Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178190 | A0A072TNX6 | 92.634 | 448 | 14 | 3 | 1 | 429 | 1 | 448 | 0.0 | 819 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1039710 | Msa1178190 | -0.802561 | 5.291378e-49 | -8.615850e-47 |
| Msa1178190 | Msa1243100 | 0.883017 | 6.404690e-71 | -8.615850e-47 |
| Msa1178190 | Msa1304890 | -0.803667 | 3.124845e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178190 | MtrunA17_Chr8g0348961 | 92.634 | 448 | 14 | 3 | 1 | 429 | 1 | 448 | 0.0 | 819 |
| Msa1178190 | MtrunA17_Chr1g0203061 | 64.430 | 447 | 137 | 6 | 1 | 426 | 1 | 446 | 0.0 | 578 |
| Msa1178190 | MtrunA17_Chr3g0110381 | 51.802 | 444 | 178 | 10 | 1 | 415 | 1 | 437 | 3.41e-155 | 446 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1178190 | AT4G00500.1 | 63.474 | 449 | 140 | 7 | 1 | 426 | 1 | 448 | 0.0 | 560 |
| Msa1178190 | AT4G00500.2 | 63.474 | 449 | 140 | 7 | 1 | 426 | 1 | 448 | 0.0 | 560 |
| Msa1178190 | AT3G49050.1 | 57.294 | 473 | 156 | 7 | 1 | 427 | 1 | 473 | 0.0 | 550 |
| Msa1178190 | AT5G37710.1 | 50.897 | 446 | 182 | 7 | 1 | 424 | 1 | 431 | 1.33e-149 | 432 |
| Msa1178190 | AT5G37710.2 | 58.046 | 348 | 121 | 5 | 1 | 326 | 1 | 345 | 1.91e-137 | 398 |
Find 124 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTATATGTTGACGTTTA+TGG | 0.092686 | 8_1:-10858008 | Msa1178190:CDS |
| TGATAGAAAGAAATAATTTA+AGG | 0.167668 | 8_1:+10853594 | None:intergenic |
| GCATTATTTGCTATTAGTTT+TGG | 0.174137 | 8_1:-10853560 | Msa1178190:three_prime_UTR |
| GCTTCATAATCGCGACAAAT+TGG | 0.195008 | 8_1:-10857939 | Msa1178190:CDS |
| ATTGTAATTTAGAGCCTATT+TGG | 0.229749 | 8_1:-10853439 | Msa1178190:three_prime_UTR |
| ACTTATATGTTGACGTTTAT+GGG | 0.239710 | 8_1:-10858007 | Msa1178190:CDS |
| CATGGTGGATATGTTCATAA+TGG | 0.280337 | 8_1:-10858103 | Msa1178190:CDS |
| ATTGTGTCTCATGTGCTTAA+AGG | 0.289797 | 8_1:-10856534 | Msa1178190:CDS |
| CTATTTGGATTAAACTTCTT+AGG | 0.290416 | 8_1:-10853424 | Msa1178190:three_prime_UTR |
| ACTTGAGTGTGTTTATTGTC+TGG | 0.305050 | 8_1:-10858485 | Msa1178190:CDS |
| TTTCTTTCTATCAAGCTTCA+TGG | 0.309484 | 8_1:-10853584 | Msa1178190:three_prime_UTR |
| CAGGCTACGAGAGTGAAAAT+TGG | 0.313769 | 8_1:-10858423 | Msa1178190:CDS |
| CTTCATAATCGCGACAAATT+GGG | 0.318156 | 8_1:-10857938 | Msa1178190:CDS |
| CTAAGAAGTTTAATCCAAAT+AGG | 0.326933 | 8_1:+10853425 | None:intergenic |
