Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305510 | XP_024631881.1 | 91.613 | 155 | 13 | 0 | 28 | 182 | 19 | 173 | 9.30e-98 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305510 | sp|Q9M8N2|RTL1_ARATH | 44.211 | 95 | 43 | 1 | 91 | 185 | 111 | 195 | 1.01e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305510 | A0A396JJW4 | 91.613 | 155 | 13 | 0 | 28 | 182 | 19 | 173 | 4.44e-98 | 296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0305510 | 0.805484 | 1.305623e-49 | -8.615850e-47 |
| Msa0094420 | Msa0305510 | 0.812095 | 5.038166e-51 | -8.615850e-47 |
| Msa0146470 | Msa0305510 | 0.802920 | 4.461469e-49 | -8.615850e-47 |
| Msa0259710 | Msa0305510 | 0.971812 | 9.352142e-134 | -8.615850e-47 |
| Msa0284780 | Msa0305510 | 0.806343 | 8.613562e-50 | -8.615850e-47 |
| Msa0298970 | Msa0305510 | 0.806732 | 7.129338e-50 | -8.615850e-47 |
| Msa0305510 | Msa0320540 | 0.804299 | 2.309132e-49 | -8.615850e-47 |
| Msa0305510 | Msa0331910 | 0.956727 | 1.487933e-114 | -8.615850e-47 |
| Msa0305510 | Msa0519200 | 0.801090 | 1.060982e-48 | -8.615850e-47 |
| Msa0305510 | Msa0600390 | 0.809811 | 1.573701e-50 | -8.615850e-47 |
| Msa0305510 | Msa0640880 | 0.805727 | 1.160850e-49 | -8.615850e-47 |
| Msa0305510 | Msa0642650 | 0.800530 | 1.380351e-48 | -8.615850e-47 |
| Msa0305510 | Msa0667220 | 0.806833 | 6.788791e-50 | -8.615850e-47 |
| Msa0305510 | Msa0799710 | 0.801044 | 1.084170e-48 | -8.615850e-47 |
| Msa0305510 | Msa0931610 | 0.804486 | 2.110755e-49 | -8.615850e-47 |
| Msa0305510 | Msa0990520 | 0.807947 | 3.939661e-50 | -8.615850e-47 |
| Msa0305510 | Msa1004500 | 0.801026 | 1.093516e-48 | -8.615850e-47 |
| Msa0305510 | Msa1046870 | 0.803574 | 3.267133e-49 | -8.615850e-47 |
| Msa0305510 | Msa1129560 | 0.804201 | 2.420030e-49 | -8.615850e-47 |
| Msa0305510 | Msa1149760 | 0.803739 | 3.018495e-49 | -8.615850e-47 |
| Msa0305510 | Msa1173720 | 0.899377 | 2.104617e-77 | -8.615850e-47 |
| Msa0305510 | Msa1173730 | 0.890230 | 1.188327e-73 | -8.615850e-47 |
| Msa0305510 | Msa1220450 | -0.816834 | 4.507373e-52 | -8.615850e-47 |
| Msa0305510 | Msa1220460 | -0.810747 | 9.884887e-51 | -8.615850e-47 |
| Msa0305510 | Msa1220480 | -0.810000 | 1.432919e-50 | -8.615850e-47 |
| Msa0305510 | Msa1352290 | 0.830410 | 2.982611e-55 | -8.615850e-47 |
| Msa0305510 | Msa1354040 | 0.808133 | 3.596575e-50 | -8.615850e-47 |
| Msa0305510 | Msa1431000 | 0.800275 | 1.555568e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305510 | MtrunA17_Chr2g0333701 | 91.613 | 155 | 13 | 0 | 28 | 182 | 19 | 173 | 8.55e-102 | 296 |
| Msa0305510 | MtrunA17_Chr4g0065391 | 48.958 | 96 | 36 | 2 | 95 | 190 | 1542 | 1624 | 4.42e-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305510 | AT1G80650.1 | 44.211 | 95 | 43 | 1 | 91 | 185 | 111 | 195 | 1.02e-16 | 77.8 |
| Msa0305510 | AT4G00420.3 | 44.086 | 93 | 41 | 3 | 91 | 183 | 59 | 140 | 3.94e-13 | 67.0 |
| Msa0305510 | AT4G00420.1 | 44.086 | 93 | 41 | 3 | 91 | 183 | 80 | 161 | 5.82e-13 | 67.0 |
| Msa0305510 | AT4G00420.5 | 44.086 | 93 | 41 | 3 | 91 | 183 | 81 | 162 | 5.93e-13 | 67.0 |
| Msa0305510 | AT4G00420.2 | 44.086 | 93 | 41 | 3 | 91 | 183 | 81 | 162 | 5.93e-13 | 67.0 |
| Msa0305510 | AT4G00420.4 | 44.086 | 93 | 41 | 3 | 91 | 183 | 81 | 162 | 5.93e-13 | 67.0 |
