AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1176120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176120 MtrunA17_Chr8g0346251 96.371 248 8 1 1 247 1 248 8.48e-178 488
Msa1176120 MtrunA17_Chr3g0127511 43.062 209 113 3 42 247 40 245 6.22e-48 158
Msa1176120 MtrunA17_Chr6g0450991 53.125 96 45 0 42 137 69 164 1.07e-29 112
Msa1176120 MtrunA17_Chr8g0381741 48.148 108 56 0 42 149 56 163 3.45e-29 111
Msa1176120 MtrunA17_Chr6g0453021 50.000 112 47 2 21 132 86 188 1.37e-26 103
Msa1176120 MtrunA17_Chr3g0123691 38.547 179 97 6 20 194 44 213 3.23e-26 103
Msa1176120 MtrunA17_Chr8g0362151 40.945 127 70 1 8 134 50 171 5.23e-26 102
Msa1176120 MtrunA17_Chr5g0415941 48.571 105 53 1 42 145 89 193 7.15e-26 103
Msa1176120 MtrunA17_Chr8g0362751 37.222 180 90 6 42 204 91 264 2.84e-25 100
Msa1176120 MtrunA17_Chr4g0060031 42.478 113 62 1 42 154 97 206 6.54e-25 100
Msa1176120 MtrunA17_Chr5g0416391 40.984 122 72 0 13 134 50 171 7.60e-25 99.8
Msa1176120 MtrunA17_Chr1g0179581 52.381 84 33 1 42 125 30 106 3.17e-24 93.6
Msa1176120 MtrunA17_Chr3g0119291 47.253 91 48 0 42 132 61 151 1.22e-23 95.9
Msa1176120 MtrunA17_Chr7g0265521 48.352 91 40 1 42 132 65 148 6.49e-22 90.9
Msa1176120 MtrunA17_Chr7g0217111 50.000 90 38 1 43 132 83 165 3.14e-21 89.7
Msa1176120 MtrunA17_Chr5g0403701 51.852 81 34 1 28 108 46 121 3.18e-18 80.1
Msa1176120 MtrunA17_Chr5g0403691 51.852 81 34 1 28 108 46 121 1.07e-17 79.0
Msa1176120 MtrunA17_Chr4g0055851 44.578 83 46 0 43 125 123 205 2.64e-14 70.9
Msa1176120 MtrunA17_Chr7g0258831 40.741 108 59 1 18 125 143 245 4.63e-14 70.1
Msa1176120 MtrunA17_Chr4g0071411 36.975 119 67 2 43 160 91 202 6.14e-14 68.9
Msa1176120 MtrunA17_Chr1g0175651 36.667 120 72 1 6 125 124 239 9.88e-13 66.6
Msa1176120 MtrunA17_Chr5g0400781 35.200 125 70 3 43 163 126 243 1.68e-12 65.5
Msa1176120 MtrunA17_Chr5g0399491 42.169 83 48 0 43 125 139 221 7.33e-12 63.9
Msa1176120 MtrunA17_Chr2g0308611 41.111 90 50 1 39 125 196 285 1.04e-11 63.9
Msa1176120 MtrunA17_Chr4g0054421 42.169 83 48 0 43 125 130 212 1.77e-11 62.8
Msa1176120 MtrunA17_Chr3g0135331 31.707 123 80 2 43 162 148 269 2.12e-11 62.8
Msa1176120 MtrunA17_Chr8g0335131 42.169 83 48 0 43 125 149 231 3.54e-11 62.0
Msa1176120 MtrunA17_Chr1g0151971 40.964 83 49 0 43 125 133 215 5.72e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1176120 AT2G46680.1 49.012 253 108 6 15 247 7 258 1.51e-64 202
