AlfalfaGEDB | Msa1277440

M. sativa cultivar zhongmu-4 / Msa1277440

KEGG: K09338
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277440	AFV30231.1	99.595	247	1	0	1	247	1	247	0.0	506

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277440	sp\|P46897\|ATHB7_ARATH	53.070	228	86	6	40	247	32	258	4.04e-64	203

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277440	K4MNF8	99.595	247	1	0	1	247	1	247	0.0	506

TFs/TRs:

Gene ID	Type	Classification
Msa1277440	TF	HB-HD-ZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0662540	Msa1277440	0.802519	5.397485e-49	-8.615850e-47
Msa0127640	Msa1277440	0.808621	2.830512e-50	-8.615850e-47
Msa0222340	Msa1277440	0.815191	1.048860e-51	-8.615850e-47
Msa1236320	Msa1277440	0.942529	6.114899e-102	-8.615850e-47
Msa1277440	Msa1316250	0.947451	6.558703e-106	-8.615850e-47
Msa1277440	Msa1325290	0.804444	2.153905e-49	-8.615850e-47
Msa1277440	Msa1407600	0.802227	6.201344e-49	-8.615850e-47
Msa1277440	Msa1451150	0.801456	8.929308e-49	-8.615850e-47
Msa1041200	Msa1277440	0.806233	9.085897e-50	-8.615850e-47
Msa0256390	Msa1277440	0.802429	5.634525e-49	-8.615850e-47
Msa1176120	Msa1277440	0.920377	1.382507e-87	-8.615850e-47
Msa1190520	Msa1277440	0.823988	1.029527e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277440	MtrunA17_Chr8g0346251	96.774	248	7	1	1	247	1	248	1.97e-178	489
Msa1277440	MtrunA17_Chr3g0127511	43.062	209	113	3	42	247	40	245	4.70e-48	159
Msa1277440	MtrunA17_Chr6g0450991	53.125	96	45	0	42	137	69	164	1.02e-29	112
Msa1277440	MtrunA17_Chr8g0381741	48.148	108	56	0	42	149	56	163	3.27e-29	111
Msa1277440	MtrunA17_Chr6g0453021	50.000	112	47	2	21	132	86	188	1.35e-26	104
Msa1277440	MtrunA17_Chr3g0123691	38.547	179	97	6	20	194	44	213	2.23e-26	103
Msa1277440	MtrunA17_Chr8g0362151	40.945	127	70	1	8	134	50	171	4.92e-26	102
Msa1277440	MtrunA17_Chr5g0415941	48.571	105	53	1	42	145	89	193	6.59e-26	103
Msa1277440	MtrunA17_Chr8g0362751	37.222	180	90	6	42	204	91	264	2.93e-25	100
Msa1277440	MtrunA17_Chr4g0060031	42.478	113	62	1	42	154	97	206	6.41e-25	100
Msa1277440	MtrunA17_Chr5g0416391	40.984	122	72	0	13	134	50	171	7.36e-25	99.8
Msa1277440	MtrunA17_Chr1g0179581	52.381	84	33	1	42	125	30	106	3.07e-24	93.6
Msa1277440	MtrunA17_Chr3g0119291	47.253	91	48	0	42	132	61	151	1.12e-23	95.9
Msa1277440	MtrunA17_Chr7g0265521	48.352	91	40	1	42	132	65	148	6.29e-22	90.9
Msa1277440	MtrunA17_Chr7g0217111	50.000	90	38	1	43	132	83	165	2.98e-21	89.7
Msa1277440	MtrunA17_Chr5g0403701	51.852	81	34	1	28	108	46	121	3.22e-18	80.1
Msa1277440	MtrunA17_Chr5g0403691	51.852	81	34	1	28	108	46	121	1.05e-17	79.3
Msa1277440	MtrunA17_Chr4g0055851	44.578	83	46	0	43	125	123	205	2.54e-14	70.9
Msa1277440	MtrunA17_Chr7g0258831	40.741	108	59	1	18	125	143	245	4.76e-14	70.1
Msa1277440	MtrunA17_Chr4g0071411	36.975	119	67	2	43	160	91	202	5.96e-14	68.9
Msa1277440	MtrunA17_Chr1g0175651	36.667	120	72	1	6	125	124	239	9.23e-13	66.6
