AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0331910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0331910 MtrunA17_Chr2g0333701 91.613 155 13 0 27 181 19 173 7.32e-102 297
Msa0331910 MtrunA17_Chr4g0065391 48.958 96 36 2 94 189 1542 1624 4.69e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0331910 AT1G80650.1 44.211 95 43 1 90 184 111 195 1.08e-16 77.8
Msa0331910 AT4G00420.3 44.086 93 41 3 90 182 59 140 4.36e-13 67.0
Msa0331910 AT4G00420.1 44.086 93 41 3 90 182 80 161 6.31e-13 67.0
Msa0331910 AT4G00420.5 44.086 93 41 3 90 182 81 162 6.43e-13 67.0
Msa0331910 AT4G00420.2 44.086 93 41 3 90 182 81 162 6.43e-13 67.0
Msa0331910 AT4G00420.4 44.086 93 41 3 90 182 81 162 6.43e-13 67.0
Msa0331910 AT5G20320.1 43.011 93 42 1 88 180 1616 1697 8.77e-12 67.0
Msa0331910 AT5G20320.3 43.011 93 42 1 88 180 1391 1472 9.40e-12 66.6
Msa0331910 AT5G20320.2 43.011 93 42 1 88 180 1602 1683 9.42e-12 66.6

Find 64 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTCGTATTGTGCTTAT+TGG 0.272521 2_4:-47980137 Msa0331910:CDS
CCCTAAAATGACACTCTCTT+TGG 0.292490 2_4:+47982095 None:intergenic
CTTGAATAATCAAATGAAAA+TGG 0.300650 2_4:-47982193 Msa0331910:CDS
ATTCAAGGTTATTGTTGAAA+TGG 0.336999 2_4:-47980885 Msa0331910:CDS
GTAACCTCATTGGGAAGGTT+TGG 0.344366 2_4:-47979837 Msa0331910:CDS
TCTCTACTTGTTGTATCTTC+AGG 0.376832 2_4:+47980276 None:intergenic
TTCATTTGATTATTCAAGTT+GGG 0.380029 2_4:+47982198 None:intergenic
TTCTTCTCACTCCACCTTCA+AGG 0.388623 2_4:-47982365 Msa0331910:intron
GTCATCTTCCTTCGCTGTGC+GGG 0.407572 2_4:-47980246 Msa0331910:CDS
ATACAAAGACCATGCTTCTT+CGG 0.412757 2_4:+47979943 None:intergenic
AGAGCTTCTGTAACCTCATT+GGG 0.434018 2_4:-47979846 Msa0331910:CDS
GAGAGCTTCTGTAACCTCAT+TGG 0.438525 2_4:-47979847 Msa0331910:CDS
CCAAGCATGAGCACCGTGTC+TGG 0.442539 2_4:-47980095 Msa0331910:CDS
TGTTTGTTAGGTATGAAGAA+AGG 0.445413 2_4:-47981947 Msa0331910:intron
TTGTGGTACTTAAAGCATAT+AGG 0.446945 2_4:-47980743 Msa0331910:intron
GTTTGTTAGGTATGAAGAAA+GGG 0.447288 2_4:-47981946 Msa0331910:intron
TTTCATTTGATTATTCAAGT+TGG 0.449161 2_4:+47982197 None:intergenic
TGGAAGATGAAACTGAAGAT+TGG 0.449737 2_4:+47982115 None:intergenic
GGAGTAGGAAGATGATAAAG+TGG 0.460554 2_4:-47979872 Msa0331910:CDS
CCAGACACGGTGCTCATGCT+TGG 0.470917 2_4:+47980095 None:intergenic
GCAGGAGAAGGAGAGTTCCT+TGG 0.474726 2_4:-47980173 Msa0331910:intron
GTTATTGTTGAAATGGAGAC+AGG 0.475716 2_4:-47980878 Msa0331910:CDS
GGCATGGTTTCTATGTCACT+TGG 0.494818 2_4:-47979894 Msa0331910:CDS
ATGAACCTCAACACGACCAC+CGG 0.503765 2_4:-47979976 Msa0331910:CDS
AGACATGTGCTGTAAATCAT+TGG 0.504933 2_4:-47981901 Msa0331910:CDS
GATGCGCAACACAGCATCTC+GGG 0.506782 2_4:-47980037 Msa0331910:CDS
AGCACAATACGAAAGCTTCA+AGG 0.507043 2_4:+47980143 None:intergenic