Msa1176120 AT3G61890.1 55.238 210 82 5 43 247 33 235 3.89e-63 197
Msa1176120 AT2G46680.2 51.754 228 87 7 40 247 32 256 3.80e-61 193
Msa1176120 AT3G01470.1 44.531 128 70 1 42 168 70 197 5.78e-31 115
Msa1176120 AT2G22430.1 52.747 91 43 0 42 132 64 154 1.71e-28 110
Msa1176120 AT4G40060.1 50.549 91 45 0 42 132 61 151 3.81e-28 108
Msa1176120 AT5G65310.2 48.113 106 49 1 27 132 47 146 1.75e-27 107
Msa1176120 AT5G65310.1 48.113 106 49 1 27 132 65 164 2.42e-27 107
Msa1176120 AT5G15150.1 39.041 146 78 3 18 162 96 231 5.03e-26 103
Msa1176120 AT1G69780.1 45.946 111 55 2 22 132 72 177 6.76e-25 100
Msa1176120 AT3G01220.1 45.536 112 51 2 21 132 71 172 1.62e-24 99.4
Msa1176120 AT4G36740.2 57.746 71 30 0 42 112 58 128 2.35e-22 92.0
Msa1176120 AT4G36740.1 57.746 71 30 0 42 112 57 127 2.45e-22 91.7
Msa1176120 AT1G26960.1 47.788 113 46 3 20 132 57 156 1.53e-21 90.5
Msa1176120 AT2G18550.1 42.017 119 66 1 42 157 63 181 2.66e-21 89.4
Msa1176120 AT5G03790.1 44.792 96 46 1 42 137 79 167 3.85e-21 89.0
Msa1176120 AT1G27045.4 45.098 102 56 0 42 143 70 171 1.58e-20 87.8
Msa1176120 AT5G03790.2 45.263 95 52 0 42 136 79 173 1.93e-20 86.3
Msa1176120 AT5G66700.1 53.521 71 33 0 42 112 73 143 3.45e-20 86.3
Msa1176120 AT1G27045.5 48.810 84 43 0 42 125 27 110 3.17e-19 82.8
Msa1176120 AT1G27045.3 48.810 84 43 0 42 125 27 110 3.17e-19 82.8
Msa1176120 AT1G27045.2 48.810 84 43 0 42 125 19 102 3.24e-19 82.4
Msa1176120 AT1G27045.1 48.810 84 43 0 42 125 70 153 3.94e-19 83.6
Msa1176120 AT2G36610.1 41.176 102 48 2 39 132 70 167 5.34e-18 79.3
Msa1176120 AT5G53980.1 41.071 112 58 2 31 142 3 106 1.10e-16 75.1
Msa1176120 AT4G37790.1 40.964 83 49 0 43 125 129 211 1.49e-11 63.2
Msa1176120 AT2G22800.1 42.169 83 48 0 43 125 116 198 1.71e-11 63.2
Msa1176120 AT2G44910.1 41.772 79 46 0 43 121 166 244 1.98e-11 63.2
Msa1176120 AT3G60390.1 41.772 79 46 0 43 121 165 243 2.01e-11 63.2
Msa1176120 AT5G06710.1 39.759 83 50 0 43 125 193 275 2.94e-11 62.8
Msa1176120 AT2G01430.1 35.455 110 67 1 16 125 119 224 3.94e-11 62.0
Msa1176120 AT4G17460.1 41.772 79 46 0 43 121 138 216 5.12e-11 61.6
Msa1176120 AT4G16780.1 41.772 79 46 0 43 121 132 210 6.42e-11 61.6

Find 41 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAATAGTTACAATAATT+TGG 0.124744 8_1:+8024878 Msa1176120:CDS
