Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234540 | XP_003627442.1 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 1.08e-145 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234540 | sp|Q9LUM1|LOR11_ARATH | 43.204 | 206 | 104 | 6 | 1 | 195 | 23 | 226 | 2.32e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234540 | G7L964 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 5.17e-146 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0713060 | Msa1234540 | 0.805844 | 1.097290e-49 | -8.615850e-47 |
| Msa0129640 | Msa1234540 | 0.815570 | 8.640992e-52 | -8.615850e-47 |
| Msa1234540 | Msa1252810 | 0.802404 | 5.701681e-49 | -8.615850e-47 |
| Msa1234540 | Msa1277090 | 0.977747 | 2.107918e-144 | -8.615850e-47 |
| Msa1234540 | Msa1335170 | 0.936119 | 2.886023e-97 | -8.615850e-47 |
| Msa1234540 | Msa1412410 | 0.803362 | 3.614978e-49 | -8.615850e-47 |
| Msa1234540 | Msa1427860 | 0.805312 | 1.418480e-49 | -8.615850e-47 |
| Msa1175080 | Msa1234540 | 0.827604 | 1.427605e-54 | -8.615850e-47 |
| Msa1199870 | Msa1234540 | 0.817110 | 3.908026e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234540 | MtrunA17_Chr8g0345091 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 9.96e-150 | 413 |
| Msa1234540 | MtrunA17_Chr8g0386591 | 35.885 | 209 | 120 | 4 | 1 | 199 | 1 | 205 | 4.44e-37 | 127 |
| Msa1234540 | MtrunA17_Chr8g0386601 | 37.129 | 202 | 114 | 5 | 1 | 195 | 1 | 196 | 7.40e-37 | 127 |
| Msa1234540 | MtrunA17_Chr8g0386611 | 35.377 | 212 | 117 | 5 | 1 | 199 | 1 | 205 | 9.18e-36 | 124 |
| Msa1234540 | MtrunA17_Chr8g0386581 | 35.326 | 184 | 109 | 5 | 1 | 181 | 1 | 177 | 6.33e-29 | 107 |
| Msa1234540 | MtrunA17_Chr2g0333111 | 34.286 | 175 | 108 | 4 | 24 | 195 | 32 | 202 | 1.81e-26 | 101 |
| Msa1234540 | MtrunA17_Chr4g0003271 | 33.333 | 186 | 116 | 5 | 17 | 198 | 12 | 193 | 5.89e-26 | 99.4 |
| Msa1234540 | MtrunA17_Chr2g0333101 | 33.696 | 184 | 114 | 5 | 16 | 195 | 22 | 201 | 1.01e-25 | 99.0 |
| Msa1234540 | MtrunA17_Chr8g0387561 | 34.300 | 207 | 111 | 8 | 3 | 191 | 28 | 227 | 3.70e-23 | 92.8 |
| Msa1234540 | MtrunA17_Chr7g0244371 | 27.273 | 165 | 115 | 4 | 28 | 190 | 38 | 199 | 3.60e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234540 | AT3G14260.1 | 43.204 | 206 | 104 | 6 | 1 | 195 | 23 | 226 | 2.36e-45 | 150 |
| Msa1234540 | AT1G53875.1 | 41.784 | 213 | 101 | 6 | 1 | 199 | 25 | 228 | 5.59e-45 | 149 |