| Msa0305510 | AT5G20320.1 | 43.011 | 93 | 42 | 1 | 89 | 181 | 1616 | 1697 | 8.95e-12 | 67.0 |
| Msa0305510 | AT5G20320.3 | 43.011 | 93 | 42 | 1 | 89 | 181 | 1391 | 1472 | 9.25e-12 | 66.6 |
| Msa0305510 | AT5G20320.2 | 43.011 | 93 | 42 | 1 | 89 | 181 | 1602 | 1683 | 9.27e-12 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTCGTATTGTGCTTAT+TGG | 0.272521 | 2_3:-63242634 | Msa0305510:CDS |
| CCCTAAAATGACACTCTCTT+TGG | 0.292490 | 2_3:+63244592 | None:intergenic |
| CTTGAATAATCAAATGAAAA+TGG | 0.300650 | 2_3:-63244690 | Msa0305510:CDS |
| ATTCAAGGTTATTGTTGAAA+TGG | 0.336999 | 2_3:-63243382 | Msa0305510:CDS |
| GTAACCTCATTGGGAAGGTT+TGG | 0.344366 | 2_3:-63242334 | Msa0305510:CDS |
| TCTCTACTTGTTGTATCTTC+AGG | 0.376832 | 2_3:+63242773 | None:intergenic |
| TTCATTTGATTATTCAAGTT+GGG | 0.380029 | 2_3:+63244695 | None:intergenic |
| TTCTTCTCACTCCACCTTCA+AGG | 0.388623 | 2_3:-63244865 | Msa0305510:intron |
| GTCATCTTCCTTCGCTGTGC+GGG | 0.407572 | 2_3:-63242743 | Msa0305510:CDS |
| ATACAAAGACCATGCTTCTT+CGG | 0.412757 | 2_3:+63242440 | None:intergenic |
| AGAGCTTCTGTAACCTCATT+GGG | 0.434018 | 2_3:-63242343 | Msa0305510:CDS |
| GAGAGCTTCTGTAACCTCAT+TGG | 0.438525 | 2_3:-63242344 | Msa0305510:CDS |
| CCAAGCATGAGCACCGTGTC+TGG | 0.442539 | 2_3:-63242592 | Msa0305510:CDS |
| TGTTTGTTAGGTATGAAGAA+AGG | 0.445413 | 2_3:-63244444 | Msa0305510:intron |
| TTGTGGTACTTAAAGCATAT+AGG | 0.446945 | 2_3:-63243240 | Msa0305510:intron |
| GTTTGTTAGGTATGAAGAAA+GGG | 0.447288 | 2_3:-63244443 | Msa0305510:intron |
| TTTCATTTGATTATTCAAGT+TGG | 0.449161 | 2_3:+63244694 | None:intergenic |
| TGGAAGATGAAACTGAAGAT+TGG | 0.449737 | 2_3:+63244612 | None:intergenic |
| GGAGTAGGAAGATGATAAAG+TGG | 0.460554 | 2_3:-63242369 | Msa0305510:CDS |
| CCAGACACGGTGCTCATGCT+TGG | 0.470917 | 2_3:+63242592 | None:intergenic |
| GCAGGAGAAGGAGAGTTCCT+TGG | 0.474726 | 2_3:-63242670 | Msa0305510:intron |
| GTTATTGTTGAAATGGAGAC+AGG | 0.475716 | 2_3:-63243375 | Msa0305510:CDS |
| GGCATGGTTTCTATGTCACT+TGG | 0.494818 | 2_3:-63242391 | Msa0305510:CDS |
| ATGAACCTCAACACGACCAC+CGG | 0.503765 | 2_3:-63242473 | Msa0305510:CDS |
| AGACATGTGCTGTAAATCAT+TGG | 0.504933 | 2_3:-63244398 | Msa0305510:CDS |
| GATGCGCAACACAGCATCTC+GGG | 0.506782 | 2_3:-63242534 | Msa0305510:CDS |
| AGCACAATACGAAAGCTTCA+AGG | 0.507043 | 2_3:+63242640 | None:intergenic |
| TTTCTATGTCACTTGGGAGT+AGG | 0.509889 | 2_3:-63242384 | Msa0305510:CDS |
| CAACACAGCATCTCGGGTTG+CGG | 0.523737 | 2_3:-63242528 | Msa0305510:CDS |
| CCATCCCGGTGGTCGTGTTG+AGG | 0.534868 | 2_3:+63242468 | None:intergenic |
| CGTTTGTATTTCAGCAACCA+TGG | 0.536086 | 2_3:+63242557 | None:intergenic |
| GAGTAGGAAGATGATAAAGT+GGG | 0.541740 | 2_3:-63242368 | Msa0305510:CDS |
| AAACCATGCCATCTTCAAGC+TGG | 0.543658 | 2_3:+63242404 | None:intergenic |
| GTACAAATCCAGCTTGAAGA+TGG | 0.545136 | 2_3:-63242412 | Msa0305510:CDS |
| GGCAGCAGACAATGCAGCCG+AGG | 0.547846 | 2_3:-63243268 | Msa0305510:CDS |
| AGCTTCAAGGTCTTTCTCCA+AGG | 0.548141 | 2_3:+63242653 | None:intergenic |
| TAAGTACCACAATGCACCCT+CGG | 0.553491 | 2_3:+63243251 | None:intergenic |
| AAGACAACAACTTCAGATGA+AGG | 0.557587 | 2_3:-63244569 | Msa0305510:intron |
| TTAGGTATGAAGAAAGGGTG+TGG | 0.557962 | 2_3:-63244438 | Msa0305510:intron |