CTACTCTGACTTTGCTCTAT+TGG 0.221851 8_1:-8025322 None:intergenic
GCTAATTGCAACTTCTTTCT+TGG 0.222692 8_1:-8024756 None:intergenic
ATTCAAACATCATATGAATT+AGG 0.288055 8_1:-8024557 None:intergenic
ATTATCAATGGTGGGACTTT+TGG 0.297638 8_1:+8025623 Msa1176120:CDS
TTTGAATCAAATGATTTGTT+AGG 0.319546 8_1:+8025586 Msa1176120:CDS
AGCCAAGACAAGTTGCTATA+TGG 0.331941 8_1:+8024796 Msa1176120:CDS
GATGTTTGAATTAGACAATA+TGG 0.344720 8_1:+8024569 Msa1176120:CDS
TCAAAAGCACTCCAATCTTC+TGG 0.368233 8_1:-8025568 None:intergenic
TGTTCTGATCTTTCTATTGA+AGG 0.372040 8_1:-8025430 None:intergenic
ATGGAAAGTGCAGCAGAAAA+TGG 0.377944 8_1:+8025370 Msa1176120:CDS
CTTTAACATCACCAGAAGAT+TGG 0.390865 8_1:+8025557 Msa1176120:CDS
TGATGAACAAATCAAATCAT+TGG 0.409448 8_1:+8024701 Msa1176120:CDS
TTTGGTTTAGAAGATGAAAC+TGG 0.409611 8_1:+8025502 Msa1176120:CDS
AGCATAAAGGTTGAATACTT+TGG 0.411821 8_1:+8025484 Msa1176120:CDS
TTCAAAACAAAAGAGCTAGA+TGG 0.440130 8_1:+8024820 Msa1176120:CDS
TTGCAATTAGCTAGAGAGCT+TGG 0.453561 8_1:+8024768 Msa1176120:CDS
AAAGTTTGAATCTATGAAGA+AGG 0.456244 8_1:+8024905 Msa1176120:CDS
AGATGATGACACAAGCATAA+AGG 0.461800 8_1:+8025471 Msa1176120:CDS
AAGACAAACATTACTAATAC+AGG 0.463639 8_1:+8024929 Msa1176120:CDS
AACCATATAGCAACTTGTCT+TGG 0.480304 8_1:-8024798 None:intergenic
GATCTTTCTATTGAAGGACT+TGG 0.483251 8_1:-8025424 None:intergenic
TATAGTTATTCAGCAGAAGC+AGG 0.509566 8_1:+8024603 Msa1176120:CDS
AATCAAGTTGTGATTATCAA+TGG 0.520398 8_1:+8025611 Msa1176120:CDS
TTATTTGAGTTCTTATCATG+AGG 0.553646 8_1:-8024450 None:intergenic
CAAGTTGTGATTATCAATGG+TGG 0.557189 8_1:+8025614 Msa1176120:CDS
TATTTGAGTTCTTATCATGA+GGG 0.572779 8_1:-8024449 None:intergenic
ACAGAGGAGGCAAAATTATG+TGG 0.582377 8_1:+8025657 Msa1176120:three_prime_UTR
AAGTTGTCAGGGGAAAATCA+AGG 0.603486 8_1:+8025732 Msa1176120:three_prime_UTR
AAGTTGTGATTATCAATGGT+GGG 0.604345 8_1:+8025615 Msa1176120:CDS
AGTTGTCAGGGGAAAATCAA+GGG 0.618503 8_1:+8025733 Msa1176120:three_prime_UTR
GGTCTTGAATGAAACAGAGG+AGG 0.619886 8_1:+8025644 Msa1176120:exon
TTTGGTCTTGAATGAAACAG+AGG 0.622140 8_1:+8025641 Msa1176120:exon
ATGCATGTATCTATATATGT+TGG 0.622370 8_1:-8024480 None:intergenic
ATTTGAGTTCTTATCATGAG+GGG 0.634012 8_1:-8024448 None:intergenic
AGTTAAAGAAGCAAACAGCA+TGG 0.635070 8_1:+8025351 Msa1176120:CDS
TTTGTTGAAGAAGTTGTCAG+GGG 0.642443 8_1:+8025722 Msa1176120:three_prime_UTR
