Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0331910 | XP_024631881.1 | 91.613 | 155 | 13 | 0 | 27 | 181 | 19 | 173 | 7.96e-98 | 297 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0331910 | sp|Q9M8N2|RTL1_ARATH | 44.211 | 95 | 43 | 1 | 90 | 184 | 111 | 195 | 1.07e-15 | 77.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0331910 | A0A396JJW4 | 91.613 | 155 | 13 | 0 | 27 | 181 | 19 | 173 | 3.80e-98 | 297 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003470 | Msa0331910 | 0.811851 | 5.694064e-51 | -8.615850e-47 |
Msa0008850 | Msa0331910 | 0.806004 | 1.015173e-49 | -8.615850e-47 |
Msa0024680 | Msa0331910 | 0.835046 | 2.107948e-56 | -8.615850e-47 |
Msa0027540 | Msa0331910 | 0.832135 | 1.123469e-55 | -8.615850e-47 |
Msa0048020 | Msa0331910 | 0.813879 | 2.047326e-51 | -8.615850e-47 |
Msa0075310 | Msa0331910 | 0.822184 | 2.713088e-53 | -8.615850e-47 |
Msa0089210 | Msa0331910 | 0.802625 | 5.134300e-49 | -8.615850e-47 |
Msa0094420 | Msa0331910 | 0.829376 | 5.329754e-55 | -8.615850e-47 |
Msa0113160 | Msa0331910 | 0.802110 | 6.552545e-49 | -8.615850e-47 |
Msa0120330 | Msa0331910 | 0.835477 | 1.640183e-56 | -8.615850e-47 |
Msa0140220 | Msa0331910 | 0.807997 | 3.844873e-50 | -8.615850e-47 |
Msa0141430 | Msa0331910 | 0.808948 | 2.409786e-50 | -8.615850e-47 |
Msa0146470 | Msa0331910 | 0.803803 | 2.928888e-49 | -8.615850e-47 |
Msa0168100 | Msa0331910 | 0.824907 | 6.258241e-54 | -8.615850e-47 |
Msa0169620 | Msa0331910 | 0.813282 | 2.770160e-51 | -8.615850e-47 |
Msa0182930 | Msa0331910 | 0.800453 | 1.431317e-48 | -8.615850e-47 |
Msa0183620 | Msa0331910 | 0.806191 | 9.274002e-50 | -8.615850e-47 |
Msa0194570 | Msa0331910 | 0.806091 | 9.735939e-50 | -8.615850e-47 |
Msa0200970 | Msa0331910 | 0.813082 | 3.064913e-51 | -8.615850e-47 |
Msa0207000 | Msa0331910 | 0.811385 | 7.188060e-51 | -8.615850e-47 |
Msa0227490 | Msa0331910 | 0.807704 | 4.438285e-50 | -8.615850e-47 |
Msa0227500 | Msa0331910 | 0.824596 | 7.408889e-54 | -8.615850e-47 |
Msa0239660 | Msa0331910 | 0.810425 | 1.160383e-50 | -8.615850e-47 |
Msa0248560 | Msa0331910 | 0.819532 | 1.105183e-52 | -8.615850e-47 |
Msa0259710 | Msa0331910 | 0.952373 | 2.785497e-110 | -8.615850e-47 |
Msa0267760 | Msa0331910 | 0.801217 | 9.991421e-49 | -8.615850e-47 |
Msa0277640 | Msa0331910 | 0.802917 | 4.468209e-49 | -8.615850e-47 |
Msa0284780 | Msa0331910 | 0.829261 | 5.683342e-55 | -8.615850e-47 |
Msa0288240 | Msa0331910 | 0.804619 | 1.980064e-49 | -8.615850e-47 |
Msa0297920 | Msa0331910 | 0.809445 | 1.885537e-50 | -8.615850e-47 |
Msa0298970 | Msa0331910 | 0.834852 | 2.359053e-56 | -8.615850e-47 |
Msa0301180 | Msa0331910 | 0.826563 | 2.532801e-54 | -8.615850e-47 |
Msa0305510 | Msa0331910 | 0.956727 | 1.487933e-114 | -8.615850e-47 |
Msa0314790 | Msa0331910 | 0.811342 | 7.345732e-51 | -8.615850e-47 |
Msa0320540 | Msa0331910 | 0.820506 | 6.616813e-53 | -8.615850e-47 |
Msa0331910 | Msa0344070 | 0.809033 | 2.310910e-50 | -8.615850e-47 |
Msa0331910 | Msa0423360 | -0.825953 | 3.538389e-54 | -8.615850e-47 |
Msa0331910 | Msa0469910 | -0.829299 | 5.563134e-55 | -8.615850e-47 |
Msa0331910 | Msa0519200 | 0.800821 | 1.203741e-48 | -8.615850e-47 |
Msa0331910 | Msa0524120 | 0.815361 | 9.616243e-52 | -8.615850e-47 |
Msa0331910 | Msa0543850 | 0.803879 | 2.823969e-49 | -8.615850e-47 |
Msa0331910 | Msa0546380 | 0.806006 | 1.014066e-49 | -8.615850e-47 |
Msa0331910 | Msa0576420 | 0.801597 | 8.353829e-49 | -8.615850e-47 |
Msa0331910 | Msa0600390 | 0.808212 | 3.459820e-50 | -8.615850e-47 |
Msa0331910 | Msa0605620 | 0.800721 | 1.261805e-48 | -8.615850e-47 |
Msa0331910 | Msa0640880 | 0.800944 | 1.136536e-48 | -8.615850e-47 |
Msa0331910 | Msa0642650 | 0.815716 | 8.015899e-52 | -8.615850e-47 |
Msa0331910 | Msa0667220 | 0.809962 | 1.460166e-50 | -8.615850e-47 |