Msa1277440	MtrunA17_Chr5g0400781	35.200	125	70	3	43	163	126	243	1.71e-12	65.5
Msa1277440	MtrunA17_Chr5g0399491	42.169	83	48	0	43	125	139	221	7.33e-12	63.9
Msa1277440	MtrunA17_Chr2g0308611	41.111	90	50	1	39	125	196	285	1.06e-11	63.9
Msa1277440	MtrunA17_Chr4g0054421	42.169	83	48	0	43	125	130	212	1.72e-11	62.8
Msa1277440	MtrunA17_Chr3g0135331	31.707	123	80	2	43	162	148	269	2.19e-11	62.8
Msa1277440	MtrunA17_Chr8g0335131	42.169	83	48	0	43	125	149	231	3.41e-11	62.0
Msa1277440	MtrunA17_Chr1g0151971	40.964	83	49	0	43	125	133	215	6.01e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277440	AT2G46680.1	53.070	228	86	6	40	247	32	258	4.11e-65	203
Msa1277440	AT3G61890.1	55.238	210	82	5	43	247	33	235	3.49e-63	197
Msa1277440	AT2G46680.2	52.193	228	86	7	40	247	32	256	9.58e-62	194
Msa1277440	AT3G01470.1	44.531	128	70	1	42	168	70	197	5.72e-31	115
Msa1277440	AT2G22430.1	52.747	91	43	0	42	132	64	154	1.63e-28	110
Msa1277440	AT4G40060.1	50.549	91	45	0	42	132	61	151	3.44e-28	108
Msa1277440	AT5G65310.2	48.113	106	49	1	27	132	47	146	1.54e-27	107
Msa1277440	AT5G65310.1	48.113	106	49	1	27	132	65	164	2.22e-27	107
Msa1277440	AT5G15150.1	39.041	146	78	3	18	162	96	231	4.87e-26	103
Msa1277440	AT1G69780.1	45.946	111	55	2	22	132	72	177	6.62e-25	100
Msa1277440	AT3G01220.1	45.536	112	51	2	21	132	71	172	1.56e-24	99.4
Msa1277440	AT4G36740.2	57.746	71	30	0	42	112	58	128	2.45e-22	91.7
Msa1277440	AT4G36740.1	57.746	71	30	0	42	112	57	127	2.69e-22	91.7
Msa1277440	AT1G26960.1	47.788	113	46	3	20	132	57	156	1.56e-21	90.5
Msa1277440	AT2G18550.1	42.500	120	61	2	42	153	63	182	2.63e-21	89.4
Msa1277440	AT5G03790.1	44.792	96	46	1	42	137	79	167	3.73e-21	89.0
Msa1277440	AT1G27045.4	45.098	102	56	0	42	143	70	171	1.39e-20	87.8
Msa1277440	AT5G03790.2	45.263	95	52	0	42	136	79	173	1.77e-20	86.3
Msa1277440	AT5G66700.1	53.521	71	33	0	42	112	73	143	3.35e-20	86.3
Msa1277440	AT1G27045.5	48.810	84	43	0	42	125	27	110	3.04e-19	82.8
Msa1277440	AT1G27045.3	48.810	84	43	0	42	125	27	110	3.04e-19	82.8
Msa1277440	AT1G27045.2	48.810	84	43	0	42	125	19	102	3.14e-19	82.4
Msa1277440	AT1G27045.1	48.810	84	43	0	42	125	70	153	3.82e-19	83.6
Msa1277440	AT2G36610.1	41.176	102	48	2	39	132	70	167	5.28e-18	79.3
Msa1277440	AT5G53980.1	41.071	112	58	2	31	142	3	106	1.20e-16	75.1
Msa1277440	AT4G37790.1	40.964	83	49	0	43	125	129	211	1.42e-11	63.5
Msa1277440	AT2G22800.1	42.169	83	48	0	43	125	116	198	1.71e-11	63.2
Msa1277440	AT3G60390.1	41.772	79	46	0	43	121	165	243	1.90e-11	63.2
Msa1277440	AT2G44910.1	41.772	79	46	0	43	121	166	244	2.02e-11	63.2
Msa1277440	AT5G06710.1	39.759	83	50	0	43	125	193	275	2.86e-11	62.8
Msa1277440	AT2G01430.1	35.455	110	67	1	16	125	119	224	4.02e-11	62.0
Msa1277440	AT4G17460.1	41.772	79	46	0	43	121	138	216	4.93e-11	62.0
Msa1277440	AT4G16780.1	41.772	79	46	0	43	121	132	210	6.29e-11	61.6

Find 51 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAAAATAGTTACAATAATT+TGG	0.124744	8_3:-12852280	Msa1277440:CDS