AACATCATATGAATTAGGTG+AGG 0.651625 8_1:-8024552 None:intergenic
GAGGAGGCAAAATTATGTGG+AGG 0.659550 8_1:+8025660 Msa1176120:three_prime_UTR
GAAAGTGCAGCAGAAAATGG+AGG 0.672573 8_1:+8025373 Msa1176120:CDS
GATACATGCATATCATCACA+AGG 0.717524 8_1:+8024492 Msa1176120:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATAGTTACAATAATT+TGG + chr8_1:8024878-8024897 Msa1176120:CDS 15.0%
!! TGCGAAATTATTATTAATAA+CGG + chr8_1:8025078-8025097 Msa1176120:intron 15.0%
!! TCAAAATAGTTACAATAATT+TGG + chr8_1:8024878-8024897 Msa1176120:CDS 15.0%
!! TGCGAAATTATTATTAATAA+CGG + chr8_1:8025078-8025097 Msa1176120:intron 15.0%
!! ATTCAAACATCATATGAATT+AGG - chr8_1:8024560-8024579 None:intergenic 20.0%
!!! ATAAATTTGTTTGCTTAGAA+TGG + chr8_1:8024986-8025005 Msa1176120:intron 20.0%
!! GAAATTATTATTAATAACGG+TGG + chr8_1:8025081-8025100 Msa1176120:intron 20.0%
!! TAATCATATAGTAATTTGAC+TGG + chr8_1:8025253-8025272 Msa1176120:intron 20.0%
!!! TTTGAATCAAATGATTTGTT+AGG + chr8_1:8025586-8025605 Msa1176120:CDS 20.0%
!! ATTCAAACATCATATGAATT+AGG - chr8_1:8024560-8024579 None:intergenic 20.0%
!!! ATAAATTTGTTTGCTTAGAA+TGG + chr8_1:8024986-8025005 Msa1176120:intron 20.0%
!! GAAATTATTATTAATAACGG+TGG + chr8_1:8025081-8025100 Msa1176120:intron 20.0%
!! TAATCATATAGTAATTTGAC+TGG + chr8_1:8025253-8025272 Msa1176120:intron 20.0%
!!! TTTGAATCAAATGATTTGTT+AGG + chr8_1:8025586-8025605 Msa1176120:CDS 20.0%
!! TATTTGAGTTCTTATCATGA+GGG - chr8_1:8024452-8024471 None:intergenic 25.0%
!! TTATTTGAGTTCTTATCATG+AGG - chr8_1:8024453-8024472 None:intergenic 25.0%
! ATGCATGTATCTATATATGT+TGG - chr8_1:8024483-8024502 None:intergenic 25.0%
! GATGTTTGAATTAGACAATA+TGG + chr8_1:8024569-8024588 Msa1176120:CDS 25.0%
! AGAAAAACAAGAATACAAAG+AGG + chr8_1:8024673-8024692 Msa1176120:CDS 25.0%
! TGATGAACAAATCAAATCAT+TGG + chr8_1:8024701-8024720 Msa1176120:CDS 25.0%
! AAAGTTTGAATCTATGAAGA+AGG + chr8_1:8024905-8024924 Msa1176120:CDS 25.0%
! AAGACAAACATTACTAATAC+AGG + chr8_1:8024929-8024948 Msa1176120:CDS 25.0%
! ATCTTGTCAACATTTCAAAA+TGG - chr8_1:8025054-8025073 None:intergenic 25.0%
!! AATCAAGTTGTGATTATCAA+TGG + chr8_1:8025611-8025630 Msa1176120:CDS 25.0%
!! TATTTGAGTTCTTATCATGA+GGG - chr8_1:8024452-8024471 None:intergenic 25.0%
!! TTATTTGAGTTCTTATCATG+AGG - chr8_1:8024453-8024472 None:intergenic 25.0%