Msa0331910 | Msa0678890 | 0.812163 | 4.867421e-51 | -8.615850e-47 |
Msa0331910 | Msa0681890 | 0.817755 | 2.797954e-52 | -8.615850e-47 |
Msa0331910 | Msa0682400 | 0.800823 | 1.202896e-48 | -8.615850e-47 |
Msa0331910 | Msa0725480 | -0.807100 | 5.961706e-50 | -8.615850e-47 |
Msa0331910 | Msa0799710 | 0.800287 | 1.547092e-48 | -8.615850e-47 |
Msa0331910 | Msa0820670 | 0.817199 | 3.732351e-52 | -8.615850e-47 |
Msa0331910 | Msa0837990 | 0.810249 | 1.265900e-50 | -8.615850e-47 |
Msa0331910 | Msa0850500 | 0.800340 | 1.508850e-48 | -8.615850e-47 |
Msa0331910 | Msa0907700 | 0.813639 | 2.311660e-51 | -8.615850e-47 |
Msa0331910 | Msa0922540 | 0.809864 | 1.532177e-50 | -8.615850e-47 |
Msa0331910 | Msa0925160 | 0.809278 | 2.047665e-50 | -8.615850e-47 |
Msa0331910 | Msa0930330 | 0.806652 | 7.411925e-50 | -8.615850e-47 |
Msa0331910 | Msa0931610 | 0.825355 | 4.904325e-54 | -8.615850e-47 |
Msa0331910 | Msa0958020 | 0.806856 | 6.712996e-50 | -8.615850e-47 |
Msa0331910 | Msa0990520 | 0.836647 | 8.275959e-57 | -8.615850e-47 |
Msa0331910 | Msa1002040 | 0.804170 | 2.457020e-49 | -8.615850e-47 |
Msa0331910 | Msa1004500 | 0.804367 | 2.235443e-49 | -8.615850e-47 |
Msa0331910 | Msa1014270 | 0.820157 | 7.955228e-53 | -8.615850e-47 |
Msa0331910 | Msa1044340 | 0.819177 | 1.331716e-52 | -8.615850e-47 |
Msa0331910 | Msa1045970 | 0.800492 | 1.405421e-48 | -8.615850e-47 |
Msa0331910 | Msa1046870 | 0.806193 | 9.263414e-50 | -8.615850e-47 |
Msa0331910 | Msa1055260 | 0.803279 | 3.760254e-49 | -8.615850e-47 |
Msa0331910 | Msa1097380 | 0.804660 | 1.941275e-49 | -8.615850e-47 |
Msa0331910 | Msa1129560 | 0.818531 | 1.867259e-52 | -8.615850e-47 |
Msa0331910 | Msa1129720 | 0.801749 | 7.772793e-49 | -8.615850e-47 |
Msa0331910 | Msa1149760 | 0.810066 | 1.386177e-50 | -8.615850e-47 |
Msa0331910 | Msa1159100 | 0.814247 | 1.698103e-51 | -8.615850e-47 |
Msa0331910 | Msa1173720 | 0.869357 | 3.290412e-66 | -8.615850e-47 |
Msa0331910 | Msa1173730 | 0.852429 | 4.642932e-61 | -8.615850e-47 |
Msa0331910 | Msa1200920 | 0.803011 | 4.272377e-49 | -8.615850e-47 |
Msa0331910 | Msa1220450 | -0.835352 | 1.764407e-56 | -8.615850e-47 |
Msa0331910 | Msa1220460 | -0.830395 | 3.009262e-55 | -8.615850e-47 |
Msa0331910 | Msa1220480 | -0.829519 | 4.920129e-55 | -8.615850e-47 |
Msa0331910 | Msa1223840 | 0.812984 | 3.219028e-51 | -8.615850e-47 |
Msa0331910 | Msa1254770 | 0.804028 | 2.629606e-49 | -8.615850e-47 |
Msa0331910 | Msa1254800 | 0.807799 | 4.236058e-50 | -8.615850e-47 |
Msa0331910 | Msa1265960 | 0.820582 | 6.356784e-53 | -8.615850e-47 |
Msa0331910 | Msa1323060 | 0.808340 | 3.249425e-50 | -8.615850e-47 |
Msa0331910 | Msa1327820 | 0.803189 | 3.926289e-49 | -8.615850e-47 |
Msa0331910 | Msa1341930 | 0.805372 | 1.378273e-49 | -8.615850e-47 |
Msa0331910 | Msa1352290 | 0.835378 | 1.737163e-56 | -8.615850e-47 |
Msa0331910 | Msa1354040 | 0.819142 | 1.356663e-52 | -8.615850e-47 |
Msa0331910 | Msa1367940 | 0.808997 | 2.352279e-50 | -8.615850e-47 |
Msa0331910 | Msa1373510 | 0.803681 | 3.104612e-49 | -8.615850e-47 |
Msa0331910 | Msa1382720 | 0.800383 | 1.478681e-48 | -8.615850e-47 |
Msa0331910 | Msa1390310 | 0.808353 | 3.229706e-50 | -8.615850e-47 |
Msa0331910 | Msa1431000 | 0.824558 | 7.563477e-54 | -8.615850e-47 |
Msa0331910 | Msa1447230 | 0.806408 | 8.346985e-50 | -8.615850e-47 |
Msa0331910 | Msa1449880 | 0.800138 | 1.658582e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0331910 | MtrunA17_Chr2g0333701 | 91.613 | 155 | 13 | 0 | 27 | 181 | 19 | 173 | 7.32e-102 | 297 |
Msa0331910 | MtrunA17_Chr4g0065391 | 48.958 | 96 | 36 | 2 | 94 | 189 | 1542 | 1624 | 4.69e-16 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0331910 | AT1G80650.1 | 44.211 | 95 | 43 | 1 | 90 | 184 | 111 | 195 | 1.08e-16 | 77.8 |
Msa0331910 | AT4G00420.3 | 44.086 | 93 | 41 | 3 | 90 | 182 | 59 | 140 | 4.36e-13 | 67.0 |
