Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175430 | XP_003627474.1 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175430 | sp|Q84WU0|OFUT5_ARATH | 60.424 | 566 | 193 | 8 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036890 | Msa1175430 | 0.807903 | 4.026740e-50 | -8.615850e-47 |
| Msa0084970 | Msa1175430 | 0.812380 | 4.365630e-51 | -8.615850e-47 |
| Msa0640840 | Msa1175430 | 0.801731 | 7.839761e-49 | -8.615850e-47 |
| Msa1085330 | Msa1175430 | 0.800725 | 1.259725e-48 | -8.615850e-47 |
| Msa1175430 | Msa1277390 | 0.816701 | 4.828048e-52 | -8.615850e-47 |
| Msa1175430 | Msa1459460 | 0.803919 | 2.770254e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175430 | MtrunA17_Chr8g0345431 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1117 |
| Msa1175430 | MtrunA17_Chr2g0277611 | 80.952 | 105 | 16 | 2 | 261 | 364 | 3 | 104 | 1.54e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175430 | AT1G17270.2 | 60.424 | 566 | 193 | 8 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Msa1175430 | AT1G17270.1 | 60.424 | 566 | 193 | 8 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Msa1175430 | AT5G50420.1 | 60.457 | 569 | 190 | 9 | 3 | 542 | 4 | 566 | 0.0 | 672 |
| Msa1175430 | AT1G53770.1 | 59.253 | 562 | 188 | 10 | 6 | 542 | 18 | 563 | 0.0 | 660 |
| Msa1175430 | AT1G53770.2 | 55.333 | 600 | 189 | 11 | 6 | 542 | 18 | 601 | 0.0 | 638 |
Find 161 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATATTAATAAATGTTT+AGG | 0.213341 | 8_1:-6734957 | Msa1175430:CDS |
| TTAGTTGCTATTTGTGTTTC+CGG | 0.216242 | 8_1:-6735101 | Msa1175430:CDS |
| TTTGCCTCAACCTTGTTATT+TGG | 0.238205 | 8_1:-6734850 | Msa1175430:CDS |
| GAATGTAGAGGGAGGTGTTC+GGG | 0.272733 | 8_1:+6735622 | None:intergenic |
| ATTGATCCTGAATTCAATTT+CGG | 0.284521 | 8_1:-6735227 | Msa1175430:CDS |
| GGCGATTCTGAACAGGGTTT+TGG | 0.289374 | 8_1:-6735030 | Msa1175430:CDS |
| ATCATATTAATAAATGTTTA+GGG | 0.291964 | 8_1:-6734956 | Msa1175430:CDS |
| TATTGAATGGAATCCTAAAA+AGG | 0.306443 | 8_1:-6735132 | Msa1175430:CDS |
| GAATTTCCGAAATTGAATTC+AGG | 0.320671 | 8_1:+6735221 | None:intergenic |
| TTGTGGAGGGTTGGTGGATG+AGG | 0.325976 | 8_1:+6735648 | None:intergenic |
| TCTTCAATTAGCTTAGGGTT+AGG | 0.344093 | 8_1:+6735335 | None:intergenic |
| TGAGTAAACCTAAGGCTGTT+TGG | 0.347034 | 8_1:-6734785 | Msa1175430:CDS |
| GAGGTAAATGGCGCGTAATT+CGG | 0.350363 | 8_1:+6735418 | None:intergenic |
| AATATGAAAGTGAGTGAGTT+TGG | 0.364604 | 8_1:+6735756 | None:intergenic |
| GAGTAAACCTAAGGCTGTTT+GGG | 0.367851 | 8_1:-6734784 | Msa1175430:CDS |
| GAAAACTGTTCAGGATGTTA+TGG | 0.370308 | 8_1:-6734733 | Msa1175430:CDS |
| CTTCAATTAGCTTAGGGTTA+GGG | 0.381882 | 8_1:+6735336 | None:intergenic |
| GTGAAGTAACGGCGGAGATT+GGG | 0.389076 | 8_1:+6735485 | None:intergenic |
| GCTGAGCAGTAAGCAAAATA+AGG | 0.389924 | 8_1:+6734580 | None:intergenic |
| TTCTTATGATGATGATGTTA+TGG | 0.392013 | 8_1:-6734703 | Msa1175430:CDS |
| TTGAAGAAGTTGGATGGGTT+GGG | 0.392285 | 8_1:-6734816 | Msa1175430:CDS |
| CGATTTATTCAGACATTCCT+TGG | 0.392434 | 8_1:-6734558 | Msa1175430:CDS |
| GAAATTCAAATTTCAATGTT+GGG | 0.393322 | 8_1:-6735205 | Msa1175430:CDS |
| TCATCCTCCCAAACAGCCTT+AGG | 0.396707 | 8_1:+6734777 | None:intergenic |
| AAGATCTCAATTCCCGATTC+CGG | 0.397943 | 8_1:-6735592 | Msa1175430:CDS |
| TCCAAAGAAGAAAACTGTTC+AGG | 0.400163 | 8_1:-6734742 | Msa1175430:CDS |
| CCATTTGTTGAACCTGTGTT+TGG | 0.403712 | 8_1:-6735911 | Msa1175430:five_prime_UTR |
| AGAAGAGGAAGAGGAGGAGA+AGG | 0.404175 | 8_1:+6735516 | None:intergenic |
| TTCAGATCTTCAATTAGCTT+AGG | 0.405765 | 8_1:+6735329 | None:intergenic |
| GGAAATTCAAATTTCAATGT+TGG | 0.407138 | 8_1:-6735206 | Msa1175430:CDS |
| TGCCACAACTGTTATTGATA+AGG | 0.407800 | 8_1:+6732043 | None:intergenic |
| AGTCTGTTCCACTTGTAATT+CGG | 0.409574 | 8_1:-6733837 | Msa1175430:CDS |
| GGTGAAGTAACGGCGGAGAT+TGG | 0.411553 | 8_1:+6735484 | None:intergenic |
| CCAAACACAGGTTCAACAAA+TGG | 0.421860 | 8_1:+6735911 | None:intergenic |
| GGAATGTAGAGGGAGGTGTT+CGG | 0.421929 | 8_1:+6735621 | None:intergenic |
| GTTGAAGAAGTTGGATGGGT+TGG | 0.422746 | 8_1:-6734817 | Msa1175430:CDS |
| TTCTTTCATTCGATCGGAGA+TGG | 0.424663 | 8_1:+6735442 | None:intergenic |
| TGATGAGAGGTTGAAGAAGT+TGG | 0.429311 | 8_1:-6734826 | Msa1175430:CDS |
| CTGTTGAATCCACATAGAAC+AGG | 0.430746 | 8_1:-6735257 | Msa1175430:CDS |
| TCAGATCTTCAATTAGCTTA+GGG | 0.433199 | 8_1:+6735330 | None:intergenic |
| AGGGTTGGTGGATGAGGTTG+TGG | 0.433360 | 8_1:+6735654 | None:intergenic |
| TGATAATCAACTTTAGAACT+TGG | 0.433498 | 8_1:+6735002 | None:intergenic |
| TTGTTGGCGCAAGAGGTAAA+TGG | 0.433822 | 8_1:+6735406 | None:intergenic |
| TGAAATTGACGCGCCGGAAT+CGG | 0.434406 | 8_1:+6735579 | None:intergenic |
| GAGGAGAAGGAGAAGGAGAA+TGG | 0.435348 | 8_1:+6735529 | None:intergenic |
| AATGGGATGCTTTGTTGTAC+AGG | 0.436207 | 8_1:-6733792 | Msa1175430:CDS |
| TTGAGAGACGTTGTTGTTGT+TGG | 0.437985 | 8_1:+6735390 | None:intergenic |
| CAATCTGCTGCTTGAGGGAT+GGG | 0.440779 | 8_1:+6733967 | None:intergenic |
| GAAATTGACGCGCCGGAATC+GGG | 0.444155 | 8_1:+6735580 | None:intergenic |
| GAGTGAGTGAGGGAGTGATT+TGG | 0.457122 | 8_1:+6735807 | None:intergenic |