! ATGCATGTATCTATATATGT+TGG - chr8_1:8024483-8024502 None:intergenic 25.0%
! GATGTTTGAATTAGACAATA+TGG + chr8_1:8024569-8024588 Msa1176120:CDS 25.0%
! AGAAAAACAAGAATACAAAG+AGG + chr8_1:8024673-8024692 Msa1176120:CDS 25.0%
! TGATGAACAAATCAAATCAT+TGG + chr8_1:8024701-8024720 Msa1176120:CDS 25.0%
! AAAGTTTGAATCTATGAAGA+AGG + chr8_1:8024905-8024924 Msa1176120:CDS 25.0%
! AAGACAAACATTACTAATAC+AGG + chr8_1:8024929-8024948 Msa1176120:CDS 25.0%
! ATCTTGTCAACATTTCAAAA+TGG - chr8_1:8025054-8025073 None:intergenic 25.0%
!! AATCAAGTTGTGATTATCAA+TGG + chr8_1:8025611-8025630 Msa1176120:CDS 25.0%
! ATTTGAGTTCTTATCATGAG+GGG - chr8_1:8024451-8024470 None:intergenic 30.0%
AACATCATATGAATTAGGTG+AGG - chr8_1:8024555-8024574 None:intergenic 30.0%
!! CTTGTTTTTCTTCTTTCTCA+TGG - chr8_1:8024664-8024683 None:intergenic 30.0%
TTCAAAACAAAAGAGCTAGA+TGG + chr8_1:8024820-8024839 Msa1176120:CDS 30.0%
TGTTCTGATCTTTCTATTGA+AGG - chr8_1:8025433-8025452 None:intergenic 30.0%
AGCATAAAGGTTGAATACTT+TGG + chr8_1:8025484-8025503 Msa1176120:CDS 30.0%
! TTTGGTTTAGAAGATGAAAC+TGG + chr8_1:8025502-8025521 Msa1176120:CDS 30.0%
AAGTTGTGATTATCAATGGT+GGG + chr8_1:8025615-8025634 Msa1176120:CDS 30.0%
! TTTTGTTGAAGAAGTTGTCA+GGG + chr8_1:8025721-8025740 Msa1176120:three_prime_UTR 30.0%
! ATTTGAGTTCTTATCATGAG+GGG - chr8_1:8024451-8024470 None:intergenic 30.0%
AACATCATATGAATTAGGTG+AGG - chr8_1:8024555-8024574 None:intergenic 30.0%
!! CTTGTTTTTCTTCTTTCTCA+TGG - chr8_1:8024664-8024683 None:intergenic 30.0%
TTCAAAACAAAAGAGCTAGA+TGG + chr8_1:8024820-8024839 Msa1176120:CDS 30.0%
TGTTCTGATCTTTCTATTGA+AGG - chr8_1:8025433-8025452 None:intergenic 30.0%
AGCATAAAGGTTGAATACTT+TGG + chr8_1:8025484-8025503 Msa1176120:CDS 30.0%
! TTTGGTTTAGAAGATGAAAC+TGG + chr8_1:8025502-8025521 Msa1176120:CDS 30.0%
AAGTTGTGATTATCAATGGT+GGG + chr8_1:8025615-8025634 Msa1176120:CDS 30.0%
! TTTTGTTGAAGAAGTTGTCA+GGG + chr8_1:8025721-8025740 Msa1176120:three_prime_UTR 30.0%
GATACATGCATATCATCACA+AGG + chr8_1:8024492-8024511 Msa1176120:five_prime_UTR 35.0%
!!! AGGTGAGGAATGTTTTTTGA+GGG - chr8_1:8024540-8024559 None:intergenic 35.0%
!!! TAGGTGAGGAATGTTTTTTG+AGG - chr8_1:8024541-8024560 None:intergenic 35.0%
TATAGTTATTCAGCAGAAGC+AGG + chr8_1:8024603-8024622 Msa1176120:CDS 35.0%
GCTAATTGCAACTTCTTTCT+TGG - chr8_1:8024759-8024778 None:intergenic 35.0%