| TGTGTTTGAGTGTTGTAAAG+AGG | 0.558213 | 2_3:-63244367 | Msa0305510:CDS |
| GCAGCAGACAATGCAGCCGA+GGG | 0.565055 | 2_3:-63243267 | Msa0305510:CDS |
| CTTCTTCGGATTGTCCATCC+CGG | 0.566311 | 2_3:+63242454 | None:intergenic |
| GCATGGTTTCTATGTCACTT+GGG | 0.566543 | 2_3:-63242390 | Msa0305510:CDS |
| ATGATCTCAGCTGCAGTCAC+AGG | 0.566923 | 2_3:-63242502 | Msa0305510:CDS |
| TCTTTACAACACTCAAACAC+AGG | 0.578805 | 2_3:+63244369 | None:intergenic |
| CTTCTGTAACCTCATTGGGA+AGG | 0.579543 | 2_3:-63242339 | Msa0305510:CDS |
| CCTCAACACGACCACCGGGA+TGG | 0.580543 | 2_3:-63242468 | Msa0305510:CDS |
| GGATGCGCAACACAGCATCT+CGG | 0.580572 | 2_3:-63242535 | Msa0305510:CDS |
| CACACAATCCCGCACAGCGA+AGG | 0.581547 | 2_3:+63242735 | None:intergenic |
| TGTCATCTTCCTTCGCTGTG+CGG | 0.586769 | 2_3:-63242744 | Msa0305510:CDS |
| CTCTCCAAACCTTCCCAATG+AGG | 0.592938 | 2_3:+63242330 | None:intergenic |
| AATCCAGCTTGAAGATGGCA+TGG | 0.595774 | 2_3:-63242407 | Msa0305510:CDS |
| GTTTGTATTTCAGCAACCAT+GGG | 0.600791 | 2_3:+63242558 | None:intergenic |
| TGAACCTCAACACGACCACC+GGG | 0.601755 | 2_3:-63242472 | Msa0305510:CDS |
| CATGGTTGCTGAAATACAAA+CGG | 0.602757 | 2_3:-63242556 | Msa0305510:CDS |
| ATGGACAATCCGAAGAAGCA+TGG | 0.615251 | 2_3:-63242449 | Msa0305510:intron |
| ATCATACACAATACAAAACA+TGG | 0.634806 | 2_3:-63244901 | Msa0305510:CDS |
| TCTGGTTCAACAACTGCCCA+TGG | 0.636749 | 2_3:-63242574 | Msa0305510:CDS |
| TTTGAGTGTTGTAAAGAGGA+AGG | 0.648639 | 2_3:-63244363 | Msa0305510:CDS |
| GGCAGTTGTTGAACCAGACA+CGG | 0.650306 | 2_3:+63242579 | None:intergenic |
| TTACAACACTCAAACACAGG+AGG | 0.658087 | 2_3:+63244372 | None:intergenic |
| ACTTACATTATGCAATGACA+TGG | 0.673466 | 2_3:+63244339 | None:intergenic |
| ATGCAGCCGAGGGTGCATTG+TGG | 0.682343 | 2_3:-63243257 | Msa0305510:CDS |
| CTTCGGATTGTCCATCCCGG+TGG | 0.692959 | 2_3:+63242457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTAAAATAAATAAT+TGG | - | chr2_3:63242425-63242444 | Msa0305510:intron | 0.0% |
| !! | TTTAATTAAAATAAATAATT+GGG | - | chr2_3:63242426-63242445 | Msa0305510:intron | 0.0% |
| !!! | TTTTTATTTATGAAAAATGA+AGG | - | chr2_3:63242929-63242948 | Msa0305510:intron | 10.0% |
| !!! | TTTTATTTATGAAAAATGAA+GGG | - | chr2_3:63242930-63242949 | Msa0305510:intron | 10.0% |
| !! | AAAAAAAATTATTACCTTGA+AGG | + | chr2_3:63242396-63242415 | None:intergenic | 15.0% |
| !!! | ACAAAAAAAATGAACTTTTT+TGG | + | chr2_3:63242730-63242749 | None:intergenic | 15.0% |
| !! | AGTACAAATTATTGTATTAT+TGG | - | chr2_3:63244053-63244072 | Msa0305510:intron | 15.0% |
| !!! | TTCATTTGATTATTCAAGTT+GGG | + | chr2_3:63242552-63242571 | None:intergenic | 20.0% |
| !! | TTTCATTTGATTATTCAAGT+TGG | + | chr2_3:63242553-63242572 | None:intergenic | 20.0% |
| !! | CTTGAATAATCAAATGAAAA+TGG | - | chr2_3:63242554-63242573 | Msa0305510:CDS | 20.0% |
| !!! | AATGAGAAAAATGAGTATTT+TGG | - | chr2_3:63242771-63242790 | Msa0305510:CDS | 20.0% |
| !!! | TTTTGGTATTATTGTTTGTT+AGG | - | chr2_3:63242788-63242807 | Msa0305510:CDS | 20.0% |
| !!! | GAAATGAAATTTTCTATAAG+TGG | - | chr2_3:63242978-63242997 | Msa0305510:intron | 20.0% |
| !! | ATATAAACAACTTACAACTT+AGG | - | chr2_3:63243219-63243238 | Msa0305510:intron | 20.0% |
| !! | TCATTATGAATTGTAGAAAA+GGG | + | chr2_3:63243772-63243791 | None:intergenic | 20.0% |
