chr2_2:56978757-56978776 | None:intergenic | 45.0% | |
| ACTCAAGCACATACACTCCT+CGG | + | chr2_2:56978771-56978790 | Msa0259710:intron | 45.0% | |
| ATGAAGCACGGATATGGACA+CGG | - | chr2_2:56978933-56978952 | None:intergenic | 45.0% | |
| TTCATAGCCACACACAGACA+CGG | + | chr2_2:56978948-56978967 | Msa0259710:intron | 45.0% | |
| ! | GGACGTTTTATGCAGGTATC+TGG | - | chr2_2:56979006-56979025 | None:intergenic | 45.0% |
| AGCTGGATACCAACATGCAA+TGG | - | chr2_2:56979098-56979117 | None:intergenic | 45.0% | |
| TAAGTACCACAATGCACCCT+CGG | - | chr2_2:56979466-56979485 | None:intergenic | 45.0% | |
| TCAGAAGACCATGCTCTCTT+AGG | + | chr2_2:56979627-56979646 | Msa0259710:intron | 45.0% | |
| AAGAGGAAGACAGATTTGGC+AGG | - | chr2_2:56979666-56979685 | None:intergenic | 45.0% | |
| CAGGAAGAGGAAGACAGATT+TGG | - | chr2_2:56979670-56979689 | None:intergenic | 45.0% | |
| GCAATACAGCAAACAGGAAG+AGG | - | chr2_2:56979683-56979702 | None:intergenic | 45.0% | |
| TAGTCACGCCTCCGTTAAAT+AGG | + | chr2_2:56979769-56979788 | Msa0259710:intron | 45.0% | |
| TTTGTGCGCCTATTTAACGG+AGG | - | chr2_2:56979780-56979799 | None:intergenic | 45.0% | |
| CCTGCTCGTGAAATGACAAT+CGG | - | chr2_2:56980029-56980048 | None:intergenic | 45.0% | |
| AGCTTCAAGGTCTTTCTCCA+AGG | - | chr2_2:56980064-56980083 | None:intergenic | 45.0% | |
| ATGGACAATCCGAAGAAGCA+TGG | + | chr2_2:56980265-56980284 | Msa0259710:CDS | 45.0% | |
| AATCCAGCTTGAAGATGGCA+TGG | + | chr2_2:56980307-56980326 | Msa0259710:CDS | 45.0% | |
| AAACCATGCCATCTTCAAGC+TGG | - | chr2_2:56980313-56980332 | None:intergenic | 45.0% | |
| GGCATGGTTTCTATGTCACT+TGG | + | chr2_2:56980323-56980342 | Msa0259710:CDS | 45.0% | |
| GAGAGCTTCTGTAACCTCAT+TGG | + | chr2_2:56980370-56980389 | Msa0259710:CDS | 45.0% | |
| CTTCTGTAACCTCATTGGGA+AGG | + | chr2_2:56980375-56980394 | Msa0259710:CDS | 45.0% | |
| GTAACCTCATTGGGAAGGTT+TGG | + | chr2_2:56980380-56980399 | Msa0259710:CDS | 45.0% | |
| !!! | TTGTTTTTTTTTTTTTAAAT+TGG | + | chr2_2:56977979-56977998 | Msa0259710:intron | 5.0% |
| TTCATAGGTGTGTGGGCACT+AGG | - | chr2_2:56978749-56978768 | None:intergenic | 50.0% | |
| GCACATACACTCCTCGGATT+AGG | + | chr2_2:56978777-56978796 | Msa0259710:intron | 50.0% | |
| ACGGATATGGACACGGAAAC+CGG | - | chr2_2:56978926-56978945 | None:intergenic | 50.0% | |
| GTGGCTATGAAGCACGGATA+TGG | - | chr2_2:56978939-56978958 | None:intergenic | 50.0% | |
| CTGTGTGTGGCTATGAAGCA+CGG | - | chr2_2:56978945-56978964 | None:intergenic | 50.0% | |
| ! | GGAGTGTGGACGTTTTATGC+AGG | - | chr2_2:56979013-56979032 | None:intergenic | 50.0% |
| TGTCATCTTCCTTCGCTGTG+CGG | + | chr2_2:56979970-56979989 | Msa0259710:CDS | 50.0% | |
| ! | CCGATTGTCATTTCACGAGC+AGG | + | chr2_2:56980026-56980045 | Msa0259710:intron | 50.0% |
| GTCATTTCACGAGCAGGAGA+AGG | + | chr2_2:56980032-56980051 | Msa0259710:intron | 50.0% | |