| GATGCAGCTGAAAGTGAAAC+TGG | 0.457579 | 8_1:-6733892 | Msa1175430:CDS |
| TGGTAGGGCGGTCAAGTGTC+TGG | 0.459906 | 8_1:+6732272 | None:intergenic |
| ACAACTGTTATTGATAAGGT+TGG | 0.460195 | 8_1:+6732047 | None:intergenic |
| ACTGTTATGTCACAAAATTC+AGG | 0.460432 | 8_1:+6732111 | None:intergenic |
| GGACTGAGAAGAAGAGGAAG+AGG | 0.460792 | 8_1:+6735507 | None:intergenic |
| ATCCGTAGAAAGATATATGA+TGG | 0.464180 | 8_1:+6733912 | None:intergenic |
| TTGTACAGGCATCATATTGA+GGG | 0.469353 | 8_1:-6733778 | Msa1175430:CDS |
| TTCGGATTCTTTCATTCGAT+CGG | 0.469561 | 8_1:+6735436 | None:intergenic |
| AGTGAGTTTGGTGAATCGTT+AGG | 0.474226 | 8_1:+6735768 | None:intergenic |
| GCATGAATGGGTTATGCAAC+CGG | 0.476154 | 8_1:-6734649 | Msa1175430:CDS |
| GGAAGAGGAGGAGAAGGAGA+AGG | 0.482742 | 8_1:+6735522 | None:intergenic |
| CTTGCGGCTGAGAAAGGACT+GGG | 0.485227 | 8_1:-6732408 | Msa1175430:CDS |
| ATGCTGAAGTGGAGCATGAA+TGG | 0.486444 | 8_1:-6734662 | Msa1175430:CDS |
| GAGGAGGAATCCATTGGTAT+AGG | 0.490868 | 8_1:+6735695 | None:intergenic |
| CAAGATGTCTTCAGTGAAAG+TGG | 0.493024 | 8_1:+6732427 | None:intergenic |
| ACTGAAGGTGGAAGCTATGT+TGG | 0.493826 | 8_1:-6732498 | Msa1175430:intron |
| CTGAGAAGAAGAGGAAGAGG+AGG | 0.493943 | 8_1:+6735510 | None:intergenic |
| CACTTGTAATTCGGCCAGCT+CGG | 0.495746 | 8_1:-6733828 | Msa1175430:CDS |
| CAAAGAGGAAAACTATTGAA+TGG | 0.498658 | 8_1:-6735145 | Msa1175430:CDS |
| GTCTTGCATTGATGAGCAAT+CGG | 0.499882 | 8_1:+6734621 | None:intergenic |
| AGCGTGTTCATTGGAGCACC+TGG | 0.501788 | 8_1:-6732452 | Msa1175430:CDS |
| AGTAAGCAAAATAAGGCGAT+TGG | 0.502278 | 8_1:+6734587 | None:intergenic |
| AGACATCTTGCGGCTGAGAA+AGG | 0.504340 | 8_1:-6732414 | Msa1175430:CDS |
| ATTACATTCCCTGTTCTATG+TGG | 0.511766 | 8_1:+6735248 | None:intergenic |
| CAGTCACTGATTGTGCTGAA+TGG | 0.512195 | 8_1:-6733862 | Msa1175430:CDS |
| TGCTGAAGTGGAGCATGAAT+GGG | 0.512626 | 8_1:-6734661 | Msa1175430:CDS |
| GTAAGCAAAATAAGGCGATT+GGG | 0.515776 | 8_1:+6734588 | None:intergenic |
| GTTGTTGTTGTTGGCGCAAG+AGG | 0.519086 | 8_1:+6735399 | None:intergenic |
| CATTCGATCGGAGATGGAGT+CGG | 0.521245 | 8_1:+6735448 | None:intergenic |
| TTGATCAGAGTTTGTCAAAG+AGG | 0.522693 | 8_1:-6735160 | Msa1175430:CDS |
| AATACAATCAAACCTATGGT+AGG | 0.524008 | 8_1:+6732256 | None:intergenic |
| CAAATGATTCGACATTTGAC+CGG | 0.524066 | 8_1:+6735082 | None:intergenic |
| TTATTCAGACATTCCTTGGA+AGG | 0.535294 | 8_1:-6734554 | Msa1175430:CDS |
| AAGATGCAATCTGCTGCTTG+AGG | 0.535947 | 8_1:+6733961 | None:intergenic |
| GCAATCTGCTGCTTGAGGGA+TGG | 0.535959 | 8_1:+6733966 | None:intergenic |
| AGATGCAATCTGCTGCTTGA+GGG | 0.537297 | 8_1:+6733962 | None:intergenic |
| TTTCGCGGCGATTCTGAACA+GGG | 0.537645 | 8_1:-6735036 | Msa1175430:CDS |
| AGCAGCAGATTGCATCTTGA+GGG | 0.538084 | 8_1:-6733956 | Msa1175430:CDS |
| GTGGTGGTCGTCGTCTTCGT+CGG | 0.541192 | 8_1:+6735673 | None:intergenic |
| GTCGTCGTCTTCGTCGGAGG+AGG | 0.543349 | 8_1:+6735679 | None:intergenic |
| TCATATTGAGGGAGATTCAC+AGG | 0.543571 | 8_1:-6733767 | Msa1175430:intron |
| CAATATTCGGTTCTTCACCT+TGG | 0.544512 | 8_1:+6732354 | None:intergenic |
| ACACTTGACCGCCCTACCAT+AGG | 0.544602 | 8_1:-6732268 | Msa1175430:three_prime_UTR |
| GTGAGTTTGGTGAATCGTTA+GGG | 0.544769 | 8_1:+6735769 | None:intergenic |
| GGCTCACTCACCTATACCAA+TGG | 0.546255 | 8_1:-6735705 | Msa1175430:exon |
| GTTGTACAGGCATCATATTG+AGG | 0.546833 | 8_1:-6733779 | Msa1175430:CDS |
| TAAGGCTGTTTGGGAGGATG+AGG | 0.546866 | 8_1:-6734775 | Msa1175430:CDS |
| CTCTCATCATCCAAATAACA+AGG | 0.547604 | 8_1:+6734840 | None:intergenic |
| ACCCATCATATATCTTTCTA+CGG | 0.548743 | 8_1:-6733914 | Msa1175430:CDS |
| GATGGAGTCGGAGGTGAATG+AGG | 0.551470 | 8_1:+6735460 | None:intergenic |
| AATCGTTAGGGTGACTCGGT+TGG | 0.551583 | 8_1:+6735781 | None:intergenic |
| GATGATGATGTTATGGCGAT+TGG | 0.552086 | 8_1:-6734696 | Msa1175430:CDS |
| TCTTGCGGCTGAGAAAGGAC+TGG | 0.552823 | 8_1:-6732409 | Msa1175430:CDS |
| GGTGAATCGTTAGGGTGACT+CGG | 0.555908 | 8_1:+6735777 | None:intergenic |
| TTTGCATATGAGTAAACCTA+AGG | 0.562855 | 8_1:-6734793 | Msa1175430:CDS |
| AGAGGTTGAAGAAGTTGGAT+GGG | 0.564955 | 8_1:-6734821 | Msa1175430:CDS |
| TGATGAGCAATCGGTCCACC+CGG | 0.566103 | 8_1:+6734630 | None:intergenic |
| CATGAATGGGTTATGCAACC+GGG | 0.566495 | 8_1:-6734648 | Msa1175430:CDS |
| CTGATCGGAAGAGTTGAAAA+CGG | 0.566837 | 8_1:+6735367 | None:intergenic |
| GCCATGTCTAGCGTGTTCAT+TGG | 0.568070 | 8_1:-6732461 | Msa1175430:CDS |
| AAGCAATGAAGTTCCTTCCA+AGG | 0.569377 | 8_1:+6734541 | None:intergenic |
| TCGGTTGGAGAGAGTGAGTG+AGG | 0.569623 | 8_1:+6735796 | None:intergenic |
| GAGAGGTTGAAGAAGTTGGA+TGG | 0.570927 | 8_1:-6734822 | Msa1175430:CDS |
| GCATCTTGAGGGTGATTGAG+AGG | 0.572158 | 8_1:-6733945 | Msa1175430:CDS |
| AATGTAGAGGGAGGTGTTCG+GGG | 0.572856 | 8_1:+6735623 | None:intergenic |
| AACCTTATCAATAACAGTTG+TGG | 0.572975 | 8_1:-6732045 | Msa1175430:three_prime_UTR |
| AAGATATATGATGGGTGCAT+CGG | 0.573461 | 8_1:+6733921 | None:intergenic |
| GATTGGGGACTGAGAAGAAG+AGG | 0.575965 | 8_1:+6735501 | None:intergenic |
| TGAAGTAACGGCGGAGATTG+GGG | 0.580373 | 8_1:+6735486 | None:intergenic |
| TCATCCAAATAACAAGGTTG+AGG | 0.580652 | 8_1:+6734846 | None:intergenic |