| !! | TTCATTATGAATTGTAGAAA+AGG | + | chr2_3:63243773-63243792 | None:intergenic | 20.0% |
| ! | ATCATACACAATACAAAACA+TGG | - | chr2_3:63242343-63242362 | Msa0305510:CDS | 25.0% |
| ! | AAAAATTATTACCTTGAAGG+TGG | + | chr2_3:63242393-63242412 | None:intergenic | 25.0% |
| ! | AAAAGTTTATGCTGCAAAAA+TGG | - | chr2_3:63242521-63242540 | Msa0305510:CDS | 25.0% |
| ! | GGAAAACATGCAATAATTAA+TGG | + | chr2_3:63242709-63242728 | None:intergenic | 25.0% |
| ! | AATGAAGGGAAAAAAAACTA+TGG | - | chr2_3:63242944-63242963 | Msa0305510:intron | 25.0% |
| !! | ATTTTCAACCAAGTGATTAT+AGG | - | chr2_3:63243142-63243161 | Msa0305510:intron | 25.0% |
| !! | TTTTCAACCAAGTGATTATA+GGG | - | chr2_3:63243143-63243162 | Msa0305510:intron | 25.0% |
| ! | TCTCAAATTATTAACAGTGT+CGG | - | chr2_3:63243408-63243427 | Msa0305510:intron | 25.0% |
| ! | AATATTGCAAAAGATTTAGC+TGG | + | chr2_3:63243645-63243664 | None:intergenic | 25.0% |
| ! | TCATGCAATAAGACAAATAT+TGG | + | chr2_3:63243728-63243747 | None:intergenic | 25.0% |
| ! | AAAGGGAAGCAAAATATAAT+AGG | + | chr2_3:63243755-63243774 | None:intergenic | 25.0% |
| ! | ACAATTCATAATGAAACTTG+AGG | - | chr2_3:63243778-63243797 | Msa0305510:intron | 25.0% |
| ! | ATTCAAGGTTATTGTTGAAA+TGG | - | chr2_3:63243862-63243881 | Msa0305510:intron | 25.0% |
| !! | ATAAACCTCTACAATGTTTT+TGG | + | chr2_3:63243930-63243949 | None:intergenic | 25.0% |
| ! | AAAAACATTGTAGAGGTTTA+TGG | - | chr2_3:63243929-63243948 | Msa0305510:intron | 25.0% |
| ! | TCCTCATCAAAAAAAGAAAA+TGG | - | chr2_3:63243955-63243974 | Msa0305510:intron | 25.0% |
| ! | GTAGATGTTAATGAAACAAA+TGG | + | chr2_3:63244355-63244374 | None:intergenic | 25.0% |
| ! | TTGCAGCATAAACTTTTGTT+CGG | + | chr2_3:63242518-63242537 | None:intergenic | 30.0% |
| ! | TGTTTGTTAGGTATGAAGAA+AGG | - | chr2_3:63242800-63242819 | Msa0305510:CDS | 30.0% |
| ! | GTTTGTTAGGTATGAAGAAA+GGG | - | chr2_3:63242801-63242820 | Msa0305510:CDS | 30.0% |
| ACTTACATTATGCAATGACA+TGG | + | chr2_3:63242908-63242927 | None:intergenic | 30.0% | |
| ! | AAGTGGTATATTTTGTGTGT+TGG | - | chr2_3:63242995-63243014 | Msa0305510:intron | 30.0% |
| TTAGAAGATGCATAGATTAG+TGG | - | chr2_3:63243253-63243272 | Msa0305510:CDS | 30.0% | |
| AAGATTATTCCATTGCATGT+TGG | - | chr2_3:63243616-63243635 | Msa0305510:intron | 30.0% | |
| ! | GACAAATATTGGTTGATATC+TGG | + | chr2_3:63243717-63243736 | None:intergenic | 30.0% |
| AACCTGTGAAAAACATCAAT+TGG | + | chr2_3:63243839-63243858 | None:intergenic | 30.0% | |
| ! | TTTTCACAGGTTTACATTCA+AGG | - | chr2_3:63243847-63243866 | Msa0305510:intron | 30.0% |
| AGTAACCAAAAACATTGTAG+AGG | - | chr2_3:63243922-63243941 | Msa0305510:intron | 30.0% | |
| !!! | GCCATTTTCTTTTTTTGATG+AGG | + | chr2_3:63243959-63243978 | None:intergenic | 30.0% |
| TTGTGGTACTTAAAGCATAT+AGG | - | chr2_3:63244004-63244023 | Msa0305510:intron | 30.0% | |
| ! | CACAAAGTTATTTCATTCCT+CGG | - | chr2_3:63244105-63244124 | Msa0305510:intron | 30.0% |
| !!! | TTTTTTGTGCGCCTATTTAA+CGG | + | chr2_3:63244313-63244332 | None:intergenic | 30.0% |
| GATGTTAATGAAACAAATGG+CGG | + | chr2_3:63244352-63244371 | None:intergenic | 30.0% | |
| CAAGAAATCAGAAACAAGAT+CGG | + | chr2_3:63244395-63244414 | None:intergenic | 30.0% | |