TTTCTATGTCACTTGGGAGT+AGG 0.509889 2_4:-47979887 Msa0331910:CDS
CAACACAGCATCTCGGGTTG+CGG 0.523737 2_4:-47980031 Msa0331910:CDS
CCATCCCGGTGGTCGTGTTG+AGG 0.534868 2_4:+47979971 None:intergenic
CGTTTGTATTTCAGCAACCA+TGG 0.536086 2_4:+47980060 None:intergenic
GAGTAGGAAGATGATAAAGT+GGG 0.541740 2_4:-47979871 Msa0331910:CDS
AAACCATGCCATCTTCAAGC+TGG 0.543658 2_4:+47979907 None:intergenic
GTACAAATCCAGCTTGAAGA+TGG 0.545136 2_4:-47979915 Msa0331910:CDS
GGCAGCAGACAATGCAGCCG+AGG 0.547846 2_4:-47980771 Msa0331910:CDS
AGCTTCAAGGTCTTTCTCCA+AGG 0.548141 2_4:+47980156 None:intergenic
TAAGTACCACAATGCACCCT+CGG 0.553491 2_4:+47980754 None:intergenic
AAGACAACAACTTCAGATGA+AGG 0.557587 2_4:-47982072 Msa0331910:intron
TTAGGTATGAAGAAAGGGTG+TGG 0.557962 2_4:-47981941 Msa0331910:intron
TGTGTTTGAGTGTTGTAAAG+AGG 0.558213 2_4:-47981870 Msa0331910:CDS
GCAGCAGACAATGCAGCCGA+GGG 0.565055 2_4:-47980770 Msa0331910:CDS
CTTCTTCGGATTGTCCATCC+CGG 0.566311 2_4:+47979957 None:intergenic
GCATGGTTTCTATGTCACTT+GGG 0.566543 2_4:-47979893 Msa0331910:CDS
ATGATCTCAGCTGCAGTCAC+AGG 0.566923 2_4:-47980005 Msa0331910:CDS
TCTTTACAACACTCAAACAC+AGG 0.578805 2_4:+47981872 None:intergenic
CTTCTGTAACCTCATTGGGA+AGG 0.579543 2_4:-47979842 Msa0331910:CDS
CCTCAACACGACCACCGGGA+TGG 0.580543 2_4:-47979971 Msa0331910:CDS
GGATGCGCAACACAGCATCT+CGG 0.580572 2_4:-47980038 Msa0331910:CDS
CACACAATCCCGCACAGCGA+AGG 0.581547 2_4:+47980238 None:intergenic
TGTCATCTTCCTTCGCTGTG+CGG 0.586769 2_4:-47980247 Msa0331910:CDS
CTCTCCAAACCTTCCCAATG+AGG 0.592938 2_4:+47979833 None:intergenic
AATCCAGCTTGAAGATGGCA+TGG 0.595774 2_4:-47979910 Msa0331910:CDS
GTTTGTATTTCAGCAACCAT+GGG 0.600791 2_4:+47980061 None:intergenic
TGAACCTCAACACGACCACC+GGG 0.601755 2_4:-47979975 Msa0331910:CDS
CATGGTTGCTGAAATACAAA+CGG 0.602757 2_4:-47980059 Msa0331910:CDS
ATGGACAATCCGAAGAAGCA+TGG 0.615251 2_4:-47979952 Msa0331910:intron
TCTGGTTCAACAACTGCCCA+TGG 0.636749 2_4:-47980077 Msa0331910:CDS
ATTATACACAATACAAAACA+TGG 0.645969 2_4:-47982401 Msa0331910:CDS
TTTGAGTGTTGTAAAGAGGA+AGG 0.648639 2_4:-47981866 Msa0331910:CDS
GGCAGTTGTTGAACCAGACA+CGG 0.650306 2_4:+47980082 None:intergenic
TTACAACACTCAAACACAGG+AGG 0.658087 2_4:+47981875 None:intergenic
ACTTACATTATGCAATGACA+TGG 0.673466 2_4:+47981842 None:intergenic
ATGCAGCCGAGGGTGCATTG+TGG 0.682343 2_4:-47980760 Msa0331910:CDS
CTTCGGATTGTCCATCCCGG+TGG 0.692959 2_4:+47979960 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTAAAATAAATAAT+TGG - chr2_4:47979925-47979944 Msa0331910:intron 0.0%
!! TTTAATTAAAATAAATAATT+GGG - chr2_4:47979926-47979945 Msa0331910:intron 0.0%
!!! AAAATTTTTTTTTTTTAAAT+TGG - chr2_4:47979956-47979975 Msa0331910:CDS 0.0%
