Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277090 | sp|Q9LUM1|LOR11_ARATH | 43.204 | 206 | 104 | 6 | 1 | 195 | 23 | 226 | 2.32e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277090 | G7L964 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 5.17e-146 | 413 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234540 | Msa1277090 | 0.977747 | 2.107918e-144 | -8.615850e-47 |
| Msa1277090 | Msa1335170 | 0.957425 | 2.799763e-115 | -8.615850e-47 |
| Msa1175080 | Msa1277090 | 0.800365 | 1.491556e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277090 | MtrunA17_Chr8g0345091 | 98.492 | 199 | 3 | 0 | 1 | 199 | 1 | 199 | 9.96e-150 | 413 |
| Msa1277090 | MtrunA17_Chr8g0386591 | 35.885 | 209 | 120 | 4 | 1 | 199 | 1 | 205 | 4.44e-37 | 127 |
| Msa1277090 | MtrunA17_Chr8g0386601 | 37.129 | 202 | 114 | 5 | 1 | 195 | 1 | 196 | 7.40e-37 | 127 |
| Msa1277090 | MtrunA17_Chr8g0386611 | 35.377 | 212 | 117 | 5 | 1 | 199 | 1 | 205 | 9.18e-36 | 124 |
| Msa1277090 | MtrunA17_Chr8g0386581 | 35.326 | 184 | 109 | 5 | 1 | 181 | 1 | 177 | 6.33e-29 | 107 |
| Msa1277090 | MtrunA17_Chr2g0333111 | 34.286 | 175 | 108 | 4 | 24 | 195 | 32 | 202 | 1.81e-26 | 101 |
| Msa1277090 | MtrunA17_Chr4g0003271 | 33.333 | 186 | 116 | 5 | 17 | 198 | 12 | 193 | 5.89e-26 | 99.4 |
| Msa1277090 | MtrunA17_Chr2g0333101 | 33.696 | 184 | 114 | 5 | 16 | 195 | 22 | 201 | 1.01e-25 | 99.0 |
| Msa1277090 | MtrunA17_Chr8g0387561 | 34.300 | 207 | 111 | 8 | 3 | 191 | 28 | 227 | 3.70e-23 | 92.8 |
| Msa1277090 | MtrunA17_Chr7g0244371 | 27.273 | 165 | 115 | 4 | 28 | 190 | 38 | 199 | 3.60e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277090 | AT3G14260.1 | 43.204 | 206 | 104 | 6 | 1 | 195 | 23 | 226 | 2.36e-45 | 150 |
| Msa1277090 | AT1G53875.1 | 41.784 | 213 | 101 | 6 | 1 | 199 | 25 | 228 | 5.59e-45 | 149 |
| Msa1277090 | AT1G53870.3 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1277090 | AT1G53870.1 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1277090 | AT1G53890.1 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1277090 | AT1G53890.4 | 46.316 | 190 | 86 | 6 | 17 | 199 | 37 | 217 | 9.13e-45 | 148 |
| Msa1277090 | AT1G63410.1 | 40.404 | 198 | 106 | 6 | 1 | 196 | 1 | 188 | 2.45e-37 | 128 |
| Msa1277090 | AT1G63410.2 | 40.404 | 198 | 106 | 6 | 1 | 196 | 1 | 188 | 5.32e-37 | 128 |
| Msa1277090 | AT1G53870.2 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1277090 | AT1G53870.4 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1277090 | AT1G53890.2 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1277090 | AT1G53890.5 | 44.311 | 167 | 77 | 6 | 17 | 176 | 37 | 194 | 1.01e-33 | 119 |
