Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175080 | XP_003627442.1 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.08e-145 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175080 | sp|Q9LUM1|LOR11_ARATH | 43.204 | 206 | 104 | 6 | 1 | 195 | 23 | 226 | 2.32e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175080 | G7L964 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 5.17e-146 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1175080 | Msa1234540 | 0.827604 | 1.427605e-54 | -8.615850e-47 |
| Msa1175080 | Msa1277090 | 0.800365 | 1.491556e-48 | -8.615850e-47 |
| Msa1175080 | Msa1335170 | 0.824542 | 7.631289e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175080 | MtrunA17_Chr8g0345091 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 9.96e-150 | 413 |
| Msa1175080 | MtrunA17_Chr8g0386591 | 35.885 | 209 | 120 | 4 | 1 | 199 | 1 | 205 | 4.44e-37 | 127 |
| Msa1175080 | MtrunA17_Chr8g0386601 | 37.129 | 202 | 114 | 5 | 1 | 195 | 1 | 196 | 7.40e-37 | 127 |
| Msa1175080 | MtrunA17_Chr8g0386611 | 35.377 | 212 | 117 | 5 | 1 | 199 | 1 | 205 | 9.18e-36 | 124 |
| Msa1175080 | MtrunA17_Chr8g0386581 | 35.326 | 184 | 109 | 5 | 1 | 181 | 1 | 177 | 6.33e-29 | 107 |
| Msa1175080 | MtrunA17_Chr2g0333111 | 34.286 | 175 | 108 | 4 | 24 | 195 | 32 | 202 | 1.81e-26 | 101 |
| Msa1175080 | MtrunA17_Chr4g0003271 | 33.333 | 186 | 116 | 5 | 17 | 198 | 12 | 193 | 5.89e-26 | 99.4 |
| Msa1175080 | MtrunA17_Chr2g0333101 | 33.696 | 184 | 114 | 5 | 16 | 195 | 22 | 201 | 1.01e-25 | 99.0 |
| Msa1175080 | MtrunA17_Chr8g0387561 | 34.300 | 207 | 111 | 8 | 3 | 191 | 28 | 227 | 3.70e-23 | 92.8 |
| Msa1175080 | MtrunA17_Chr7g0244371 | 27.273 | 165 | 115 | 4 | 28 | 190 | 38 | 199 | 3.60e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175080 | AT3G14260.1 | 43.204 | 206 | 104 | 6 | 1 | 195 | 23 | 226 | 2.36e-45 | 150 |
| Msa1175080 | AT1G53875.1 | 41.784 | 213 | 101 | 6 | 1 | 199 | 25 | 228 | 5.59e-45 | 149 |
| Msa1175080 | AT1G53870.3 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1175080 | AT1G53870.1 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1175080 | AT1G53890.1 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1175080 | AT1G53890.4 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1175080 | AT1G63410.1 | 40.404 | 198 | 106 | 6 | 1 | 196 | 1 | 188 | 2.45e-37 | 128 |
| Msa1175080 | AT1G63410.2 | 40.404 | 198 | 106 | 6 | 1 | 196 | 1 | 188 | 5.32e-37 | 128 |