| TCTTCGACGTGGAATGTAGA+GGG | 0.580661 | 8_1:+6735611 | None:intergenic |
| ATACAATCAAACCTATGGTA+GGG | 0.582322 | 8_1:+6732257 | None:intergenic |
| AAGCAGCAGATTGCATCTTG+AGG | 0.583857 | 8_1:-6733957 | Msa1175430:CDS |
| CATCTTGAGGGTGATTGAGA+GGG | 0.588073 | 8_1:-6733944 | Msa1175430:CDS |
| GGAAGGTGAAATTGACGCGC+CGG | 0.588929 | 8_1:+6735573 | None:intergenic |
| TGAATGAGGTGGTGAAGTAA+CGG | 0.593061 | 8_1:+6735474 | None:intergenic |
| AAGTGTCTGGTCCTGAGCAA+CGG | 0.596203 | 8_1:+6732285 | None:intergenic |
| ATCTTCGACGTGGAATGTAG+AGG | 0.600566 | 8_1:+6735610 | None:intergenic |
| GTTGGTGGATGAGGTTGTGG+TGG | 0.603656 | 8_1:+6735657 | None:intergenic |
| TCCAATGAACACGCTAGACA+TGG | 0.603721 | 8_1:+6732460 | None:intergenic |
| CGGTTGGAGAGAGTGAGTGA+GGG | 0.605462 | 8_1:+6735797 | None:intergenic |
| GTGTCACTCACGCGCCGCCG+TGG | 0.608225 | 8_1:-6735726 | Msa1175430:five_prime_UTR |
| AATGACAATTTACCAAACAC+AGG | 0.608566 | 8_1:+6735899 | None:intergenic |
| TCTTCAGTGAAAGTGGAACC+AGG | 0.609539 | 8_1:+6732434 | None:intergenic |
| TGGTATAGGTGAGTGAGCCA+CGG | 0.611375 | 8_1:+6735709 | None:intergenic |
| TAAACCTAAGGCTGTTTGGG+AGG | 0.614046 | 8_1:-6734781 | Msa1175430:CDS |
| CTTGTTATTTGGATGATGAG+AGG | 0.615113 | 8_1:-6734839 | Msa1175430:CDS |
| TCCGTAGAAAGATATATGAT+GGG | 0.622070 | 8_1:+6733913 | None:intergenic |
| CTTTCACTGAAGACATCTTG+CGG | 0.622202 | 8_1:-6732424 | Msa1175430:CDS |
| GTGGTCGTCGTCTTCGTCGG+AGG | 0.625911 | 8_1:+6735676 | None:intergenic |
| ACGGCGGCGCGTGAGTGACA+CGG | 0.627850 | 8_1:+6735728 | None:intergenic |
| CGAGCTGGCCGAATTACAAG+TGG | 0.629533 | 8_1:+6733829 | None:intergenic |
| TCGTCGGAGGAGGAATCCAT+TGG | 0.632241 | 8_1:+6735689 | None:intergenic |
| AATCTGCTGCTTGAGGGATG+GGG | 0.632784 | 8_1:+6733968 | None:intergenic |
| TGTGATGAGTATCTTTGCCA+AGG | 0.635336 | 8_1:-6732371 | Msa1175430:CDS |
| GCAGAGTAGAGTGTAAGCAA+AGG | 0.645929 | 8_1:+6735844 | None:intergenic |
| GCAAAGGAGATTGAATGTGT+CGG | 0.654349 | 8_1:+6735860 | None:intergenic |
| TCGATCGGAGATGGAGTCGG+AGG | 0.656256 | 8_1:+6735451 | None:intergenic |
| ATGAAGATCGAAGATAATGA+CGG | 0.659935 | 8_1:-6732318 | Msa1175430:exon |
| TGTTGAATCCACATAGAACA+GGG | 0.688035 | 8_1:-6735256 | Msa1175430:CDS |
| TGAAGAACCGAATATTGTAG+CGG | 0.689587 | 8_1:-6732348 | Msa1175430:CDS |
| CAATCAAACCTATGGTAGGG+CGG | 0.689615 | 8_1:+6732260 | None:intergenic |
| GAATGGGTTATGCAACCGGG+TGG | 0.697233 | 8_1:-6734645 | Msa1175430:CDS |
| GGAGTCGGAGGTGAATGAGG+TGG | 0.703315 | 8_1:+6735463 | None:intergenic |
| TCGACGTGGAATGTAGAGGG+AGG | 0.708402 | 8_1:+6735614 | None:intergenic |
| TTTGGGAGGATGAGGATACG+AGG | 0.712720 | 8_1:-6734767 | Msa1175430:CDS |
| ATGAGGTGGTGAAGTAACGG+CGG | 0.721437 | 8_1:+6735477 | None:intergenic |
| TATAGGTGAGTGAGCCACGG+CGG | 0.722299 | 8_1:+6735712 | None:intergenic |
| TTGCGGCTGAGAAAGGACTG+GGG | 0.724371 | 8_1:-6732407 | Msa1175430:CDS |
| GGGAATTGAGATCTTCGACG+TGG | 0.734919 | 8_1:+6735600 | None:intergenic |
| GCGGCGCGTGAGTGACACGG+TGG | 0.780396 | 8_1:+6735731 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATTAATAAATGTTTA+GGG | - | chr8_1:6733010-6733029 | Msa1175430:intron | 10.0% |
| !! | TTCAAATTAAAAGAAAAAAT+GGG | + | chr8_1:6735897-6735916 | None:intergenic | 10.0% |
| !! | TTTCAAATTAAAAGAAAAAA+TGG | + | chr8_1:6735898-6735917 | None:intergenic | 10.0% |
| !!! | TAAATTGTCATTTTCATTTT+TGG | - | chr8_1:6732078-6732097 | Msa1175430:three_prime_UTR | 15.0% |
| !!! | ACTAAAAATTTATCCTTTTT+AGG | + | chr8_1:6732850-6732869 | None:intergenic | 15.0% |
| !! | GATCATATTAATAAATGTTT+AGG | - | chr8_1:6733009-6733028 | Msa1175430:intron | 15.0% |
| !!! | TTTAATTTCTCATAAGATTA+TGG | - | chr8_1:6733507-6733526 | Msa1175430:intron | 15.0% |
| !! | TTAATTTCTCATAAGATTAT+GGG | - | chr8_1:6733508-6733527 | Msa1175430:intron | 15.0% |
| !!! | AATCAGTATTTTGTAAATAA+AGG | + | chr8_1:6734431-6734450 | None:intergenic | 15.0% |
| !! | GAAATTCAAATTTCAATGTT+GGG | - | chr8_1:6732761-6732780 | Msa1175430:intron | 20.0% |
| !! | TAATTTCTCATAAGATTATG+GGG | - | chr8_1:6733509-6733528 | Msa1175430:intron | 20.0% |
| !! | ATTTACAAATGAAAGTTTCA+TGG | - | chr8_1:6734320-6734339 | Msa1175430:intron | 20.0% |
| !! | TTTACAAATGAAAGTTTCAT+GGG | - | chr8_1:6734321-6734340 | Msa1175430:intron | 20.0% |
| !! | TACTCTCTTTCAATTTATTT+CGG | - | chr8_1:6735420-6735439 | Msa1175430:CDS | 20.0% |
| ! | ATTGATCCTGAATTCAATTT+CGG | - | chr8_1:6732739-6732758 | Msa1175430:intron | 25.0% |
| ! | GGAAATTCAAATTTCAATGT+TGG | - | chr8_1:6732760-6732779 | Msa1175430:intron | 25.0% |
| ! | TATTGAATGGAATCCTAAAA+AGG | - | chr8_1:6732834-6732853 | Msa1175430:intron | 25.0% |
| !!! | TGATAATCAACTTTAGAACT+TGG | + | chr8_1:6732967-6732986 | None:intergenic | 25.0% |
| !! | TGAATTTTCGAATGTTAAGA+AGG | - | chr8_1:6733056-6733075 | Msa1175430:intron | 25.0% |
| !! | GAATTTTCGAATGTTAAGAA+GGG | - | chr8_1:6733057-6733076 | Msa1175430:intron | 25.0% |
| !! | TTCTTATGATGATGATGTTA+TGG | - | chr8_1:6733263-6733282 | Msa1175430:intron | 25.0% |
| ! | TAAACCAGAAAAAGGAATAA+AGG | + | chr8_1:6733491-6733510 | None:intergenic | 25.0% |
| ! | TGAGAAATTAAACCAGAAAA+AGG | + | chr8_1:6733499-6733518 | None:intergenic | 25.0% |