Msa0331910 | AT4G00420.1 | 44.086 | 93 | 41 | 3 | 90 | 182 | 80 | 161 | 6.31e-13 | 67.0 |
Msa0331910 | AT4G00420.5 | 44.086 | 93 | 41 | 3 | 90 | 182 | 81 | 162 | 6.43e-13 | 67.0 |
Msa0331910 | AT4G00420.2 | 44.086 | 93 | 41 | 3 | 90 | 182 | 81 | 162 | 6.43e-13 | 67.0 |
Msa0331910 | AT4G00420.4 | 44.086 | 93 | 41 | 3 | 90 | 182 | 81 | 162 | 6.43e-13 | 67.0 |
Msa0331910 | AT5G20320.1 | 43.011 | 93 | 42 | 1 | 88 | 180 | 1616 | 1697 | 8.77e-12 | 67.0 |
Msa0331910 | AT5G20320.3 | 43.011 | 93 | 42 | 1 | 88 | 180 | 1391 | 1472 | 9.40e-12 | 66.6 |
Msa0331910 | AT5G20320.2 | 43.011 | 93 | 42 | 1 | 88 | 180 | 1602 | 1683 | 9.42e-12 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTTCGTATTGTGCTTAT+TGG | 0.272521 | 2_4:-47980137 | Msa0331910:CDS |
CCCTAAAATGACACTCTCTT+TGG | 0.292490 | 2_4:+47982095 | None:intergenic |
CTTGAATAATCAAATGAAAA+TGG | 0.300650 | 2_4:-47982193 | Msa0331910:CDS |
ATTCAAGGTTATTGTTGAAA+TGG | 0.336999 | 2_4:-47980885 | Msa0331910:CDS |
GTAACCTCATTGGGAAGGTT+TGG | 0.344366 | 2_4:-47979837 | Msa0331910:CDS |
TCTCTACTTGTTGTATCTTC+AGG | 0.376832 | 2_4:+47980276 | None:intergenic |
TTCATTTGATTATTCAAGTT+GGG | 0.380029 | 2_4:+47982198 | None:intergenic |
TTCTTCTCACTCCACCTTCA+AGG | 0.388623 | 2_4:-47982365 | Msa0331910:intron |
GTCATCTTCCTTCGCTGTGC+GGG | 0.407572 | 2_4:-47980246 | Msa0331910:CDS |
ATACAAAGACCATGCTTCTT+CGG | 0.412757 | 2_4:+47979943 | None:intergenic |
AGAGCTTCTGTAACCTCATT+GGG | 0.434018 | 2_4:-47979846 | Msa0331910:CDS |
GAGAGCTTCTGTAACCTCAT+TGG | 0.438525 | 2_4:-47979847 | Msa0331910:CDS |
CCAAGCATGAGCACCGTGTC+TGG | 0.442539 | 2_4:-47980095 | Msa0331910:CDS |
TGTTTGTTAGGTATGAAGAA+AGG | 0.445413 | 2_4:-47981947 | Msa0331910:intron |
TTGTGGTACTTAAAGCATAT+AGG | 0.446945 | 2_4:-47980743 | Msa0331910:intron |
GTTTGTTAGGTATGAAGAAA+GGG | 0.447288 | 2_4:-47981946 | Msa0331910:intron |
TTTCATTTGATTATTCAAGT+TGG | 0.449161 | 2_4:+47982197 | None:intergenic |
TGGAAGATGAAACTGAAGAT+TGG | 0.449737 | 2_4:+47982115 | None:intergenic |
GGAGTAGGAAGATGATAAAG+TGG | 0.460554 | 2_4:-47979872 | Msa0331910:CDS |
CCAGACACGGTGCTCATGCT+TGG | 0.470917 | 2_4:+47980095 | None:intergenic |
GCAGGAGAAGGAGAGTTCCT+TGG | 0.474726 | 2_4:-47980173 | Msa0331910:intron |
GTTATTGTTGAAATGGAGAC+AGG | 0.475716 | 2_4:-47980878 | Msa0331910:CDS |
GGCATGGTTTCTATGTCACT+TGG | 0.494818 | 2_4:-47979894 | Msa0331910:CDS |
ATGAACCTCAACACGACCAC+CGG | 0.503765 | 2_4:-47979976 | Msa0331910:CDS |
AGACATGTGCTGTAAATCAT+TGG | 0.504933 | 2_4:-47981901 | Msa0331910:CDS |
GATGCGCAACACAGCATCTC+GGG | 0.506782 | 2_4:-47980037 | Msa0331910:CDS |
AGCACAATACGAAAGCTTCA+AGG | 0.507043 | 2_4:+47980143 | None:intergenic |
TTTCTATGTCACTTGGGAGT+AGG | 0.509889 | 2_4:-47979887 | Msa0331910:CDS |
CAACACAGCATCTCGGGTTG+CGG | 0.523737 | 2_4:-47980031 | Msa0331910:CDS |
CCATCCCGGTGGTCGTGTTG+AGG | 0.534868 | 2_4:+47979971 | None:intergenic |
CGTTTGTATTTCAGCAACCA+TGG | 0.536086 | 2_4:+47980060 | None:intergenic |
GAGTAGGAAGATGATAAAGT+GGG | 0.541740 | 2_4:-47979871 | Msa0331910:CDS |
AAACCATGCCATCTTCAAGC+TGG | 0.543658 | 2_4:+47979907 | None:intergenic |
GTACAAATCCAGCTTGAAGA+TGG | 0.545136 | 2_4:-47979915 | Msa0331910:CDS |
GGCAGCAGACAATGCAGCCG+AGG | 0.547846 | 2_4:-47980771 | Msa0331910:CDS |
AGCTTCAAGGTCTTTCTCCA+AGG | 0.548141 | 2_4:+47980156 | None:intergenic |
TAAGTACCACAATGCACCCT+CGG | 0.553491 | 2_4:+47980754 | None:intergenic |
AAGACAACAACTTCAGATGA+AGG | 0.557587 | 2_4:-47982072 | Msa0331910:intron |
TTAGGTATGAAGAAAGGGTG+TGG | 0.557962 | 2_4:-47981941 | Msa0331910:intron |
TGTGTTTGAGTGTTGTAAAG+AGG | 0.558213 | 2_4:-47981870 | Msa0331910:CDS |
GCAGCAGACAATGCAGCCGA+GGG | 0.565055 | 2_4:-47980770 | Msa0331910:CDS |
CTTCTTCGGATTGTCCATCC+CGG | 0.566311 | 2_4:+47979957 | None:intergenic |