| Msa1175080 | AT1G53870.2 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1175080 | AT1G53870.4 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1175080 | AT1G53890.2 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1175080 | AT1G53890.5 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1175080 | AT1G53900.1 | 38.191 | 199 | 100 | 6 | 1 | 185 | 1 | 190 | 1.70e-32 | 123 |
| Msa1175080 | AT1G53900.3 | 38.191 | 199 | 100 | 6 | 1 | 185 | 16 | 205 | 2.02e-32 | 122 |
| Msa1175080 | AT1G53900.2 | 38.191 | 199 | 100 | 6 | 1 | 185 | 25 | 214 | 2.19e-32 | 122 |
| Msa1175080 | AT1G53890.3 | 41.317 | 167 | 70 | 6 | 17 | 176 | 37 | 182 | 3.37e-27 | 103 |
| Msa1175080 | AT2G38640.1 | 32.474 | 194 | 120 | 5 | 1 | 190 | 1 | 187 | 8.60e-24 | 93.6 |
| Msa1175080 | AT1G63410.3 | 38.608 | 158 | 85 | 6 | 1 | 156 | 1 | 148 | 3.61e-23 | 90.9 |
| Msa1175080 | AT3G15810.1 | 32.000 | 175 | 110 | 4 | 24 | 195 | 33 | 201 | 7.39e-21 | 86.7 |
| Msa1175080 | AT1G80120.1 | 33.516 | 182 | 111 | 5 | 19 | 195 | 14 | 190 | 1.76e-19 | 82.8 |
| Msa1175080 | AT5G41590.1 | 35.196 | 179 | 103 | 7 | 23 | 190 | 38 | 214 | 5.67e-19 | 81.6 |
Find 40 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGATCTTTCTCTAATTA+TGG | 0.126341 | 8_1:-6317036 | Msa1175080:CDS |
| TAAAATGTAATTAAGTATTT+TGG | 0.142417 | 8_1:-6316982 | Msa1175080:exon |
| CTCGAAAGCATGGTCCTTTC+TGG | 0.165842 | 8_1:+6317385 | None:intergenic |
| TCAACTTGTGGAATTGATTT+AGG | 0.189194 | 8_1:-6317092 | Msa1175080:CDS |
| AAACATATAGCATCTCTAAA+TGG | 0.207239 | 8_1:-6317356 | Msa1175080:CDS |
| AATACAAGTTGTCTAGGTTT+TGG | 0.215960 | 8_1:-6317440 | Msa1175080:CDS |
| ATTAGAGAAAGATCAATATT+TGG | 0.259853 | 8_1:+6317041 | None:intergenic |
| TTTGTTTACTATACTTAAAA+AGG | 0.272668 | 8_1:-6317708 | Msa1175080:intron |
| ATTGATCTTTCTCTAATTAT+GGG | 0.289911 | 8_1:-6317035 | Msa1175080:CDS |
| CAAGCCAGCTTGCAAAATAT+TGG | 0.302733 | 8_1:-6317259 | Msa1175080:CDS |
| AGCAAGAGACTTTCACCCTT+TGG | 0.364562 | 8_1:-6317862 | Msa1175080:CDS |
| TTGGGAAGGCTACAAGCTTC+CGG | 0.380606 | 8_1:-6317421 | Msa1175080:CDS |
| AACATATAGCATCTCTAAAT+GGG | 0.428061 | 8_1:-6317355 | Msa1175080:CDS |
| ATGAAATCTCTTGTATTGAA+TGG | 0.431267 | 8_1:-6317839 | Msa1175080:CDS |
| TCTCTTGTATTGAATGGAAA+GGG | 0.437349 | 8_1:-6317833 | Msa1175080:CDS |
| TTATGAAGTTGAACTTGGAT+TGG | 0.444332 | 8_1:-6317325 | Msa1175080:CDS |
| TGTAGAGGAAGCTAGTGCTT+GGG | 0.456051 | 8_1:+6317904 | None:intergenic |
| TACAAGAGATTTCATCCAAA+GGG | 0.460680 | 8_1:+6317847 | None:intergenic |
| TCTATATGCAATTTGACCAT+TGG | 0.471133 | 8_1:+6317793 | None:intergenic |
| TTCTGGTCATTCCTTGTCGC+CGG | 0.471570 | 8_1:+6317402 | None:intergenic |
| TCAAGTTATGAAGTTGAACT+TGG | 0.473959 | 8_1:-6317330 | Msa1175080:CDS |