| Msa1277090 | AT1G53900.1 | 38.191 | 199 | 100 | 6 | 1 | 185 | 1 | 190 | 1.70e-32 | 123 |
| Msa1277090 | AT1G53900.3 | 38.191 | 199 | 100 | 6 | 1 | 185 | 16 | 205 | 2.02e-32 | 122 |
| Msa1277090 | AT1G53900.2 | 38.191 | 199 | 100 | 6 | 1 | 185 | 25 | 214 | 2.19e-32 | 122 |
| Msa1277090 | AT1G53890.3 | 41.317 | 167 | 70 | 6 | 17 | 176 | 37 | 182 | 3.37e-27 | 103 |
| Msa1277090 | AT2G38640.1 | 32.474 | 194 | 120 | 5 | 1 | 190 | 1 | 187 | 8.60e-24 | 93.6 |
| Msa1277090 | AT1G63410.3 | 38.608 | 158 | 85 | 6 | 1 | 156 | 1 | 148 | 3.61e-23 | 90.9 |
| Msa1277090 | AT3G15810.1 | 32.000 | 175 | 110 | 4 | 24 | 195 | 33 | 201 | 7.39e-21 | 86.7 |
| Msa1277090 | AT1G80120.1 | 33.516 | 182 | 111 | 5 | 19 | 195 | 14 | 190 | 1.76e-19 | 82.8 |
| Msa1277090 | AT5G41590.1 | 35.196 | 179 | 103 | 7 | 23 | 190 | 38 | 214 | 5.67e-19 | 81.6 |
Find 39 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGATCTTTCTCTAATTA+TGG | 0.126341 | 8_3:-12226742 | Msa1277090:CDS |
| TAAAATGTAATTAAGTATTT+TGG | 0.142417 | 8_3:-12226688 | Msa1277090:exon |
| CTCGAAAGCATGGTCCTTTC+TGG | 0.163823 | 8_3:+12227092 | None:intergenic |
| TCAACTTGTGGAATTGATTT+AGG | 0.189194 | 8_3:-12226798 | Msa1277090:CDS |
| AAACATATAGCATCTCTAAA+TGG | 0.207239 | 8_3:-12227063 | Msa1277090:CDS |
| AATATAAGTTGTCTAGGTTT+TGG | 0.215960 | 8_3:-12227147 | Msa1277090:CDS |
| ATTAGAGAAAGATCAATATT+TGG | 0.259853 | 8_3:+12226747 | None:intergenic |
| TTTGTTTACTATACTTAAAA+AGG | 0.279488 | 8_3:-12227417 | Msa1277090:intron |
| ATTGATCTTTCTCTAATTAT+GGG | 0.289911 | 8_3:-12226741 | Msa1277090:CDS |
| CAAGCCAGCTTGCAAAATAT+TGG | 0.302733 | 8_3:-12226966 | Msa1277090:CDS |
| TTGGGAAGGTTACAAGCTTC+CGG | 0.354783 | 8_3:-12227128 | Msa1277090:CDS |
| AGCAAGAGACTTTCACCCTT+TGG | 0.364562 | 8_3:-12227571 | Msa1277090:CDS |
| AACATATAGCATCTCTAAAT+GGG | 0.428061 | 8_3:-12227062 | Msa1277090:CDS |
| ATGAAATCTCTTGTATTGAA+TGG | 0.431267 | 8_3:-12227548 | Msa1277090:CDS |
| TCTCTTGTATTGAATGGAAA+GGG | 0.437349 | 8_3:-12227542 | Msa1277090:CDS |
| TTATGAAGTTGAACTTGGAT+TGG | 0.444332 | 8_3:-12227032 | Msa1277090:CDS |
| TGTAGAGGAAGCTAGTGCTT+GGG | 0.456051 | 8_3:+12227613 | None:intergenic |
| TACAAGAGATTTCATCCAAA+GGG | 0.460680 | 8_3:+12227556 | None:intergenic |
| TCTATATGCAATTTGACCAT+TGG | 0.471133 | 8_3:+12227502 | None:intergenic |
| TCAAGTTATGAAGTTGAACT+TGG | 0.473959 | 8_3:-12227037 | Msa1277090:CDS |