AGGCTATTCTGGGGAGTTTA+TGG	0.159349	8_3:-12851237	Msa1277440:three_prime_UTR
TATCGCTTAAAAGGTCTATT+TGG	0.196716	8_3:+12851134	None:intergenic
CTACTCTGACTTTGCTCTAT+TGG	0.221851	8_3:+12851836	None:intergenic
GCTAATTGCAACTTCTTTCT+TGG	0.222692	8_3:+12852402	None:intergenic
AACTTTGGTTATCGCTTAAA+AGG	0.270500	8_3:+12851125	None:intergenic
ATTCAAACATCATATGAATT+AGG	0.288055	8_3:+12852601	None:intergenic
ATTATCAATGGTGGGACTTT+TGG	0.297638	8_3:-12851535	Msa1277440:CDS
CTCTGCGGTTTGATCATGTT+TGG	0.309960	8_3:-12851348	Msa1277440:three_prime_UTR
TTTGAATCAAATGATTTGTT+AGG	0.319546	8_3:-12851572	Msa1277440:CDS
GTTGACATTCGCCAATAGTT+AGG	0.329897	8_3:-12851094	Msa1277440:three_prime_UTR
AGCCAAGACAAGTTGCTATA+TGG	0.331941	8_3:-12852362	Msa1277440:CDS
GATGTTTGAATTAGACAATA+TGG	0.344720	8_3:-12852589	Msa1277440:CDS
CAACATAATCATTAGTTTGT+AGG	0.346723	8_3:-12851384	Msa1277440:three_prime_UTR
TCAAAAGCACTCCAATCTTC+TGG	0.368233	8_3:+12851590	None:intergenic
ATGGAAAGTGCAGCAGAAAA+TGG	0.377944	8_3:-12851788	Msa1277440:CDS
TGTTCTGATCTTTCCATTGA+AGG	0.384421	8_3:+12851728	None:intergenic
CTTTAACATCACCAGAAGAT+TGG	0.390865	8_3:-12851601	Msa1277440:CDS
CCCAAACACACCCTAACTAT+TGG	0.404121	8_3:+12851083	None:intergenic
TGATGAACAAATCAAATCAT+TGG	0.409448	8_3:-12852457	Msa1277440:CDS
TTTGGTTTAGAAGATGAAAC+TGG	0.409611	8_3:-12851656	Msa1277440:CDS
AGCATAAAAGTTGAATACTT+TGG	0.419671	8_3:-12851674	Msa1277440:CDS
GATCTTTCCATTGAAGGACT+TGG	0.420894	8_3:+12851734	None:intergenic
TGTCAACATTAAAAGAACTT+TGG	0.430634	8_3:+12851110	None:intergenic
TTCAAAACAAAAGAGCTAGA+TGG	0.440130	8_3:-12852338	Msa1277440:CDS
TTGCAATTAGCTAGAGAGCT+TGG	0.453561	8_3:-12852390	Msa1277440:CDS
AAAGTTTGAATCTATGAAGA+AGG	0.456244	8_3:-12852253	Msa1277440:CDS
AAGACAAACATTACTAATAC+AGG	0.463639	8_3:-12852229	Msa1277440:intron
TTGACATTCGCCAATAGTTA+GGG	0.471851	8_3:-12851093	Msa1277440:three_prime_UTR
AACCATATAGCAACTTGTCT+TGG	0.480304	8_3:+12852360	None:intergenic
GGTGAAACCAAGTCCTTCAA+TGG	0.505148	8_3:-12851741	Msa1277440:CDS
TATAGTTATTCAGCAGAAGC+AGG	0.509566	8_3:-12852555	Msa1277440:CDS
AATCAAGTTGTGATTATCAA+TGG	0.520398	8_3:-12851547	Msa1277440:CDS
CAAGTTGTGATTATCAATGG+TGG	0.557189	8_3:-12851544	Msa1277440:CDS
TTATTTGAGTTCTTATCATG+AGG	0.558369	8_3:+12852708	None:intergenic
AGTTTATGGAAGTAAGCTGA+TGG	0.580260	8_3:-12851223	Msa1277440:three_prime_UTR
ACAGAGGAGGCAAAATTATG+TGG	0.582377	8_3:-12851501	Msa1277440:three_prime_UTR
TATTTGAGTTCTTATCATGA+GGG	0.593798	8_3:+12852709	None:intergenic
AAGTTGTCAGGGGAAAATCA+AGG	0.603486	8_3:-12851426	Msa1277440:three_prime_UTR
AAGTTGTGATTATCAATGGT+GGG	0.604345	8_3:-12851543	Msa1277440:CDS
AGTTGTCAGGGGAAAATCAA+GGG	0.618503	8_3:-12851425	Msa1277440:three_prime_UTR
GGTCTTGAATGAAACAGAGG+AGG	0.619886	8_3:-12851514	Msa1277440:exon
TTTGGTCTTGAATGAAACAG+AGG	0.622140	8_3:-12851517	Msa1277440:exon