GCATGGTTTCTATGTCACTT+GGG | 0.566543 | 2_4:-47979893 | Msa0331910:CDS |
ATGATCTCAGCTGCAGTCAC+AGG | 0.566923 | 2_4:-47980005 | Msa0331910:CDS |
TCTTTACAACACTCAAACAC+AGG | 0.578805 | 2_4:+47981872 | None:intergenic |
CTTCTGTAACCTCATTGGGA+AGG | 0.579543 | 2_4:-47979842 | Msa0331910:CDS |
CCTCAACACGACCACCGGGA+TGG | 0.580543 | 2_4:-47979971 | Msa0331910:CDS |
GGATGCGCAACACAGCATCT+CGG | 0.580572 | 2_4:-47980038 | Msa0331910:CDS |
CACACAATCCCGCACAGCGA+AGG | 0.581547 | 2_4:+47980238 | None:intergenic |
TGTCATCTTCCTTCGCTGTG+CGG | 0.586769 | 2_4:-47980247 | Msa0331910:CDS |
CTCTCCAAACCTTCCCAATG+AGG | 0.592938 | 2_4:+47979833 | None:intergenic |
AATCCAGCTTGAAGATGGCA+TGG | 0.595774 | 2_4:-47979910 | Msa0331910:CDS |
GTTTGTATTTCAGCAACCAT+GGG | 0.600791 | 2_4:+47980061 | None:intergenic |
TGAACCTCAACACGACCACC+GGG | 0.601755 | 2_4:-47979975 | Msa0331910:CDS |
CATGGTTGCTGAAATACAAA+CGG | 0.602757 | 2_4:-47980059 | Msa0331910:CDS |
ATGGACAATCCGAAGAAGCA+TGG | 0.615251 | 2_4:-47979952 | Msa0331910:intron |
TCTGGTTCAACAACTGCCCA+TGG | 0.636749 | 2_4:-47980077 | Msa0331910:CDS |
ATTATACACAATACAAAACA+TGG | 0.645969 | 2_4:-47982401 | Msa0331910:CDS |
TTTGAGTGTTGTAAAGAGGA+AGG | 0.648639 | 2_4:-47981866 | Msa0331910:CDS |
GGCAGTTGTTGAACCAGACA+CGG | 0.650306 | 2_4:+47980082 | None:intergenic |
TTACAACACTCAAACACAGG+AGG | 0.658087 | 2_4:+47981875 | None:intergenic |
ACTTACATTATGCAATGACA+TGG | 0.673466 | 2_4:+47981842 | None:intergenic |
ATGCAGCCGAGGGTGCATTG+TGG | 0.682343 | 2_4:-47980760 | Msa0331910:CDS |
CTTCGGATTGTCCATCCCGG+TGG | 0.692959 | 2_4:+47979960 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAATTAAAATAAATAAT+TGG | - | chr2_4:47979925-47979944 | Msa0331910:intron | 0.0% |
!! | TTTAATTAAAATAAATAATT+GGG | - | chr2_4:47979926-47979945 | Msa0331910:intron | 0.0% |
!!! | AAAATTTTTTTTTTTTAAAT+TGG | - | chr2_4:47979956-47979975 | Msa0331910:CDS | 0.0% |
!!! | TTTTTATTTATGAAAAATGA+AGG | - | chr2_4:47980426-47980445 | Msa0331910:intron | 10.0% |
!!! | TTTTATTTATGAAAAATGAA+GGG | - | chr2_4:47980427-47980446 | Msa0331910:intron | 10.0% |
!! | AAAAAAAATTATTACCTTGA+AGG | + | chr2_4:47979896-47979915 | None:intergenic | 15.0% |
!!! | ACAAAAAAAATGAACTTTTT+TGG | + | chr2_4:47980227-47980246 | None:intergenic | 15.0% |
!! | AGTACAAATTATTGTATTAT+TGG | - | chr2_4:47981550-47981569 | Msa0331910:intron | 15.0% |
!! | ATTATACACAATACAAAACA+TGG | - | chr2_4:47979843-47979862 | Msa0331910:CDS | 20.0% |
!!! | TTCATTTGATTATTCAAGTT+GGG | + | chr2_4:47980049-47980068 | None:intergenic | 20.0% |
!! | TTTCATTTGATTATTCAAGT+TGG | + | chr2_4:47980050-47980069 | None:intergenic | 20.0% |
!! | CTTGAATAATCAAATGAAAA+TGG | - | chr2_4:47980051-47980070 | Msa0331910:CDS | 20.0% |
!!! | AATGAGAAAAATGAGTATTT+TGG | - | chr2_4:47980268-47980287 | Msa0331910:CDS | 20.0% |
!!! | TTTTGGTATTATTGTTTGTT+AGG | - | chr2_4:47980285-47980304 | Msa0331910:CDS | 20.0% |
!!! | GAAATGAAATTTTCTATAAG+TGG | - | chr2_4:47980475-47980494 | Msa0331910:intron | 20.0% |
!! | ATATAAACAACTTACAACTT+AGG | - | chr2_4:47980716-47980735 | Msa0331910:intron | 20.0% |
!! | TCATTATGAATTGTAGAAAA+GGG | + | chr2_4:47981269-47981288 | None:intergenic | 20.0% |
!! | TTCATTATGAATTGTAGAAA+AGG | + | chr2_4:47981270-47981289 | None:intergenic | 20.0% |
! | AAAAATTATTACCTTGAAGG+TGG | + | chr2_4:47979893-47979912 | None:intergenic | 25.0% |
! | AAAAGTTTATGCTGCAAAAA+TGG | - | chr2_4:47980018-47980037 | Msa0331910:CDS | 25.0% |
! | GGAAAACATGCAATAATTAA+TGG | + | chr2_4:47980206-47980225 | None:intergenic | 25.0% |
! | AATGAAGGGAAAAAAAACTA+TGG | - | chr2_4:47980441-47980460 | Msa0331910:intron | 25.0% |
!! | ATTTTCAACCAAGTGATTAT+AGG | - | chr2_4:47980639-47980658 | Msa0331910:intron | 25.0% |
!! | TTTTCAACCAAGTGATTATA+GGG | - | chr2_4:47980640-47980659 | Msa0331910:intron | 25.0% |