| AAACAATGATTTGAATCTTG+TGG | 0.482400 | 8_3:-12226646 | Msa1277090:three_prime_UTR |
| TTCTGGTCGTTCCTTGTCGC+CGG | 0.485881 | 8_3:+12227109 | None:intergenic |
| AAGGGTGAAAGTCTCTTGCT+TGG | 0.503462 | 8_3:+12227574 | None:intergenic |
| ATCTCTTGTATTGAATGGAA+AGG | 0.536878 | 8_3:-12227543 | Msa1277090:CDS |
| TTGTAGAGGAAGCTAGTGCT+TGG | 0.543990 | 8_3:+12227612 | None:intergenic |
| AGTGAAATTGCAAGTTGTAG+AGG | 0.544457 | 8_3:+12227598 | None:intergenic |
| TGCAGCAATATAAGTTGTCT+AGG | 0.546244 | 8_3:-12227153 | Msa1277090:intron |
| TAGAGATCAAGTTCATCTCA+TGG | 0.549861 | 8_3:-12227456 | Msa1277090:CDS |
| AAAGGACCATGCTTTCGAGT+TGG | 0.581337 | 8_3:-12227088 | Msa1277090:CDS |
| TGTACCGTCTTTGATTCCAA+TGG | 0.584212 | 8_3:-12227518 | Msa1277090:CDS |
| AGGAGAAAGAAGTCAACTTG+TGG | 0.584551 | 8_3:-12226810 | Msa1277090:CDS |
| ATACAAGAGATTTCATCCAA+AGG | 0.591425 | 8_3:+12227555 | None:intergenic |
| TTGACCATTGGAATCAAAGA+CGG | 0.601051 | 8_3:+12227514 | None:intergenic |
| GCGACAAGGAACGACCAGAA+AGG | 0.601912 | 8_3:-12227106 | Msa1277090:CDS |
| GTTACAAGCTTCCGGCGACA+AGG | 0.606422 | 8_3:-12227120 | Msa1277090:CDS |
| AAATGGAGTGATAGTTGCAG+AGG | 0.607549 | 8_3:-12226939 | Msa1277090:intron |
| GTAGAGGAAGCTAGTGCTTG+GGG | 0.609260 | 8_3:+12227614 | None:intergenic |
| CTCTTGTATTGAATGGAAAG+GGG | 0.645005 | 8_3:-12227541 | Msa1277090:CDS |
| GTTCATCTCATGGATCAAAG+AGG | 0.650133 | 8_3:-12227446 | Msa1277090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTCTATTTTATAATTATA+TGG | + | chr8_3:12227280-12227299 | None:intergenic | 10.0% |
| !! | TAAATACATGTATTAATTTA+TGG | - | chr8_3:12227423-12227442 | Msa1277090:CDS | 10.0% |
| !!! | TAAAATGTAATTAAGTATTT+TGG | - | chr8_3:12227587-12227606 | Msa1277090:CDS | 10.0% |
| !!! | CTTTCTATTTTATAATTATA+TGG | + | chr8_3:12227280-12227299 | None:intergenic | 10.0% |
| !! | TAAATACATGTATTAATTTA+TGG | - | chr8_3:12227423-12227442 | Msa1277090:CDS | 10.0% |
| !!! | TAAAATGTAATTAAGTATTT+TGG | - | chr8_3:12227587-12227606 | Msa1277090:CDS | 10.0% |
| !! | TTTGTTTACTATACTTAAAA+AGG | - | chr8_3:12226858-12226877 | Msa1277090:intron | 15.0% |
| !!! | CTATTTTATAATTATATGGT+TGG | + | chr8_3:12227276-12227295 | None:intergenic | 15.0% |
| !! | TTTGTTTACTATACTTAAAA+AGG | - | chr8_3:12226858-12226877 | Msa1277090:intron | 15.0% |
| !!! | CTATTTTATAATTATATGGT+TGG | + | chr8_3:12227276-12227295 | None:intergenic | 15.0% |
| !! | ATTAGAGAAAGATCAATATT+TGG | + | chr8_3:12227531-12227550 | None:intergenic | 20.0% |