| ! | TTAATCTAACACATAGATTC+AGG | + | chr8_1:6733581-6733600 | None:intergenic | 25.0% |
| !!! | AGTTGTTTTGTTTCATTTCA+TGG | - | chr8_1:6733812-6733831 | Msa1175430:CDS | 25.0% |
| ! | CACATGAAAAAAAATAAGCA+AGG | + | chr8_1:6734237-6734256 | None:intergenic | 25.0% |
| ! | TTAAACTTAAATAGTGTACC+TGG | - | chr8_1:6734259-6734278 | Msa1175430:intron | 25.0% |
| ! | ATTCATTATGTGTCTATTCT+AGG | - | chr8_1:6734396-6734415 | Msa1175430:intron | 25.0% |
| ! | TTTGTAAATTGTAACAGAAG+AGG | + | chr8_1:6734488-6734507 | None:intergenic | 25.0% |
| ! | GAATTTATTGTTGTAAGTTC+TGG | - | chr8_1:6734571-6734590 | Msa1175430:CDS | 25.0% |
| ! | TACTAAGCTTCAAACTTAAA+AGG | + | chr8_1:6734631-6734650 | None:intergenic | 25.0% |
| !! | TGTTATAACATTTTACTGTC+AGG | - | chr8_1:6734683-6734702 | Msa1175430:CDS | 25.0% |
| !!! | GTGTTTACAAGTTGTTATTT+TGG | + | chr8_1:6735014-6735033 | None:intergenic | 25.0% |
| ! | ATATCAAACCAAATTTAGCA+GGG | + | chr8_1:6735131-6735150 | None:intergenic | 25.0% |
| ! | TATGAGCCTACAAAAAAAAT+CGG | + | chr8_1:6735164-6735183 | None:intergenic | 25.0% |
| ! | TGTCATAGTGGTTTAAAAAT+TGG | + | chr8_1:6735328-6735347 | None:intergenic | 25.0% |
| ! | TGACATAGTGGTTTAAAAAT+TGG | + | chr8_1:6735360-6735379 | None:intergenic | 25.0% |
| !! | TATGAATATTTTCACACTGA+AGG | - | chr8_1:6735453-6735472 | Msa1175430:CDS | 25.0% |
| ! | GAAAAATACAATCAAACCTA+TGG | + | chr8_1:6735717-6735736 | None:intergenic | 25.0% |
| AATGACAATTTACCAAACAC+AGG | + | chr8_1:6732070-6732089 | None:intergenic | 30.0% | |
| AATATGAAAGTGAGTGAGTT+TGG | + | chr8_1:6732213-6732232 | None:intergenic | 30.0% | |
| !!! | AATGTAGTGCTTTTTTTGGA+AGG | + | chr8_1:6732413-6732432 | None:intergenic | 30.0% |
| ! | TCAGATCTTCAATTAGCTTA+GGG | + | chr8_1:6732639-6732658 | None:intergenic | 30.0% |
| ! | TTCAGATCTTCAATTAGCTT+AGG | + | chr8_1:6732640-6732659 | None:intergenic | 30.0% |
| GAATTTCCGAAATTGAATTC+AGG | + | chr8_1:6732748-6732767 | None:intergenic | 30.0% | |
| CAAAGAGGAAAACTATTGAA+TGG | - | chr8_1:6732821-6732840 | Msa1175430:intron | 30.0% | |
| !! | TTAGTTGCTATTTGTGTTTC+CGG | - | chr8_1:6732865-6732884 | Msa1175430:intron | 30.0% |
| !! | AGAAAAGCATATGTTTTTCG+CGG | - | chr8_1:6732915-6732934 | Msa1175430:intron | 30.0% |
| TTTGCATATGAGTAAACCTA+AGG | - | chr8_1:6733173-6733192 | Msa1175430:intron | 30.0% | |
| !!! | TGATGTTTTTTATGCTGAAG+TGG | - | chr8_1:6733293-6733312 | Msa1175430:intron | 30.0% |
| ! | ACTTCATTGCTTTGCATTTT+CGG | - | chr8_1:6733436-6733455 | Msa1175430:intron | 30.0% |
| ! | ACTACCTTTATTCCTTTTTC+TGG | - | chr8_1:6733484-6733503 | Msa1175430:intron | 30.0% |
| ! | TGCTATTAAAGCTGATTCAA+CGG | + | chr8_1:6733644-6733663 | None:intergenic | 30.0% |
| TAGCAAACTTGAAATCAAAG+CGG | - | chr8_1:6733659-6733678 | Msa1175430:intron | 30.0% | |
| AGTCAACAACTCAAAATCTT+TGG | + | chr8_1:6733697-6733716 | None:intergenic | 30.0% | |
| TGTAAAAAGTTATGCATGCA+AGG | - | chr8_1:6733858-6733877 | Msa1175430:CDS | 30.0% | |
| AACATGAAAATGGACAAGTA+AGG | + | chr8_1:6733946-6733965 | None:intergenic | 30.0% | |
| CATTACTGCAAACATGAAAA+TGG | + | chr8_1:6733956-6733975 | None:intergenic | 30.0% | |
| ACCCATCATATATCTTTCTA+CGG | - | chr8_1:6734052-6734071 | Msa1175430:intron | 30.0% | |
| TCCGTAGAAAGATATATGAT+GGG | + | chr8_1:6734056-6734075 | None:intergenic | 30.0% | |
| ATCCGTAGAAAGATATATGA+TGG | + | chr8_1:6734057-6734076 | None:intergenic | 30.0% | |
| ATAAATTCAAGCGAAAACCA+GGG | + | chr8_1:6734559-6734578 | None:intergenic | 30.0% | |
| AATAAATTCAAGCGAAAACC+AGG | + | chr8_1:6734560-6734579 | None:intergenic | 30.0% | |
| ! | AACTTAAAAGGCCTTTTCAA+GGG | + | chr8_1:6734619-6734638 | None:intergenic | 30.0% |
| ! | AAACTTAAAAGGCCTTTTCA+AGG | + | chr8_1:6734620-6734639 | None:intergenic | 30.0% |
| ! | AACATTTTACTGTCAGGAAA+AGG | - | chr8_1:6734689-6734708 | Msa1175430:CDS | 30.0% |
| AGATACTTAAACTTATTCCC+GGG | + | chr8_1:6734795-6734814 | None:intergenic | 30.0% | |
| CAGATACTTAAACTTATTCC+CGG | + | chr8_1:6734796-6734815 | None:intergenic | 30.0% | |
| TTTGTCAGTAGAGAATTATC+TGG | + | chr8_1:6734927-6734946 | None:intergenic | 30.0% | |
| GTTAGTTAGTAGAAGTTAGT+TGG | + | chr8_1:6735060-6735079 | None:intergenic | 30.0% | |
| CATATCAAACCAAATTTAGC+AGG | + | chr8_1:6735132-6735151 | None:intergenic | 30.0% | |
| !! | CTGCTAAATTTGGTTTGATA+TGG | - | chr8_1:6735130-6735149 | Msa1175430:CDS | 30.0% |
| !!! | TAGTCACCGATTTTTTTTGT+AGG | - | chr8_1:6735155-6735174 | Msa1175430:CDS | 30.0% |
| ! | TTTTGTAGGCTCATAATGAA+AGG | - | chr8_1:6735169-6735188 | Msa1175430:CDS | 30.0% |
| ACATCAAATTGTTGACATAG+TGG | + | chr8_1:6735372-6735391 | None:intergenic | 30.0% | |
| ! | TCATTTTCCGCTACAATATT+CGG | + | chr8_1:6735628-6735647 | None:intergenic | 30.0% |
| ATGAAGATCGAAGATAATGA+CGG | - | chr8_1:6735648-6735667 | Msa1175430:CDS | 30.0% | |
| ATACAATCAAACCTATGGTA+GGG | + | chr8_1:6735712-6735731 | None:intergenic | 30.0% | |
| AATACAATCAAACCTATGGT+AGG | + | chr8_1:6735713-6735732 | None:intergenic | 30.0% | |
| ACTGTTATGTCACAAAATTC+AGG | + | chr8_1:6735858-6735877 | None:intergenic | 30.0% | |
| ! | TGAATTTTGTGACATAACAG+TGG | - | chr8_1:6735857-6735876 | Msa1175430:five_prime_UTR | 30.0% |