| Msa1234540 | AT1G53870.3 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1234540 | AT1G53870.1 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1234540 | AT1G53890.1 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1234540 | AT1G53890.4 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1234540 | AT1G63410.1 | 40.404 | 198 | 106 | 6 | 1 | 196 | 1 | 188 | 2.45e-37 | 128 |
| Msa1234540 | AT1G63410.2 | 40.404 | 198 | 106 | 6 | 1 | 196 | 1 | 188 | 5.32e-37 | 128 |
| Msa1234540 | AT1G53870.2 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1234540 | AT1G53870.4 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1234540 | AT1G53890.2 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1234540 | AT1G53890.5 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1234540 | AT1G53900.1 | 38.191 | 199 | 100 | 6 | 1 | 185 | 1 | 190 | 1.70e-32 | 123 |
| Msa1234540 | AT1G53900.3 | 38.191 | 199 | 100 | 6 | 1 | 185 | 16 | 205 | 2.02e-32 | 122 |
| Msa1234540 | AT1G53900.2 | 38.191 | 199 | 100 | 6 | 1 | 185 | 25 | 214 | 2.19e-32 | 122 |
| Msa1234540 | AT1G53890.3 | 41.317 | 167 | 70 | 6 | 17 | 176 | 37 | 182 | 3.37e-27 | 103 |
| Msa1234540 | AT2G38640.1 | 32.474 | 194 | 120 | 5 | 1 | 190 | 1 | 187 | 8.60e-24 | 93.6 |
| Msa1234540 | AT1G63410.3 | 38.608 | 158 | 85 | 6 | 1 | 156 | 1 | 148 | 3.61e-23 | 90.9 |
| Msa1234540 | AT3G15810.1 | 32.000 | 175 | 110 | 4 | 24 | 195 | 33 | 201 | 7.39e-21 | 86.7 |
| Msa1234540 | AT1G80120.1 | 33.516 | 182 | 111 | 5 | 19 | 195 | 14 | 190 | 1.76e-19 | 82.8 |
| Msa1234540 | AT5G41590.1 | 35.196 | 179 | 103 | 7 | 23 | 190 | 38 | 214 | 5.67e-19 | 81.6 |
Find 39 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGATCTTTCTCTAATTA+TGG | 0.126341 | 8_2:+11874069 | Msa1234540:CDS |
| TAAAATGTAATTAAGTATTT+TGG | 0.142417 | 8_2:+11874123 | Msa1234540:exon |
| CTCGAAAGCATGGTCCTTTC+TGG | 0.163823 | 8_2:-11873718 | None:intergenic |
| AAACATATAGCATCTCTAAA+TGG | 0.207239 | 8_2:+11873747 | Msa1234540:CDS |
| AATATAAGTTGTCTAGGTTT+TGG | 0.215960 | 8_2:+11873663 | Msa1234540:CDS |
| ATTAGAGAAAGATCAATATT+TGG | 0.259853 | 8_2:-11874064 | None:intergenic |
| TTTGTTTACTATACTTAAAA+AGG | 0.279488 | 8_2:+11873394 | Msa1234540:CDS |
| ATTGATCTTTCTCTAATTAT+GGG | 0.289911 | 8_2:+11874070 | Msa1234540:CDS |
| CAAGCCAGCTTGCAAAATAT+TGG | 0.302733 | 8_2:+11873844 | Msa1234540:CDS |
| TTGGGAAGGTTACAAGCTTC+CGG | 0.354783 | 8_2:+11873682 | Msa1234540:CDS |
| AGCAAGAGACTTTCACCCTT+TGG | 0.364562 | 8_2:+11873240 | Msa1234540:CDS |
| AACATATAGCATCTCTAAAT+GGG | 0.428061 | 8_2:+11873748 | Msa1234540:CDS |
| ATGAAATCTCTTGTATTGAA+TGG | 0.431267 | 8_2:+11873263 | Msa1234540:CDS |
| TCTCTTGTATTGAATGGAAA+GGG | 0.437349 | 8_2:+11873269 | Msa1234540:CDS |
| TCAACTTGTGGAATTGATCT+AGG | 0.443197 | 8_2:+11874013 | Msa1234540:CDS |