! | TCTCAAATTATTAACAGTGT+CGG | - | chr2_4:47980905-47980924 | Msa0331910:intron | 25.0% |
! | AATATTGCAAAAGATTTAGC+TGG | + | chr2_4:47981142-47981161 | None:intergenic | 25.0% |
! | TCATGCAATAAGACAAATAT+TGG | + | chr2_4:47981225-47981244 | None:intergenic | 25.0% |
! | AAAGGGAAGCAAAATATAAT+AGG | + | chr2_4:47981252-47981271 | None:intergenic | 25.0% |
! | TCTACAATTCATAATGAAAC+TGG | - | chr2_4:47981272-47981291 | Msa0331910:intron | 25.0% |
! | ATTCAAGGTTATTGTTGAAA+TGG | - | chr2_4:47981359-47981378 | Msa0331910:intron | 25.0% |
!! | ATAAACCTCTACAATGTTTT+TGG | + | chr2_4:47981427-47981446 | None:intergenic | 25.0% |
! | AAAAACATTGTAGAGGTTTA+TGG | - | chr2_4:47981426-47981445 | Msa0331910:intron | 25.0% |
! | TCCTCATCAAAAAAAGAAAA+TGG | - | chr2_4:47981452-47981471 | Msa0331910:intron | 25.0% |
! | GTAGATGTTAATGAAACAAA+TGG | + | chr2_4:47981852-47981871 | None:intergenic | 25.0% |
! | TTGCAGCATAAACTTTTGTT+CGG | + | chr2_4:47980015-47980034 | None:intergenic | 30.0% |
! | TGTTTGTTAGGTATGAAGAA+AGG | - | chr2_4:47980297-47980316 | Msa0331910:CDS | 30.0% |
! | GTTTGTTAGGTATGAAGAAA+GGG | - | chr2_4:47980298-47980317 | Msa0331910:CDS | 30.0% |
ACTTACATTATGCAATGACA+TGG | + | chr2_4:47980405-47980424 | None:intergenic | 30.0% | |
! | AAGTGGTATATTTTGTGTGT+TGG | - | chr2_4:47980492-47980511 | Msa0331910:intron | 30.0% |
TTAGAAGATGCATAGATTAG+TGG | - | chr2_4:47980750-47980769 | Msa0331910:CDS | 30.0% | |
AAGATTATTCCATTGCATGT+TGG | - | chr2_4:47981113-47981132 | Msa0331910:intron | 30.0% | |
! | GACAAATATTGGTTGATATC+TGG | + | chr2_4:47981214-47981233 | None:intergenic | 30.0% |
ACAATTCATAATGAAACTGG+AGG | - | chr2_4:47981275-47981294 | Msa0331910:intron | 30.0% | |
AACCTGTGAAAAACATCAAT+TGG | + | chr2_4:47981336-47981355 | None:intergenic | 30.0% | |
! | TTTTCACAGGTTTACATTCA+AGG | - | chr2_4:47981344-47981363 | Msa0331910:intron | 30.0% |
AGTAACCAAAAACATTGTAG+AGG | - | chr2_4:47981419-47981438 | Msa0331910:intron | 30.0% | |
!!! | GCCATTTTCTTTTTTTGATG+AGG | + | chr2_4:47981456-47981475 | None:intergenic | 30.0% |
TTGTGGTACTTAAAGCATAT+AGG | - | chr2_4:47981501-47981520 | Msa0331910:intron | 30.0% | |
! | CACAAAGTTATTTCATTCCT+CGG | - | chr2_4:47981602-47981621 | Msa0331910:intron | 30.0% |
!!! | TTTTTTGTGCGCCTATTTAA+CGG | + | chr2_4:47981810-47981829 | None:intergenic | 30.0% |
GATGTTAATGAAACAAATGG+CGG | + | chr2_4:47981849-47981868 | None:intergenic | 30.0% | |
CAAGAAATCAGAAACAAGAT+CGG | + | chr2_4:47981892-47981911 | None:intergenic | 30.0% | |
!!! | GCATCAATGTTTTTCAAGAC+TGG | + | chr2_4:47980106-47980125 | None:intergenic | 35.0% |
TGGAAGATGAAACTGAAGAT+TGG | + | chr2_4:47980132-47980151 | None:intergenic | 35.0% | |
!!! | TCCAAAGAGAGTGTCATTTT+AGG | - | chr2_4:47980148-47980167 | Msa0331910:CDS | 35.0% |
!!! | CCAAAGAGAGTGTCATTTTA+GGG | - | chr2_4:47980149-47980168 | Msa0331910:CDS | 35.0% |
AAGACAACAACTTCAGATGA+AGG | - | chr2_4:47980172-47980191 | Msa0331910:CDS | 35.0% | |
AGACATGTGCTGTAAATCAT+TGG | - | chr2_4:47980343-47980362 | Msa0331910:intron | 35.0% | |
TCTTTACAACACTCAAACAC+AGG | + | chr2_4:47980375-47980394 | None:intergenic | 35.0% | |
! | TGTGTTTGAGTGTTGTAAAG+AGG | - | chr2_4:47980374-47980393 | Msa0331910:intron | 35.0% |
! | TTTGAGTGTTGTAAAGAGGA+AGG | - | chr2_4:47980378-47980397 | Msa0331910:intron | 35.0% |
TTATCGAACTTAAGTCACCA+AGG | - | chr2_4:47980605-47980624 | Msa0331910:intron | 35.0% | |
! | GAAAATTTGCTCTTCAACCT+TGG | + | chr2_4:47980625-47980644 | None:intergenic | 35.0% |
TCAGCTGTAGATTTCAAATC+AGG | - | chr2_4:47980686-47980705 | Msa0331910:intron | 35.0% | |
! | GACCAATTGATGTTTTTCAC+AGG | - | chr2_4:47981331-47981350 | Msa0331910:intron | 35.0% |
GTTATTGTTGAAATGGAGAC+AGG | - | chr2_4:47981366-47981385 | Msa0331910:intron | 35.0% | |
AAATAACTTTGTGGCAGTAG+AGG | + | chr2_4:47981595-47981614 | None:intergenic | 35.0% | |
