Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335170 | XP_003627442.1 | 97.990 | 199 | 4 | 0 | 1 | 199 | 1 | 199 | 3.82e-145 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335170 | sp|Q9LUM1|LOR11_ARATH | 42.381 | 210 | 100 | 5 | 1 | 195 | 23 | 226 | 1.01e-43 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335170 | G7L964 | 97.990 | 199 | 4 | 0 | 1 | 199 | 1 | 199 | 1.83e-145 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234540 | Msa1335170 | 0.936119 | 2.886023e-97 | -8.615850e-47 |
| Msa1277090 | Msa1335170 | 0.957425 | 2.799763e-115 | -8.615850e-47 |
| Msa1175080 | Msa1335170 | 0.824542 | 7.631289e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335170 | MtrunA17_Chr8g0345091 | 97.990 | 199 | 4 | 0 | 1 | 199 | 1 | 199 | 3.52e-149 | 412 |
| Msa1335170 | MtrunA17_Chr8g0386601 | 37.624 | 202 | 113 | 5 | 1 | 195 | 1 | 196 | 1.34e-37 | 129 |
| Msa1335170 | MtrunA17_Chr8g0386591 | 35.885 | 209 | 120 | 4 | 1 | 199 | 1 | 205 | 6.33e-37 | 127 |
| Msa1335170 | MtrunA17_Chr8g0386611 | 35.377 | 212 | 117 | 5 | 1 | 199 | 1 | 205 | 1.23e-35 | 124 |
| Msa1335170 | MtrunA17_Chr8g0386581 | 36.413 | 184 | 107 | 5 | 1 | 181 | 1 | 177 | 1.47e-29 | 109 |
| Msa1335170 | MtrunA17_Chr2g0333111 | 34.286 | 175 | 108 | 4 | 24 | 195 | 32 | 202 | 1.25e-26 | 101 |
| Msa1335170 | MtrunA17_Chr4g0003271 | 33.333 | 186 | 116 | 5 | 17 | 198 | 12 | 193 | 3.69e-26 | 100 |
| Msa1335170 | MtrunA17_Chr2g0333101 | 33.696 | 184 | 114 | 5 | 16 | 195 | 22 | 201 | 6.80e-26 | 99.8 |
| Msa1335170 | MtrunA17_Chr8g0387561 | 34.300 | 207 | 111 | 8 | 3 | 191 | 28 | 227 | 2.33e-23 | 93.2 |
| Msa1335170 | MtrunA17_Chr7g0244371 | 27.273 | 165 | 115 | 4 | 28 | 190 | 38 | 199 | 2.82e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335170 | AT1G53875.1 | 42.254 | 213 | 100 | 6 | 1 | 199 | 25 | 228 | 1.10e-45 | 150 |
| Msa1335170 | AT3G14260.1 | 42.381 | 210 | 100 | 5 | 1 | 195 | 23 | 226 | 1.03e-44 | 148 |
| Msa1335170 | AT1G53870.3 | 45.789 | 190 | 87 | 6 | 17 | 199 | 37 | 217 | 4.68e-44 | 146 |
| Msa1335170 | AT1G53870.1 | 45.789 | 190 | 87 | 6 | 17 | 199 | 37 | 217 | 4.68e-44 | 146 |
| Msa1335170 | AT1G53890.1 | 45.789 | 190 | 87 | 6 | 17 | 199 | 37 | 217 | 4.68e-44 | 146 |
| Msa1335170 | AT1G53890.4 | 45.789 | 190 | 87 | 6 | 17 | 199 | 37 | 217 | 4.68e-44 | 146 |
| Msa1335170 | AT1G63410.1 | 39.899 | 198 | 107 | 6 | 1 | 196 | 1 | 188 | 1.04e-36 | 127 |
| Msa1335170 | AT1G63410.2 | 39.899 | 198 | 107 | 6 | 1 | 196 | 1 | 188 | 2.48e-36 | 126 |
| Msa1335170 | AT1G53900.1 | 38.693 | 199 | 99 | 6 | 1 | 185 | 1 | 190 | 3.76e-33 | 124 |