| CCGATGTATGTCTCTCAATT+TGG | 0.330984 | 8_1:-10857873 | Msa1178190:CDS |
| GAAGATTTCCACCCATTGTT+AGG | 0.336238 | 8_1:-10855010 | Msa1178190:CDS |
| ATGGGACATTCACTTGGTGC+TGG | 0.338920 | 8_1:-10857989 | Msa1178190:CDS |
| AGATCGGAATATGGAGATTC+CGG | 0.339282 | 8_1:-10853895 | Msa1178190:CDS |
| GCTAGAGAAAGATCGGAATA+TGG | 0.341114 | 8_1:-10853904 | Msa1178190:CDS |
| TTGTCGAGCGAAAGCCCTTC+AGG | 0.380817 | 8_1:-10856439 | Msa1178190:intron |
| TTGTCTTGCGGAAGGATTAC+GGG | 0.385981 | 8_1:-10858270 | Msa1178190:CDS |
| ATGGTGGATATGTTCATAAT+GGG | 0.386158 | 8_1:-10858102 | Msa1178190:CDS |
| TGGGACATTCACTTGGTGCT+GGG | 0.386587 | 8_1:-10857988 | Msa1178190:CDS |
| CCTTCGGAGGGCAGTTGCTT+TGG | 0.387374 | 8_1:-10853808 | Msa1178190:CDS |
| CTACTGACCATGCCATCCTT+TGG | 0.397629 | 8_1:-10854932 | Msa1178190:CDS |
| GTGCGACAAATTCGTGGTAT+AGG | 0.400706 | 8_1:+10858373 | None:intergenic |
| TTTAAGTATCAGCTTCTGTT+TGG | 0.405504 | 8_1:-10853348 | None:intergenic |
| GCATACTCACCTTCCTCATA+TGG | 0.405824 | 8_1:-10853774 | Msa1178190:CDS |
| AGGCTACGAGAGTGAAAATT+GGG | 0.407242 | 8_1:-10858422 | Msa1178190:CDS |
| GTTATTGAAGGCAGCGGATT+GGG | 0.408048 | 8_1:-10858080 | Msa1178190:intron |
| CTTGAGTGTGTTTATTGTCT+GGG | 0.413771 | 8_1:-10858484 | Msa1178190:CDS |
| ATTGTCTGGGTTGTACTCGT+TGG | 0.414145 | 8_1:-10858471 | Msa1178190:CDS |
| GAAATTATACTGGCTGTTAG+TGG | 0.416596 | 8_1:-10858193 | Msa1178190:CDS |
| TTCATGAAATGTTCCATATG+AGG | 0.417496 | 8_1:+10853761 | None:intergenic |
| GTTATGGTATTAATCCTGAT+TGG | 0.417557 | 8_1:-10858294 | Msa1178190:CDS |
| ATATCATACTAAACTAAAAC+GGG | 0.420467 | 8_1:+10853502 | None:intergenic |
| TTGTCTGGGTTGTACTCGTT+GGG | 0.421207 | 8_1:-10858470 | Msa1178190:CDS |
| CATTGATGTCATTTATCTGT+GGG | 0.426287 | 8_1:-10858516 | None:intergenic |
| TGGGTTGTACTCGTTGGGCT+TGG | 0.426664 | 8_1:-10858465 | Msa1178190:CDS |
| TGGGCTCCCGAAGGTGGTTA+TGG | 0.429960 | 8_1:-10858310 | Msa1178190:intron |
| TTCACTTGGTGCTGGGGTGG+TGG | 0.432423 | 8_1:-10857981 | Msa1178190:CDS |
| ACCTCGGACAACCACTGCTC+TGG | 0.435017 | 8_1:-10857597 | Msa1178190:CDS |
| CTTGGACAAACGGAATTTCA+TGG | 0.437460 | 8_1:-10858121 | Msa1178190:CDS |
| TGATCGTTCGGAAATTATAC+TGG | 0.443999 | 8_1:-10858203 | Msa1178190:CDS |
| CGTGGACGACACAGGTCATA+TGG | 0.445994 | 8_1:-10853634 | Msa1178190:CDS |
| AATATCATACTAAACTAAAA+CGG | 0.449029 | 8_1:+10853501 | None:intergenic |