ATGCATGTATCTATATATGT+TGG	0.622370	8_3:+12852678	None:intergenic
AGTTAAAGAAGCAAACAGCA+TGG	0.635070	8_3:-12851807	Msa1277440:CDS
GTTTATGGAAGTAAGCTGAT+GGG	0.635413	8_3:-12851222	Msa1277440:three_prime_UTR
TTTGTTGAAGAAGTTGTCAG+GGG	0.642443	8_3:-12851436	Msa1277440:three_prime_UTR
AACATCATATGAATTAGGTG+AGG	0.651625	8_3:+12852606	None:intergenic
GAGGAGGCAAAATTATGTGG+AGG	0.659550	8_3:-12851498	Msa1277440:three_prime_UTR
GAAAGTGCAGCAGAAAATGG+AGG	0.672573	8_3:-12851785	Msa1277440:CDS
GATACATGCATATCATCACA+AGG	0.717524	8_3:-12852666	Msa1277440:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TCAAAATAGTTACAATAATT+TGG	-	chr8_3:12851526-12851545	Msa1277440:exon	15.0%
!!	TGCGAAATTATTATTAATAA+CGG	-	chr8_3:12851726-12851745	Msa1277440:CDS	15.0%
!!	TCAAAATAGTTACAATAATT+TGG	-	chr8_3:12851526-12851545	Msa1277440:exon	15.0%
!!	TGCGAAATTATTATTAATAA+CGG	-	chr8_3:12851726-12851745	Msa1277440:CDS	15.0%
!!	ATTCAAACATCATATGAATT+AGG	+	chr8_3:12851208-12851227	None:intergenic	20.0%
!!!	ATAAATTTGTTTGCTTAGAA+TGG	-	chr8_3:12851634-12851653	Msa1277440:CDS	20.0%
!!	GAAATTATTATTAATAACGG+TGG	-	chr8_3:12851729-12851748	Msa1277440:CDS	20.0%
!!	TAATCATATAGTAATTTGAC+TGG	-	chr8_3:12851901-12851920	Msa1277440:intron	20.0%
!!!	TTTGAATCAAATGATTTGTT+AGG	-	chr8_3:12852234-12852253	Msa1277440:CDS	20.0%
!!!	AAGTTATAAGTTGTTTTCAA+AGG	-	chr8_3:12852549-12852568	Msa1277440:CDS	20.0%
!!	ATTCAAACATCATATGAATT+AGG	+	chr8_3:12851208-12851227	None:intergenic	20.0%
!!!	ATAAATTTGTTTGCTTAGAA+TGG	-	chr8_3:12851634-12851653	Msa1277440:CDS	20.0%
!!	GAAATTATTATTAATAACGG+TGG	-	chr8_3:12851729-12851748	Msa1277440:CDS	20.0%
!!	TAATCATATAGTAATTTGAC+TGG	-	chr8_3:12851901-12851920	Msa1277440:intron	20.0%
!!!	TTTGAATCAAATGATTTGTT+AGG	-	chr8_3:12852234-12852253	Msa1277440:CDS	20.0%
!!!	AAGTTATAAGTTGTTTTCAA+AGG	-	chr8_3:12852549-12852568	Msa1277440:CDS	20.0%
!!	TATTTGAGTTCTTATCATGA+GGG	+	chr8_3:12851100-12851119	None:intergenic	25.0%
!!	TTATTTGAGTTCTTATCATG+AGG	+	chr8_3:12851101-12851120	None:intergenic	25.0%
!	ATGCATGTATCTATATATGT+TGG	+	chr8_3:12851131-12851150	None:intergenic	25.0%
!	GATGTTTGAATTAGACAATA+TGG	-	chr8_3:12851217-12851236	Msa1277440:three_prime_UTR	25.0%
!	AGAAAAACAAGAATACAAAG+AGG	-	chr8_3:12851321-12851340	Msa1277440:three_prime_UTR	25.0%
!	TGATGAACAAATCAAATCAT+TGG	-	chr8_3:12851349-12851368	Msa1277440:three_prime_UTR	25.0%
!	AAAGTTTGAATCTATGAAGA+AGG	-	chr8_3:12851553-12851572	Msa1277440:CDS	25.0%
!	AAGACAAACATTACTAATAC+AGG	-	chr8_3:12851577-12851596	Msa1277440:CDS	25.0%
!	ATCTTGTCAACATTTCAAAA+TGG	+	chr8_3:12851702-12851721	None:intergenic	25.0%
!	AGCATAAAAGTTGAATACTT+TGG	-	chr8_3:12852132-12852151	Msa1277440:intron	25.0%
!!	AATCAAGTTGTGATTATCAA+TGG	-	chr8_3:12852259-12852278	Msa1277440:CDS	25.0%
!!!	CAACATAATCATTAGTTTGT+AGG	-	chr8_3:12852422-12852441	Msa1277440:CDS	25.0%
!	TGTCAACATTAAAAGAACTT+TGG	+	chr8_3:12852699-12852718	None:intergenic	25.0%