| TTATGAAGTTGAACTTGGAT+TGG | 0.444332 | 8_2:+11873778 | Msa1234540:CDS |
| TGTAGAGGAAGCTAGTGCTT+GGG | 0.456051 | 8_2:-11873198 | None:intergenic |
| TACAAGAGATTTCATCCAAA+GGG | 0.460680 | 8_2:-11873255 | None:intergenic |
| TCTATATGCAATTTGACCAT+TGG | 0.471133 | 8_2:-11873309 | None:intergenic |
| TCAAGTTATGAAGTTGAACT+TGG | 0.473959 | 8_2:+11873773 | Msa1234540:CDS |
| AAACAATGATTTGAATCTTG+TGG | 0.482400 | 8_2:+11874165 | Msa1234540:three_prime_UTR |
| TTCTGGTCGTTCCTTGTCGC+CGG | 0.485881 | 8_2:-11873701 | None:intergenic |
| AAGGGTGAAAGTCTCTTGCT+TGG | 0.503462 | 8_2:-11873237 | None:intergenic |
| ATCTCTTGTATTGAATGGAA+AGG | 0.536878 | 8_2:+11873268 | Msa1234540:CDS |
| TTGTAGAGGAAGCTAGTGCT+TGG | 0.543990 | 8_2:-11873199 | None:intergenic |
| AGTGAAATTGCAAGTTGTAG+AGG | 0.544457 | 8_2:-11873213 | None:intergenic |
| TGCAGCAATATAAGTTGTCT+AGG | 0.546244 | 8_2:+11873657 | Msa1234540:intron |
| TAGAGATCAAGTTCATCTCA+TGG | 0.549861 | 8_2:+11873355 | Msa1234540:CDS |
| AAAGGACCATGCTTTCGAGT+TGG | 0.581337 | 8_2:+11873722 | Msa1234540:CDS |
| TGTACCGTCTTTGATTCCAA+TGG | 0.584212 | 8_2:+11873293 | Msa1234540:CDS |
| AGGAGAAAGAAGTCAACTTG+TGG | 0.584551 | 8_2:+11874001 | Msa1234540:CDS |
| ATACAAGAGATTTCATCCAA+AGG | 0.591425 | 8_2:-11873256 | None:intergenic |
| TTGACCATTGGAATCAAAGA+CGG | 0.601051 | 8_2:-11873297 | None:intergenic |
| GCGACAAGGAACGACCAGAA+AGG | 0.601912 | 8_2:+11873704 | Msa1234540:CDS |
| GTTACAAGCTTCCGGCGACA+AGG | 0.606422 | 8_2:+11873690 | Msa1234540:CDS |
| AAATGGAGTGATAGTTGCAG+AGG | 0.607549 | 8_2:+11873871 | Msa1234540:CDS |
| GTAGAGGAAGCTAGTGCTTG+GGG | 0.609260 | 8_2:-11873197 | None:intergenic |
| CTCTTGTATTGAATGGAAAG+GGG | 0.645005 | 8_2:+11873270 | Msa1234540:CDS |
| GTTCATCTCATGGATCAAAG+AGG | 0.650133 | 8_2:+11873365 | Msa1234540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTCTATTTTATAATTATA+TGG | - | chr8_2:11873815-11873834 | None:intergenic | 10.0% |
| !!! | TAAAATGTAATTAAGTATTT+TGG | + | chr8_2:11874123-11874142 | Msa1234540:exon | 10.0% |
| !!! | CTTTCTATTTTATAATTATA+TGG | - | chr8_2:11873815-11873834 | None:intergenic | 10.0% |
| !!! | TAAAATGTAATTAAGTATTT+TGG | + | chr8_2:11874123-11874142 | Msa1234540:exon | 10.0% |
| !! | TTTGTTTACTATACTTAAAA+AGG | + | chr8_2:11873394-11873413 | Msa1234540:CDS | 15.0% |
| !!! | CTATTTTATAATTATATGGT+TGG | - | chr8_2:11873811-11873830 | None:intergenic | 15.0% |
| !! | TTTGTTTACTATACTTAAAA+AGG | + | chr8_2:11873394-11873413 | Msa1234540:CDS | 15.0% |
| !!! | CTATTTTATAATTATATGGT+TGG | - | chr8_2:11873811-11873830 | None:intergenic | 15.0% |