!!! TTTTTATTTATGAAAAATGA+AGG - chr2_4:47980426-47980445 Msa0331910:intron 10.0%
!!! TTTTATTTATGAAAAATGAA+GGG - chr2_4:47980427-47980446 Msa0331910:intron 10.0%
!! AAAAAAAATTATTACCTTGA+AGG + chr2_4:47979896-47979915 None:intergenic 15.0%
!!! ACAAAAAAAATGAACTTTTT+TGG + chr2_4:47980227-47980246 None:intergenic 15.0%
!! AGTACAAATTATTGTATTAT+TGG - chr2_4:47981550-47981569 Msa0331910:intron 15.0%
!! ATTATACACAATACAAAACA+TGG - chr2_4:47979843-47979862 Msa0331910:CDS 20.0%
!!! TTCATTTGATTATTCAAGTT+GGG + chr2_4:47980049-47980068 None:intergenic 20.0%
!! TTTCATTTGATTATTCAAGT+TGG + chr2_4:47980050-47980069 None:intergenic 20.0%
!! CTTGAATAATCAAATGAAAA+TGG - chr2_4:47980051-47980070 Msa0331910:CDS 20.0%
!!! AATGAGAAAAATGAGTATTT+TGG - chr2_4:47980268-47980287 Msa0331910:CDS 20.0%
!!! TTTTGGTATTATTGTTTGTT+AGG - chr2_4:47980285-47980304 Msa0331910:CDS 20.0%
!!! GAAATGAAATTTTCTATAAG+TGG - chr2_4:47980475-47980494 Msa0331910:intron 20.0%
!! ATATAAACAACTTACAACTT+AGG - chr2_4:47980716-47980735 Msa0331910:intron 20.0%
!! TCATTATGAATTGTAGAAAA+GGG + chr2_4:47981269-47981288 None:intergenic 20.0%
!! TTCATTATGAATTGTAGAAA+AGG + chr2_4:47981270-47981289 None:intergenic 20.0%
! AAAAATTATTACCTTGAAGG+TGG + chr2_4:47979893-47979912 None:intergenic 25.0%
! AAAAGTTTATGCTGCAAAAA+TGG - chr2_4:47980018-47980037 Msa0331910:CDS 25.0%
! GGAAAACATGCAATAATTAA+TGG + chr2_4:47980206-47980225 None:intergenic 25.0%
! AATGAAGGGAAAAAAAACTA+TGG - chr2_4:47980441-47980460 Msa0331910:intron 25.0%
!! ATTTTCAACCAAGTGATTAT+AGG - chr2_4:47980639-47980658 Msa0331910:intron 25.0%
!! TTTTCAACCAAGTGATTATA+GGG - chr2_4:47980640-47980659 Msa0331910:intron 25.0%
! TCTCAAATTATTAACAGTGT+CGG - chr2_4:47980905-47980924 Msa0331910:intron 25.0%
! AATATTGCAAAAGATTTAGC+TGG + chr2_4:47981142-47981161 None:intergenic 25.0%
! TCATGCAATAAGACAAATAT+TGG + chr2_4:47981225-47981244 None:intergenic 25.0%
! AAAGGGAAGCAAAATATAAT+AGG + chr2_4:47981252-47981271 None:intergenic 25.0%
! TCTACAATTCATAATGAAAC+TGG - chr2_4:47981272-47981291 Msa0331910:intron 25.0%
! ATTCAAGGTTATTGTTGAAA+TGG - chr2_4:47981359-47981378 Msa0331910:intron 25.0%
!! ATAAACCTCTACAATGTTTT+TGG + chr2_4:47981427-47981446 None:intergenic 25.0%
! AAAAACATTGTAGAGGTTTA+TGG - chr2_4:47981426-47981445 Msa0331910:intron 25.0%
! TCCTCATCAAAAAAAGAAAA+TGG - chr2_4:47981452-47981471 Msa0331910:intron 25.0%
! GTAGATGTTAATGAAACAAA+TGG + chr2_4:47981852-47981871 None:intergenic 25.0%
! TTGCAGCATAAACTTTTGTT+CGG + chr2_4:47980015-47980034 None:intergenic 30.0%
! TGTTTGTTAGGTATGAAGAA+AGG - chr2_4:47980297-47980316 Msa0331910:CDS 30.0%
! GTTTGTTAGGTATGAAGAAA+GGG - chr2_4:47980298-47980317 Msa0331910:CDS 30.0%
ACTTACATTATGCAATGACA+TGG + chr2_4:47980405-47980424 None:intergenic 30.0%