| !! | TATTGATCTTTCTCTAATTA+TGG | - | chr8_3:12227533-12227552 | Msa1277090:CDS | 20.0% |
| !! | ATTGATCTTTCTCTAATTAT+GGG | - | chr8_3:12227534-12227553 | Msa1277090:CDS | 20.0% |
| !! | ATTAGAGAAAGATCAATATT+TGG | + | chr8_3:12227531-12227550 | None:intergenic | 20.0% |
| !! | TATTGATCTTTCTCTAATTA+TGG | - | chr8_3:12227533-12227552 | Msa1277090:CDS | 20.0% |
| !! | ATTGATCTTTCTCTAATTAT+GGG | - | chr8_3:12227534-12227553 | Msa1277090:CDS | 20.0% |
| ! | ATGAAATCTCTTGTATTGAA+TGG | - | chr8_3:12226727-12226746 | Msa1277090:CDS | 25.0% |
| ! | TACAAACTTTGCAAGTTTAT+AGG | + | chr8_3:12226915-12226934 | None:intergenic | 25.0% |
| !! | AATATAAGTTGTCTAGGTTT+TGG | - | chr8_3:12227128-12227147 | Msa1277090:CDS | 25.0% |
| !! | ATATAAGTTGTCTAGGTTTT+GGG | - | chr8_3:12227129-12227148 | Msa1277090:CDS | 25.0% |
| ! | AAACATATAGCATCTCTAAA+TGG | - | chr8_3:12227212-12227231 | Msa1277090:intron | 25.0% |
| ! | AACATATAGCATCTCTAAAT+GGG | - | chr8_3:12227213-12227232 | Msa1277090:intron | 25.0% |
| ! | TGCAAAATATTGGACAAAAA+TGG | - | chr8_3:12227319-12227338 | Msa1277090:intron | 25.0% |
| ! | AAACAATGATTTGAATCTTG+TGG | - | chr8_3:12227629-12227648 | Msa1277090:CDS | 25.0% |
| ! | ATGAAATCTCTTGTATTGAA+TGG | - | chr8_3:12226727-12226746 | Msa1277090:CDS | 25.0% |
| ! | TACAAACTTTGCAAGTTTAT+AGG | + | chr8_3:12226915-12226934 | None:intergenic | 25.0% |
| !! | AATATAAGTTGTCTAGGTTT+TGG | - | chr8_3:12227128-12227147 | Msa1277090:CDS | 25.0% |
| !! | ATATAAGTTGTCTAGGTTTT+GGG | - | chr8_3:12227129-12227148 | Msa1277090:CDS | 25.0% |
| ! | AAACATATAGCATCTCTAAA+TGG | - | chr8_3:12227212-12227231 | Msa1277090:intron | 25.0% |
| ! | AACATATAGCATCTCTAAAT+GGG | - | chr8_3:12227213-12227232 | Msa1277090:intron | 25.0% |
| ! | TGCAAAATATTGGACAAAAA+TGG | - | chr8_3:12227319-12227338 | Msa1277090:intron | 25.0% |
| TACAAGAGATTTCATCCAAA+GGG | + | chr8_3:12226722-12226741 | None:intergenic | 30.0% | |
| ATACAAGAGATTTCATCCAA+AGG | + | chr8_3:12226723-12226742 | None:intergenic | 30.0% | |
| ATCTCTTGTATTGAATGGAA+AGG | - | chr8_3:12226732-12226751 | Msa1277090:CDS | 30.0% | |
| TCTCTTGTATTGAATGGAAA+GGG | - | chr8_3:12226733-12226752 | Msa1277090:CDS | 30.0% | |
| TCTATATGCAATTTGACCAT+TGG | + | chr8_3:12226776-12226795 | None:intergenic | 30.0% | |
| TCAAGTTATGAAGTTGAACT+TGG | - | chr8_3:12227238-12227257 | Msa1277090:intron | 30.0% | |
| TTATGAAGTTGAACTTGGAT+TGG | - | chr8_3:12227243-12227262 | Msa1277090:intron | 30.0% | |
| ! | TCAACTTGTGGAATTGATTT+AGG | - | chr8_3:12227477-12227496 | Msa1277090:CDS | 30.0% |