AACCATATAGCAACTTGTCT+TGG - chr8_1:8024801-8024820 None:intergenic 35.0%
! GATTGACTTTGTATCTTCAG+TGG - chr8_1:8025138-8025157 None:intergenic 35.0%
CTAATAACCATCGTGTTCAT+CGG - chr8_1:8025180-8025199 None:intergenic 35.0%
GATGAACACGATGGTTATTA+GGG + chr8_1:8025179-8025198 Msa1176120:intron 35.0%
AGTTAAAGAAGCAAACAGCA+TGG + chr8_1:8025351-8025370 Msa1176120:CDS 35.0%
TGGAGGAAAAATCAAATGTG+AGG + chr8_1:8025390-8025409 Msa1176120:CDS 35.0%
AAAAATCAAATGTGAGGCTG+AGG + chr8_1:8025396-8025415 Msa1176120:CDS 35.0%
GATCTTTCTATTGAAGGACT+TGG - chr8_1:8025427-8025446 None:intergenic 35.0%
AGATGATGACACAAGCATAA+AGG + chr8_1:8025471-8025490 Msa1176120:CDS 35.0%
! AATTTTGCTGAACATGCTGA+TGG + chr8_1:8025532-8025551 Msa1176120:CDS 35.0%
CTTTAACATCACCAGAAGAT+TGG + chr8_1:8025557-8025576 Msa1176120:CDS 35.0%
CAAGTTGTGATTATCAATGG+TGG + chr8_1:8025614-8025633 Msa1176120:CDS 35.0%
!! ATTATCAATGGTGGGACTTT+TGG + chr8_1:8025623-8025642 Msa1176120:CDS 35.0%
!! TTTGGTCTTGAATGAAACAG+AGG + chr8_1:8025641-8025660 Msa1176120:exon 35.0%
!! GTTTTGTTGAAGAAGTTGTC+AGG + chr8_1:8025720-8025739 Msa1176120:three_prime_UTR 35.0%
TTTGTTGAAGAAGTTGTCAG+GGG + chr8_1:8025722-8025741 Msa1176120:three_prime_UTR 35.0%
GATACATGCATATCATCACA+AGG + chr8_1:8024492-8024511 Msa1176120:five_prime_UTR 35.0%
!!! AGGTGAGGAATGTTTTTTGA+GGG - chr8_1:8024540-8024559 None:intergenic 35.0%
!!! TAGGTGAGGAATGTTTTTTG+AGG - chr8_1:8024541-8024560 None:intergenic 35.0%
TATAGTTATTCAGCAGAAGC+AGG + chr8_1:8024603-8024622 Msa1176120:CDS 35.0%
GCTAATTGCAACTTCTTTCT+TGG - chr8_1:8024759-8024778 None:intergenic 35.0%
AACCATATAGCAACTTGTCT+TGG - chr8_1:8024801-8024820 None:intergenic 35.0%
! GATTGACTTTGTATCTTCAG+TGG - chr8_1:8025138-8025157 None:intergenic 35.0%
CTAATAACCATCGTGTTCAT+CGG - chr8_1:8025180-8025199 None:intergenic 35.0%
GATGAACACGATGGTTATTA+GGG + chr8_1:8025179-8025198 Msa1176120:intron 35.0%
AGTTAAAGAAGCAAACAGCA+TGG + chr8_1:8025351-8025370 Msa1176120:CDS 35.0%
TGGAGGAAAAATCAAATGTG+AGG + chr8_1:8025390-8025409 Msa1176120:CDS 35.0%
AAAAATCAAATGTGAGGCTG+AGG + chr8_1:8025396-8025415 Msa1176120:CDS 35.0%
GATCTTTCTATTGAAGGACT+TGG - chr8_1:8025427-8025446 None:intergenic 35.0%
AGATGATGACACAAGCATAA+AGG + chr8_1:8025471-8025490 Msa1176120:CDS 35.0%
! AATTTTGCTGAACATGCTGA+TGG + chr8_1:8025532-8025551 Msa1176120:CDS 35.0%
CTTTAACATCACCAGAAGAT+TGG + chr8_1:8025557-8025576 Msa1176120:CDS 35.0%