! AAGTGGTATATTTTGTGTGT+TGG - chr2_4:47980492-47980511 Msa0331910:intron 30.0%
TTAGAAGATGCATAGATTAG+TGG - chr2_4:47980750-47980769 Msa0331910:CDS 30.0%
AAGATTATTCCATTGCATGT+TGG - chr2_4:47981113-47981132 Msa0331910:intron 30.0%
! GACAAATATTGGTTGATATC+TGG + chr2_4:47981214-47981233 None:intergenic 30.0%
ACAATTCATAATGAAACTGG+AGG - chr2_4:47981275-47981294 Msa0331910:intron 30.0%
AACCTGTGAAAAACATCAAT+TGG + chr2_4:47981336-47981355 None:intergenic 30.0%
! TTTTCACAGGTTTACATTCA+AGG - chr2_4:47981344-47981363 Msa0331910:intron 30.0%
AGTAACCAAAAACATTGTAG+AGG - chr2_4:47981419-47981438 Msa0331910:intron 30.0%
!!! GCCATTTTCTTTTTTTGATG+AGG + chr2_4:47981456-47981475 None:intergenic 30.0%
TTGTGGTACTTAAAGCATAT+AGG - chr2_4:47981501-47981520 Msa0331910:intron 30.0%
! CACAAAGTTATTTCATTCCT+CGG - chr2_4:47981602-47981621 Msa0331910:intron 30.0%
!!! TTTTTTGTGCGCCTATTTAA+CGG + chr2_4:47981810-47981829 None:intergenic 30.0%
GATGTTAATGAAACAAATGG+CGG + chr2_4:47981849-47981868 None:intergenic 30.0%
CAAGAAATCAGAAACAAGAT+CGG + chr2_4:47981892-47981911 None:intergenic 30.0%
!!! GCATCAATGTTTTTCAAGAC+TGG + chr2_4:47980106-47980125 None:intergenic 35.0%
TGGAAGATGAAACTGAAGAT+TGG + chr2_4:47980132-47980151 None:intergenic 35.0%
!!! TCCAAAGAGAGTGTCATTTT+AGG - chr2_4:47980148-47980167 Msa0331910:CDS 35.0%
!!! CCAAAGAGAGTGTCATTTTA+GGG - chr2_4:47980149-47980168 Msa0331910:CDS 35.0%
AAGACAACAACTTCAGATGA+AGG - chr2_4:47980172-47980191 Msa0331910:CDS 35.0%
AGACATGTGCTGTAAATCAT+TGG - chr2_4:47980343-47980362 Msa0331910:intron 35.0%
TCTTTACAACACTCAAACAC+AGG + chr2_4:47980375-47980394 None:intergenic 35.0%
! TGTGTTTGAGTGTTGTAAAG+AGG - chr2_4:47980374-47980393 Msa0331910:intron 35.0%
! TTTGAGTGTTGTAAAGAGGA+AGG - chr2_4:47980378-47980397 Msa0331910:intron 35.0%
TTATCGAACTTAAGTCACCA+AGG - chr2_4:47980605-47980624 Msa0331910:intron 35.0%
! GAAAATTTGCTCTTCAACCT+TGG + chr2_4:47980625-47980644 None:intergenic 35.0%
TCAGCTGTAGATTTCAAATC+AGG - chr2_4:47980686-47980705 Msa0331910:intron 35.0%
! GACCAATTGATGTTTTTCAC+AGG - chr2_4:47981331-47981350 Msa0331910:intron 35.0%
GTTATTGTTGAAATGGAGAC+AGG - chr2_4:47981366-47981385 Msa0331910:intron 35.0%
AAATAACTTTGTGGCAGTAG+AGG + chr2_4:47981595-47981614 None:intergenic 35.0%
CGAGGAATGAAATAACTTTG+TGG + chr2_4:47981604-47981623 None:intergenic 35.0%
TGTTTCCTTTGTTGCATTAC+TGG - chr2_4:47981764-47981783 Msa0331910:intron 35.0%
AAATGCCAGTAATGCAACAA+AGG + chr2_4:47981772-47981791 None:intergenic 35.0%
!! TCTCTACTTGTTGTATCTTC+AGG + chr2_4:47981971-47981990 None:intergenic 35.0%
AGCTTTCGTATTGTGCTTAT+TGG - chr2_4:47982107-47982126 Msa0331910:CDS 35.0%
GTTTGTATTTCAGCAACCAT+GGG + chr2_4:47982186-47982205 None:intergenic 35.0%