| Msa1335170 | AT1G53900.3 | 38.693 | 199 | 99 | 6 | 1 | 185 | 16 | 205 | 3.79e-33 | 125 |
| Msa1335170 | AT1G53900.2 | 38.693 | 199 | 99 | 6 | 1 | 185 | 25 | 214 | 4.45e-33 | 124 |
| Msa1335170 | AT1G53870.2 | 43.713 | 167 | 78 | 6 | 17 | 176 | 37 | 194 | 4.45e-33 | 117 |
| Msa1335170 | AT1G53870.4 | 43.713 | 167 | 78 | 6 | 17 | 176 | 37 | 194 | 4.45e-33 | 117 |
| Msa1335170 | AT1G53890.2 | 43.713 | 167 | 78 | 6 | 17 | 176 | 37 | 194 | 4.45e-33 | 117 |
| Msa1335170 | AT1G53890.5 | 43.713 | 167 | 78 | 6 | 17 | 176 | 37 | 194 | 4.45e-33 | 117 |
| Msa1335170 | AT1G53890.3 | 40.719 | 167 | 71 | 6 | 17 | 176 | 37 | 182 | 1.41e-26 | 102 |
| Msa1335170 | AT2G38640.1 | 31.795 | 195 | 120 | 6 | 1 | 190 | 1 | 187 | 5.93e-24 | 94.4 |
| Msa1335170 | AT1G63410.3 | 37.975 | 158 | 86 | 6 | 1 | 156 | 1 | 148 | 1.59e-22 | 89.4 |
| Msa1335170 | AT3G15810.1 | 32.000 | 175 | 110 | 4 | 24 | 195 | 33 | 201 | 4.86e-21 | 87.0 |
| Msa1335170 | AT1G80120.1 | 33.516 | 182 | 111 | 5 | 19 | 195 | 14 | 190 | 1.16e-19 | 83.2 |
| Msa1335170 | AT5G41590.1 | 33.520 | 179 | 106 | 6 | 23 | 190 | 38 | 214 | 4.19e-19 | 82.0 |
Find 39 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAAGCATGGTCCTTTC+TGG | 0.121895 | tig0000135:+18769 | Msa1335170:intergenic |
| TATTGATCTTTCTCTAATTA+TGG | 0.126341 | tig0000135:-18418 | Msa1335170:CDS |
| TAAAATGTAATTAAGTATTT+TGG | 0.142417 | tig0000135:-18364 | Msa1335170:exon |
| AAACATATAGCATCTCTAAA+TGG | 0.207239 | tig0000135:-18740 | Msa1335170:CDS |
| AATATAAGTTGTCTAGGTTT+TGG | 0.215960 | tig0000135:-18824 | Msa1335170:CDS |
| ATTAGAGAAAGATCAATATT+TGG | 0.259853 | tig0000135:+18423 | Msa1335170:intergenic |
| TTTGTTTACTATACTTAAAA+AGG | 0.279488 | tig0000135:-19093 | Msa1335170:intron |
| ATTGATCTTTCTCTAATTAT+GGG | 0.289911 | tig0000135:-18417 | Msa1335170:CDS |
| CAAGCCAGCTTGCAAAATAT+TGG | 0.302733 | tig0000135:-18643 | Msa1335170:CDS |
| TTGGGAAGGTTACAAGCTTC+CGG | 0.354783 | tig0000135:-18805 | Msa1335170:CDS |
| AGCAAGAGACTTTCACCCTT+TGG | 0.364562 | tig0000135:-19247 | Msa1335170:CDS |
| AACATATAGCATCTCTAAAT+GGG | 0.428061 | tig0000135:-18739 | Msa1335170:CDS |
| ATGAAATCTCTTGTATTGAA+TGG | 0.431267 | tig0000135:-19224 | Msa1335170:CDS |
| TCTCTTGTATTGAATGGAAA+GGG | 0.437349 | tig0000135:-19218 | Msa1335170:CDS |
| TCAACTTGTGGAATTGATCT+AGG | 0.443197 | tig0000135:-18474 | Msa1335170:CDS |
| TTATGAAGTTGAACTTGGAT+TGG | 0.444332 | tig0000135:-18709 | Msa1335170:CDS |
| TGTAGAGGAAGCTAGTGCTT+GGG | 0.456051 | tig0000135:+19289 | Msa1335170:intergenic |
| TACAAGAGATTTCATCCAAA+GGG | 0.460680 | tig0000135:+19232 | Msa1335170:intergenic |