| !!! | CATTTTTTTTCAGAAAAGTT+TGG | + | chr8_2:11873910-11873929 | Msa1234540:intron | 20.0% |
| !! | ATTAGAGAAAGATCAATATT+TGG | - | chr8_2:11874067-11874086 | None:intergenic | 20.0% |
| !! | TATTGATCTTTCTCTAATTA+TGG | + | chr8_2:11874069-11874088 | Msa1234540:CDS | 20.0% |
| !! | ATTGATCTTTCTCTAATTAT+GGG | + | chr8_2:11874070-11874089 | Msa1234540:CDS | 20.0% |
| !!! | CATTTTTTTTCAGAAAAGTT+TGG | + | chr8_2:11873910-11873929 | Msa1234540:intron | 20.0% |
| !! | ATTAGAGAAAGATCAATATT+TGG | - | chr8_2:11874067-11874086 | None:intergenic | 20.0% |
| !! | TATTGATCTTTCTCTAATTA+TGG | + | chr8_2:11874069-11874088 | Msa1234540:CDS | 20.0% |
| !! | ATTGATCTTTCTCTAATTAT+GGG | + | chr8_2:11874070-11874089 | Msa1234540:CDS | 20.0% |
| ! | ATGAAATCTCTTGTATTGAA+TGG | + | chr8_2:11873263-11873282 | Msa1234540:CDS | 25.0% |
| ! | TACAAACTTTGCAAGTTTAT+AGG | - | chr8_2:11873451-11873470 | None:intergenic | 25.0% |
| !! | AATATAAGTTGTCTAGGTTT+TGG | + | chr8_2:11873663-11873682 | Msa1234540:CDS | 25.0% |
| !! | ATATAAGTTGTCTAGGTTTT+GGG | + | chr8_2:11873664-11873683 | Msa1234540:CDS | 25.0% |
| ! | AAACATATAGCATCTCTAAA+TGG | + | chr8_2:11873747-11873766 | Msa1234540:CDS | 25.0% |
| ! | AACATATAGCATCTCTAAAT+GGG | + | chr8_2:11873748-11873767 | Msa1234540:CDS | 25.0% |
| ! | TGCAAAATATTGGACAAAAA+TGG | + | chr8_2:11873854-11873873 | Msa1234540:CDS | 25.0% |
| ! | AAACAATGATTTGAATCTTG+TGG | + | chr8_2:11874165-11874184 | Msa1234540:three_prime_UTR | 25.0% |
| ! | ATGAAATCTCTTGTATTGAA+TGG | + | chr8_2:11873263-11873282 | Msa1234540:CDS | 25.0% |
| ! | TACAAACTTTGCAAGTTTAT+AGG | - | chr8_2:11873451-11873470 | None:intergenic | 25.0% |
| !! | AATATAAGTTGTCTAGGTTT+TGG | + | chr8_2:11873663-11873682 | Msa1234540:CDS | 25.0% |
| !! | ATATAAGTTGTCTAGGTTTT+GGG | + | chr8_2:11873664-11873683 | Msa1234540:CDS | 25.0% |
| ! | AAACATATAGCATCTCTAAA+TGG | + | chr8_2:11873747-11873766 | Msa1234540:CDS | 25.0% |
| ! | AACATATAGCATCTCTAAAT+GGG | + | chr8_2:11873748-11873767 | Msa1234540:CDS | 25.0% |
| ! | TGCAAAATATTGGACAAAAA+TGG | + | chr8_2:11873854-11873873 | Msa1234540:CDS | 25.0% |
| TACAAGAGATTTCATCCAAA+GGG | - | chr8_2:11873258-11873277 | None:intergenic | 30.0% | |
| ATACAAGAGATTTCATCCAA+AGG | - | chr8_2:11873259-11873278 | None:intergenic | 30.0% | |
| ATCTCTTGTATTGAATGGAA+AGG | + | chr8_2:11873268-11873287 | Msa1234540:CDS | 30.0% | |
| TCTCTTGTATTGAATGGAAA+GGG | + | chr8_2:11873269-11873288 | Msa1234540:CDS | 30.0% | |
| TCTATATGCAATTTGACCAT+TGG | - | chr8_2:11873312-11873331 | None:intergenic | 30.0% | |