| TACAAGAGATTTCATCCAAA+GGG | + | chr8_3:12226722-12226741 | None:intergenic | 30.0% | |
| ATACAAGAGATTTCATCCAA+AGG | + | chr8_3:12226723-12226742 | None:intergenic | 30.0% | |
| ATCTCTTGTATTGAATGGAA+AGG | - | chr8_3:12226732-12226751 | Msa1277090:CDS | 30.0% | |
| TCTCTTGTATTGAATGGAAA+GGG | - | chr8_3:12226733-12226752 | Msa1277090:CDS | 30.0% | |
| TCTATATGCAATTTGACCAT+TGG | + | chr8_3:12226776-12226795 | None:intergenic | 30.0% | |
| TCAAGTTATGAAGTTGAACT+TGG | - | chr8_3:12227238-12227257 | Msa1277090:intron | 30.0% | |
| TTATGAAGTTGAACTTGGAT+TGG | - | chr8_3:12227243-12227262 | Msa1277090:intron | 30.0% | |
| ! | TCAACTTGTGGAATTGATTT+AGG | - | chr8_3:12227477-12227496 | Msa1277090:CDS | 30.0% |
| AGTGAAATTGCAAGTTGTAG+AGG | + | chr8_3:12226680-12226699 | None:intergenic | 35.0% | |
| CTCTTGTATTGAATGGAAAG+GGG | - | chr8_3:12226734-12226753 | Msa1277090:CDS | 35.0% | |
| TTGACCATTGGAATCAAAGA+CGG | + | chr8_3:12226764-12226783 | None:intergenic | 35.0% | |
| TAGAGATCAAGTTCATCTCA+TGG | - | chr8_3:12226819-12226838 | Msa1277090:intron | 35.0% | |
| AAGTTTGTACAACACGATTG+TGG | - | chr8_3:12226926-12226945 | Msa1277090:intron | 35.0% | |
| TGATAAAATAACTGACGTCG+CGG | + | chr8_3:12226952-12226971 | None:intergenic | 35.0% | |
| !! | CGACGTCAGTTATTTTATCA+CGG | - | chr8_3:12226952-12226971 | Msa1277090:CDS | 35.0% |
| TGCAGCAATATAAGTTGTCT+AGG | - | chr8_3:12227122-12227141 | Msa1277090:CDS | 35.0% | |
| ! | TTGTCCAATATTTTGCAAGC+TGG | + | chr8_3:12227316-12227335 | None:intergenic | 35.0% |
| !!! | GTTTTTTCTATGAGCAGCTA+AGG | - | chr8_3:12227445-12227464 | Msa1277090:CDS | 35.0% |
| ! | AGGAGATGATGTTTTCACAA+TGG | - | chr8_3:12227497-12227516 | Msa1277090:CDS | 35.0% |
| ! | AGATGATGTTTTCACAATGG+TGG | - | chr8_3:12227500-12227519 | Msa1277090:CDS | 35.0% |
| AGTGAAATTGCAAGTTGTAG+AGG | + | chr8_3:12226680-12226699 | None:intergenic | 35.0% | |
| CTCTTGTATTGAATGGAAAG+GGG | - | chr8_3:12226734-12226753 | Msa1277090:CDS | 35.0% | |
| TTGACCATTGGAATCAAAGA+CGG | + | chr8_3:12226764-12226783 | None:intergenic | 35.0% | |
| TAGAGATCAAGTTCATCTCA+TGG | - | chr8_3:12226819-12226838 | Msa1277090:intron | 35.0% | |
| AAGTTTGTACAACACGATTG+TGG | - | chr8_3:12226926-12226945 | Msa1277090:intron | 35.0% | |
| TGATAAAATAACTGACGTCG+CGG | + | chr8_3:12226952-12226971 | None:intergenic | 35.0% | |
| !! | CGACGTCAGTTATTTTATCA+CGG | - | chr8_3:12226952-12226971 | Msa1277090:CDS | 35.0% |
| TGCAGCAATATAAGTTGTCT+AGG | - | chr8_3:12227122-12227141 | Msa1277090:CDS | 35.0% | |