| AAACAATGATTTGAATCTTG+TGG | 0.482400 | 8_1:-6316940 | Msa1175080:three_prime_UTR |
| TGCAAAATATTGGACAAGAA+TGG | 0.496976 | 8_1:-6317249 | Msa1175080:CDS |
| AAGGGTGAAAGTCTCTTGCT+TGG | 0.503462 | 8_1:+6317865 | None:intergenic |
| ATCTCTTGTATTGAATGGAA+AGG | 0.536878 | 8_1:-6317834 | Msa1175080:CDS |
| TTGTAGAGGAAGCTAGTGCT+TGG | 0.543990 | 8_1:+6317903 | None:intergenic |
| AGTGAAATTGCAAGTTGTAG+AGG | 0.544457 | 8_1:+6317889 | None:intergenic |
| TAGAGATCAAGTTCATCTCA+TGG | 0.549861 | 8_1:-6317747 | Msa1175080:CDS |
| TGCAGCAATACAAGTTGTCT+AGG | 0.554580 | 8_1:-6317446 | Msa1175080:intron |
| AAAGGACCATGCTTTCGAGT+TGG | 0.581337 | 8_1:-6317381 | Msa1175080:CDS |
| TGTACCGTCTTTGATTCCAA+TGG | 0.584212 | 8_1:-6317809 | Msa1175080:CDS |
| AGGAGAAAGAAGTCAACTTG+TGG | 0.584551 | 8_1:-6317104 | Msa1175080:CDS |
| GCTACAAGCTTCCGGCGACA+AGG | 0.591110 | 8_1:-6317413 | Msa1175080:CDS |
| ATACAAGAGATTTCATCCAA+AGG | 0.591425 | 8_1:+6317846 | None:intergenic |
| TTGACCATTGGAATCAAAGA+CGG | 0.601051 | 8_1:+6317805 | None:intergenic |
| GTAGAGGAAGCTAGTGCTTG+GGG | 0.609260 | 8_1:+6317905 | None:intergenic |
| GAATGGAGTGATAGTTGCAG+AGG | 0.623427 | 8_1:-6317232 | Msa1175080:intron |
| CTCTTGTATTGAATGGAAAG+GGG | 0.645005 | 8_1:-6317832 | Msa1175080:CDS |
| GTTCATCTCATGGATCAAAG+AGG | 0.650133 | 8_1:-6317737 | Msa1175080:CDS |
| GCGACAAGGAATGACCAGAA+AGG | 0.653073 | 8_1:-6317399 | Msa1175080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTTTGCAATATAA+AGG | - | chr8_1:6317304-6317323 | Msa1175080:CDS | 10.0% |
| !!! | CTTTCTATTTTATAATTATA+TGG | + | chr8_1:6317572-6317591 | None:intergenic | 10.0% |
| !! | TAAATACATGTATTAATTTA+TGG | - | chr8_1:6317714-6317733 | Msa1175080:CDS | 10.0% |
| !!! | TAAAATGTAATTAAGTATTT+TGG | - | chr8_1:6317878-6317897 | Msa1175080:CDS | 10.0% |
| !!! | TATAATTTTTTGCAATATAA+AGG | - | chr8_1:6317304-6317323 | Msa1175080:CDS | 10.0% |
| !!! | CTTTCTATTTTATAATTATA+TGG | + | chr8_1:6317572-6317591 | None:intergenic | 10.0% |
| !! | TAAATACATGTATTAATTTA+TGG | - | chr8_1:6317714-6317733 | Msa1175080:CDS | 10.0% |
| !!! | TAAAATGTAATTAAGTATTT+TGG | - | chr8_1:6317878-6317897 | Msa1175080:CDS | 10.0% |
| !! | TTTGTTTACTATACTTAAAA+AGG | - | chr8_1:6317152-6317171 | Msa1175080:intron | 15.0% |
| !!! | CTATTTTATAATTATATGGT+TGG | + | chr8_1:6317568-6317587 | None:intergenic | 15.0% |
| !! | TTTGTTTACTATACTTAAAA+AGG | - | chr8_1:6317152-6317171 | Msa1175080:intron | 15.0% |
| !!! | CTATTTTATAATTATATGGT+TGG | + | chr8_1:6317568-6317587 | None:intergenic | 15.0% |
| !! | TGATAAAATAAATGATGTTG+CGG | + | chr8_1:6317249-6317268 | None:intergenic | 20.0% |