CATGGTTGCTGAAATACAAA+CGG - chr2_4:47982185-47982204 Msa0331910:CDS 35.0%
ATACAAAGACCATGCTTCTT+CGG + chr2_4:47982304-47982323 None:intergenic 35.0%
GAGTAGGAAGATGATAAAGT+GGG - chr2_4:47982373-47982392 Msa0331910:CDS 35.0%
CCCTAAAATGACACTCTCTT+TGG + chr2_4:47980152-47980171 None:intergenic 40.0%
TTAGGTATGAAGAAAGGGTG+TGG - chr2_4:47980303-47980322 Msa0331910:CDS 40.0%
TTACAACACTCAAACACAGG+AGG + chr2_4:47980372-47980391 None:intergenic 40.0%
CCAGTTTCCCTATAATCACT+TGG + chr2_4:47980650-47980669 None:intergenic 40.0%
CCAAGTGATTATAGGGAAAC+TGG - chr2_4:47980647-47980666 Msa0331910:intron 40.0%
TATGTGCTTGAGTGCTTCAT+AGG + chr2_4:47980791-47980810 None:intergenic 40.0%
TATATGTGTCAGTGTCGTGT+CGG + chr2_4:47980863-47980882 None:intergenic 40.0%
! GACGTTTTATGCAGGTATCT+GGG + chr2_4:47981032-47981051 None:intergenic 40.0%
GATGTTAGAGCCTAGTGTTT+CGG + chr2_4:47981061-47981080 None:intergenic 40.0%
TTGGATATCATCAACAGCCA+AGG - chr2_4:47981569-47981588 Msa0331910:intron 40.0%
AAGTCTAGATAGCATTACCG+AGG + chr2_4:47981622-47981641 None:intergenic 40.0%
TCGGTAATGCTATCTAGACT+TGG - chr2_4:47981621-47981640 Msa0331910:intron 40.0%
GAGCATGGTCTTCTGATTAT+TGG + chr2_4:47981650-47981669 None:intergenic 40.0%
ACAGATTTGGCAGGAAAAAG+AGG + chr2_4:47981684-47981703 None:intergenic 40.0%
GTGATAGCAATACAGCAAAC+AGG + chr2_4:47981716-47981735 None:intergenic 40.0%
TTGCTGTATTGCTATCACGA+AGG - chr2_4:47981718-47981737 Msa0331910:intron 40.0%
AGCACAATACGAAAGCTTCA+AGG + chr2_4:47982104-47982123 None:intergenic 40.0%
CGTTTGTATTTCAGCAACCA+TGG + chr2_4:47982187-47982206 None:intergenic 40.0%
GTACAAATCCAGCTTGAAGA+TGG - chr2_4:47982329-47982348 Msa0331910:intron 40.0%
! GCATGGTTTCTATGTCACTT+GGG - chr2_4:47982351-47982370 Msa0331910:intron 40.0%
! TTTCTATGTCACTTGGGAGT+AGG - chr2_4:47982357-47982376 Msa0331910:intron 40.0%
GGAGTAGGAAGATGATAAAG+TGG - chr2_4:47982372-47982391 Msa0331910:CDS 40.0%
AGAGCTTCTGTAACCTCATT+GGG - chr2_4:47982398-47982417 Msa0331910:CDS 40.0%
TTCTTCTCACTCCACCTTCA+AGG - chr2_4:47979879-47979898 Msa0331910:CDS 45.0%
TGAGTGCTTCATAGGTGTGT+GGG + chr2_4:47980783-47980802 None:intergenic 45.0%
TTGAGTGCTTCATAGGTGTG+TGG + chr2_4:47980784-47980803 None:intergenic 45.0%
ACTCAAGCACATACACTCCT+CGG - chr2_4:47980798-47980817 Msa0331910:CDS 45.0%
ATGAAGCACGGATATGGACA+CGG + chr2_4:47980960-47980979 None:intergenic 45.0%
TTCATAGCCACACACAGACA+CGG - chr2_4:47980975-47980994 Msa0331910:intron 45.0%
! GGACGTTTTATGCAGGTATC+TGG + chr2_4:47981033-47981052 None:intergenic 45.0%
AGCTGGATACCAACATGCAA+TGG + chr2_4:47981125-47981144 None:intergenic 45.0%
TAAGTACCACAATGCACCCT+CGG + chr2_4:47981493-47981512 None:intergenic 45.0%
TCAGAAGACCATGCTCTCTT+AGG - chr2_4:47981654-47981673 Msa0331910:intron 45.0%