!!	TATTTGAGTTCTTATCATGA+GGG	+	chr8_3:12851100-12851119	None:intergenic	25.0%
!!	TTATTTGAGTTCTTATCATG+AGG	+	chr8_3:12851101-12851120	None:intergenic	25.0%
!	ATGCATGTATCTATATATGT+TGG	+	chr8_3:12851131-12851150	None:intergenic	25.0%
!	GATGTTTGAATTAGACAATA+TGG	-	chr8_3:12851217-12851236	Msa1277440:three_prime_UTR	25.0%
!	AGAAAAACAAGAATACAAAG+AGG	-	chr8_3:12851321-12851340	Msa1277440:three_prime_UTR	25.0%
!	TGATGAACAAATCAAATCAT+TGG	-	chr8_3:12851349-12851368	Msa1277440:three_prime_UTR	25.0%
!	AAAGTTTGAATCTATGAAGA+AGG	-	chr8_3:12851553-12851572	Msa1277440:CDS	25.0%
!	AAGACAAACATTACTAATAC+AGG	-	chr8_3:12851577-12851596	Msa1277440:CDS	25.0%
!	ATCTTGTCAACATTTCAAAA+TGG	+	chr8_3:12851702-12851721	None:intergenic	25.0%
!	AGCATAAAAGTTGAATACTT+TGG	-	chr8_3:12852132-12852151	Msa1277440:intron	25.0%
!!	AATCAAGTTGTGATTATCAA+TGG	-	chr8_3:12852259-12852278	Msa1277440:CDS	25.0%
!!!	CAACATAATCATTAGTTTGT+AGG	-	chr8_3:12852422-12852441	Msa1277440:CDS	25.0%
!	TGTCAACATTAAAAGAACTT+TGG	+	chr8_3:12852699-12852718	None:intergenic	25.0%
	AACATCATATGAATTAGGTG+AGG	+	chr8_3:12851203-12851222	None:intergenic	30.0%
!!	CTTGTTTTTCTTCTTTCTCA+TGG	+	chr8_3:12851312-12851331	None:intergenic	30.0%
	TTCAAAACAAAAGAGCTAGA+TGG	-	chr8_3:12851468-12851487	Msa1277440:three_prime_UTR	30.0%
!	TTTGGTTTAGAAGATGAAAC+TGG	-	chr8_3:12852150-12852169	Msa1277440:intron	30.0%
	AAGTTGTGATTATCAATGGT+GGG	-	chr8_3:12852263-12852282	Msa1277440:CDS	30.0%
!	TTTTGTTGAAGAAGTTGTCA+GGG	-	chr8_3:12852369-12852388	Msa1277440:CDS	30.0%
!	TTGTTTTCAAAGGCTATTCT+GGG	-	chr8_3:12852559-12852578	Msa1277440:CDS	30.0%
	TATCGCTTAAAAGGTCTATT+TGG	+	chr8_3:12852675-12852694	None:intergenic	30.0%
	AACTTTGGTTATCGCTTAAA+AGG	+	chr8_3:12852684-12852703	None:intergenic	30.0%
	AACATCATATGAATTAGGTG+AGG	+	chr8_3:12851203-12851222	None:intergenic	30.0%
!!	CTTGTTTTTCTTCTTTCTCA+TGG	+	chr8_3:12851312-12851331	None:intergenic	30.0%
	TTCAAAACAAAAGAGCTAGA+TGG	-	chr8_3:12851468-12851487	Msa1277440:three_prime_UTR	30.0%
!	TTTGGTTTAGAAGATGAAAC+TGG	-	chr8_3:12852150-12852169	Msa1277440:intron	30.0%
	AAGTTGTGATTATCAATGGT+GGG	-	chr8_3:12852263-12852282	Msa1277440:CDS	30.0%
!	TTTTGTTGAAGAAGTTGTCA+GGG	-	chr8_3:12852369-12852388	Msa1277440:CDS	30.0%
!	TTGTTTTCAAAGGCTATTCT+GGG	-	chr8_3:12852559-12852578	Msa1277440:CDS	30.0%
	TATCGCTTAAAAGGTCTATT+TGG	+	chr8_3:12852675-12852694	None:intergenic	30.0%
	AACTTTGGTTATCGCTTAAA+AGG	+	chr8_3:12852684-12852703	None:intergenic	30.0%
	GATACATGCATATCATCACA+AGG	-	chr8_3:12851140-12851159	Msa1277440:three_prime_UTR	35.0%
!!!	AGGTGAGGAATGTTTTTTGA+GGG	+	chr8_3:12851188-12851207	None:intergenic	35.0%
!!!	TAGGTGAGGAATGTTTTTTG+AGG	+	chr8_3:12851189-12851208	None:intergenic	35.0%
	TATAGTTATTCAGCAGAAGC+AGG	-	chr8_3:12851251-12851270	Msa1277440:three_prime_UTR	35.0%
	GCTAATTGCAACTTCTTTCT+TGG	+	chr8_3:12851407-12851426	None:intergenic	35.0%
	AACCATATAGCAACTTGTCT+TGG	+	chr8_3:12851449-12851468	None:intergenic	35.0%