| !!! | GCATCAATGTTTTTCAAGAC+TGG | + | chr2_3:63242609-63242628 | None:intergenic | 35.0% |
| TGGAAGATGAAACTGAAGAT+TGG | + | chr2_3:63242635-63242654 | None:intergenic | 35.0% | |
| !!! | TCCAAAGAGAGTGTCATTTT+AGG | - | chr2_3:63242651-63242670 | Msa0305510:CDS | 35.0% |
| !!! | CCAAAGAGAGTGTCATTTTA+GGG | - | chr2_3:63242652-63242671 | Msa0305510:CDS | 35.0% |
| AAGACAACAACTTCAGATGA+AGG | - | chr2_3:63242675-63242694 | Msa0305510:intron | 35.0% | |
| AGACATGTGCTGTAAATCAT+TGG | - | chr2_3:63242846-63242865 | Msa0305510:intron | 35.0% | |
| TCTTTACAACACTCAAACAC+AGG | + | chr2_3:63242878-63242897 | None:intergenic | 35.0% | |
| ! | TGTGTTTGAGTGTTGTAAAG+AGG | - | chr2_3:63242877-63242896 | Msa0305510:intron | 35.0% |
| ! | TTTGAGTGTTGTAAAGAGGA+AGG | - | chr2_3:63242881-63242900 | Msa0305510:intron | 35.0% |
| TTATCGAACTTAAGTCACCA+AGG | - | chr2_3:63243108-63243127 | Msa0305510:intron | 35.0% | |
| ! | GAAAATTTGCTCTTCAACCT+TGG | + | chr2_3:63243128-63243147 | None:intergenic | 35.0% |
| TCAGCTGTAGATTTCAAATC+AGG | - | chr2_3:63243189-63243208 | Msa0305510:intron | 35.0% | |
| ! | GACCAATTGATGTTTTTCAC+AGG | - | chr2_3:63243834-63243853 | Msa0305510:intron | 35.0% |
| GTTATTGTTGAAATGGAGAC+AGG | - | chr2_3:63243869-63243888 | Msa0305510:intron | 35.0% | |
| AAATAACTTTGTGGCAGTAG+AGG | + | chr2_3:63244098-63244117 | None:intergenic | 35.0% | |
| CGAGGAATGAAATAACTTTG+TGG | + | chr2_3:63244107-63244126 | None:intergenic | 35.0% | |
| TGTTTCCTTTGTTGCATTAC+TGG | - | chr2_3:63244267-63244286 | Msa0305510:intron | 35.0% | |
| AAATGCCAGTAATGCAACAA+AGG | + | chr2_3:63244275-63244294 | None:intergenic | 35.0% | |
| !! | TCTCTACTTGTTGTATCTTC+AGG | + | chr2_3:63244474-63244493 | None:intergenic | 35.0% |
| AGCTTTCGTATTGTGCTTAT+TGG | - | chr2_3:63244610-63244629 | Msa0305510:CDS | 35.0% | |
| GTTTGTATTTCAGCAACCAT+GGG | + | chr2_3:63244689-63244708 | None:intergenic | 35.0% | |
| CATGGTTGCTGAAATACAAA+CGG | - | chr2_3:63244688-63244707 | Msa0305510:CDS | 35.0% | |
| ATACAAAGACCATGCTTCTT+CGG | + | chr2_3:63244807-63244826 | None:intergenic | 35.0% | |
| GAGTAGGAAGATGATAAAGT+GGG | - | chr2_3:63244876-63244895 | Msa0305510:CDS | 35.0% | |
| CCCTAAAATGACACTCTCTT+TGG | + | chr2_3:63242655-63242674 | None:intergenic | 40.0% | |
| TTAGGTATGAAGAAAGGGTG+TGG | - | chr2_3:63242806-63242825 | Msa0305510:intron | 40.0% | |
| TTACAACACTCAAACACAGG+AGG | + | chr2_3:63242875-63242894 | None:intergenic | 40.0% | |
| CCAGTTTCCCTATAATCACT+TGG | + | chr2_3:63243153-63243172 | None:intergenic | 40.0% | |
| CCAAGTGATTATAGGGAAAC+TGG | - | chr2_3:63243150-63243169 | Msa0305510:intron | 40.0% | |
| TATGTGCTTGAGTGCTTCAT+AGG | + | chr2_3:63243294-63243313 | None:intergenic | 40.0% | |
| TATATGTGTCAGTGTCGTGT+CGG | + | chr2_3:63243366-63243385 | None:intergenic | 40.0% | |
| ! | GACGTTTTATGCAGGTATCT+GGG | + | chr2_3:63243535-63243554 | None:intergenic | 40.0% |
| GATGTTAGAGCCTAGTGTTT+CGG | + | chr2_3:63243564-63243583 | None:intergenic | 40.0% | |
| TTGGATATCATCAACAGCCA+AGG | - | chr2_3:63244072-63244091 | Msa0305510:intron | 40.0% | |
| AAGTCTAGATAGCATTACCG+AGG | + | chr2_3:63244125-63244144 | None:intergenic | 40.0% | |
| TCGGTAATGCTATCTAGACT+TGG | - | chr2_3:63244124-63244143 | Msa0305510:intron | 40.0% | |
| GAGCATGGTCTTCTGATTAT+TGG | + | chr2_3:63244153-63244172 | None:intergenic | 40.0% | |