AAGAGGAAGACAGATTTGGC+AGG + chr2_4:47981693-47981712 None:intergenic 45.0%
CAGGAAGAGGAAGACAGATT+TGG + chr2_4:47981697-47981716 None:intergenic 45.0%
GCAATACAGCAAACAGGAAG+AGG + chr2_4:47981710-47981729 None:intergenic 45.0%
TAGTCACGCCTCCGTTAAAT+AGG - chr2_4:47981796-47981815 Msa0331910:intron 45.0%
TTTGTGCGCCTATTTAACGG+AGG + chr2_4:47981807-47981826 None:intergenic 45.0%
CCTGCTCGTGAAATGACAAT+CGG + chr2_4:47982056-47982075 None:intergenic 45.0%
AGCTTCAAGGTCTTTCTCCA+AGG + chr2_4:47982091-47982110 None:intergenic 45.0%
ATGGACAATCCGAAGAAGCA+TGG - chr2_4:47982292-47982311 Msa0331910:intron 45.0%
AATCCAGCTTGAAGATGGCA+TGG - chr2_4:47982334-47982353 Msa0331910:intron 45.0%
AAACCATGCCATCTTCAAGC+TGG + chr2_4:47982340-47982359 None:intergenic 45.0%
GGCATGGTTTCTATGTCACT+TGG - chr2_4:47982350-47982369 Msa0331910:intron 45.0%
GAGAGCTTCTGTAACCTCAT+TGG - chr2_4:47982397-47982416 Msa0331910:CDS 45.0%
CTTCTGTAACCTCATTGGGA+AGG - chr2_4:47982402-47982421 Msa0331910:CDS 45.0%
GTAACCTCATTGGGAAGGTT+TGG - chr2_4:47982407-47982426 Msa0331910:CDS 45.0%
TTCATAGGTGTGTGGGCACT+AGG + chr2_4:47980776-47980795 None:intergenic 50.0%
GCACATACACTCCTCGGATT+AGG - chr2_4:47980804-47980823 Msa0331910:CDS 50.0%
ACGGATATGGACACGGAAAC+CGG + chr2_4:47980953-47980972 None:intergenic 50.0%
GTGGCTATGAAGCACGGATA+TGG + chr2_4:47980966-47980985 None:intergenic 50.0%
CTGTGTGTGGCTATGAAGCA+CGG + chr2_4:47980972-47980991 None:intergenic 50.0%
! GGAGTGTGGACGTTTTATGC+AGG + chr2_4:47981040-47981059 None:intergenic 50.0%
TGTCATCTTCCTTCGCTGTG+CGG - chr2_4:47981997-47982016 Msa0331910:intron 50.0%
! CCGATTGTCATTTCACGAGC+AGG - chr2_4:47982053-47982072 Msa0331910:intron 50.0%
GTCATTTCACGAGCAGGAGA+AGG - chr2_4:47982059-47982078 Msa0331910:intron 50.0%
GGCAGTTGTTGAACCAGACA+CGG + chr2_4:47982165-47982184 None:intergenic 50.0%
! TCTGGTTCAACAACTGCCCA+TGG - chr2_4:47982167-47982186 Msa0331910:CDS 50.0%
ATGATCTCAGCTGCAGTCAC+AGG - chr2_4:47982239-47982258 Msa0331910:CDS 50.0%
ATGAACCTCAACACGACCAC+CGG - chr2_4:47982268-47982287 Msa0331910:intron 50.0%
CTTCTTCGGATTGTCCATCC+CGG + chr2_4:47982290-47982309 None:intergenic 50.0%
CTCTCCAAACCTTCCCAATG+AGG + chr2_4:47982414-47982433 None:intergenic 50.0%
! TGTCAGTGTCGTGTCGGTGT+TGG + chr2_4:47980857-47980876 None:intergenic 55.0%
GTCAGTATGCGTGTCGTGTC+CGG - chr2_4:47980931-47980950 Msa0331910:intron 55.0%
AGGTATCTGGGCTTGATCCC+AGG + chr2_4:47981020-47981039 None:intergenic 55.0%
CGTCCACACTCCGAAACACT+AGG - chr2_4:47981048-47981067 Msa0331910:intron 55.0%
GAGCCTAGTGTTTCGGAGTG+TGG + chr2_4:47981054-47981073 None:intergenic 55.0%
CTTTGTGGCAGTAGAGGCCT+TGG + chr2_4:47981589-47981608 None:intergenic 55.0%
GAGGCTCTCCTAAGAGAGCA+TGG + chr2_4:47981665-47981684 None:intergenic 55.0%