| TCTATATGCAATTTGACCAT+TGG | 0.471133 | tig0000135:+19178 | Msa1335170:intergenic |
| TCAAGTTATGAAGTTGAACT+TGG | 0.473959 | tig0000135:-18714 | Msa1335170:CDS |
| AAACAATGATTTGAATCTTG+TGG | 0.482400 | tig0000135:-18322 | Msa1335170:three_prime_UTR |
| TTCTGGTCGTTCCTTGTCGC+CGG | 0.485881 | tig0000135:+18786 | Msa1335170:intergenic |
| AAGGGTGAAAGTCTCTTGCT+TGG | 0.503462 | tig0000135:+19250 | Msa1335170:intergenic |
| ATCTCTTGTATTGAATGGAA+AGG | 0.536878 | tig0000135:-19219 | Msa1335170:CDS |
| TTGTAGAGGAAGCTAGTGCT+TGG | 0.543990 | tig0000135:+19288 | Msa1335170:intergenic |
| AGTGAAATTGCAAGTTGTAG+AGG | 0.544457 | tig0000135:+19274 | Msa1335170:intergenic |
| TGCAGCAATATAAGTTGTCT+AGG | 0.546244 | tig0000135:-18830 | Msa1335170:intron |
| TAGAGATCAAGTTCATCTCA+TGG | 0.549861 | tig0000135:-19132 | Msa1335170:CDS |
| AAAGGACCATGCTTTCAAGT+TGG | 0.568351 | tig0000135:-18765 | Msa1335170:CDS |
| TGTACCGTCTTTGATTCCAA+TGG | 0.584212 | tig0000135:-19194 | Msa1335170:CDS |
| AGGAGAAAGAAGTCAACTTG+TGG | 0.584551 | tig0000135:-18486 | Msa1335170:CDS |
| ATACAAGAGATTTCATCCAA+AGG | 0.591425 | tig0000135:+19231 | Msa1335170:intergenic |
| TTGACCATTGGAATCAAAGA+CGG | 0.601051 | tig0000135:+19190 | Msa1335170:intergenic |
| GCGACAAGGAACGACCAGAA+AGG | 0.601912 | tig0000135:-18783 | Msa1335170:CDS |
| GTTACAAGCTTCCGGCGACA+AGG | 0.606422 | tig0000135:-18797 | Msa1335170:CDS |
| AAATGGAGTGATAGTTGCAG+AGG | 0.607549 | tig0000135:-18616 | Msa1335170:intron |
| GTAGAGGAAGCTAGTGCTTG+GGG | 0.609260 | tig0000135:+19290 | Msa1335170:intergenic |
| CTCTTGTATTGAATGGAAAG+GGG | 0.645005 | tig0000135:-19217 | Msa1335170:CDS |
| GTTCATCTCATGGATCAAAG+AGG | 0.650133 | tig0000135:-19122 | Msa1335170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAAAATTTTGAATTTTTT+TGG | - | tig0000135:18724-18743 | Msa1335170:CDS | 10.0% |
| !!! | CTTTCTATTTTATAATTATA+TGG | + | tig0000135:18955-18974 | Msa1335170:intergenic | 10.0% |
| !!! | TAAAATGTAATTAAGTATTT+TGG | - | tig0000135:19263-19282 | Msa1335170:CDS | 10.0% |
| !!! | GTTAAAATTTTGAATTTTTT+TGG | - | tig0000135:18724-18743 | Msa1335170:CDS | 10.0% |
| !!! | CTTTCTATTTTATAATTATA+TGG | + | tig0000135:18955-18974 | Msa1335170:intergenic | 10.0% |
| !!! | TAAAATGTAATTAAGTATTT+TGG | - | tig0000135:19263-19282 | Msa1335170:CDS | 10.0% |
| !! | TTTGTTTACTATACTTAAAA+AGG | - | tig0000135:18534-18553 | Msa1335170:intron | 15.0% |
| !!! | CTATTTTATAATTATATGGT+TGG | + | tig0000135:18951-18970 | Msa1335170:intergenic | 15.0% |
| !! | TTTGTTTACTATACTTAAAA+AGG | - | tig0000135:18534-18553 | Msa1335170:intron | 15.0% |