CAAGTTGTGATTATCAATGG+TGG + chr8_1:8025614-8025633 Msa1176120:CDS 35.0%
!! ATTATCAATGGTGGGACTTT+TGG + chr8_1:8025623-8025642 Msa1176120:CDS 35.0%
!! TTTGGTCTTGAATGAAACAG+AGG + chr8_1:8025641-8025660 Msa1176120:exon 35.0%
!! GTTTTGTTGAAGAAGTTGTC+AGG + chr8_1:8025720-8025739 Msa1176120:three_prime_UTR 35.0%
TTTGTTGAAGAAGTTGTCAG+GGG + chr8_1:8025722-8025741 Msa1176120:three_prime_UTR 35.0%
TTGCAATTAGCTAGAGAGCT+TGG + chr8_1:8024768-8024787 Msa1176120:CDS 40.0%
AGCCAAGACAAGTTGCTATA+TGG + chr8_1:8024796-8024815 Msa1176120:CDS 40.0%
CGATGAACACGATGGTTATT+AGG + chr8_1:8025178-8025197 Msa1176120:intron 40.0%
CTACTCTGACTTTGCTCTAT+TGG - chr8_1:8025325-8025344 None:intergenic 40.0%
! ATGGAAAGTGCAGCAGAAAA+TGG + chr8_1:8025370-8025389 Msa1176120:CDS 40.0%
!! TCAAAAGCACTCCAATCTTC+TGG - chr8_1:8025571-8025590 None:intergenic 40.0%
ACAGAGGAGGCAAAATTATG+TGG + chr8_1:8025657-8025676 Msa1176120:three_prime_UTR 40.0%
AAGTTGTCAGGGGAAAATCA+AGG + chr8_1:8025732-8025751 Msa1176120:three_prime_UTR 40.0%
AGTTGTCAGGGGAAAATCAA+GGG + chr8_1:8025733-8025752 Msa1176120:three_prime_UTR 40.0%
TTGCAATTAGCTAGAGAGCT+TGG + chr8_1:8024768-8024787 Msa1176120:CDS 40.0%
AGCCAAGACAAGTTGCTATA+TGG + chr8_1:8024796-8024815 Msa1176120:CDS 40.0%
CGATGAACACGATGGTTATT+AGG + chr8_1:8025178-8025197 Msa1176120:intron 40.0%
CTACTCTGACTTTGCTCTAT+TGG - chr8_1:8025325-8025344 None:intergenic 40.0%
! ATGGAAAGTGCAGCAGAAAA+TGG + chr8_1:8025370-8025389 Msa1176120:CDS 40.0%
!! TCAAAAGCACTCCAATCTTC+TGG - chr8_1:8025571-8025590 None:intergenic 40.0%
ACAGAGGAGGCAAAATTATG+TGG + chr8_1:8025657-8025676 Msa1176120:three_prime_UTR 40.0%
AAGTTGTCAGGGGAAAATCA+AGG + chr8_1:8025732-8025751 Msa1176120:three_prime_UTR 40.0%
AGTTGTCAGGGGAAAATCAA+GGG + chr8_1:8025733-8025752 Msa1176120:three_prime_UTR 40.0%
GTTCATCGGTATCAACTCAG+TGG - chr8_1:8025166-8025185 None:intergenic 45.0%
GTTGATACCGATGAACACGA+TGG + chr8_1:8025170-8025189 Msa1176120:intron 45.0%
! GAAAGTGCAGCAGAAAATGG+AGG + chr8_1:8025373-8025392 Msa1176120:CDS 45.0%
GGTCTTGAATGAAACAGAGG+AGG + chr8_1:8025644-8025663 Msa1176120:exon 45.0%
GAGGAGGCAAAATTATGTGG+AGG + chr8_1:8025660-8025679 Msa1176120:three_prime_UTR 45.0%
GTTCATCGGTATCAACTCAG+TGG - chr8_1:8025166-8025185 None:intergenic 45.0%
GTTGATACCGATGAACACGA+TGG + chr8_1:8025170-8025189 Msa1176120:intron 45.0%