GTCATCTTCCTTCGCTGTGC+GGG - chr2_4:47981998-47982017 Msa0331910:intron 55.0%
GCAGGAGAAGGAGAGTTCCT+TGG - chr2_4:47982071-47982090 Msa0331910:intron 55.0%
GGATGCGCAACACAGCATCT+CGG - chr2_4:47982206-47982225 Msa0331910:CDS 55.0%
GATGCGCAACACAGCATCTC+GGG - chr2_4:47982207-47982226 Msa0331910:CDS 55.0%
! CAACACAGCATCTCGGGTTG+CGG - chr2_4:47982213-47982232 Msa0331910:CDS 55.0%
TGAACCTCAACACGACCACC+GGG - chr2_4:47982269-47982288 Msa0331910:intron 55.0%
! ACTCCTCGGATTAGGCGTCC+CGG - chr2_4:47980812-47980831 Msa0331910:CDS 60.0%
ACACGACACCTGTCCGACAC+CGG + chr2_4:47980834-47980853 None:intergenic 60.0%
AGCCACACACAGACACGGAG+AGG - chr2_4:47980980-47980999 Msa0331910:intron 60.0%
GCCACACACAGACACGGAGA+GGG - chr2_4:47980981-47981000 Msa0331910:intron 60.0%
CCACACACAGACACGGAGAG+GGG - chr2_4:47980982-47981001 Msa0331910:intron 60.0%
CACACACAGACACGGAGAGG+GGG - chr2_4:47980983-47981002 Msa0331910:intron 60.0%
ACAGACACGGAGAGGGGGAA+GGG - chr2_4:47980988-47981007 Msa0331910:intron 60.0%
AGGGGGAAGGGTGGAAACCT+GGG - chr2_4:47981000-47981019 Msa0331910:intron 60.0%
GCAGCAGACAATGCAGCCGA+GGG - chr2_4:47981474-47981493 Msa0331910:intron 60.0%
! ATGCAGCCGAGGGTGCATTG+TGG - chr2_4:47981484-47981503 Msa0331910:intron 60.0%
CACACAATCCCGCACAGCGA+AGG + chr2_4:47982009-47982028 None:intergenic 60.0%
CCAGACACGGTGCTCATGCT+TGG + chr2_4:47982152-47982171 None:intergenic 60.0%
! CCAAGCATGAGCACCGTGTC+TGG - chr2_4:47982149-47982168 Msa0331910:CDS 60.0%
CTTCGGATTGTCCATCCCGG+TGG + chr2_4:47982287-47982306 None:intergenic 60.0%
ACACCGGGACGCCTAATCCG+AGG + chr2_4:47980818-47980837 None:intergenic 65.0%
! CGGATTAGGCGTCCCGGTGT+CGG - chr2_4:47980818-47980837 Msa0331910:CDS 65.0%
CACGACACCTGTCCGACACC+GGG + chr2_4:47980833-47980852 None:intergenic 65.0%
CCCCTCTCCGTGTCTGTGTG+TGG + chr2_4:47980985-47981004 None:intergenic 65.0%
CACAGACACGGAGAGGGGGA+AGG - chr2_4:47980987-47981006 Msa0331910:intron 65.0%
GAGGGGGAAGGGTGGAAACC+TGG - chr2_4:47980999-47981018 Msa0331910:intron 65.0%
GGCAGCAGACAATGCAGCCG+AGG - chr2_4:47981473-47981492 Msa0331910:intron 65.0%
CCATCCCGGTGGTCGTGTTG+AGG + chr2_4:47982276-47982295 None:intergenic 65.0%
CCTCAACACGACCACCGGGA+TGG - chr2_4:47982273-47982292 Msa0331910:intron 65.0%
! TAGGCGTCCCGGTGTCGGAC+AGG - chr2_4:47980823-47980842 Msa0331910:CDS 70.0%
GACACGGAGAGGGGGAAGGG+TGG - chr2_4:47980991-47981010 Msa0331910:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 47979827 47982439 47979827 ID=Msa0331910;Name=Msa0331910
chr2_4 mRNA 47979827 47982439 47979827 ID=Msa0331910-mRNA-1;Parent=Msa0331910;Name=Msa0331910-mRNA-1;_AED=0.20;_eAED=0.26;_QI=0|0.5|0.28|1|0.5|0.28|7|0|333
chr2_4 exon 47982366 47982439 47982366 ID=Msa0331910-mRNA-1:exon:14485;Parent=Msa0331910-mRNA-1