| !!! | CAACATCATTTATTTTATCA+CGG | - | chr8_1:6317249-6317268 | Msa1175080:CDS | 20.0% |
| !! | ATTAGAGAAAGATCAATATT+TGG | + | chr8_1:6317822-6317841 | None:intergenic | 20.0% |
| !! | TATTGATCTTTCTCTAATTA+TGG | - | chr8_1:6317824-6317843 | Msa1175080:CDS | 20.0% |
| !! | ATTGATCTTTCTCTAATTAT+GGG | - | chr8_1:6317825-6317844 | Msa1175080:CDS | 20.0% |
| !! | TGATAAAATAAATGATGTTG+CGG | + | chr8_1:6317249-6317268 | None:intergenic | 20.0% |
| !!! | CAACATCATTTATTTTATCA+CGG | - | chr8_1:6317249-6317268 | Msa1175080:CDS | 20.0% |
| !! | ATTAGAGAAAGATCAATATT+TGG | + | chr8_1:6317822-6317841 | None:intergenic | 20.0% |
| !! | TATTGATCTTTCTCTAATTA+TGG | - | chr8_1:6317824-6317843 | Msa1175080:CDS | 20.0% |
| !! | ATTGATCTTTCTCTAATTAT+GGG | - | chr8_1:6317825-6317844 | Msa1175080:CDS | 20.0% |
| ! | ATGAAATCTCTTGTATTGAA+TGG | - | chr8_1:6317021-6317040 | Msa1175080:CDS | 25.0% |
| ! | AACAAAGTTTGCAAGTTTAT+AGG | + | chr8_1:6317212-6317231 | None:intergenic | 25.0% |
| !! | TATTGATCGATTCATCTAAA+AGG | + | chr8_1:6317368-6317387 | None:intergenic | 25.0% |
| ! | AAACATATAGCATCTCTAAA+TGG | - | chr8_1:6317504-6317523 | Msa1175080:intron | 25.0% |
| ! | AACATATAGCATCTCTAAAT+GGG | - | chr8_1:6317505-6317524 | Msa1175080:intron | 25.0% |
| ! | AAACAATGATTTGAATCTTG+TGG | - | chr8_1:6317920-6317939 | Msa1175080:CDS | 25.0% |
| ! | ATGAAATCTCTTGTATTGAA+TGG | - | chr8_1:6317021-6317040 | Msa1175080:CDS | 25.0% |
| ! | AACAAAGTTTGCAAGTTTAT+AGG | + | chr8_1:6317212-6317231 | None:intergenic | 25.0% |
| !! | TATTGATCGATTCATCTAAA+AGG | + | chr8_1:6317368-6317387 | None:intergenic | 25.0% |
| ! | AAACATATAGCATCTCTAAA+TGG | - | chr8_1:6317504-6317523 | Msa1175080:intron | 25.0% |
| ! | AACATATAGCATCTCTAAAT+GGG | - | chr8_1:6317505-6317524 | Msa1175080:intron | 25.0% |
| TACAAGAGATTTCATCCAAA+GGG | + | chr8_1:6317016-6317035 | None:intergenic | 30.0% | |
| ATACAAGAGATTTCATCCAA+AGG | + | chr8_1:6317017-6317036 | None:intergenic | 30.0% | |
| ATCTCTTGTATTGAATGGAA+AGG | - | chr8_1:6317026-6317045 | Msa1175080:CDS | 30.0% | |
| TCTCTTGTATTGAATGGAAA+GGG | - | chr8_1:6317027-6317046 | Msa1175080:CDS | 30.0% | |
| TCTATATGCAATTTGACCAT+TGG | + | chr8_1:6317070-6317089 | None:intergenic | 30.0% | |
| ! | AATACAAGTTGTCTAGGTTT+TGG | - | chr8_1:6317420-6317439 | Msa1175080:CDS | 30.0% |
| ! | ATACAAGTTGTCTAGGTTTT+GGG | - | chr8_1:6317421-6317440 | Msa1175080:CDS | 30.0% |
| TCAAGTTATGAAGTTGAACT+TGG | - | chr8_1:6317530-6317549 | Msa1175080:intron | 30.0% | |
| TTATGAAGTTGAACTTGGAT+TGG | - | chr8_1:6317535-6317554 | Msa1175080:intron | 30.0% | |