! GAAAGTGCAGCAGAAAATGG+AGG + chr8_1:8025373-8025392 Msa1176120:CDS 45.0%
GGTCTTGAATGAAACAGAGG+AGG + chr8_1:8025644-8025663 Msa1176120:exon 45.0%
GAGGAGGCAAAATTATGTGG+AGG + chr8_1:8025660-8025679 Msa1176120:three_prime_UTR 45.0%
!! ATTAAAAATTAAAATTGAAT+TGG - chr8_1:8025031-8025050 None:intergenic 5.0%
!! ATTAAAAATTAAAATTGAAT+TGG - chr8_1:8025031-8025050 None:intergenic 5.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 8024447 8025757 8024447 ID=Msa1176120;Name=Msa1176120
chr8_1 mRNA 8024447 8025757 8024447 ID=Msa1176120-mRNA-1;Parent=Msa1176120;Name=Msa1176120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120|1|1|1|1|1|2|106|247
chr8_1 exon 8024447 8024950 8024447 ID=Msa1176120-mRNA-1:exon:2787;Parent=Msa1176120-mRNA-1
chr8_1 exon 8025292 8025757 8025292 ID=Msa1176120-mRNA-1:exon:2788;Parent=Msa1176120-mRNA-1
chr8_1 five_prime_UTR 8024447 8024566 8024447 ID=Msa1176120-mRNA-1:five_prime_utr;Parent=Msa1176120-mRNA-1
chr8_1 CDS 8024567 8024950 8024567 ID=Msa1176120-mRNA-1:cds;Parent=Msa1176120-mRNA-1
chr8_1 CDS 8025292 8025651 8025292 ID=Msa1176120-mRNA-1:cds;Parent=Msa1176120-mRNA-1
chr8_1 three_prime_UTR 8025652 8025757 8025652 ID=Msa1176120-mRNA-1:three_prime_utr;Parent=Msa1176120-mRNA-1
Gene Sequence

>Msa1176120

ATGATGTTTGAATTAGACAATATGGAATATAGTCAATATAGTTATTCAGCAGAAGCAGGAGAAGAAGAAACATACACAACTAGTAGCACATCTTCCATGAGAAAGAAGAAAAACAAGAATACAAAGAGGTTTAGTGATGAACAAATCAAATCATTGGAAACTATGTTTGAGACTGAGACAAGACTTGAACCAAGAAAGAAGTTGCAATTAGCTAGAGAGCTTGGATTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAACAAAAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATACAACAAACTTCAAAATAGTTACAATAATTTGGCTTCAAAGTTTGAATCTATGAAGAAGGAAAGACAAACATTACTAATACAGTTGCAGAAGCTGAATGATCTAATACAAAAGCCAATAGAGCAAAGTCAGAGTAGTTCACAAGTTAAAGAAGCAAACAGCATGGAAAGTGCAGCAGAAAATGGAGGAAAAATCAAATGTGAGGCTGAGGTGAAACCAAGTCCTTCAATAGAAAGATCAGAACATGTACTTGATGTTCTATCAGATGATGACACAAGCATAAAGGTTGAATACTTTGGTTTAGAAGATGAAACTGGTCTTATGAATTTTGCTGAACATGCTGATGGTTCTTTAACATCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATTTGTTAGGTCAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA
Protein sequence

>Msa1176120

MMFELDNMEYSQYSYSAEAGEEETYTTSSTSSMRKKKNKNTKRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESAAENGGKIKCEAEVKPSPSIERSEHVLDVLSDDDTSIKVEYFGLEDETGLMNFAEHADGSLTSPEDWSAFESNDLLGQSSCDYQWWDFWS*