| !!! | CTATTTTATAATTATATGGT+TGG | + | tig0000135:18951-18970 | Msa1335170:intergenic | 15.0% |
| !!! | ACATTTTTTTCAGAAAAGTT+TGG | - | tig0000135:19049-19068 | Msa1335170:intron | 20.0% |
| !! | ATTAGAGAAAGATCAATATT+TGG | + | tig0000135:19207-19226 | Msa1335170:intergenic | 20.0% |
| !! | TATTGATCTTTCTCTAATTA+TGG | - | tig0000135:19209-19228 | Msa1335170:CDS | 20.0% |
| !! | ATTGATCTTTCTCTAATTAT+GGG | - | tig0000135:19210-19229 | Msa1335170:CDS | 20.0% |
| !!! | ACATTTTTTTCAGAAAAGTT+TGG | - | tig0000135:19049-19068 | Msa1335170:intron | 20.0% |
| !! | ATTAGAGAAAGATCAATATT+TGG | + | tig0000135:19207-19226 | Msa1335170:intergenic | 20.0% |
| !! | TATTGATCTTTCTCTAATTA+TGG | - | tig0000135:19209-19228 | Msa1335170:CDS | 20.0% |
| !! | ATTGATCTTTCTCTAATTAT+GGG | - | tig0000135:19210-19229 | Msa1335170:CDS | 20.0% |
| ! | ATGAAATCTCTTGTATTGAA+TGG | - | tig0000135:18403-18422 | Msa1335170:CDS | 25.0% |
| ! | TACAAACTTTGCAAGTTTAT+AGG | + | tig0000135:18591-18610 | Msa1335170:intergenic | 25.0% |
| !! | AATATAAGTTGTCTAGGTTT+TGG | - | tig0000135:18803-18822 | Msa1335170:CDS | 25.0% |
| !! | ATATAAGTTGTCTAGGTTTT+GGG | - | tig0000135:18804-18823 | Msa1335170:CDS | 25.0% |
| ! | AAACATATAGCATCTCTAAA+TGG | - | tig0000135:18887-18906 | Msa1335170:intron | 25.0% |
| ! | AACATATAGCATCTCTAAAT+GGG | - | tig0000135:18888-18907 | Msa1335170:intron | 25.0% |
| ! | TGCAAAATATTGGACAAAAA+TGG | - | tig0000135:18994-19013 | Msa1335170:intron | 25.0% |
| ! | AAACAATGATTTGAATCTTG+TGG | - | tig0000135:19305-19324 | Msa1335170:CDS | 25.0% |
| ! | ATGAAATCTCTTGTATTGAA+TGG | - | tig0000135:18403-18422 | Msa1335170:CDS | 25.0% |
| ! | TACAAACTTTGCAAGTTTAT+AGG | + | tig0000135:18591-18610 | Msa1335170:intergenic | 25.0% |
| !! | AATATAAGTTGTCTAGGTTT+TGG | - | tig0000135:18803-18822 | Msa1335170:CDS | 25.0% |
| !! | ATATAAGTTGTCTAGGTTTT+GGG | - | tig0000135:18804-18823 | Msa1335170:CDS | 25.0% |
| ! | AAACATATAGCATCTCTAAA+TGG | - | tig0000135:18887-18906 | Msa1335170:intron | 25.0% |
| ! | AACATATAGCATCTCTAAAT+GGG | - | tig0000135:18888-18907 | Msa1335170:intron | 25.0% |
| ! | TGCAAAATATTGGACAAAAA+TGG | - | tig0000135:18994-19013 | Msa1335170:intron | 25.0% |
| TACAAGAGATTTCATCCAAA+GGG | + | tig0000135:18398-18417 | Msa1335170:intergenic | 30.0% | |
| ATACAAGAGATTTCATCCAA+AGG | + | tig0000135:18399-18418 | Msa1335170:intergenic | 30.0% | |
| ATCTCTTGTATTGAATGGAA+AGG | - | tig0000135:18408-18427 | Msa1335170:CDS | 30.0% | |
| TCTCTTGTATTGAATGGAAA+GGG | - | tig0000135:18409-18428 | Msa1335170:CDS | 30.0% | |
| TCTATATGCAATTTGACCAT+TGG | + | tig0000135:18452-18471 | Msa1335170:intergenic | 30.0% | |