CGAGGAATGAAATAACTTTG+TGG | + | chr2_4:47981604-47981623 | None:intergenic | 35.0% | |
TGTTTCCTTTGTTGCATTAC+TGG | - | chr2_4:47981764-47981783 | Msa0331910:intron | 35.0% | |
AAATGCCAGTAATGCAACAA+AGG | + | chr2_4:47981772-47981791 | None:intergenic | 35.0% | |
!! | TCTCTACTTGTTGTATCTTC+AGG | + | chr2_4:47981971-47981990 | None:intergenic | 35.0% |
AGCTTTCGTATTGTGCTTAT+TGG | - | chr2_4:47982107-47982126 | Msa0331910:CDS | 35.0% | |
GTTTGTATTTCAGCAACCAT+GGG | + | chr2_4:47982186-47982205 | None:intergenic | 35.0% | |
CATGGTTGCTGAAATACAAA+CGG | - | chr2_4:47982185-47982204 | Msa0331910:CDS | 35.0% | |
ATACAAAGACCATGCTTCTT+CGG | + | chr2_4:47982304-47982323 | None:intergenic | 35.0% | |
GAGTAGGAAGATGATAAAGT+GGG | - | chr2_4:47982373-47982392 | Msa0331910:CDS | 35.0% | |
CCCTAAAATGACACTCTCTT+TGG | + | chr2_4:47980152-47980171 | None:intergenic | 40.0% | |
TTAGGTATGAAGAAAGGGTG+TGG | - | chr2_4:47980303-47980322 | Msa0331910:CDS | 40.0% | |
TTACAACACTCAAACACAGG+AGG | + | chr2_4:47980372-47980391 | None:intergenic | 40.0% | |
CCAGTTTCCCTATAATCACT+TGG | + | chr2_4:47980650-47980669 | None:intergenic | 40.0% | |
CCAAGTGATTATAGGGAAAC+TGG | - | chr2_4:47980647-47980666 | Msa0331910:intron | 40.0% | |
TATGTGCTTGAGTGCTTCAT+AGG | + | chr2_4:47980791-47980810 | None:intergenic | 40.0% | |
TATATGTGTCAGTGTCGTGT+CGG | + | chr2_4:47980863-47980882 | None:intergenic | 40.0% | |
! | GACGTTTTATGCAGGTATCT+GGG | + | chr2_4:47981032-47981051 | None:intergenic | 40.0% |
GATGTTAGAGCCTAGTGTTT+CGG | + | chr2_4:47981061-47981080 | None:intergenic | 40.0% | |
TTGGATATCATCAACAGCCA+AGG | - | chr2_4:47981569-47981588 | Msa0331910:intron | 40.0% | |
AAGTCTAGATAGCATTACCG+AGG | + | chr2_4:47981622-47981641 | None:intergenic | 40.0% | |
TCGGTAATGCTATCTAGACT+TGG | - | chr2_4:47981621-47981640 | Msa0331910:intron | 40.0% | |
GAGCATGGTCTTCTGATTAT+TGG | + | chr2_4:47981650-47981669 | None:intergenic | 40.0% | |
ACAGATTTGGCAGGAAAAAG+AGG | + | chr2_4:47981684-47981703 | None:intergenic | 40.0% | |
GTGATAGCAATACAGCAAAC+AGG | + | chr2_4:47981716-47981735 | None:intergenic | 40.0% | |
TTGCTGTATTGCTATCACGA+AGG | - | chr2_4:47981718-47981737 | Msa0331910:intron | 40.0% | |
AGCACAATACGAAAGCTTCA+AGG | + | chr2_4:47982104-47982123 | None:intergenic | 40.0% | |
CGTTTGTATTTCAGCAACCA+TGG | + | chr2_4:47982187-47982206 | None:intergenic | 40.0% | |
GTACAAATCCAGCTTGAAGA+TGG | - | chr2_4:47982329-47982348 | Msa0331910:intron | 40.0% | |
! | GCATGGTTTCTATGTCACTT+GGG | - | chr2_4:47982351-47982370 | Msa0331910:intron | 40.0% |
! | TTTCTATGTCACTTGGGAGT+AGG | - | chr2_4:47982357-47982376 | Msa0331910:intron | 40.0% |
GGAGTAGGAAGATGATAAAG+TGG | - | chr2_4:47982372-47982391 | Msa0331910:CDS | 40.0% | |
AGAGCTTCTGTAACCTCATT+GGG | - | chr2_4:47982398-47982417 | Msa0331910:CDS | 40.0% | |
TTCTTCTCACTCCACCTTCA+AGG | - | chr2_4:47979879-47979898 | Msa0331910:CDS | 45.0% | |
TGAGTGCTTCATAGGTGTGT+GGG | + | chr2_4:47980783-47980802 | None:intergenic | 45.0% | |
TTGAGTGCTTCATAGGTGTG+TGG | + | chr2_4:47980784-47980803 | None:intergenic | 45.0% | |
ACTCAAGCACATACACTCCT+CGG | - | chr2_4:47980798-47980817 | Msa0331910:CDS | 45.0% | |
ATGAAGCACGGATATGGACA+CGG | + | chr2_4:47980960-47980979 | None:intergenic | 45.0% | |
TTCATAGCCACACACAGACA+CGG | - | chr2_4:47980975-47980994 | Msa0331910:intron | 45.0% | |
! | GGACGTTTTATGCAGGTATC+TGG | + | chr2_4:47981033-47981052 | None:intergenic | 45.0% |
AGCTGGATACCAACATGCAA+TGG | + | chr2_4:47981125-47981144 | None:intergenic | 45.0% | |
TAAGTACCACAATGCACCCT+CGG | + | chr2_4:47981493-47981512 | None:intergenic | 45.0% | |
TCAGAAGACCATGCTCTCTT+AGG | - | chr2_4:47981654-47981673 | Msa0331910:intron | 45.0% | |
AAGAGGAAGACAGATTTGGC+AGG | + | chr2_4:47981693-47981712 | None:intergenic | 45.0% | |