| ACAACTGTTATTGATAAGGT+TGG | + | chr8_1:6735922-6735941 | None:intergenic | 30.0% | |
| AACCTTATCAATAACAGTTG+TGG | - | chr8_1:6735921-6735940 | Msa1175430:five_prime_UTR | 30.0% | |
| !!! | CGAGAATGTAGTGCTTTTTT+TGG | + | chr8_1:6732417-6732436 | None:intergenic | 35.0% |
| TTCGGATTCTTTCATTCGAT+CGG | + | chr8_1:6732533-6732552 | None:intergenic | 35.0% | |
| !!! | GTTAGGGTTTTGATTCTGAT+CGG | + | chr8_1:6732617-6732636 | None:intergenic | 35.0% |
| ! | CTTCAATTAGCTTAGGGTTA+GGG | + | chr8_1:6732633-6732652 | None:intergenic | 35.0% |
| ! | TCTTCAATTAGCTTAGGGTT+AGG | + | chr8_1:6732634-6732653 | None:intergenic | 35.0% |
| TGTTGAATCCACATAGAACA+GGG | - | chr8_1:6732710-6732729 | Msa1175430:intron | 35.0% | |
| ATTACATTCCCTGTTCTATG+TGG | + | chr8_1:6732721-6732740 | None:intergenic | 35.0% | |
| TTGATCAGAGTTTGTCAAAG+AGG | - | chr8_1:6732806-6732825 | Msa1175430:intron | 35.0% | |
| CAAATGATTCGACATTTGAC+CGG | + | chr8_1:6732887-6732906 | None:intergenic | 35.0% | |
| !! | TTTGCCTCAACCTTGTTATT+TGG | - | chr8_1:6733116-6733135 | Msa1175430:intron | 35.0% |
| TCATCCAAATAACAAGGTTG+AGG | + | chr8_1:6733123-6733142 | None:intergenic | 35.0% | |
| CTCTCATCATCCAAATAACA+AGG | + | chr8_1:6733129-6733148 | None:intergenic | 35.0% | |
| !! | CTTGTTATTTGGATGATGAG+AGG | - | chr8_1:6733127-6733146 | Msa1175430:intron | 35.0% |
| TCCAAAGAAGAAAACTGTTC+AGG | - | chr8_1:6733224-6733243 | Msa1175430:intron | 35.0% | |
| ! | TCCTGAACAGTTTTCTTCTT+TGG | + | chr8_1:6733228-6733247 | None:intergenic | 35.0% |
| GAAAACTGTTCAGGATGTTA+TGG | - | chr8_1:6733233-6733252 | Msa1175430:intron | 35.0% | |
| GTAAGCAAAATAAGGCGATT+GGG | + | chr8_1:6733381-6733400 | None:intergenic | 35.0% | |
| AGTAAGCAAAATAAGGCGAT+TGG | + | chr8_1:6733382-6733401 | None:intergenic | 35.0% | |
| CGATTTATTCAGACATTCCT+TGG | - | chr8_1:6733408-6733427 | Msa1175430:intron | 35.0% | |
| TTATTCAGACATTCCTTGGA+AGG | - | chr8_1:6733412-6733431 | Msa1175430:intron | 35.0% | |
| !!! | GACACGGTTTTTTGAAATTC+TGG | - | chr8_1:6733460-6733479 | Msa1175430:intron | 35.0% |
| CTTGCATATGTAGTCAAGAT+CGG | - | chr8_1:6733611-6733630 | Msa1175430:intron | 35.0% | |
| !!! | TGCGTAGAATTTTTTACTGC+AGG | - | chr8_1:6733724-6733743 | Msa1175430:intron | 35.0% |
| !!! | GCGTAGAATTTTTTACTGCA+GGG | - | chr8_1:6733725-6733744 | Msa1175430:intron | 35.0% |
| GTTGGCACTTCATTCAAATT+TGG | + | chr8_1:6733753-6733772 | None:intergenic | 35.0% | |
| ! | TTTTCATGGCTCATGAGTTA+TGG | - | chr8_1:6733777-6733796 | Msa1175430:CDS | 35.0% |
| !! | AAAGAGAGCACTAAAATTGC+AGG | + | chr8_1:6733906-6733925 | None:intergenic | 35.0% |
| AAGTAAGGCAATATGGTAGA+GGG | + | chr8_1:6733931-6733950 | None:intergenic | 35.0% | |
| AATGGACAAGTAAGGCAATA+TGG | + | chr8_1:6733938-6733957 | None:intergenic | 35.0% | |
| !! | AAGATATATGATGGGTGCAT+CGG | + | chr8_1:6734048-6734067 | None:intergenic | 35.0% |
| AGTCTGTTCCACTTGTAATT+CGG | - | chr8_1:6734129-6734148 | Msa1175430:intron | 35.0% | |
| TCGGAATTCAGCAGAAAAAT+GGG | - | chr8_1:6734157-6734176 | Msa1175430:intron | 35.0% | |
| TTGTACAGGCATCATATTGA+GGG | - | chr8_1:6734188-6734207 | Msa1175430:intron | 35.0% | |
| GTAATCCTAATGATCAGCTT+TGG | + | chr8_1:6734299-6734318 | None:intergenic | 35.0% | |
| TGAAAGTTTCATGGGTAACT+TGG | - | chr8_1:6734329-6734348 | Msa1175430:intron | 35.0% | |
| !! | TTCAACGCTTCTCTAAGATA+TGG | + | chr8_1:6734377-6734396 | None:intergenic | 35.0% |
| TAAATTCAAGCGAAAACCAG+GGG | + | chr8_1:6734558-6734577 | None:intergenic | 35.0% | |
| !! | ACTTAAAAGGCCTTTTCAAG+GGG | + | chr8_1:6734618-6734637 | None:intergenic | 35.0% |
| ! | AAGGAAACTTTAAGAGCTGT+AGG | - | chr8_1:6734708-6734727 | Msa1175430:CDS | 35.0% |
| ! | GGAAACAAGTTGAATACCAT+AGG | + | chr8_1:6734735-6734754 | None:intergenic | 35.0% |
| TTCAAGGCTTAGACAACTAA+AGG | + | chr8_1:6734756-6734775 | None:intergenic | 35.0% | |
| CTTTGTGTAATTCCCCAAAA+CGG | - | chr8_1:6734828-6734847 | Msa1175430:CDS | 35.0% | |
| TTTGTGTAATTCCCCAAAAC+GGG | - | chr8_1:6734829-6734848 | Msa1175430:CDS | 35.0% | |
| ! | ACTCAATTCTATCCCGTTTT+GGG | + | chr8_1:6734844-6734863 | None:intergenic | 35.0% |
| ! | TACTCAATTCTATCCCGTTT+TGG | + | chr8_1:6734845-6734864 | None:intergenic | 35.0% |
| GTCTTTAAATATCCCTCGAA+TGG | + | chr8_1:6734981-6735000 | None:intergenic | 35.0% | |
| AATTTAGCAGGGATTCTGTA+AGG | + | chr8_1:6735120-6735139 | None:intergenic | 35.0% | |
| TACAGAATCCCTGCTAAATT+TGG | - | chr8_1:6735120-6735139 | Msa1175430:CDS | 35.0% | |
| ! | CAAAAATTTTCAGAGAGGGA+AGG | + | chr8_1:6735278-6735297 | None:intergenic | 35.0% |
| ! | TGCGCAAAAATTTTCAGAGA+GGG | + | chr8_1:6735282-6735301 | None:intergenic | 35.0% |
| ! | GAATATTTTCACACTGAAGG+TGG | - | chr8_1:6735456-6735475 | Msa1175430:CDS | 35.0% |
| TGAAGAACCGAATATTGTAG+CGG | - | chr8_1:6735618-6735637 | Msa1175430:CDS | 35.0% | |
| ! | ATTTTGTGACATAACAGTGG+TGG | - | chr8_1:6735860-6735879 | Msa1175430:five_prime_UTR | 35.0% |
| CCAAACACAGGTTCAACAAA+TGG | + | chr8_1:6732058-6732077 | None:intergenic | 40.0% | |
| ! | CCATTTGTTGAACCTGTGTT+TGG | - | chr8_1:6732055-6732074 | Msa1175430:three_prime_UTR | 40.0% |
| GCAAAGGAGATTGAATGTGT+CGG | + | chr8_1:6732109-6732128 | None:intergenic | 40.0% | |