| ! | TTGTCCAATATTTTGCAAGC+TGG | + | chr8_3:12227316-12227335 | None:intergenic | 35.0% |
| !!! | GTTTTTTCTATGAGCAGCTA+AGG | - | chr8_3:12227445-12227464 | Msa1277090:CDS | 35.0% |
| ! | AGGAGATGATGTTTTCACAA+TGG | - | chr8_3:12227497-12227516 | Msa1277090:CDS | 35.0% |
| ! | AGATGATGTTTTCACAATGG+TGG | - | chr8_3:12227500-12227519 | Msa1277090:CDS | 35.0% |
| TGTACCGTCTTTGATTCCAA+TGG | - | chr8_3:12226757-12226776 | Msa1277090:CDS | 40.0% | |
| GTTCATCTCATGGATCAAAG+AGG | - | chr8_3:12226829-12226848 | Msa1277090:intron | 40.0% | |
| !!! | AAGTTGTCTAGGTTTTGGGA+AGG | - | chr8_3:12227133-12227152 | Msa1277090:CDS | 40.0% |
| ! | GTTTTACCAACTCGAAAGCA+TGG | + | chr8_3:12227196-12227215 | None:intergenic | 40.0% |
| CAAGCCAGCTTGCAAAATAT+TGG | - | chr8_3:12227309-12227328 | Msa1277090:intron | 40.0% | |
| AAATGGAGTGATAGTTGCAG+AGG | - | chr8_3:12227336-12227355 | Msa1277090:intron | 40.0% | |
| AGGAGAAAGAAGTCAACTTG+TGG | - | chr8_3:12227465-12227484 | Msa1277090:CDS | 40.0% | |
| ! | TGATGTTTTCACAATGGTGG+TGG | - | chr8_3:12227503-12227522 | Msa1277090:CDS | 40.0% |
| TGTACCGTCTTTGATTCCAA+TGG | - | chr8_3:12226757-12226776 | Msa1277090:CDS | 40.0% | |
| GTTCATCTCATGGATCAAAG+AGG | - | chr8_3:12226829-12226848 | Msa1277090:intron | 40.0% | |
| !!! | AAGTTGTCTAGGTTTTGGGA+AGG | - | chr8_3:12227133-12227152 | Msa1277090:CDS | 40.0% |
| ! | GTTTTACCAACTCGAAAGCA+TGG | + | chr8_3:12227196-12227215 | None:intergenic | 40.0% |
| CAAGCCAGCTTGCAAAATAT+TGG | - | chr8_3:12227309-12227328 | Msa1277090:intron | 40.0% | |
| AAATGGAGTGATAGTTGCAG+AGG | - | chr8_3:12227336-12227355 | Msa1277090:intron | 40.0% | |
| AGGAGAAAGAAGTCAACTTG+TGG | - | chr8_3:12227465-12227484 | Msa1277090:CDS | 40.0% | |
| ! | TGATGTTTTCACAATGGTGG+TGG | - | chr8_3:12227503-12227522 | Msa1277090:CDS | 40.0% |
| TGTAGAGGAAGCTAGTGCTT+GGG | + | chr8_3:12226665-12226684 | None:intergenic | 45.0% | |
| TTGTAGAGGAAGCTAGTGCT+TGG | + | chr8_3:12226666-12226685 | None:intergenic | 45.0% | |
| AAGGGTGAAAGTCTCTTGCT+TGG | + | chr8_3:12226704-12226723 | None:intergenic | 45.0% | |
| AGCAAGAGACTTTCACCCTT+TGG | - | chr8_3:12226704-12226723 | Msa1277090:CDS | 45.0% | |
| GACTGATGTAGCTGCAATTG+TGG | + | chr8_3:12226978-12226997 | None:intergenic | 45.0% | |
| TTGGGAAGGTTACAAGCTTC+CGG | - | chr8_3:12227147-12227166 | Msa1277090:CDS | 45.0% | |
| ! | AAAGGACCATGCTTTCGAGT+TGG | - | chr8_3:12227187-12227206 | Msa1277090:intron | 45.0% |
| TGTAGAGGAAGCTAGTGCTT+GGG | + | chr8_3:12226665-12226684 | None:intergenic | 45.0% | |