| ACAGATTTGGCAGGAAAAAG+AGG | + | chr2_3:63244187-63244206 | None:intergenic | 40.0% | |
| GTGATAGCAATACAGCAAAC+AGG | + | chr2_3:63244219-63244238 | None:intergenic | 40.0% | |
| TTGCTGTATTGCTATCACGA+AGG | - | chr2_3:63244221-63244240 | Msa0305510:intron | 40.0% | |
| AGCACAATACGAAAGCTTCA+AGG | + | chr2_3:63244607-63244626 | None:intergenic | 40.0% | |
| CGTTTGTATTTCAGCAACCA+TGG | + | chr2_3:63244690-63244709 | None:intergenic | 40.0% | |
| GTACAAATCCAGCTTGAAGA+TGG | - | chr2_3:63244832-63244851 | Msa0305510:intron | 40.0% | |
| ! | GCATGGTTTCTATGTCACTT+GGG | - | chr2_3:63244854-63244873 | Msa0305510:intron | 40.0% |
| ! | TTTCTATGTCACTTGGGAGT+AGG | - | chr2_3:63244860-63244879 | Msa0305510:intron | 40.0% |
| GGAGTAGGAAGATGATAAAG+TGG | - | chr2_3:63244875-63244894 | Msa0305510:CDS | 40.0% | |
| AGAGCTTCTGTAACCTCATT+GGG | - | chr2_3:63244901-63244920 | Msa0305510:CDS | 40.0% | |
| TTCTTCTCACTCCACCTTCA+AGG | - | chr2_3:63242379-63242398 | Msa0305510:CDS | 45.0% | |
| TGAGTGCTTCATAGGTGTGT+GGG | + | chr2_3:63243286-63243305 | None:intergenic | 45.0% | |
| TTGAGTGCTTCATAGGTGTG+TGG | + | chr2_3:63243287-63243306 | None:intergenic | 45.0% | |
| ACTCAAGCACATACACTCCT+CGG | - | chr2_3:63243301-63243320 | Msa0305510:CDS | 45.0% | |
| ATGAAGCACGGATATGGACA+CGG | + | chr2_3:63243463-63243482 | None:intergenic | 45.0% | |
| TTCATAGCCACACACAGACA+CGG | - | chr2_3:63243478-63243497 | Msa0305510:intron | 45.0% | |
| ! | GGACGTTTTATGCAGGTATC+TGG | + | chr2_3:63243536-63243555 | None:intergenic | 45.0% |
| AGCTGGATACCAACATGCAA+TGG | + | chr2_3:63243628-63243647 | None:intergenic | 45.0% | |
| TAAGTACCACAATGCACCCT+CGG | + | chr2_3:63243996-63244015 | None:intergenic | 45.0% | |
| TCAGAAGACCATGCTCTCTT+AGG | - | chr2_3:63244157-63244176 | Msa0305510:intron | 45.0% | |
| AAGAGGAAGACAGATTTGGC+AGG | + | chr2_3:63244196-63244215 | None:intergenic | 45.0% | |
| CAGGAAGAGGAAGACAGATT+TGG | + | chr2_3:63244200-63244219 | None:intergenic | 45.0% | |
| GCAATACAGCAAACAGGAAG+AGG | + | chr2_3:63244213-63244232 | None:intergenic | 45.0% | |
| TAGTCACGCCTCCGTTAAAT+AGG | - | chr2_3:63244299-63244318 | Msa0305510:intron | 45.0% | |
| TTTGTGCGCCTATTTAACGG+AGG | + | chr2_3:63244310-63244329 | None:intergenic | 45.0% | |
| CCTGCTCGTGAAATGACAAT+CGG | + | chr2_3:63244559-63244578 | None:intergenic | 45.0% | |
| AGCTTCAAGGTCTTTCTCCA+AGG | + | chr2_3:63244594-63244613 | None:intergenic | 45.0% | |
| ATGGACAATCCGAAGAAGCA+TGG | - | chr2_3:63244795-63244814 | Msa0305510:intron | 45.0% | |
| AATCCAGCTTGAAGATGGCA+TGG | - | chr2_3:63244837-63244856 | Msa0305510:intron | 45.0% | |
| AAACCATGCCATCTTCAAGC+TGG | + | chr2_3:63244843-63244862 | None:intergenic | 45.0% | |
| GGCATGGTTTCTATGTCACT+TGG | - | chr2_3:63244853-63244872 | Msa0305510:intron | 45.0% | |
| GAGAGCTTCTGTAACCTCAT+TGG | - | chr2_3:63244900-63244919 | Msa0305510:CDS | 45.0% | |
| CTTCTGTAACCTCATTGGGA+AGG | - | chr2_3:63244905-63244924 | Msa0305510:CDS | 45.0% | |
| GTAACCTCATTGGGAAGGTT+TGG | - | chr2_3:63244910-63244929 | Msa0305510:CDS | 45.0% | |
| !!! | ATTGTTTTTTTTTTTAAAAT+TGG | - | chr2_3:63242459-63242478 | Msa0305510:CDS | 5.0% |
| TTCATAGGTGTGTGGGCACT+AGG | + | chr2_3:63243279-63243298 | None:intergenic | 50.0% | |