| TGCAAAATATTGGACAAGAA+TGG | - | chr8_1:6317611-6317630 | Msa1175080:intron | 30.0% | |
| ! | TCAACTTGTGGAATTGATTT+AGG | - | chr8_1:6317768-6317787 | Msa1175080:CDS | 30.0% |
| TACAAGAGATTTCATCCAAA+GGG | + | chr8_1:6317016-6317035 | None:intergenic | 30.0% | |
| ATACAAGAGATTTCATCCAA+AGG | + | chr8_1:6317017-6317036 | None:intergenic | 30.0% | |
| ATCTCTTGTATTGAATGGAA+AGG | - | chr8_1:6317026-6317045 | Msa1175080:CDS | 30.0% | |
| TCTCTTGTATTGAATGGAAA+GGG | - | chr8_1:6317027-6317046 | Msa1175080:CDS | 30.0% | |
| TCTATATGCAATTTGACCAT+TGG | + | chr8_1:6317070-6317089 | None:intergenic | 30.0% | |
| ! | AATACAAGTTGTCTAGGTTT+TGG | - | chr8_1:6317420-6317439 | Msa1175080:CDS | 30.0% |
| ! | ATACAAGTTGTCTAGGTTTT+GGG | - | chr8_1:6317421-6317440 | Msa1175080:CDS | 30.0% |
| TCAAGTTATGAAGTTGAACT+TGG | - | chr8_1:6317530-6317549 | Msa1175080:intron | 30.0% | |
| TTATGAAGTTGAACTTGGAT+TGG | - | chr8_1:6317535-6317554 | Msa1175080:intron | 30.0% | |
| TGCAAAATATTGGACAAGAA+TGG | - | chr8_1:6317611-6317630 | Msa1175080:intron | 30.0% | |
| ! | TCAACTTGTGGAATTGATTT+AGG | - | chr8_1:6317768-6317787 | Msa1175080:CDS | 30.0% |
| AGTGAAATTGCAAGTTGTAG+AGG | + | chr8_1:6316974-6316993 | None:intergenic | 35.0% | |
| CTCTTGTATTGAATGGAAAG+GGG | - | chr8_1:6317028-6317047 | Msa1175080:CDS | 35.0% | |
| TTGACCATTGGAATCAAAGA+CGG | + | chr8_1:6317058-6317077 | None:intergenic | 35.0% | |
| TAGAGATCAAGTTCATCTCA+TGG | - | chr8_1:6317113-6317132 | Msa1175080:intron | 35.0% | |
| ! | GATCGATTCATCTAAAAGGA+CGG | + | chr8_1:6317364-6317383 | None:intergenic | 35.0% |
| ! | TTGTCCAATATTTTGCAAGC+TGG | + | chr8_1:6317608-6317627 | None:intergenic | 35.0% |
| !!! | GTTTTTTCTATGAGCAGCTA+AGG | - | chr8_1:6317736-6317755 | Msa1175080:CDS | 35.0% |
| ! | AGGAGATGATGTTTTCACAA+TGG | - | chr8_1:6317788-6317807 | Msa1175080:CDS | 35.0% |
| ! | AGATGATGTTTTCACAATGG+TGG | - | chr8_1:6317791-6317810 | Msa1175080:CDS | 35.0% |
| AGTGAAATTGCAAGTTGTAG+AGG | + | chr8_1:6316974-6316993 | None:intergenic | 35.0% | |
| CTCTTGTATTGAATGGAAAG+GGG | - | chr8_1:6317028-6317047 | Msa1175080:CDS | 35.0% | |
| TTGACCATTGGAATCAAAGA+CGG | + | chr8_1:6317058-6317077 | None:intergenic | 35.0% | |
| TAGAGATCAAGTTCATCTCA+TGG | - | chr8_1:6317113-6317132 | Msa1175080:intron | 35.0% | |
| ! | GATCGATTCATCTAAAAGGA+CGG | + | chr8_1:6317364-6317383 | None:intergenic | 35.0% |
| ! | TTGTCCAATATTTTGCAAGC+TGG | + | chr8_1:6317608-6317627 | None:intergenic | 35.0% |
| !!! | GTTTTTTCTATGAGCAGCTA+AGG | - | chr8_1:6317736-6317755 | Msa1175080:CDS | 35.0% |
| ! | AGGAGATGATGTTTTCACAA+TGG | - | chr8_1:6317788-6317807 | Msa1175080:CDS | 35.0% |