| TGATAAAATAACTGATGTCG+CGG | - | chr8_2:11873488-11873507 | None:intergenic | 30.0% | |
| !! | CGACATCAGTTATTTTATCA+CGG | + | chr8_2:11873488-11873507 | Msa1234540:intron | 30.0% |
| TCAAGTTATGAAGTTGAACT+TGG | + | chr8_2:11873773-11873792 | Msa1234540:CDS | 30.0% | |
| TTATGAAGTTGAACTTGGAT+TGG | + | chr8_2:11873778-11873797 | Msa1234540:CDS | 30.0% | |
| TACAAGAGATTTCATCCAAA+GGG | - | chr8_2:11873258-11873277 | None:intergenic | 30.0% | |
| ATACAAGAGATTTCATCCAA+AGG | - | chr8_2:11873259-11873278 | None:intergenic | 30.0% | |
| ATCTCTTGTATTGAATGGAA+AGG | + | chr8_2:11873268-11873287 | Msa1234540:CDS | 30.0% | |
| TCTCTTGTATTGAATGGAAA+GGG | + | chr8_2:11873269-11873288 | Msa1234540:CDS | 30.0% | |
| TCTATATGCAATTTGACCAT+TGG | - | chr8_2:11873312-11873331 | None:intergenic | 30.0% | |
| TGATAAAATAACTGATGTCG+CGG | - | chr8_2:11873488-11873507 | None:intergenic | 30.0% | |
| !! | CGACATCAGTTATTTTATCA+CGG | + | chr8_2:11873488-11873507 | Msa1234540:intron | 30.0% |
| TCAAGTTATGAAGTTGAACT+TGG | + | chr8_2:11873773-11873792 | Msa1234540:CDS | 30.0% | |
| TTATGAAGTTGAACTTGGAT+TGG | + | chr8_2:11873778-11873797 | Msa1234540:CDS | 30.0% | |
| AGTGAAATTGCAAGTTGTAG+AGG | - | chr8_2:11873216-11873235 | None:intergenic | 35.0% | |
| CTCTTGTATTGAATGGAAAG+GGG | + | chr8_2:11873270-11873289 | Msa1234540:CDS | 35.0% | |
| TTGACCATTGGAATCAAAGA+CGG | - | chr8_2:11873300-11873319 | None:intergenic | 35.0% | |
| TAGAGATCAAGTTCATCTCA+TGG | + | chr8_2:11873355-11873374 | Msa1234540:CDS | 35.0% | |
| AAGTTTGTACAACACGATTG+TGG | + | chr8_2:11873462-11873481 | Msa1234540:intron | 35.0% | |
| TGCAGCAATATAAGTTGTCT+AGG | + | chr8_2:11873657-11873676 | Msa1234540:intron | 35.0% | |
| ! | TTGTCCAATATTTTGCAAGC+TGG | - | chr8_2:11873851-11873870 | None:intergenic | 35.0% |
| !!! | GTTTTTTCTATGAGCAGCTA+AGG | + | chr8_2:11873981-11874000 | Msa1234540:intron | 35.0% |
| TCAACTTGTGGAATTGATCT+AGG | + | chr8_2:11874013-11874032 | Msa1234540:CDS | 35.0% | |
| ! | AGGAGATGATGTTTTCACAA+TGG | + | chr8_2:11874033-11874052 | Msa1234540:CDS | 35.0% |
| ! | AGATGATGTTTTCACAATGG+TGG | + | chr8_2:11874036-11874055 | Msa1234540:CDS | 35.0% |
| AGTGAAATTGCAAGTTGTAG+AGG | - | chr8_2:11873216-11873235 | None:intergenic | 35.0% | |
| CTCTTGTATTGAATGGAAAG+GGG | + | chr8_2:11873270-11873289 | Msa1234540:CDS | 35.0% | |
| TTGACCATTGGAATCAAAGA+CGG | - | chr8_2:11873300-11873319 | None:intergenic | 35.0% | |
| TAGAGATCAAGTTCATCTCA+TGG | + | chr8_2:11873355-11873374 | Msa1234540:CDS | 35.0% | |
| AAGTTTGTACAACACGATTG+TGG | + | chr8_2:11873462-11873481 | Msa1234540:intron | 35.0% | |