| GCACATACACTCCTCGGATT+AGG | - | chr2_3:63243307-63243326 | Msa0305510:CDS | 50.0% | |
| ACGGATATGGACACGGAAAC+CGG | + | chr2_3:63243456-63243475 | None:intergenic | 50.0% | |
| GTGGCTATGAAGCACGGATA+TGG | + | chr2_3:63243469-63243488 | None:intergenic | 50.0% | |
| CTGTGTGTGGCTATGAAGCA+CGG | + | chr2_3:63243475-63243494 | None:intergenic | 50.0% | |
| ! | GGAGTGTGGACGTTTTATGC+AGG | + | chr2_3:63243543-63243562 | None:intergenic | 50.0% |
| TGTCATCTTCCTTCGCTGTG+CGG | - | chr2_3:63244500-63244519 | Msa0305510:intron | 50.0% | |
| ! | CCGATTGTCATTTCACGAGC+AGG | - | chr2_3:63244556-63244575 | Msa0305510:intron | 50.0% |
| GTCATTTCACGAGCAGGAGA+AGG | - | chr2_3:63244562-63244581 | Msa0305510:intron | 50.0% | |
| GGCAGTTGTTGAACCAGACA+CGG | + | chr2_3:63244668-63244687 | None:intergenic | 50.0% | |
| ! | TCTGGTTCAACAACTGCCCA+TGG | - | chr2_3:63244670-63244689 | Msa0305510:CDS | 50.0% |
| ATGATCTCAGCTGCAGTCAC+AGG | - | chr2_3:63244742-63244761 | Msa0305510:intron | 50.0% | |
| ATGAACCTCAACACGACCAC+CGG | - | chr2_3:63244771-63244790 | Msa0305510:intron | 50.0% | |
| CTTCTTCGGATTGTCCATCC+CGG | + | chr2_3:63244793-63244812 | None:intergenic | 50.0% | |
| CTCTCCAAACCTTCCCAATG+AGG | + | chr2_3:63244917-63244936 | None:intergenic | 50.0% | |
| ! | TGTCAGTGTCGTGTCGGTGT+TGG | + | chr2_3:63243360-63243379 | None:intergenic | 55.0% |
| GTCAGTATGCGTGTCGTGTC+CGG | - | chr2_3:63243434-63243453 | Msa0305510:intron | 55.0% | |
| AGGTATCTGGGCTTGATCCC+AGG | + | chr2_3:63243523-63243542 | None:intergenic | 55.0% | |
| CGTCCACACTCCGAAACACT+AGG | - | chr2_3:63243551-63243570 | Msa0305510:intron | 55.0% | |
| GAGCCTAGTGTTTCGGAGTG+TGG | + | chr2_3:63243557-63243576 | None:intergenic | 55.0% | |
| CTTTGTGGCAGTAGAGGCCT+TGG | + | chr2_3:63244092-63244111 | None:intergenic | 55.0% | |
| GAGGCTCTCCTAAGAGAGCA+TGG | + | chr2_3:63244168-63244187 | None:intergenic | 55.0% | |
| GTCATCTTCCTTCGCTGTGC+GGG | - | chr2_3:63244501-63244520 | Msa0305510:intron | 55.0% | |
| GCAGGAGAAGGAGAGTTCCT+TGG | - | chr2_3:63244574-63244593 | Msa0305510:CDS | 55.0% | |
| GGATGCGCAACACAGCATCT+CGG | - | chr2_3:63244709-63244728 | Msa0305510:CDS | 55.0% | |
| GATGCGCAACACAGCATCTC+GGG | - | chr2_3:63244710-63244729 | Msa0305510:CDS | 55.0% | |
| ! | CAACACAGCATCTCGGGTTG+CGG | - | chr2_3:63244716-63244735 | Msa0305510:CDS | 55.0% |
| TGAACCTCAACACGACCACC+GGG | - | chr2_3:63244772-63244791 | Msa0305510:intron | 55.0% | |
| ! | ACTCCTCGGATTAGGCGTCC+CGG | - | chr2_3:63243315-63243334 | Msa0305510:CDS | 60.0% |
| ACACGACACCTGTCCGACAC+CGG | + | chr2_3:63243337-63243356 | None:intergenic | 60.0% | |
| AGCCACACACAGACACGGAG+AGG | - | chr2_3:63243483-63243502 | Msa0305510:intron | 60.0% | |
| GCCACACACAGACACGGAGA+GGG | - | chr2_3:63243484-63243503 | Msa0305510:intron | 60.0% | |
| CCACACACAGACACGGAGAG+GGG | - | chr2_3:63243485-63243504 | Msa0305510:intron | 60.0% | |
| CACACACAGACACGGAGAGG+GGG | - | chr2_3:63243486-63243505 | Msa0305510:intron | 60.0% | |
| ACAGACACGGAGAGGGGGAA+GGG | - | chr2_3:63243491-63243510 | Msa0305510:intron | 60.0% | |
| AGGGGGAAGGGTGGAAACCT+GGG | - | chr2_3:63243503-63243522 | Msa0305510:intron | 60.0% | |
| GCAGCAGACAATGCAGCCGA+GGG | - | chr2_3:63243977-63243996 | Msa0305510:intron | 60.0% | |