| ! | AGATGATGTTTTCACAATGG+TGG | - | chr8_1:6317791-6317810 | Msa1175080:CDS | 35.0% |
| TGTACCGTCTTTGATTCCAA+TGG | - | chr8_1:6317051-6317070 | Msa1175080:CDS | 40.0% | |
| GTTCATCTCATGGATCAAAG+AGG | - | chr8_1:6317123-6317142 | Msa1175080:intron | 40.0% | |
| AACTTTGTTCAGCACGATTG+TGG | - | chr8_1:6317223-6317242 | Msa1175080:intron | 40.0% | |
| GACTGATATAGCTGCAATTG+TGG | + | chr8_1:6317275-6317294 | None:intergenic | 40.0% | |
| TGCAGCAATACAAGTTGTCT+AGG | - | chr8_1:6317414-6317433 | Msa1175080:CDS | 40.0% | |
| !!! | AAGTTGTCTAGGTTTTGGGA+AGG | - | chr8_1:6317425-6317444 | Msa1175080:CDS | 40.0% |
| ! | GTTTTACCAACTCGAAAGCA+TGG | + | chr8_1:6317488-6317507 | None:intergenic | 40.0% |
| CAAGCCAGCTTGCAAAATAT+TGG | - | chr8_1:6317601-6317620 | Msa1175080:intron | 40.0% | |
| AGGAGAAAGAAGTCAACTTG+TGG | - | chr8_1:6317756-6317775 | Msa1175080:CDS | 40.0% | |
| ! | TGATGTTTTCACAATGGTGG+TGG | - | chr8_1:6317794-6317813 | Msa1175080:CDS | 40.0% |
| TGTACCGTCTTTGATTCCAA+TGG | - | chr8_1:6317051-6317070 | Msa1175080:CDS | 40.0% | |
| GTTCATCTCATGGATCAAAG+AGG | - | chr8_1:6317123-6317142 | Msa1175080:intron | 40.0% | |
| AACTTTGTTCAGCACGATTG+TGG | - | chr8_1:6317223-6317242 | Msa1175080:intron | 40.0% | |
| GACTGATATAGCTGCAATTG+TGG | + | chr8_1:6317275-6317294 | None:intergenic | 40.0% | |
| TGCAGCAATACAAGTTGTCT+AGG | - | chr8_1:6317414-6317433 | Msa1175080:CDS | 40.0% | |
| !!! | AAGTTGTCTAGGTTTTGGGA+AGG | - | chr8_1:6317425-6317444 | Msa1175080:CDS | 40.0% |
| ! | GTTTTACCAACTCGAAAGCA+TGG | + | chr8_1:6317488-6317507 | None:intergenic | 40.0% |
| CAAGCCAGCTTGCAAAATAT+TGG | - | chr8_1:6317601-6317620 | Msa1175080:intron | 40.0% | |
| AGGAGAAAGAAGTCAACTTG+TGG | - | chr8_1:6317756-6317775 | Msa1175080:CDS | 40.0% | |
| ! | TGATGTTTTCACAATGGTGG+TGG | - | chr8_1:6317794-6317813 | Msa1175080:CDS | 40.0% |
| TGTAGAGGAAGCTAGTGCTT+GGG | + | chr8_1:6316959-6316978 | None:intergenic | 45.0% | |
| TTGTAGAGGAAGCTAGTGCT+TGG | + | chr8_1:6316960-6316979 | None:intergenic | 45.0% | |
| AAGGGTGAAAGTCTCTTGCT+TGG | + | chr8_1:6316998-6317017 | None:intergenic | 45.0% | |
| AGCAAGAGACTTTCACCCTT+TGG | - | chr8_1:6316998-6317017 | Msa1175080:CDS | 45.0% | |
| TTGCTGCACACACAAACGTA+CGG | + | chr8_1:6317402-6317421 | None:intergenic | 45.0% | |
| ! | AAAGGACCATGCTTTCGAGT+TGG | - | chr8_1:6317479-6317498 | Msa1175080:intron | 45.0% |
| GAATGGAGTGATAGTTGCAG+AGG | - | chr8_1:6317628-6317647 | Msa1175080:intron | 45.0% | |
| TGTAGAGGAAGCTAGTGCTT+GGG | + | chr8_1:6316959-6316978 | None:intergenic | 45.0% | |
| TTGTAGAGGAAGCTAGTGCT+TGG | + | chr8_1:6316960-6316979 | None:intergenic | 45.0% | |