| TGATAAAATAACTGATGTCG+CGG | + | tig0000135:18628-18647 | Msa1335170:intergenic | 30.0% | |
| !! | CGACATCAGTTATTTTATCA+CGG | - | tig0000135:18628-18647 | Msa1335170:CDS | 30.0% |
| TCAAGTTATGAAGTTGAACT+TGG | - | tig0000135:18913-18932 | Msa1335170:intron | 30.0% | |
| TTATGAAGTTGAACTTGGAT+TGG | - | tig0000135:18918-18937 | Msa1335170:intron | 30.0% | |
| TACAAGAGATTTCATCCAAA+GGG | + | tig0000135:18398-18417 | Msa1335170:intergenic | 30.0% | |
| ATACAAGAGATTTCATCCAA+AGG | + | tig0000135:18399-18418 | Msa1335170:intergenic | 30.0% | |
| ATCTCTTGTATTGAATGGAA+AGG | - | tig0000135:18408-18427 | Msa1335170:CDS | 30.0% | |
| TCTCTTGTATTGAATGGAAA+GGG | - | tig0000135:18409-18428 | Msa1335170:CDS | 30.0% | |
| TCTATATGCAATTTGACCAT+TGG | + | tig0000135:18452-18471 | Msa1335170:intergenic | 30.0% | |
| TGATAAAATAACTGATGTCG+CGG | + | tig0000135:18628-18647 | Msa1335170:intergenic | 30.0% | |
| !! | CGACATCAGTTATTTTATCA+CGG | - | tig0000135:18628-18647 | Msa1335170:CDS | 30.0% |
| TCAAGTTATGAAGTTGAACT+TGG | - | tig0000135:18913-18932 | Msa1335170:intron | 30.0% | |
| TTATGAAGTTGAACTTGGAT+TGG | - | tig0000135:18918-18937 | Msa1335170:intron | 30.0% | |
| AGTGAAATTGCAAGTTGTAG+AGG | + | tig0000135:18356-18375 | Msa1076720:intergenic | 35.0% | |
| CTCTTGTATTGAATGGAAAG+GGG | - | tig0000135:18410-18429 | Msa1335170:CDS | 35.0% | |
| TTGACCATTGGAATCAAAGA+CGG | + | tig0000135:18440-18459 | Msa1335170:intergenic | 35.0% | |
| TAGAGATCAAGTTCATCTCA+TGG | - | tig0000135:18495-18514 | Msa1335170:intron | 35.0% | |
| AAGTTTGTACAACACGATTG+TGG | - | tig0000135:18602-18621 | Msa1335170:intron | 35.0% | |
| TGCAGCAATATAAGTTGTCT+AGG | - | tig0000135:18797-18816 | Msa1335170:CDS | 35.0% | |
| ! | GTTTTACCAACTTGAAAGCA+TGG | + | tig0000135:18871-18890 | Msa1335170:intergenic | 35.0% |
| ! | TTGTCCAATATTTTGCAAGC+TGG | + | tig0000135:18991-19010 | Msa1335170:intergenic | 35.0% |
| !!! | GTTTTTTCTATGAGCAGCTA+AGG | - | tig0000135:19121-19140 | Msa1335170:CDS | 35.0% |
| TCAACTTGTGGAATTGATCT+AGG | - | tig0000135:19153-19172 | Msa1335170:CDS | 35.0% | |
| ! | AGGAGATGATGTTTTCACAA+TGG | - | tig0000135:19173-19192 | Msa1335170:CDS | 35.0% |
| ! | AGATGATGTTTTCACAATGG+TGG | - | tig0000135:19176-19195 | Msa1335170:CDS | 35.0% |
| AGTGAAATTGCAAGTTGTAG+AGG | + | tig0000135:18356-18375 | Msa1335170:intergenic | 35.0% | |
| CTCTTGTATTGAATGGAAAG+GGG | - | tig0000135:18410-18429 | Msa1335170:CDS | 35.0% | |
| TTGACCATTGGAATCAAAGA+CGG | + | tig0000135:18440-18459 | Msa1335170:intergenic | 35.0% | |
| TAGAGATCAAGTTCATCTCA+TGG | - | tig0000135:18495-18514 | Msa1335170:intron | 35.0% | |