| ! | ATGCAGCCGAGGGTGCATTG+TGG | - | chr2_3:63243987-63244006 | Msa0305510:intron | 60.0% |
| CACACAATCCCGCACAGCGA+AGG | + | chr2_3:63244512-63244531 | None:intergenic | 60.0% | |
| CCAGACACGGTGCTCATGCT+TGG | + | chr2_3:63244655-63244674 | None:intergenic | 60.0% | |
| ! | CCAAGCATGAGCACCGTGTC+TGG | - | chr2_3:63244652-63244671 | Msa0305510:CDS | 60.0% |
| CTTCGGATTGTCCATCCCGG+TGG | + | chr2_3:63244790-63244809 | None:intergenic | 60.0% | |
| ACACCGGGACGCCTAATCCG+AGG | + | chr2_3:63243321-63243340 | None:intergenic | 65.0% | |
| ! | CGGATTAGGCGTCCCGGTGT+CGG | - | chr2_3:63243321-63243340 | Msa0305510:CDS | 65.0% |
| CACGACACCTGTCCGACACC+GGG | + | chr2_3:63243336-63243355 | None:intergenic | 65.0% | |
| CCCCTCTCCGTGTCTGTGTG+TGG | + | chr2_3:63243488-63243507 | None:intergenic | 65.0% | |
| CACAGACACGGAGAGGGGGA+AGG | - | chr2_3:63243490-63243509 | Msa0305510:intron | 65.0% | |
| GAGGGGGAAGGGTGGAAACC+TGG | - | chr2_3:63243502-63243521 | Msa0305510:intron | 65.0% | |
| GGCAGCAGACAATGCAGCCG+AGG | - | chr2_3:63243976-63243995 | Msa0305510:intron | 65.0% | |
| CCATCCCGGTGGTCGTGTTG+AGG | + | chr2_3:63244779-63244798 | None:intergenic | 65.0% | |
| CCTCAACACGACCACCGGGA+TGG | - | chr2_3:63244776-63244795 | Msa0305510:intron | 65.0% | |
| ! | TAGGCGTCCCGGTGTCGGAC+AGG | - | chr2_3:63243326-63243345 | Msa0305510:CDS | 70.0% |
| GACACGGAGAGGGGGAAGGG+TGG | - | chr2_3:63243494-63243513 | Msa0305510:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 63242324 | 63244942 | 63242324 | ID=Msa0305510;Name=Msa0305510 |
| chr2_3 | mRNA | 63242324 | 63244942 | 63242324 | ID=Msa0305510-mRNA-1;Parent=Msa0305510;Name=Msa0305510-mRNA-1;_AED=0.20;_eAED=0.26;_QI=0|0.5|0.28|1|1|0.71|7|0|334 |
| chr2_3 | exon | 63244866 | 63244942 | 63244866 | ID=Msa0305510-mRNA-1:exon:21165;Parent=Msa0305510-mRNA-1 |
| chr2_3 | exon | 63244570 | 63244757 | 63244570 | ID=Msa0305510-mRNA-1:exon:21164;Parent=Msa0305510-mRNA-1 |
| chr2_3 | exon | 63244345 | 63244456 | 63244345 | ID=Msa0305510-mRNA-1:exon:21163;Parent=Msa0305510-mRNA-1 |
| chr2_3 | exon | 63243241 | 63243410 | 63243241 | ID=Msa0305510-mRNA-1:exon:21162;Parent=Msa0305510-mRNA-1 |
| chr2_3 | exon | 63242719 | 63242824 | 63242719 | ID=Msa0305510-mRNA-1:exon:21161;Parent=Msa0305510-mRNA-1 |
| chr2_3 | exon | 63242450 | 63242688 | 63242450 | ID=Msa0305510-mRNA-1:exon:21160;Parent=Msa0305510-mRNA-1 |
| chr2_3 | exon | 63242324 | 63242433 | 63242324 | ID=Msa0305510-mRNA-1:exon:21159;Parent=Msa0305510-mRNA-1 |
| chr2_3 | CDS | 63244866 | 63244942 | 63244866 | ID=Msa0305510-mRNA-1:cds;Parent=Msa0305510-mRNA-1 |
| chr2_3 | CDS | 63244570 | 63244757 | 63244570 | ID=Msa0305510-mRNA-1:cds;Parent=Msa0305510-mRNA-1 |
| chr2_3 | CDS | 63244345 | 63244456 | 63244345 | ID=Msa0305510-mRNA-1:cds;Parent=Msa0305510-mRNA-1 |
| chr2_3 | CDS | 63243241 | 63243410 | 63243241 | ID=Msa0305510-mRNA-1:cds;Parent=Msa0305510-mRNA-1 |
| chr2_3 | CDS | 63242719 | 63242824 | 63242719 | ID=Msa0305510-mRNA-1:cds;Parent=Msa0305510-mRNA-1 |
| chr2_3 | CDS | 63242450 | 63242688 | 63242450 | ID=Msa0305510-mRNA-1:cds;Parent=Msa0305510-mRNA-1 |
| chr2_3 | CDS | 63242324 | 63242433 | 63242324 | ID=Msa0305510-mRNA-1:cds;Parent=Msa0305510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