| ! | GTGAGTTTGGTGAATCGTTA+GGG | + | chr8_1:6732200-6732219 | None:intergenic | 40.0% |
| ! | AGTGAGTTTGGTGAATCGTT+AGG | + | chr8_1:6732201-6732220 | None:intergenic | 40.0% |
| AAGATCTCAATTCCCGATTC+CGG | - | chr8_1:6732374-6732393 | Msa1175430:CDS | 40.0% | |
| TGAATGAGGTGGTGAAGTAA+CGG | + | chr8_1:6732495-6732514 | None:intergenic | 40.0% | |
| TTCTTTCATTCGATCGGAGA+TGG | + | chr8_1:6732527-6732546 | None:intergenic | 40.0% | |
| ! | TTGAGAGACGTTGTTGTTGT+TGG | + | chr8_1:6732579-6732598 | None:intergenic | 40.0% |
| CTGATCGGAAGAGTTGAAAA+CGG | + | chr8_1:6732602-6732621 | None:intergenic | 40.0% | |
| CTGTTGAATCCACATAGAAC+AGG | - | chr8_1:6732709-6732728 | Msa1175430:intron | 40.0% | |
| TGATGAGAGGTTGAAGAAGT+TGG | - | chr8_1:6733140-6733159 | Msa1175430:intron | 40.0% | |
| AGAGGTTGAAGAAGTTGGAT+GGG | - | chr8_1:6733145-6733164 | Msa1175430:intron | 40.0% | |
| ! | TTGAAGAAGTTGGATGGGTT+GGG | - | chr8_1:6733150-6733169 | Msa1175430:intron | 40.0% |
| TGAGTAAACCTAAGGCTGTT+TGG | - | chr8_1:6733181-6733200 | Msa1175430:intron | 40.0% | |
| GAGTAAACCTAAGGCTGTTT+GGG | - | chr8_1:6733182-6733201 | Msa1175430:intron | 40.0% | |
| ! | GATGATGATGTTATGGCGAT+TGG | - | chr8_1:6733270-6733289 | Msa1175430:intron | 40.0% |
| ! | GTCTTGCATTGATGAGCAAT+CGG | + | chr8_1:6733348-6733367 | None:intergenic | 40.0% |
| GCTGAGCAGTAAGCAAAATA+AGG | + | chr8_1:6733389-6733408 | None:intergenic | 40.0% | |
| AAGCAATGAAGTTCCTTCCA+AGG | + | chr8_1:6733428-6733447 | None:intergenic | 40.0% | |
| CGATCTTGACTACATATGCA+AGG | + | chr8_1:6733613-6733632 | None:intergenic | 40.0% | |
| ! | AAGTGCCAACTGCATTTTCA+TGG | - | chr8_1:6733763-6733782 | Msa1175430:intron | 40.0% |
| ATGAGCCATGAAAATGCAGT+TGG | + | chr8_1:6733771-6733790 | None:intergenic | 40.0% | |
| CAAGTAAGGCAATATGGTAG+AGG | + | chr8_1:6733932-6733951 | None:intergenic | 40.0% | |
| CTCGGAATTCAGCAGAAAAA+TGG | - | chr8_1:6734156-6734175 | Msa1175430:intron | 40.0% | |
| ! | AATGGGATGCTTTGTTGTAC+AGG | - | chr8_1:6734174-6734193 | Msa1175430:intron | 40.0% |
| GTTGTACAGGCATCATATTG+AGG | - | chr8_1:6734187-6734206 | Msa1175430:intron | 40.0% | |
| TCATATTGAGGGAGATTCAC+AGG | - | chr8_1:6734199-6734218 | Msa1175430:intron | 40.0% | |
| !! | CAGCTTTGGATGGTGAATTT+AGG | + | chr8_1:6734285-6734304 | None:intergenic | 40.0% |
| ACCATCCAAAGCTGATCATT+AGG | - | chr8_1:6734291-6734310 | Msa1175430:intron | 40.0% | |
| !! | TCCTAATGATCAGCTTTGGA+TGG | + | chr8_1:6734295-6734314 | None:intergenic | 40.0% |
| TTTAAGAGCTGTAGGTCCTA+TGG | - | chr8_1:6734716-6734735 | Msa1175430:CDS | 40.0% | |
| TAGTTGTCTAAGCCTTGAAG+CGG | - | chr8_1:6734757-6734776 | Msa1175430:CDS | 40.0% | |
| ! | CTCAATTCTATCCCGTTTTG+GGG | + | chr8_1:6734843-6734862 | None:intergenic | 40.0% |
| AGATGATAACCTTCCACACA+AGG | - | chr8_1:6734872-6734891 | Msa1175430:CDS | 40.0% | |
| AGAGAATTATCTGGCGTGAA+AGG | + | chr8_1:6734918-6734937 | None:intergenic | 40.0% | |
| AATATCCCTCGAATGGTAGA+GGG | + | chr8_1:6734974-6734993 | None:intergenic | 40.0% | |
| AAATATCCCTCGAATGGTAG+AGG | + | chr8_1:6734975-6734994 | None:intergenic | 40.0% | |
| ! | CTGCGCAAAAATTTTCAGAG+AGG | + | chr8_1:6735283-6735302 | None:intergenic | 40.0% |
| AAACCACTATGACAGCTGAT+TGG | - | chr8_1:6735334-6735353 | Msa1175430:CDS | 40.0% | |
| CAAGATGTCTTCAGTGAAAG+TGG | + | chr8_1:6735542-6735561 | None:intergenic | 40.0% | |
| CTTTCACTGAAGACATCTTG+CGG | - | chr8_1:6735542-6735561 | Msa1175430:CDS | 40.0% | |
| TGTGATGAGTATCTTTGCCA+AGG | - | chr8_1:6735595-6735614 | Msa1175430:CDS | 40.0% | |
| CAATATTCGGTTCTTCACCT+TGG | + | chr8_1:6735615-6735634 | None:intergenic | 40.0% | |
| GCAGAGTAGAGTGTAAGCAA+AGG | + | chr8_1:6732125-6732144 | None:intergenic | 45.0% | |
| GAGGAGGAATCCATTGGTAT+AGG | + | chr8_1:6732274-6732293 | None:intergenic | 45.0% | |
| TCTTCGACGTGGAATGTAGA+GGG | + | chr8_1:6732358-6732377 | None:intergenic | 45.0% | |
| ATCTTCGACGTGGAATGTAG+AGG | + | chr8_1:6732359-6732378 | None:intergenic | 45.0% | |
| GAGGTAAATGGCGCGTAATT+CGG | + | chr8_1:6732551-6732570 | None:intergenic | 45.0% | |
| TTGTTGGCGCAAGAGGTAAA+TGG | + | chr8_1:6732563-6732582 | None:intergenic | 45.0% | |
| GAGAGGTTGAAGAAGTTGGA+TGG | - | chr8_1:6733144-6733163 | Msa1175430:intron | 45.0% | |
| GTTGAAGAAGTTGGATGGGT+TGG | - | chr8_1:6733149-6733168 | Msa1175430:intron | 45.0% | |
| TAAACCTAAGGCTGTTTGGG+AGG | - | chr8_1:6733185-6733204 | Msa1175430:intron | 45.0% | |
| ATGCTGAAGTGGAGCATGAA+TGG | - | chr8_1:6733304-6733323 | Msa1175430:intron | 45.0% | |
| TGCTGAAGTGGAGCATGAAT+GGG | - | chr8_1:6733305-6733324 | Msa1175430:intron | 45.0% | |
| !! | GCATGAATGGGTTATGCAAC+CGG | - | chr8_1:6733317-6733336 | Msa1175430:intron | 45.0% |
| !! | CATGAATGGGTTATGCAACC+GGG | - | chr8_1:6733318-6733337 | Msa1175430:intron | 45.0% |
| ! | GCTTTGCATTTTCGGAGACA+CGG | - | chr8_1:6733444-6733463 | Msa1175430:intron | 45.0% |
| ! | AGATGCAATCTGCTGCTTGA+GGG | + | chr8_1:6734007-6734026 | None:intergenic | 45.0% |
| ! | AAGATGCAATCTGCTGCTTG+AGG | + | chr8_1:6734008-6734027 | None:intergenic | 45.0% |
| AAGCAGCAGATTGCATCTTG+AGG | - | chr8_1:6734009-6734028 | Msa1175430:intron | 45.0% | |
| AGCAGCAGATTGCATCTTGA+GGG | - | chr8_1:6734010-6734029 | Msa1175430:intron | 45.0% | |