CAGGAAGAGGAAGACAGATT+TGG | + | chr2_4:47981697-47981716 | None:intergenic | 45.0% | |
GCAATACAGCAAACAGGAAG+AGG | + | chr2_4:47981710-47981729 | None:intergenic | 45.0% | |
TAGTCACGCCTCCGTTAAAT+AGG | - | chr2_4:47981796-47981815 | Msa0331910:intron | 45.0% | |
TTTGTGCGCCTATTTAACGG+AGG | + | chr2_4:47981807-47981826 | None:intergenic | 45.0% | |
CCTGCTCGTGAAATGACAAT+CGG | + | chr2_4:47982056-47982075 | None:intergenic | 45.0% | |
AGCTTCAAGGTCTTTCTCCA+AGG | + | chr2_4:47982091-47982110 | None:intergenic | 45.0% | |
ATGGACAATCCGAAGAAGCA+TGG | - | chr2_4:47982292-47982311 | Msa0331910:intron | 45.0% | |
AATCCAGCTTGAAGATGGCA+TGG | - | chr2_4:47982334-47982353 | Msa0331910:intron | 45.0% | |
AAACCATGCCATCTTCAAGC+TGG | + | chr2_4:47982340-47982359 | None:intergenic | 45.0% | |
GGCATGGTTTCTATGTCACT+TGG | - | chr2_4:47982350-47982369 | Msa0331910:intron | 45.0% | |
GAGAGCTTCTGTAACCTCAT+TGG | - | chr2_4:47982397-47982416 | Msa0331910:CDS | 45.0% | |
CTTCTGTAACCTCATTGGGA+AGG | - | chr2_4:47982402-47982421 | Msa0331910:CDS | 45.0% | |
GTAACCTCATTGGGAAGGTT+TGG | - | chr2_4:47982407-47982426 | Msa0331910:CDS | 45.0% | |
TTCATAGGTGTGTGGGCACT+AGG | + | chr2_4:47980776-47980795 | None:intergenic | 50.0% | |
GCACATACACTCCTCGGATT+AGG | - | chr2_4:47980804-47980823 | Msa0331910:CDS | 50.0% | |
ACGGATATGGACACGGAAAC+CGG | + | chr2_4:47980953-47980972 | None:intergenic | 50.0% | |
GTGGCTATGAAGCACGGATA+TGG | + | chr2_4:47980966-47980985 | None:intergenic | 50.0% | |
CTGTGTGTGGCTATGAAGCA+CGG | + | chr2_4:47980972-47980991 | None:intergenic | 50.0% | |
! | GGAGTGTGGACGTTTTATGC+AGG | + | chr2_4:47981040-47981059 | None:intergenic | 50.0% |
TGTCATCTTCCTTCGCTGTG+CGG | - | chr2_4:47981997-47982016 | Msa0331910:intron | 50.0% | |
! | CCGATTGTCATTTCACGAGC+AGG | - | chr2_4:47982053-47982072 | Msa0331910:intron | 50.0% |
GTCATTTCACGAGCAGGAGA+AGG | - | chr2_4:47982059-47982078 | Msa0331910:intron | 50.0% | |
GGCAGTTGTTGAACCAGACA+CGG | + | chr2_4:47982165-47982184 | None:intergenic | 50.0% | |
! | TCTGGTTCAACAACTGCCCA+TGG | - | chr2_4:47982167-47982186 | Msa0331910:CDS | 50.0% |
ATGATCTCAGCTGCAGTCAC+AGG | - | chr2_4:47982239-47982258 | Msa0331910:CDS | 50.0% | |
ATGAACCTCAACACGACCAC+CGG | - | chr2_4:47982268-47982287 | Msa0331910:intron | 50.0% | |
CTTCTTCGGATTGTCCATCC+CGG | + | chr2_4:47982290-47982309 | None:intergenic | 50.0% | |
CTCTCCAAACCTTCCCAATG+AGG | + | chr2_4:47982414-47982433 | None:intergenic | 50.0% | |
! | TGTCAGTGTCGTGTCGGTGT+TGG | + | chr2_4:47980857-47980876 | None:intergenic | 55.0% |
GTCAGTATGCGTGTCGTGTC+CGG | - | chr2_4:47980931-47980950 | Msa0331910:intron | 55.0% | |
AGGTATCTGGGCTTGATCCC+AGG | + | chr2_4:47981020-47981039 | None:intergenic | 55.0% | |
CGTCCACACTCCGAAACACT+AGG | - | chr2_4:47981048-47981067 | Msa0331910:intron | 55.0% | |
GAGCCTAGTGTTTCGGAGTG+TGG | + | chr2_4:47981054-47981073 | None:intergenic | 55.0% | |
CTTTGTGGCAGTAGAGGCCT+TGG | + | chr2_4:47981589-47981608 | None:intergenic | 55.0% | |
GAGGCTCTCCTAAGAGAGCA+TGG | + | chr2_4:47981665-47981684 | None:intergenic | 55.0% | |
GTCATCTTCCTTCGCTGTGC+GGG | - | chr2_4:47981998-47982017 | Msa0331910:intron | 55.0% | |
GCAGGAGAAGGAGAGTTCCT+TGG | - | chr2_4:47982071-47982090 | Msa0331910:intron | 55.0% | |
GGATGCGCAACACAGCATCT+CGG | - | chr2_4:47982206-47982225 | Msa0331910:CDS | 55.0% | |
GATGCGCAACACAGCATCTC+GGG | - | chr2_4:47982207-47982226 | Msa0331910:CDS | 55.0% | |
! | CAACACAGCATCTCGGGTTG+CGG | - | chr2_4:47982213-47982232 | Msa0331910:CDS | 55.0% |
TGAACCTCAACACGACCACC+GGG | - | chr2_4:47982269-47982288 | Msa0331910:intron | 55.0% | |
! | ACTCCTCGGATTAGGCGTCC+CGG | - | chr2_4:47980812-47980831 | Msa0331910:CDS | 60.0% |
ACACGACACCTGTCCGACAC+CGG | + | chr2_4:47980834-47980853 | None:intergenic | 60.0% | |
AGCCACACACAGACACGGAG+AGG | - | chr2_4:47980980-47980999 | Msa0331910:intron | 60.0% | |