| AAGTTTGTACAACACGATTG+TGG | - | tig0000135:18602-18621 | Msa1335170:intron | 35.0% | |
| TGCAGCAATATAAGTTGTCT+AGG | - | tig0000135:18797-18816 | Msa1335170:CDS | 35.0% | |
| ! | GTTTTACCAACTTGAAAGCA+TGG | + | tig0000135:18871-18890 | Msa1335170:intergenic | 35.0% |
| ! | TTGTCCAATATTTTGCAAGC+TGG | + | tig0000135:18991-19010 | Msa1335170:intergenic | 35.0% |
| !!! | GTTTTTTCTATGAGCAGCTA+AGG | - | tig0000135:19121-19140 | Msa1335170:CDS | 35.0% |
| TCAACTTGTGGAATTGATCT+AGG | - | tig0000135:19153-19172 | Msa1335170:CDS | 35.0% | |
| ! | AGGAGATGATGTTTTCACAA+TGG | - | tig0000135:19173-19192 | Msa1335170:CDS | 35.0% |
| ! | AGATGATGTTTTCACAATGG+TGG | - | tig0000135:19176-19195 | Msa1335170:CDS | 35.0% |
| TGTACCGTCTTTGATTCCAA+TGG | - | tig0000135:18433-18452 | Msa1335170:CDS | 40.0% | |
| GTTCATCTCATGGATCAAAG+AGG | - | tig0000135:18505-18524 | Msa1335170:intron | 40.0% | |
| !!! | AAGTTGTCTAGGTTTTGGGA+AGG | - | tig0000135:18808-18827 | Msa1335170:CDS | 40.0% |
| ! | AAAGGACCATGCTTTCAAGT+TGG | - | tig0000135:18862-18881 | Msa1335170:intron | 40.0% |
| CAAGCCAGCTTGCAAAATAT+TGG | - | tig0000135:18984-19003 | Msa1335170:intron | 40.0% | |
| AAATGGAGTGATAGTTGCAG+AGG | - | tig0000135:19011-19030 | Msa1335170:intron | 40.0% | |
| AGGAGAAAGAAGTCAACTTG+TGG | - | tig0000135:19141-19160 | Msa1335170:CDS | 40.0% | |
| ! | TGATGTTTTCACAATGGTGG+TGG | - | tig0000135:19179-19198 | Msa1335170:CDS | 40.0% |
| TGTACCGTCTTTGATTCCAA+TGG | - | tig0000135:18433-18452 | Msa1335170:CDS | 40.0% | |
| GTTCATCTCATGGATCAAAG+AGG | - | tig0000135:18505-18524 | Msa1335170:intron | 40.0% | |
| !!! | AAGTTGTCTAGGTTTTGGGA+AGG | - | tig0000135:18808-18827 | Msa1335170:CDS | 40.0% |
| ! | AAAGGACCATGCTTTCAAGT+TGG | - | tig0000135:18862-18881 | Msa1335170:intron | 40.0% |
| CAAGCCAGCTTGCAAAATAT+TGG | - | tig0000135:18984-19003 | Msa1335170:intron | 40.0% | |
| AAATGGAGTGATAGTTGCAG+AGG | - | tig0000135:19011-19030 | Msa1335170:intron | 40.0% | |
| AGGAGAAAGAAGTCAACTTG+TGG | - | tig0000135:19141-19160 | Msa1335170:CDS | 40.0% | |
| ! | TGATGTTTTCACAATGGTGG+TGG | - | tig0000135:19179-19198 | Msa1335170:CDS | 40.0% |
| TGTAGAGGAAGCTAGTGCTT+GGG | + | tig0000135:18341-18360 | Msa1076720:intergenic | 45.0% | |
| TTGTAGAGGAAGCTAGTGCT+TGG | + | tig0000135:18342-18361 | Msa1076720:intergenic | 45.0% | |
| AAGGGTGAAAGTCTCTTGCT+TGG | + | tig0000135:18380-18399 | Msa1076720:intergenic | 45.0% | |
| AGCAAGAGACTTTCACCCTT+TGG | - | tig0000135:18380-18399 | Msa1335170:CDS | 45.0% | |
| GACTGATGTAGCTGCAATTG+TGG | + | tig0000135:18654-18673 | Msa1335170:intergenic | 45.0% | |