| TGCAGCAATATAAGTTGTCT+AGG | + | chr8_2:11873657-11873676 | Msa1234540:intron | 35.0% | |
| ! | TTGTCCAATATTTTGCAAGC+TGG | - | chr8_2:11873851-11873870 | None:intergenic | 35.0% |
| !!! | GTTTTTTCTATGAGCAGCTA+AGG | + | chr8_2:11873981-11874000 | Msa1234540:intron | 35.0% |
| TCAACTTGTGGAATTGATCT+AGG | + | chr8_2:11874013-11874032 | Msa1234540:CDS | 35.0% | |
| ! | AGGAGATGATGTTTTCACAA+TGG | + | chr8_2:11874033-11874052 | Msa1234540:CDS | 35.0% |
| ! | AGATGATGTTTTCACAATGG+TGG | + | chr8_2:11874036-11874055 | Msa1234540:CDS | 35.0% |
| TGTACCGTCTTTGATTCCAA+TGG | + | chr8_2:11873293-11873312 | Msa1234540:CDS | 40.0% | |
| GTTCATCTCATGGATCAAAG+AGG | + | chr8_2:11873365-11873384 | Msa1234540:CDS | 40.0% | |
| !!! | AAGTTGTCTAGGTTTTGGGA+AGG | + | chr8_2:11873668-11873687 | Msa1234540:CDS | 40.0% |
| ! | GTTTTACCAACTCGAAAGCA+TGG | - | chr8_2:11873731-11873750 | None:intergenic | 40.0% |
| CAAGCCAGCTTGCAAAATAT+TGG | + | chr8_2:11873844-11873863 | Msa1234540:CDS | 40.0% | |
| AAATGGAGTGATAGTTGCAG+AGG | + | chr8_2:11873871-11873890 | Msa1234540:CDS | 40.0% | |
| AGGAGAAAGAAGTCAACTTG+TGG | + | chr8_2:11874001-11874020 | Msa1234540:CDS | 40.0% | |
| ! | TGATGTTTTCACAATGGTGG+TGG | + | chr8_2:11874039-11874058 | Msa1234540:CDS | 40.0% |
| TGTACCGTCTTTGATTCCAA+TGG | + | chr8_2:11873293-11873312 | Msa1234540:CDS | 40.0% | |
| GTTCATCTCATGGATCAAAG+AGG | + | chr8_2:11873365-11873384 | Msa1234540:CDS | 40.0% | |
| !!! | AAGTTGTCTAGGTTTTGGGA+AGG | + | chr8_2:11873668-11873687 | Msa1234540:CDS | 40.0% |
| ! | GTTTTACCAACTCGAAAGCA+TGG | - | chr8_2:11873731-11873750 | None:intergenic | 40.0% |
| CAAGCCAGCTTGCAAAATAT+TGG | + | chr8_2:11873844-11873863 | Msa1234540:CDS | 40.0% | |
| AAATGGAGTGATAGTTGCAG+AGG | + | chr8_2:11873871-11873890 | Msa1234540:CDS | 40.0% | |
| AGGAGAAAGAAGTCAACTTG+TGG | + | chr8_2:11874001-11874020 | Msa1234540:CDS | 40.0% | |
| ! | TGATGTTTTCACAATGGTGG+TGG | + | chr8_2:11874039-11874058 | Msa1234540:CDS | 40.0% |
| TGTAGAGGAAGCTAGTGCTT+GGG | - | chr8_2:11873201-11873220 | None:intergenic | 45.0% | |
| TTGTAGAGGAAGCTAGTGCT+TGG | - | chr8_2:11873202-11873221 | None:intergenic | 45.0% | |
| AAGGGTGAAAGTCTCTTGCT+TGG | - | chr8_2:11873240-11873259 | None:intergenic | 45.0% | |
| AGCAAGAGACTTTCACCCTT+TGG | + | chr8_2:11873240-11873259 | Msa1234540:CDS | 45.0% | |
| GACTGATGTAGCTGCAATTG+TGG | - | chr8_2:11873514-11873533 | None:intergenic | 45.0% | |
| TTGGGAAGGTTACAAGCTTC+CGG | + | chr8_2:11873682-11873701 | Msa1234540:CDS | 45.0% | |
| ! | AAAGGACCATGCTTTCGAGT+TGG | + | chr8_2:11873722-11873741 | Msa1234540:CDS | 45.0% |