!	GATTGACTTTGTATCTTCAG+TGG	+	chr8_3:12851786-12851805	None:intergenic	35.0%
	CTAATAACCATCGTGTTCAT+CGG	+	chr8_3:12851828-12851847	None:intergenic	35.0%
	GATGAACACGATGGTTATTA+GGG	-	chr8_3:12851827-12851846	Msa1277440:CDS	35.0%
	AGTTAAAGAAGCAAACAGCA+TGG	-	chr8_3:12851999-12852018	Msa1277440:intron	35.0%
	TGGAGGAAAAATCAAATGTG+AGG	-	chr8_3:12852038-12852057	Msa1277440:intron	35.0%
	AAAAATCAAATGTGAGGCTG+AGG	-	chr8_3:12852044-12852063	Msa1277440:intron	35.0%
	TGTTCTGATCTTTCCATTGA+AGG	+	chr8_3:12852081-12852100	None:intergenic	35.0%
!	AATTTTGCTGAACATGCTGA+TGG	-	chr8_3:12852180-12852199	Msa1277440:intron	35.0%
	CTTTAACATCACCAGAAGAT+TGG	-	chr8_3:12852205-12852224	Msa1277440:intron	35.0%
	CAAGTTGTGATTATCAATGG+TGG	-	chr8_3:12852262-12852281	Msa1277440:CDS	35.0%
!!	ATTATCAATGGTGGGACTTT+TGG	-	chr8_3:12852271-12852290	Msa1277440:CDS	35.0%
!!	TTTGGTCTTGAATGAAACAG+AGG	-	chr8_3:12852289-12852308	Msa1277440:CDS	35.0%
!!	GTTTTGTTGAAGAAGTTGTC+AGG	-	chr8_3:12852368-12852387	Msa1277440:CDS	35.0%
	TTTGTTGAAGAAGTTGTCAG+GGG	-	chr8_3:12852370-12852389	Msa1277440:CDS	35.0%
!	GGAAATGATTTTCATCTCTG+CGG	-	chr8_3:12852443-12852462	Msa1277440:CDS	35.0%
!!	GTTGTTTTCAAAGGCTATTC+TGG	-	chr8_3:12852558-12852577	Msa1277440:CDS	35.0%
!	TGTTTTCAAAGGCTATTCTG+GGG	-	chr8_3:12852560-12852579	Msa1277440:CDS	35.0%
	AGTTTATGGAAGTAAGCTGA+TGG	-	chr8_3:12852583-12852602	Msa1277440:CDS	35.0%
	GTTTATGGAAGTAAGCTGAT+GGG	-	chr8_3:12852584-12852603	Msa1277440:CDS	35.0%
	TTGACATTCGCCAATAGTTA+GGG	-	chr8_3:12852713-12852732	Msa1277440:five_prime_UTR	35.0%
	GATACATGCATATCATCACA+AGG	-	chr8_3:12851140-12851159	Msa1277440:three_prime_UTR	35.0%
!!!	AGGTGAGGAATGTTTTTTGA+GGG	+	chr8_3:12851188-12851207	None:intergenic	35.0%
!!!	TAGGTGAGGAATGTTTTTTG+AGG	+	chr8_3:12851189-12851208	None:intergenic	35.0%
	TATAGTTATTCAGCAGAAGC+AGG	-	chr8_3:12851251-12851270	Msa1277440:three_prime_UTR	35.0%
	GCTAATTGCAACTTCTTTCT+TGG	+	chr8_3:12851407-12851426	None:intergenic	35.0%
	AACCATATAGCAACTTGTCT+TGG	+	chr8_3:12851449-12851468	None:intergenic	35.0%
!	GATTGACTTTGTATCTTCAG+TGG	+	chr8_3:12851786-12851805	None:intergenic	35.0%
	CTAATAACCATCGTGTTCAT+CGG	+	chr8_3:12851828-12851847	None:intergenic	35.0%
	GATGAACACGATGGTTATTA+GGG	-	chr8_3:12851827-12851846	Msa1277440:CDS	35.0%
	AGTTAAAGAAGCAAACAGCA+TGG	-	chr8_3:12851999-12852018	Msa1277440:intron	35.0%
	TGGAGGAAAAATCAAATGTG+AGG	-	chr8_3:12852038-12852057	Msa1277440:intron	35.0%
	AAAAATCAAATGTGAGGCTG+AGG	-	chr8_3:12852044-12852063	Msa1277440:intron	35.0%
	TGTTCTGATCTTTCCATTGA+AGG	+	chr8_3:12852081-12852100	None:intergenic	35.0%
!	AATTTTGCTGAACATGCTGA+TGG	-	chr8_3:12852180-12852199	Msa1277440:intron	35.0%
	CTTTAACATCACCAGAAGAT+TGG	-	chr8_3:12852205-12852224	Msa1277440:intron	35.0%
	CAAGTTGTGATTATCAATGG+TGG	-	chr8_3:12852262-12852281	Msa1277440:CDS	35.0%
!!	ATTATCAATGGTGGGACTTT+TGG	-	chr8_3:12852271-12852290	Msa1277440:CDS	35.0%