GCCACACACAGACACGGAGA+GGG | - | chr2_4:47980981-47981000 | Msa0331910:intron | 60.0% | |
CCACACACAGACACGGAGAG+GGG | - | chr2_4:47980982-47981001 | Msa0331910:intron | 60.0% | |
CACACACAGACACGGAGAGG+GGG | - | chr2_4:47980983-47981002 | Msa0331910:intron | 60.0% | |
ACAGACACGGAGAGGGGGAA+GGG | - | chr2_4:47980988-47981007 | Msa0331910:intron | 60.0% | |
AGGGGGAAGGGTGGAAACCT+GGG | - | chr2_4:47981000-47981019 | Msa0331910:intron | 60.0% | |
GCAGCAGACAATGCAGCCGA+GGG | - | chr2_4:47981474-47981493 | Msa0331910:intron | 60.0% | |
! | ATGCAGCCGAGGGTGCATTG+TGG | - | chr2_4:47981484-47981503 | Msa0331910:intron | 60.0% |
CACACAATCCCGCACAGCGA+AGG | + | chr2_4:47982009-47982028 | None:intergenic | 60.0% | |
CCAGACACGGTGCTCATGCT+TGG | + | chr2_4:47982152-47982171 | None:intergenic | 60.0% | |
! | CCAAGCATGAGCACCGTGTC+TGG | - | chr2_4:47982149-47982168 | Msa0331910:CDS | 60.0% |
CTTCGGATTGTCCATCCCGG+TGG | + | chr2_4:47982287-47982306 | None:intergenic | 60.0% | |
ACACCGGGACGCCTAATCCG+AGG | + | chr2_4:47980818-47980837 | None:intergenic | 65.0% | |
! | CGGATTAGGCGTCCCGGTGT+CGG | - | chr2_4:47980818-47980837 | Msa0331910:CDS | 65.0% |
CACGACACCTGTCCGACACC+GGG | + | chr2_4:47980833-47980852 | None:intergenic | 65.0% | |
CCCCTCTCCGTGTCTGTGTG+TGG | + | chr2_4:47980985-47981004 | None:intergenic | 65.0% | |
CACAGACACGGAGAGGGGGA+AGG | - | chr2_4:47980987-47981006 | Msa0331910:intron | 65.0% | |
GAGGGGGAAGGGTGGAAACC+TGG | - | chr2_4:47980999-47981018 | Msa0331910:intron | 65.0% | |
GGCAGCAGACAATGCAGCCG+AGG | - | chr2_4:47981473-47981492 | Msa0331910:intron | 65.0% | |
CCATCCCGGTGGTCGTGTTG+AGG | + | chr2_4:47982276-47982295 | None:intergenic | 65.0% | |
CCTCAACACGACCACCGGGA+TGG | - | chr2_4:47982273-47982292 | Msa0331910:intron | 65.0% | |
! | TAGGCGTCCCGGTGTCGGAC+AGG | - | chr2_4:47980823-47980842 | Msa0331910:CDS | 70.0% |
GACACGGAGAGGGGGAAGGG+TGG | - | chr2_4:47980991-47981010 | Msa0331910:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 47979827 | 47982439 | 47979827 | ID=Msa0331910;Name=Msa0331910 |
chr2_4 | mRNA | 47979827 | 47982439 | 47979827 | ID=Msa0331910-mRNA-1;Parent=Msa0331910;Name=Msa0331910-mRNA-1;_AED=0.20;_eAED=0.26;_QI=0|0.5|0.28|1|0.5|0.28|7|0|333 |
chr2_4 | exon | 47982366 | 47982439 | 47982366 | ID=Msa0331910-mRNA-1:exon:14485;Parent=Msa0331910-mRNA-1 |
chr2_4 | exon | 47982073 | 47982260 | 47982073 | ID=Msa0331910-mRNA-1:exon:14484;Parent=Msa0331910-mRNA-1 |
chr2_4 | exon | 47981848 | 47981959 | 47981848 | ID=Msa0331910-mRNA-1:exon:14483;Parent=Msa0331910-mRNA-1 |
chr2_4 | exon | 47980744 | 47980913 | 47980744 | ID=Msa0331910-mRNA-1:exon:14482;Parent=Msa0331910-mRNA-1 |
chr2_4 | exon | 47980222 | 47980327 | 47980222 | ID=Msa0331910-mRNA-1:exon:14481;Parent=Msa0331910-mRNA-1 |
chr2_4 | exon | 47979953 | 47980191 | 47979953 | ID=Msa0331910-mRNA-1:exon:14480;Parent=Msa0331910-mRNA-1 |
chr2_4 | exon | 47979827 | 47979936 | 47979827 | ID=Msa0331910-mRNA-1:exon:14479;Parent=Msa0331910-mRNA-1 |
chr2_4 | CDS | 47982366 | 47982439 | 47982366 | ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1 |
chr2_4 | CDS | 47982073 | 47982260 | 47982073 | ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1 |
chr2_4 | CDS | 47981848 | 47981959 | 47981848 | ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1 |
chr2_4 | CDS | 47980744 | 47980913 | 47980744 | ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1 |
chr2_4 | CDS | 47980222 | 47980327 | 47980222 | ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1 |
chr2_4 | CDS | 47979953 | 47980191 | 47979953 | ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1 |
chr2_4 | CDS | 47979827 | 47979936 | 47979827 | ID=Msa0331910-mRNA-1:cds;Parent=Msa0331910-mRNA-1 |
Gene Sequence |
Protein sequence |