| CATCTTGAGGGTGATTGAGA+GGG | - | chr8_1:6734022-6734041 | Msa1175430:intron | 45.0% | |
| GATGCAGCTGAAAGTGAAAC+TGG | - | chr8_1:6734074-6734093 | Msa1175430:intron | 45.0% | |
| ! | CAGTCACTGATTGTGCTGAA+TGG | - | chr8_1:6734104-6734123 | Msa1175430:intron | 45.0% |
| ! | TTTTCTGCTGAATTCCGAGC+TGG | + | chr8_1:6734155-6734174 | None:intergenic | 45.0% |
| TTGGATGGTGAATTTAGGCC+AGG | + | chr8_1:6734280-6734299 | None:intergenic | 45.0% | |
| !! | ACAACTGTTGATAATGCCCC+TGG | - | chr8_1:6734539-6734558 | Msa1175430:CDS | 45.0% |
| !! | CCTTTTCAAGGGGAAAAAGG+GGG | + | chr8_1:6734608-6734627 | None:intergenic | 45.0% |
| !! | GCCTTTTCAAGGGGAAAAAG+GGG | + | chr8_1:6734609-6734628 | None:intergenic | 45.0% |
| !! | GGCCTTTTCAAGGGGAAAAA+GGG | + | chr8_1:6734610-6734629 | None:intergenic | 45.0% |
| !! | AGGCCTTTTCAAGGGGAAAA+AGG | + | chr8_1:6734611-6734630 | None:intergenic | 45.0% |
| AGTTGTCTAAGCCTTGAAGC+GGG | - | chr8_1:6734758-6734777 | Msa1175430:CDS | 45.0% | |
| !! | TGAAAGGAGAGTGCTCCTTT+GGG | + | chr8_1:6734902-6734921 | None:intergenic | 45.0% |
| ATATCCCTCGAATGGTAGAG+GGG | + | chr8_1:6734973-6734992 | None:intergenic | 45.0% | |
| ACTGAAGGTGGAAGCTATGT+TGG | - | chr8_1:6735468-6735487 | Msa1175430:CDS | 45.0% | |
| TCCAATGAACACGCTAGACA+TGG | + | chr8_1:6735509-6735528 | None:intergenic | 45.0% | |
| TCTTCAGTGAAAGTGGAACC+AGG | + | chr8_1:6735535-6735554 | None:intergenic | 45.0% | |
| CAATCAAACCTATGGTAGGG+CGG | + | chr8_1:6735709-6735728 | None:intergenic | 45.0% | |
| GAGTGAGTGAGGGAGTGATT+TGG | + | chr8_1:6732162-6732181 | None:intergenic | 50.0% | |
| !! | AATCGTTAGGGTGACTCGGT+TGG | + | chr8_1:6732188-6732207 | None:intergenic | 50.0% |
| GGTGAATCGTTAGGGTGACT+CGG | + | chr8_1:6732192-6732211 | None:intergenic | 50.0% | |
| TGGTATAGGTGAGTGAGCCA+CGG | + | chr8_1:6732260-6732279 | None:intergenic | 50.0% | |
| GGCTCACTCACCTATACCAA+TGG | - | chr8_1:6732261-6732280 | Msa1175430:three_prime_UTR | 50.0% | |
| !! | AATGTAGAGGGAGGTGTTCG+GGG | + | chr8_1:6732346-6732365 | None:intergenic | 50.0% |
| !! | GAATGTAGAGGGAGGTGTTC+GGG | + | chr8_1:6732347-6732366 | None:intergenic | 50.0% |
| !! | GGAATGTAGAGGGAGGTGTT+CGG | + | chr8_1:6732348-6732367 | None:intergenic | 50.0% |
| GGGAATTGAGATCTTCGACG+TGG | + | chr8_1:6732369-6732388 | None:intergenic | 50.0% | |
| TGAAATTGACGCGCCGGAAT+CGG | + | chr8_1:6732390-6732409 | None:intergenic | 50.0% | |
| GAGGAGAAGGAGAAGGAGAA+TGG | + | chr8_1:6732440-6732459 | None:intergenic | 50.0% | |
| AGAAGAGGAAGAGGAGGAGA+AGG | + | chr8_1:6732453-6732472 | None:intergenic | 50.0% | |
| CTGAGAAGAAGAGGAAGAGG+AGG | + | chr8_1:6732459-6732478 | None:intergenic | 50.0% | |
| GGACTGAGAAGAAGAGGAAG+AGG | + | chr8_1:6732462-6732481 | None:intergenic | 50.0% | |
| GATTGGGGACTGAGAAGAAG+AGG | + | chr8_1:6732468-6732487 | None:intergenic | 50.0% | |
| TGAAGTAACGGCGGAGATTG+GGG | + | chr8_1:6732483-6732502 | None:intergenic | 50.0% | |
| GTGAAGTAACGGCGGAGATT+GGG | + | chr8_1:6732484-6732503 | None:intergenic | 50.0% | |
| ATGAGGTGGTGAAGTAACGG+CGG | + | chr8_1:6732492-6732511 | None:intergenic | 50.0% | |
| CATTCGATCGGAGATGGAGT+CGG | + | chr8_1:6732521-6732540 | None:intergenic | 50.0% | |
| ! | GTTGTTGTTGTTGGCGCAAG+AGG | + | chr8_1:6732570-6732589 | None:intergenic | 50.0% |
| ! | TTTTCGCGGCGATTCTGAAC+AGG | - | chr8_1:6732929-6732948 | Msa1175430:intron | 50.0% |
| TTTCGCGGCGATTCTGAACA+GGG | - | chr8_1:6732930-6732949 | Msa1175430:intron | 50.0% | |
| ! | GGCGATTCTGAACAGGGTTT+TGG | - | chr8_1:6732936-6732955 | Msa1175430:intron | 50.0% |
| TCATCCTCCCAAACAGCCTT+AGG | + | chr8_1:6733192-6733211 | None:intergenic | 50.0% | |
| TAAGGCTGTTTGGGAGGATG+AGG | - | chr8_1:6733191-6733210 | Msa1175430:intron | 50.0% | |
| TTTGGGAGGATGAGGATACG+AGG | - | chr8_1:6733199-6733218 | Msa1175430:intron | 50.0% | |
| GGGATGGGGAAAAAGCAACT+AGG | + | chr8_1:6733987-6734006 | None:intergenic | 50.0% | |
| ! | AATCTGCTGCTTGAGGGATG+GGG | + | chr8_1:6734001-6734020 | None:intergenic | 50.0% |
| ! | CAATCTGCTGCTTGAGGGAT+GGG | + | chr8_1:6734002-6734021 | None:intergenic | 50.0% |
| GCATCTTGAGGGTGATTGAG+AGG | - | chr8_1:6734021-6734040 | Msa1175430:intron | 50.0% | |
| CACTTGTAATTCGGCCAGCT+CGG | - | chr8_1:6734138-6734157 | Msa1175430:intron | 50.0% | |
| AAGCTTGTGACCTTGCGCTA+AGG | - | chr8_1:6734460-6734479 | Msa1175430:intron | 50.0% | |
| ! | CCCCCTTTTTCCCCTTGAAA+AGG | - | chr8_1:6734605-6734624 | Msa1175430:CDS | 50.0% |
| TCTAAGCCTTGAAGCGGGAT+TGG | - | chr8_1:6734763-6734782 | Msa1175430:CDS | 50.0% | |
| !! | GAAAGGAGAGTGCTCCTTTG+GGG | + | chr8_1:6734901-6734920 | None:intergenic | 50.0% |
| !! | GTGAAAGGAGAGTGCTCCTT+TGG | + | chr8_1:6734903-6734922 | None:intergenic | 50.0% |
| ATCTTCCCCTCTACCATTCG+AGG | - | chr8_1:6734965-6734984 | Msa1175430:CDS | 50.0% | |
| TCTTCCCCTCTACCATTCGA+GGG | - | chr8_1:6734966-6734985 | Msa1175430:CDS | 50.0% | |
| TGGCCAATCAGCTGTCATAG+TGG | + | chr8_1:6735340-6735359 | None:intergenic | 50.0% | |
| GCCATGTCTAGCGTGTTCAT+TGG | - | chr8_1:6735505-6735524 | Msa1175430:CDS | 50.0% | |
| AGACATCTTGCGGCTGAGAA+AGG | - | chr8_1:6735552-6735571 | Msa1175430:CDS | 50.0% | |