!!	TTTGGTCTTGAATGAAACAG+AGG	-	chr8_3:12852289-12852308	Msa1277440:CDS	35.0%
!!	GTTTTGTTGAAGAAGTTGTC+AGG	-	chr8_3:12852368-12852387	Msa1277440:CDS	35.0%
	TTTGTTGAAGAAGTTGTCAG+GGG	-	chr8_3:12852370-12852389	Msa1277440:CDS	35.0%
!	GGAAATGATTTTCATCTCTG+CGG	-	chr8_3:12852443-12852462	Msa1277440:CDS	35.0%
!!	GTTGTTTTCAAAGGCTATTC+TGG	-	chr8_3:12852558-12852577	Msa1277440:CDS	35.0%
!	TGTTTTCAAAGGCTATTCTG+GGG	-	chr8_3:12852560-12852579	Msa1277440:CDS	35.0%
	AGTTTATGGAAGTAAGCTGA+TGG	-	chr8_3:12852583-12852602	Msa1277440:CDS	35.0%
	GTTTATGGAAGTAAGCTGAT+GGG	-	chr8_3:12852584-12852603	Msa1277440:CDS	35.0%
	TTGACATTCGCCAATAGTTA+GGG	-	chr8_3:12852713-12852732	Msa1277440:five_prime_UTR	35.0%
	TTGCAATTAGCTAGAGAGCT+TGG	-	chr8_3:12851416-12851435	Msa1277440:three_prime_UTR	40.0%
	AGCCAAGACAAGTTGCTATA+TGG	-	chr8_3:12851444-12851463	Msa1277440:three_prime_UTR	40.0%
	CGATGAACACGATGGTTATT+AGG	-	chr8_3:12851826-12851845	Msa1277440:CDS	40.0%
	CTACTCTGACTTTGCTCTAT+TGG	+	chr8_3:12851973-12851992	None:intergenic	40.0%
!	ATGGAAAGTGCAGCAGAAAA+TGG	-	chr8_3:12852018-12852037	Msa1277440:intron	40.0%
	GATCTTTCCATTGAAGGACT+TGG	+	chr8_3:12852075-12852094	None:intergenic	40.0%
!!	TCAAAAGCACTCCAATCTTC+TGG	+	chr8_3:12852219-12852238	None:intergenic	40.0%
	ACAGAGGAGGCAAAATTATG+TGG	-	chr8_3:12852305-12852324	Msa1277440:CDS	40.0%
	AAGTTGTCAGGGGAAAATCA+AGG	-	chr8_3:12852380-12852399	Msa1277440:CDS	40.0%
	AGTTGTCAGGGGAAAATCAA+GGG	-	chr8_3:12852381-12852400	Msa1277440:CDS	40.0%
	GTTGACATTCGCCAATAGTT+AGG	-	chr8_3:12852712-12852731	Msa1277440:five_prime_UTR	40.0%
	TTGCAATTAGCTAGAGAGCT+TGG	-	chr8_3:12851416-12851435	Msa1277440:three_prime_UTR	40.0%
	AGCCAAGACAAGTTGCTATA+TGG	-	chr8_3:12851444-12851463	Msa1277440:three_prime_UTR	40.0%
	CGATGAACACGATGGTTATT+AGG	-	chr8_3:12851826-12851845	Msa1277440:CDS	40.0%
	CTACTCTGACTTTGCTCTAT+TGG	+	chr8_3:12851973-12851992	None:intergenic	40.0%
!	ATGGAAAGTGCAGCAGAAAA+TGG	-	chr8_3:12852018-12852037	Msa1277440:intron	40.0%
	GATCTTTCCATTGAAGGACT+TGG	+	chr8_3:12852075-12852094	None:intergenic	40.0%
!!	TCAAAAGCACTCCAATCTTC+TGG	+	chr8_3:12852219-12852238	None:intergenic	40.0%
	ACAGAGGAGGCAAAATTATG+TGG	-	chr8_3:12852305-12852324	Msa1277440:CDS	40.0%
	AAGTTGTCAGGGGAAAATCA+AGG	-	chr8_3:12852380-12852399	Msa1277440:CDS	40.0%
	AGTTGTCAGGGGAAAATCAA+GGG	-	chr8_3:12852381-12852400	Msa1277440:CDS	40.0%
	GTTGACATTCGCCAATAGTT+AGG	-	chr8_3:12852712-12852731	Msa1277440:five_prime_UTR	40.0%
	GTTCATCGGTATCAACTCAG+TGG	+	chr8_3:12851814-12851833	None:intergenic	45.0%
	GTTGATACCGATGAACACGA+TGG	-	chr8_3:12851818-12851837	Msa1277440:CDS	45.0%
!	GAAAGTGCAGCAGAAAATGG+AGG	-	chr8_3:12852021-12852040	Msa1277440:intron	45.0%
	GGTGAAACCAAGTCCTTCAA+TGG	-	chr8_3:12852065-12852084	Msa1277440:intron	45.0%
	GGTCTTGAATGAAACAGAGG+AGG	-	chr8_3:12852292-12852311	Msa1277440:CDS	45.0%
	GAGGAGGCAAAATTATGTGG+AGG	-	chr8_3:12852308-12852327	Msa1277440:CDS	45.0%