| AAGGGTGAAAGTCTCTTGCT+TGG | + | chr8_1:6316998-6317017 | None:intergenic | 45.0% | |
| AGCAAGAGACTTTCACCCTT+TGG | - | chr8_1:6316998-6317017 | Msa1175080:CDS | 45.0% | |
| TTGCTGCACACACAAACGTA+CGG | + | chr8_1:6317402-6317421 | None:intergenic | 45.0% | |
| ! | AAAGGACCATGCTTTCGAGT+TGG | - | chr8_1:6317479-6317498 | Msa1175080:intron | 45.0% |
| GAATGGAGTGATAGTTGCAG+AGG | - | chr8_1:6317628-6317647 | Msa1175080:intron | 45.0% | |
| GTAGAGGAAGCTAGTGCTTG+GGG | + | chr8_1:6316958-6316977 | None:intergenic | 50.0% | |
| TTGGGAAGGCTACAAGCTTC+CGG | - | chr8_1:6317439-6317458 | Msa1175080:CDS | 50.0% | |
| TTCTGGTCATTCCTTGTCGC+CGG | + | chr8_1:6317461-6317480 | None:intergenic | 50.0% | |
| GCGACAAGGAATGACCAGAA+AGG | - | chr8_1:6317461-6317480 | Msa1175080:intron | 50.0% | |
| ! | CTCGAAAGCATGGTCCTTTC+TGG | + | chr8_1:6317478-6317497 | None:intergenic | 50.0% |
| GTAGAGGAAGCTAGTGCTTG+GGG | + | chr8_1:6316958-6316977 | None:intergenic | 50.0% | |
| TTGGGAAGGCTACAAGCTTC+CGG | - | chr8_1:6317439-6317458 | Msa1175080:CDS | 50.0% | |
| TTCTGGTCATTCCTTGTCGC+CGG | + | chr8_1:6317461-6317480 | None:intergenic | 50.0% | |
| GCGACAAGGAATGACCAGAA+AGG | - | chr8_1:6317461-6317480 | Msa1175080:intron | 50.0% | |
| ! | CTCGAAAGCATGGTCCTTTC+TGG | + | chr8_1:6317478-6317497 | None:intergenic | 50.0% |
| GCTACAAGCTTCCGGCGACA+AGG | - | chr8_1:6317447-6317466 | Msa1175080:intron | 60.0% | |
| GCTACAAGCTTCCGGCGACA+AGG | - | chr8_1:6317447-6317466 | Msa1175080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 6316940 | 6317942 | 6316940 | ID=Msa1175080;Name=Msa1175080 |
| chr8_1 | mRNA | 6316940 | 6317942 | 6316940 | ID=Msa1175080-mRNA-1;Parent=Msa1175080;Name=Msa1175080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.66|1|1|1|3|55|199 |
| chr8_1 | exon | 6316940 | 6317129 | 6316940 | ID=Msa1175080-mRNA-1:exon:2201;Parent=Msa1175080-mRNA-1 |
| chr8_1 | exon | 6317233 | 6317463 | 6317233 | ID=Msa1175080-mRNA-1:exon:2200;Parent=Msa1175080-mRNA-1 |
| chr8_1 | exon | 6317709 | 6317942 | 6317709 | ID=Msa1175080-mRNA-1:exon:2199;Parent=Msa1175080-mRNA-1 |
| chr8_1 | CDS | 6317709 | 6317942 | 6317709 | ID=Msa1175080-mRNA-1:cds;Parent=Msa1175080-mRNA-1 |
| chr8_1 | CDS | 6317233 | 6317463 | 6317233 | ID=Msa1175080-mRNA-1:cds;Parent=Msa1175080-mRNA-1 |
| chr8_1 | CDS | 6316995 | 6317129 | 6316995 | ID=Msa1175080-mRNA-1:cds;Parent=Msa1175080-mRNA-1 |
| chr8_1 | three_prime_UTR | 6316940 | 6316994 | 6316940 | ID=Msa1175080-mRNA-1:three_prime_utr;Parent=Msa1175080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