| GGCAGTTGTTGAACCAGACA+CGG | - | chr2_2:56980138-56980157 | None:intergenic | 50.0% | |
| ! | TCTGGTTCAACAACTGCCCA+TGG | + | chr2_2:56980140-56980159 | Msa0259710:CDS | 50.0% |
| ATGATCTCAGCTGCAGTCAC+AGG | + | chr2_2:56980212-56980231 | Msa0259710:CDS | 50.0% | |
| ATGAACCTCAACACGACCAC+CGG | + | chr2_2:56980241-56980260 | Msa0259710:CDS | 50.0% | |
| CTTCTTCGGATTGTCCATCC+CGG | - | chr2_2:56980263-56980282 | None:intergenic | 50.0% | |
| CTCTCCAAACCTTCCCAATG+AGG | - | chr2_2:56980387-56980406 | None:intergenic | 50.0% | |
| ! | TGTCAGTGTCGTGTCGGTGT+TGG | - | chr2_2:56978830-56978849 | None:intergenic | 55.0% |
| GTCAGTATGCGTGTCGTGTC+CGG | + | chr2_2:56978904-56978923 | Msa0259710:intron | 55.0% | |
| AGGTATCTGGGCTTGATCCC+AGG | - | chr2_2:56978993-56979012 | None:intergenic | 55.0% | |
| CGTCCACACTCCGAAACACT+AGG | + | chr2_2:56979021-56979040 | Msa0259710:intron | 55.0% | |
| GAGCCTAGTGTTTCGGAGTG+TGG | - | chr2_2:56979027-56979046 | None:intergenic | 55.0% | |
| CTTTGTGGCAGTAGAGGCCT+TGG | - | chr2_2:56979562-56979581 | None:intergenic | 55.0% | |
| GAGGCTCTCCTAAGAGAGCA+TGG | - | chr2_2:56979638-56979657 | None:intergenic | 55.0% | |
| GTCATCTTCCTTCGCTGTGC+GGG | + | chr2_2:56979971-56979990 | Msa0259710:CDS | 55.0% | |
| GCAGGAGAAGGAGAGTTCCT+TGG | + | chr2_2:56980044-56980063 | Msa0259710:intron | 55.0% | |
| GGATGCGCAACACAGCATCT+CGG | + | chr2_2:56980179-56980198 | Msa0259710:CDS | 55.0% | |
| GATGCGCAACACAGCATCTC+GGG | + | chr2_2:56980180-56980199 | Msa0259710:CDS | 55.0% | |
| ! | CAACACAGCATCTCGGGTTG+CGG | + | chr2_2:56980186-56980205 | Msa0259710:CDS | 55.0% |
| TGAACCTCAACACGACCACC+GGG | + | chr2_2:56980242-56980261 | Msa0259710:CDS | 55.0% | |
| ! | ACTCCTCGGATTAGGCGTCC+CGG | + | chr2_2:56978785-56978804 | Msa0259710:intron | 60.0% |
| ACACGACACCTGTCCGACAC+CGG | - | chr2_2:56978807-56978826 | None:intergenic | 60.0% | |
| AGCCACACACAGACACGGAG+AGG | + | chr2_2:56978953-56978972 | Msa0259710:intron | 60.0% | |
| GCCACACACAGACACGGAGA+GGG | + | chr2_2:56978954-56978973 | Msa0259710:intron | 60.0% | |
| CCACACACAGACACGGAGAG+GGG | + | chr2_2:56978955-56978974 | Msa0259710:intron | 60.0% | |
| CACACACAGACACGGAGAGG+GGG | + | chr2_2:56978956-56978975 | Msa0259710:intron | 60.0% | |
| ACAGACACGGAGAGGGGGAA+GGG | + | chr2_2:56978961-56978980 | Msa0259710:intron | 60.0% | |
| AGGGGGAAGGGTGGAAACCT+GGG | + | chr2_2:56978973-56978992 | Msa0259710:intron | 60.0% | |
| GCAGCAGACAATGCAGCCGA+GGG | + | chr2_2:56979447-56979466 | Msa0259710:CDS | 60.0% | |
| ! | ATGCAGCCGAGGGTGCATTG+TGG | + | chr2_2:56979457-56979476 | Msa0259710:CDS | 60.0% |
| CACACAATCCCGCACAGCGA+AGG | - | chr2_2:56979982-56980001 | None:intergenic | 60.0% | |
| CCAGACACGGTGCTCATGCT+TGG | - | chr2_2:56980125-56980144 | None:intergenic | 60.0% | |
| ! | CCAAGCATGAGCACCGTGTC+TGG | + | chr2_2:56980122-56980141 | Msa0259710:CDS | 60.0% |