	CTCTGCGGTTTGATCATGTT+TGG	-	chr8_3:12852458-12852477	Msa1277440:CDS	45.0%
!	AGGCTATTCTGGGGAGTTTA+TGG	-	chr8_3:12852569-12852588	Msa1277440:CDS	45.0%
	GTTCATCGGTATCAACTCAG+TGG	+	chr8_3:12851814-12851833	None:intergenic	45.0%
	GTTGATACCGATGAACACGA+TGG	-	chr8_3:12851818-12851837	Msa1277440:CDS	45.0%
!	GAAAGTGCAGCAGAAAATGG+AGG	-	chr8_3:12852021-12852040	Msa1277440:intron	45.0%
	GGTGAAACCAAGTCCTTCAA+TGG	-	chr8_3:12852065-12852084	Msa1277440:intron	45.0%
	GGTCTTGAATGAAACAGAGG+AGG	-	chr8_3:12852292-12852311	Msa1277440:CDS	45.0%
	GAGGAGGCAAAATTATGTGG+AGG	-	chr8_3:12852308-12852327	Msa1277440:CDS	45.0%
	CTCTGCGGTTTGATCATGTT+TGG	-	chr8_3:12852458-12852477	Msa1277440:CDS	45.0%
!	AGGCTATTCTGGGGAGTTTA+TGG	-	chr8_3:12852569-12852588	Msa1277440:CDS	45.0%
!!	ATTAAAAATTAAAATTGAAT+TGG	+	chr8_3:12851679-12851698	None:intergenic	5.0%
!!	ATTAAAAATTAAAATTGAAT+TGG	+	chr8_3:12851679-12851698	None:intergenic	5.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	12851092	12852736	12851092	ID=Msa1277440;Name=Msa1277440
chr8_3	mRNA	12851092	12852736	12851092	ID=Msa1277440-mRNA-1;Parent=Msa1277440;Name=Msa1277440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123\|1\|1\|1\|1\|1\|2\|437\|247
chr8_3	exon	12851092	12851888	12851092	ID=Msa1277440-mRNA-1:exon:5166;Parent=Msa1277440-mRNA-1
chr8_3	exon	12852230	12852736	12852230	ID=Msa1277440-mRNA-1:exon:5165;Parent=Msa1277440-mRNA-1
chr8_3	five_prime_UTR	12852614	12852736	12852614	ID=Msa1277440-mRNA-1:five_prime_utr;Parent=Msa1277440-mRNA-1
chr8_3	CDS	12852230	12852613	12852230	ID=Msa1277440-mRNA-1:cds;Parent=Msa1277440-mRNA-1
chr8_3	CDS	12851529	12851888	12851529	ID=Msa1277440-mRNA-1:cds;Parent=Msa1277440-mRNA-1
chr8_3	three_prime_UTR	12851092	12851528	12851092	ID=Msa1277440-mRNA-1:three_prime_utr;Parent=Msa1277440-mRNA-1

Gene Sequence

>Msa1277440

ATGATGTTTGAATTAGACAATATGGAATATAGTCAATATAGTTATTCAGCAGAAGCAGGAGAAGAAGAAACATACACAACTAGTAGCACATCTTCCATGAGAAAGAAGAAAAACAAGAATACAAAGAGGTTTAGTGATGAACAAATCAAATCATTGGAAACTATGTTTGAGACTGAGACAAGACTTGAACCAAGAAAGAAGTTGCAATTAGCTAGAGAGCTTGGATTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAACAAAAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATACAACAAACTTCAAAATAGTTACAATAATTTGGCTTCAAAGTTTGAATCTATGAAGAAGGAAAGACAAACATTACTAATACAGTTGCAGAAGCTGAATGATCTAATACAAAAGCCAATAGAGCAAAGTCAGAGTAGTTCACAAGTTAAAGAAGCAAACAGCATGGAAAGTGCAGCAGAAAATGGAGGAAAAATCAAATGTGAGGCTGAGGTGAAACCAAGTCCTTCAATGGAAAGATCAGAACATGTACTTGATGTTCTATCAGATGATGATACAAGCATAAAAGTTGAATACTTTGGTTTAGAAGATGAAACTGGTCTTATGAATTTTGCTGAACATGCTGATGGTTCTTTAACATCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATTTGTTAGGTCAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA

Protein sequence

>Msa1277440

MMFELDNMEYSQYSYSAEAGEEETYTTSSTSSMRKKKNKNTKRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESAAENGGKIKCEAEVKPSPSMERSEHVLDVLSDDDTSIKVEYFGLEDETGLMNFAEHADGSLTSPEDWSAFESNDLLGQSSCDYQWWDFWS*