| TTGGGAAGGTTACAAGCTTC+CGG | - | tig0000135:18822-18841 | Msa1335170:CDS | 45.0% | |
| ! | CTTGAAAGCATGGTCCTTTC+TGG | + | tig0000135:18861-18880 | Msa1335170:intergenic | 45.0% |
| TGTAGAGGAAGCTAGTGCTT+GGG | + | tig0000135:18341-18360 | Msa1335170:intergenic | 45.0% | |
| TTGTAGAGGAAGCTAGTGCT+TGG | + | tig0000135:18342-18361 | Msa1335170:intergenic | 45.0% | |
| AAGGGTGAAAGTCTCTTGCT+TGG | + | tig0000135:18380-18399 | Msa1335170:intergenic | 45.0% | |
| AGCAAGAGACTTTCACCCTT+TGG | - | tig0000135:18380-18399 | Msa1335170:CDS | 45.0% | |
| GACTGATGTAGCTGCAATTG+TGG | + | tig0000135:18654-18673 | Msa1335170:intergenic | 45.0% | |
| TTGGGAAGGTTACAAGCTTC+CGG | - | tig0000135:18822-18841 | Msa1335170:CDS | 45.0% | |
| ! | CTTGAAAGCATGGTCCTTTC+TGG | + | tig0000135:18861-18880 | Msa1335170:intergenic | 45.0% |
| GTAGAGGAAGCTAGTGCTTG+GGG | + | tig0000135:18340-18359 | Msa1076720:intergenic | 50.0% | |
| GTAGAGGAAGCTAGTGCTTG+GGG | + | tig0000135:18340-18359 | Msa1335170:intergenic | 50.0% | |
| GTTACAAGCTTCCGGCGACA+AGG | - | tig0000135:18830-18849 | Msa1335170:intron | 55.0% | |
| TTCTGGTCGTTCCTTGTCGC+CGG | + | tig0000135:18844-18863 | Msa1335170:intergenic | 55.0% | |
| GCGACAAGGAACGACCAGAA+AGG | - | tig0000135:18844-18863 | Msa1335170:intron | 55.0% | |
| GTTACAAGCTTCCGGCGACA+AGG | - | tig0000135:18830-18849 | Msa1335170:intron | 55.0% | |
| TTCTGGTCGTTCCTTGTCGC+CGG | + | tig0000135:18844-18863 | Msa1335170:intergenic | 55.0% | |
| GCGACAAGGAACGACCAGAA+AGG | - | tig0000135:18844-18863 | Msa1335170:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000135 | gene | 18322 | 19327 | 18322 | ID=Msa1335170;Name=Msa1335170 |
| tig0000135 | mRNA | 18322 | 19327 | 18322 | ID=Msa1335170-mRNA-1;Parent=Msa1335170;Name=Msa1335170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.66|1|1|1|3|55|199 |
| tig0000135 | exon | 18322 | 18511 | 18322 | ID=Msa1335170-mRNA-1:exon:19;Parent=Msa1335170-mRNA-1 |
| tig0000135 | exon | 18617 | 18847 | 18617 | ID=Msa1335170-mRNA-1:exon:18;Parent=Msa1335170-mRNA-1 |
| tig0000135 | exon | 19094 | 19327 | 19094 | ID=Msa1335170-mRNA-1:exon:17;Parent=Msa1335170-mRNA-1 |
| tig0000135 | CDS | 19094 | 19327 | 19094 | ID=Msa1335170-mRNA-1:cds;Parent=Msa1335170-mRNA-1 |
| tig0000135 | CDS | 18617 | 18847 | 18617 | ID=Msa1335170-mRNA-1:cds;Parent=Msa1335170-mRNA-1 |
| tig0000135 | CDS | 18377 | 18511 | 18377 | ID=Msa1335170-mRNA-1:cds;Parent=Msa1335170-mRNA-1 |
| tig0000135 | three_prime_UTR | 18322 | 18376 | 18322 | ID=Msa1335170-mRNA-1:three_prime_utr;Parent=Msa1335170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