chr2_4 exon 47982073 47982260 47982073 ID=Msa0331910-mRNA-1:exon:14484;Parent=Msa0331910-mRNA-1
chr2_4 exon 47981848 47981959 47981848 ID=Msa0331910-mRNA-1:exon:14483;Parent=Msa0331910-mRNA-1
chr2_4 exon 47980744 47980913 47980744 ID=Msa0331910-mRNA-1:exon:14482;Parent=Msa0331910-mRNA-1
chr2_4 exon 47980222 47980327 47980222 ID=Msa0331910-mRNA-1:exon:14481;Parent=Msa0331910-mRNA-1
chr2_4 exon 47979953 47980191 47979953 ID=Msa0331910-mRNA-1:exon:14480;Parent=Msa0331910-mRNA-1
chr2_4 exon 47979827 47979936 47979827 ID=Msa0331910-mRNA-1:exon:14479;Parent=Msa0331910-mRNA-1
chr2_4 CDS 47982366 47982439 47982366 ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1
chr2_4 CDS 47982073 47982260 47982073 ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1
chr2_4 CDS 47981848 47981959 47981848 ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1
chr2_4 CDS 47980744 47980913 47980744 ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1
chr2_4 CDS 47980222 47980327 47980222 ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1
chr2_4 CDS 47979953 47980191 47979953 ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1
chr2_4 CDS 47979827 47979936 47979827 ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1
Gene Sequence

>Msa0331910

GAAGTCTGTTTACAGCATTATACACAATACAAAACATGGACAAGAGCAATAATTCTTCTCACTCCACCTTCAAGAGTAAACCGAACAAAAGTTTATGCTGCAAAAATGGTGAAACCCAACTTGAATAATCAAATGAAAATGGTTGAAACTGTTGAAAGCATTGTTCAAAATCCAGTCTTGAAAAACATTGATGCTGTCCAATCTTCAGTTTCATCTTCCAAAGAGAGTGTCATTTTAGGGAAGACAACAACTTCAGATGAAGGTATGAAGAAAGGGTGTGGTAGATCAAAGCTGTATGAGACATGTGCTGTAAATCATTGGAAGCCTCCTGTGTTTGAGTGTTGTAAAGAGGAAGGACCATGTCATTGCATAATGTTTACATTCAAGGTTATTGTTGAAATGGAGACAGGTAAAGCTTCTAAAAACATAAAGACAAGTGAAGTAACCAAAAACATTGTAGAGGTTTATGGTGCTCCTCATCAAAAAAAGAAAATGGCAGCAGACAATGCAGCCGAGGGTGCATTGTGGTACTTAAAGCATATAGCTGTTAGATTTCTTAGAAATGCTTTTCTTCCTGAAGATACAACAAGTAGAGATCATACTGTCATCTTCCTTCGCTGTGCGGGATTGTGTGTTTCTAGTTTCGTCAAGAGAAGGAGAGTTCCTTGGAGAAAGACCTTGAAGCTTTCGTATTGTGCTTATTGGTACTACATAGAACTTTTGTCCAAGCATGAGCACCGTGTCTGGTTCAACAACTGCCCATGGTTGCTGAAATACAAACGGATGCGCAACACAGCATCTCGGGTTGCGGCACATGATCTCAGCTGCAGTCACAGGTCTGTCATGAACCTCAACACGACCACCGGGATGGACAATCCGAAGAAGCATGTACAAATCCAGCTTGAAGATGGCATGGTTTCTATGTCACTTGGGAGTAGGAAGATGATAAAGTGGGAGAGAGCTTCTGTAACCTCATTGGGAAGGTTTGGAGAGTATAAG

Protein sequence

>Msa0331910

EVCLQHYTQYKTWTRAIILLTPPSRVNRTKVYAAKMVKPNLNNQMKMVETVESIVQNPVLKNIDAVQSSVSSSKESVILGKTTTSDEGMKKGCGRSKLYETCAVNHWKPPVFECCKEEGPCHCIMFTFKVIVEMETGKASKNIKTSEVTKNIVEVYGAPHQKKKMAADNAAEGALWYLKHIAVRFLRNAFLPEDTTSRDHTVIFLRCAGLCVSSFVKRRRVPWRKTLKLSYCAYWYYIELLSKHEHRVWFNNCPWLLKYKRMRNTASRVAAHDLSCSHRSVMNLNTTTGMDNPKKHVQIQLEDGMVSMSLGSRKMIKWERASVTSLGRFGEYK