| !! | GTTTTCTTGTGCCGTTGCTC+AGG | - | chr8_1:6735670-6735689 | Msa1175430:CDS | 50.0% |
| AAGTGTCTGGTCCTGAGCAA+CGG | + | chr8_1:6735684-6735703 | None:intergenic | 50.0% | |
| CGGTTGGAGAGAGTGAGTGA+GGG | + | chr8_1:6732172-6732191 | None:intergenic | 55.0% | |
| TCGGTTGGAGAGAGTGAGTG+AGG | + | chr8_1:6732173-6732192 | None:intergenic | 55.0% | |
| TATAGGTGAGTGAGCCACGG+CGG | + | chr8_1:6732257-6732276 | None:intergenic | 55.0% | |
| TCGTCGGAGGAGGAATCCAT+TGG | + | chr8_1:6732280-6732299 | None:intergenic | 55.0% | |
| ! | GTTGGTGGATGAGGTTGTGG+TGG | + | chr8_1:6732312-6732331 | None:intergenic | 55.0% |
| !! | AGGGTTGGTGGATGAGGTTG+TGG | + | chr8_1:6732315-6732334 | None:intergenic | 55.0% |
| !! | TTGTGGAGGGTTGGTGGATG+AGG | + | chr8_1:6732321-6732340 | None:intergenic | 55.0% |
| !! | TTCGGGGTTTTGTGGAGGGT+TGG | + | chr8_1:6732330-6732349 | None:intergenic | 55.0% |
| !! | GGTGTTCGGGGTTTTGTGGA+GGG | + | chr8_1:6732334-6732353 | None:intergenic | 55.0% |
| !! | AGGTGTTCGGGGTTTTGTGG+AGG | + | chr8_1:6732335-6732354 | None:intergenic | 55.0% |
| TCGACGTGGAATGTAGAGGG+AGG | + | chr8_1:6732355-6732374 | None:intergenic | 55.0% | |
| GAAATTGACGCGCCGGAATC+GGG | + | chr8_1:6732389-6732408 | None:intergenic | 55.0% | |
| GGAAGGTGAAATTGACGCGC+CGG | + | chr8_1:6732396-6732415 | None:intergenic | 55.0% | |
| GGAAGAGGAGGAGAAGGAGA+AGG | + | chr8_1:6732447-6732466 | None:intergenic | 55.0% | |
| GGTGAAGTAACGGCGGAGAT+TGG | + | chr8_1:6732485-6732504 | None:intergenic | 55.0% | |
| GATGGAGTCGGAGGTGAATG+AGG | + | chr8_1:6732509-6732528 | None:intergenic | 55.0% | |
| !! | GAATGGGTTATGCAACCGGG+TGG | - | chr8_1:6733321-6733340 | Msa1175430:intron | 55.0% |
| TGATGAGCAATCGGTCCACC+CGG | + | chr8_1:6733339-6733358 | None:intergenic | 55.0% | |
| ! | GCAATCTGCTGCTTGAGGGA+TGG | + | chr8_1:6734003-6734022 | None:intergenic | 55.0% |
| CGAGCTGGCCGAATTACAAG+TGG | + | chr8_1:6734140-6734159 | None:intergenic | 55.0% | |
| AGAAGAGGAGCCTTAGCGCA+AGG | + | chr8_1:6734473-6734492 | None:intergenic | 55.0% | |
| CTGAAGCCAATCCCGCTTCA+AGG | + | chr8_1:6734772-6734791 | None:intergenic | 55.0% | |
| !! | TTGGGGTAGCCTTGTGTGGA+AGG | + | chr8_1:6734884-6734903 | None:intergenic | 55.0% |
| TCCACACAAGGCTACCCCAA+AGG | - | chr8_1:6734884-6734903 | Msa1175430:CDS | 55.0% | |
| !! | TCCTTTGGGGTAGCCTTGTG+TGG | + | chr8_1:6734888-6734907 | None:intergenic | 55.0% |
| ! | AGCGTGTTCATTGGAGCACC+TGG | - | chr8_1:6735514-6735533 | Msa1175430:CDS | 55.0% |
| TCTTGCGGCTGAGAAAGGAC+TGG | - | chr8_1:6735557-6735576 | Msa1175430:CDS | 55.0% | |
| CTTGCGGCTGAGAAAGGACT+GGG | - | chr8_1:6735558-6735577 | Msa1175430:CDS | 55.0% | |
| TTGCGGCTGAGAAAGGACTG+GGG | - | chr8_1:6735559-6735578 | Msa1175430:CDS | 55.0% | |
| ACACTTGACCGCCCTACCAT+AGG | - | chr8_1:6735698-6735717 | Msa1175430:exon | 55.0% | |
| GTGGTGGTCGTCGTCTTCGT+CGG | + | chr8_1:6732296-6732315 | None:intergenic | 60.0% | |
| !! | GGGGTTTTGTGGAGGGTTGG+TGG | + | chr8_1:6732327-6732346 | None:intergenic | 60.0% |
| !!! | GGGAGGTGTTCGGGGTTTTG+TGG | + | chr8_1:6732338-6732357 | None:intergenic | 60.0% |
| GGAGTCGGAGGTGAATGAGG+TGG | + | chr8_1:6732506-6732525 | None:intergenic | 60.0% | |
| TCGATCGGAGATGGAGTCGG+AGG | + | chr8_1:6732518-6732537 | None:intergenic | 60.0% | |
| !! | AAGCGGGATTGGCTTCAGCC+CGG | - | chr8_1:6734774-6734793 | Msa1175430:CDS | 60.0% |
| TGGTAGGGCGGTCAAGTGTC+TGG | + | chr8_1:6735697-6735716 | None:intergenic | 60.0% | |
| GTCGTCGTCTTCGTCGGAGG+AGG | + | chr8_1:6732290-6732309 | None:intergenic | 65.0% | |
| GTGGTCGTCGTCTTCGTCGG+AGG | + | chr8_1:6732293-6732312 | None:intergenic | 65.0% | |
| !! | AGCGGGATTGGCTTCAGCCC+GGG | - | chr8_1:6734775-6734794 | Msa1175430:CDS | 65.0% |
| ACGGCGGCGCGTGAGTGACA+CGG | + | chr8_1:6732241-6732260 | None:intergenic | 70.0% | |
| GCGGCGCGTGAGTGACACGG+TGG | + | chr8_1:6732238-6732257 | None:intergenic | 75.0% | |
| ! | GTGTCACTCACGCGCCGCCG+TGG | - | chr8_1:6732240-6732259 | Msa1175430:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 6732044 | 6735944 | 6732044 | ID=Msa1175430;Name=Msa1175430 |
| chr8_1 | mRNA | 6732044 | 6735944 | 6732044 | ID=Msa1175430-mRNA-1;Parent=Msa1175430;Name=Msa1175430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=236|1|1|1|1|1|3|293|542 |
| chr8_1 | exon | 6732044 | 6732513 | 6732044 | ID=Msa1175430-mRNA-1:exon:2406;Parent=Msa1175430-mRNA-1 |
| chr8_1 | exon | 6733768 | 6734017 | 6733768 | ID=Msa1175430-mRNA-1:exon:2405;Parent=Msa1175430-mRNA-1 |
| chr8_1 | exon | 6734507 | 6735944 | 6734507 | ID=Msa1175430-mRNA-1:exon:2404;Parent=Msa1175430-mRNA-1 |
| chr8_1 | five_prime_UTR | 6735709 | 6735944 | 6735709 | ID=Msa1175430-mRNA-1:five_prime_utr;Parent=Msa1175430-mRNA-1 |
| chr8_1 | CDS | 6734507 | 6735708 | 6734507 | ID=Msa1175430-mRNA-1:cds;Parent=Msa1175430-mRNA-1 |
| chr8_1 | CDS | 6733768 | 6734017 | 6733768 | ID=Msa1175430-mRNA-1:cds;Parent=Msa1175430-mRNA-1 |
| chr8_1 | CDS | 6732337 | 6732513 | 6732337 | ID=Msa1175430-mRNA-1:cds;Parent=Msa1175430-mRNA-1 |
| chr8_1 | three_prime_UTR | 6732044 | 6732336 | 6732044 | ID=Msa1175430-mRNA-1:three_prime_utr;Parent=Msa1175430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