| TGTAGAGGAAGCTAGTGCTT+GGG | - | chr8_2:11873201-11873220 | None:intergenic | 45.0% | |
| TTGTAGAGGAAGCTAGTGCT+TGG | - | chr8_2:11873202-11873221 | None:intergenic | 45.0% | |
| AAGGGTGAAAGTCTCTTGCT+TGG | - | chr8_2:11873240-11873259 | None:intergenic | 45.0% | |
| AGCAAGAGACTTTCACCCTT+TGG | + | chr8_2:11873240-11873259 | Msa1234540:CDS | 45.0% | |
| GACTGATGTAGCTGCAATTG+TGG | - | chr8_2:11873514-11873533 | None:intergenic | 45.0% | |
| TTGGGAAGGTTACAAGCTTC+CGG | + | chr8_2:11873682-11873701 | Msa1234540:CDS | 45.0% | |
| ! | AAAGGACCATGCTTTCGAGT+TGG | + | chr8_2:11873722-11873741 | Msa1234540:CDS | 45.0% |
| GTAGAGGAAGCTAGTGCTTG+GGG | - | chr8_2:11873200-11873219 | None:intergenic | 50.0% | |
| ! | CTCGAAAGCATGGTCCTTTC+TGG | - | chr8_2:11873721-11873740 | None:intergenic | 50.0% |
| GTAGAGGAAGCTAGTGCTTG+GGG | - | chr8_2:11873200-11873219 | None:intergenic | 50.0% | |
| ! | CTCGAAAGCATGGTCCTTTC+TGG | - | chr8_2:11873721-11873740 | None:intergenic | 50.0% |
| GTTACAAGCTTCCGGCGACA+AGG | + | chr8_2:11873690-11873709 | Msa1234540:CDS | 55.0% | |
| TTCTGGTCGTTCCTTGTCGC+CGG | - | chr8_2:11873704-11873723 | None:intergenic | 55.0% | |
| GCGACAAGGAACGACCAGAA+AGG | + | chr8_2:11873704-11873723 | Msa1234540:CDS | 55.0% | |
| GTTACAAGCTTCCGGCGACA+AGG | + | chr8_2:11873690-11873709 | Msa1234540:CDS | 55.0% | |
| TTCTGGTCGTTCCTTGTCGC+CGG | - | chr8_2:11873704-11873723 | None:intergenic | 55.0% | |
| GCGACAAGGAACGACCAGAA+AGG | + | chr8_2:11873704-11873723 | Msa1234540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 11873182 | 11874187 | 11873182 | ID=Msa1234540;Name=Msa1234540 |
| chr8_2 | mRNA | 11873182 | 11874187 | 11873182 | ID=Msa1234540-mRNA-1;Parent=Msa1234540;Name=Msa1234540-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.66|1|1|1|3|55|199 |
| chr8_2 | exon | 11873182 | 11873415 | 11873182 | ID=Msa1234540-mRNA-1:exon:4589;Parent=Msa1234540-mRNA-1 |
| chr8_2 | exon | 11873662 | 11873892 | 11873662 | ID=Msa1234540-mRNA-1:exon:4590;Parent=Msa1234540-mRNA-1 |
| chr8_2 | exon | 11873998 | 11874187 | 11873998 | ID=Msa1234540-mRNA-1:exon:4591;Parent=Msa1234540-mRNA-1 |
| chr8_2 | CDS | 11873182 | 11873415 | 11873182 | ID=Msa1234540-mRNA-1:cds;Parent=Msa1234540-mRNA-1 |
| chr8_2 | CDS | 11873662 | 11873892 | 11873662 | ID=Msa1234540-mRNA-1:cds;Parent=Msa1234540-mRNA-1 |
| chr8_2 | CDS | 11873998 | 11874132 | 11873998 | ID=Msa1234540-mRNA-1:cds;Parent=Msa1234540-mRNA-1 |
| chr8_2 | three_prime_UTR | 11874133 | 11874187 | 11874133 | ID=Msa1234540-mRNA-1:three_prime_utr;Parent=Msa1234540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