| TTGTAGAGGAAGCTAGTGCT+TGG | + | chr8_3:12226666-12226685 | None:intergenic | 45.0% | |
| AAGGGTGAAAGTCTCTTGCT+TGG | + | chr8_3:12226704-12226723 | None:intergenic | 45.0% | |
| AGCAAGAGACTTTCACCCTT+TGG | - | chr8_3:12226704-12226723 | Msa1277090:CDS | 45.0% | |
| GACTGATGTAGCTGCAATTG+TGG | + | chr8_3:12226978-12226997 | None:intergenic | 45.0% | |
| TTGGGAAGGTTACAAGCTTC+CGG | - | chr8_3:12227147-12227166 | Msa1277090:CDS | 45.0% | |
| ! | AAAGGACCATGCTTTCGAGT+TGG | - | chr8_3:12227187-12227206 | Msa1277090:intron | 45.0% |
| GTAGAGGAAGCTAGTGCTTG+GGG | + | chr8_3:12226664-12226683 | None:intergenic | 50.0% | |
| ! | CTCGAAAGCATGGTCCTTTC+TGG | + | chr8_3:12227186-12227205 | None:intergenic | 50.0% |
| GTAGAGGAAGCTAGTGCTTG+GGG | + | chr8_3:12226664-12226683 | None:intergenic | 50.0% | |
| ! | CTCGAAAGCATGGTCCTTTC+TGG | + | chr8_3:12227186-12227205 | None:intergenic | 50.0% |
| GTTACAAGCTTCCGGCGACA+AGG | - | chr8_3:12227155-12227174 | Msa1277090:intron | 55.0% | |
| TTCTGGTCGTTCCTTGTCGC+CGG | + | chr8_3:12227169-12227188 | None:intergenic | 55.0% | |
| GCGACAAGGAACGACCAGAA+AGG | - | chr8_3:12227169-12227188 | Msa1277090:intron | 55.0% | |
| GTTACAAGCTTCCGGCGACA+AGG | - | chr8_3:12227155-12227174 | Msa1277090:intron | 55.0% | |
| TTCTGGTCGTTCCTTGTCGC+CGG | + | chr8_3:12227169-12227188 | None:intergenic | 55.0% | |
| GCGACAAGGAACGACCAGAA+AGG | - | chr8_3:12227169-12227188 | Msa1277090:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 12226646 | 12227651 | 12226646 | ID=Msa1277090;Name=Msa1277090 |
| chr8_3 | mRNA | 12226646 | 12227651 | 12226646 | ID=Msa1277090-mRNA-1;Parent=Msa1277090;Name=Msa1277090-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.66|1|1|1|3|55|199 |
| chr8_3 | exon | 12226646 | 12226835 | 12226646 | ID=Msa1277090-mRNA-1:exon:4892;Parent=Msa1277090-mRNA-1 |
| chr8_3 | exon | 12226940 | 12227170 | 12226940 | ID=Msa1277090-mRNA-1:exon:4891;Parent=Msa1277090-mRNA-1 |
| chr8_3 | exon | 12227418 | 12227651 | 12227418 | ID=Msa1277090-mRNA-1:exon:4890;Parent=Msa1277090-mRNA-1 |
| chr8_3 | CDS | 12227418 | 12227651 | 12227418 | ID=Msa1277090-mRNA-1:cds;Parent=Msa1277090-mRNA-1 |
| chr8_3 | CDS | 12226940 | 12227170 | 12226940 | ID=Msa1277090-mRNA-1:cds;Parent=Msa1277090-mRNA-1 |
| chr8_3 | CDS | 12226701 | 12226835 | 12226701 | ID=Msa1277090-mRNA-1:cds;Parent=Msa1277090-mRNA-1 |
| chr8_3 | three_prime_UTR | 12226646 | 12226700 | 12226646 | ID=Msa1277090-mRNA-1:three_prime_utr;Parent=Msa1277090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