| CTTCGGATTGTCCATCCCGG+TGG | - | chr2_2:56980260-56980279 | None:intergenic | 60.0% | |
| ACACCGGGACGCCTAATCCG+AGG | - | chr2_2:56978791-56978810 | None:intergenic | 65.0% | |
| ! | CGGATTAGGCGTCCCGGTGT+CGG | + | chr2_2:56978791-56978810 | Msa0259710:intron | 65.0% |
| CACGACACCTGTCCGACACC+GGG | - | chr2_2:56978806-56978825 | None:intergenic | 65.0% | |
| CCCCTCTCCGTGTCTGTGTG+TGG | - | chr2_2:56978958-56978977 | None:intergenic | 65.0% | |
| CACAGACACGGAGAGGGGGA+AGG | + | chr2_2:56978960-56978979 | Msa0259710:intron | 65.0% | |
| GAGGGGGAAGGGTGGAAACC+TGG | + | chr2_2:56978972-56978991 | Msa0259710:intron | 65.0% | |
| GGCAGCAGACAATGCAGCCG+AGG | + | chr2_2:56979446-56979465 | Msa0259710:CDS | 65.0% | |
| CCATCCCGGTGGTCGTGTTG+AGG | - | chr2_2:56980249-56980268 | None:intergenic | 65.0% | |
| CCTCAACACGACCACCGGGA+TGG | + | chr2_2:56980246-56980265 | Msa0259710:CDS | 65.0% | |
| ! | TAGGCGTCCCGGTGTCGGAC+AGG | + | chr2_2:56978796-56978815 | Msa0259710:intron | 70.0% |
| GACACGGAGAGGGGGAAGGG+TGG | + | chr2_2:56978964-56978983 | Msa0259710:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 56977846 | 56980412 | 56977846 | ID=Msa0259710;Name=Msa0259710 |
| chr2_2 | mRNA | 56977846 | 56980412 | 56977846 | ID=Msa0259710-mRNA-1;Parent=Msa0259710;Name=Msa0259710-mRNA-1;_AED=0.19;_eAED=0.25;_QI=0|0.5|0.28|1|0.5|0.28|7|0|333 |
| chr2_2 | exon | 56977846 | 56977919 | 56977846 | ID=Msa0259710-mRNA-1:exon:17251;Parent=Msa0259710-mRNA-1 |
| chr2_2 | exon | 56978029 | 56978216 | 56978029 | ID=Msa0259710-mRNA-1:exon:17252;Parent=Msa0259710-mRNA-1 |
| chr2_2 | exon | 56978330 | 56978441 | 56978330 | ID=Msa0259710-mRNA-1:exon:17253;Parent=Msa0259710-mRNA-1 |
| chr2_2 | exon | 56979326 | 56979495 | 56979326 | ID=Msa0259710-mRNA-1:exon:17254;Parent=Msa0259710-mRNA-1 |
| chr2_2 | exon | 56979912 | 56980017 | 56979912 | ID=Msa0259710-mRNA-1:exon:17255;Parent=Msa0259710-mRNA-1 |
| chr2_2 | exon | 56980048 | 56980286 | 56980048 | ID=Msa0259710-mRNA-1:exon:17256;Parent=Msa0259710-mRNA-1 |
| chr2_2 | exon | 56980303 | 56980412 | 56980303 | ID=Msa0259710-mRNA-1:exon:17257;Parent=Msa0259710-mRNA-1 |
| chr2_2 | CDS | 56977846 | 56977919 | 56977846 | ID=Msa0259710-mRNA-1:cds;Parent=Msa0259710-mRNA-1 |
| chr2_2 | CDS | 56978029 | 56978216 | 56978029 | ID=Msa0259710-mRNA-1:cds;Parent=Msa0259710-mRNA-1 |
| chr2_2 | CDS | 56978330 | 56978441 | 56978330 | ID=Msa0259710-mRNA-1:cds;Parent=Msa0259710-mRNA-1 |
| chr2_2 | CDS | 56979326 | 56979495 | 56979326 | ID=Msa0259710-mRNA-1:cds;Parent=Msa0259710-mRNA-1 |
| chr2_2 | CDS | 56979912 | 56980017 | 56979912 | ID=Msa0259710-mRNA-1:cds;Parent=Msa0259710-mRNA-1 |
| chr2_2 | CDS | 56980048 | 56980286 | 56980048 | ID=Msa0259710-mRNA-1:cds;Parent=Msa0259710-mRNA-1 |
| chr2_2 | CDS | 56980303 | 56980412 | 56980303 | ID=Msa0259710-mRNA-1:cds;Parent=Msa0259710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