| ATTGTCTTGCGGAAGGATTA+CGG | 0.453840 | 8_1:-10858271 | Msa1178190:CDS |
| TGATCAAGGTATATCATGTA+TGG | 0.457810 | 8_1:+10858226 | None:intergenic |
| CAATAAACACACTCAAGTAT+AGG | 0.464088 | 8_1:+10858490 | None:intergenic |
| CGGCTGCGCAAAAGATGGTT+AGG | 0.467966 | 8_1:-10853875 | Msa1178190:CDS |
| TTCATAATCGCGACAAATTG+GGG | 0.469907 | 8_1:-10857937 | Msa1178190:CDS |
| TGATAACAAGCTTGGACAAA+CGG | 0.478078 | 8_1:-10858131 | Msa1178190:CDS |
| GGGACATTCACTTGGTGCTG+GGG | 0.479013 | 8_1:-10857987 | Msa1178190:CDS |
| CAAACTCTTCTGCAGTAGCT+AGG | 0.481650 | 8_1:+10858398 | None:intergenic |
| ACATTCACTTGGTGCTGGGG+TGG | 0.482845 | 8_1:-10857984 | Msa1178190:CDS |
| GCTTACATCGAGAGCCCGTT+GGG | 0.485898 | 8_1:+10854896 | None:intergenic |
| ATAACAAACGATCAGAAAGT+TGG | 0.487511 | 8_1:-10853683 | Msa1178190:CDS |
| ATACCTTGATCATGATCGTT+CGG | 0.489378 | 8_1:-10858215 | Msa1178190:CDS |
| GGTTATTGAAGGCAGCGGAT+TGG | 0.493396 | 8_1:-10858081 | Msa1178190:CDS |
| ATAAACGTCAACATATAAGT+TGG | 0.494177 | 8_1:+10858010 | None:intergenic |
| TTCCGCAAGACAATCCAATC+AGG | 0.503167 | 8_1:+10858280 | None:intergenic |
| TGTTCATAATGGGTTATTGA+AGG | 0.504548 | 8_1:-10858092 | Msa1178190:CDS |
| GAAAGTTGGAATGAATTTGT+CGG | 0.506851 | 8_1:-10853669 | Msa1178190:CDS |
| GATTGAGAAGGAATCCCAAC+GGG | 0.509870 | 8_1:-10854910 | Msa1178190:CDS |
| AAGAGTACCGTGCAGCCCTT+CGG | 0.515446 | 8_1:-10853824 | Msa1178190:CDS |
| CCAGGTGCATACAGACGCCT+TGG | 0.522285 | 8_1:+10856476 | None:intergenic |
| ACGTTTATGGGACATTCACT+TGG | 0.533534 | 8_1:-10857995 | Msa1178190:CDS |
| GGTACTGCTGTCCTAACAAT+GGG | 0.534930 | 8_1:+10854999 | None:intergenic |
| TTTCCGAACGATCATGATCA+AGG | 0.536303 | 8_1:+10858212 | None:intergenic |
| ATTGATGCTGAGGAAGACTC+TGG | 0.541221 | 8_1:-10853738 | Msa1178190:CDS |
| AGCTTACATCGAGAGCCCGT+TGG | 0.546689 | 8_1:+10854895 | None:intergenic |
| GATCAACTCTATCGTACTAC+AGG | 0.548222 | 8_1:-10857831 | Msa1178190:intron |
| AGTTAATGCTAGAGAAAGAT+CGG | 0.550817 | 8_1:-10853911 | Msa1178190:CDS |
| CTGCCCTCCGAAGGGCTGCA+CGG | 0.552923 | 8_1:+10853817 | None:intergenic |
| CAGGTGCATACAGACGCCTT+GGG | 0.556377 | 8_1:+10856477 | None:intergenic |
| AGTACCGTGCAGCCCTTCGG+AGG | 0.557733 | 8_1:-10853821 | Msa1178190:CDS |
| AAGATTGTGCGACAAATTCG+TGG | 0.558185 | 8_1:+10858367 | None:intergenic |
| CATACATCGGGCAGGAGCAA+TGG | 0.558494 | 8_1:+10857886 | None:intergenic |
| GCATTGATGTCATTTATCTG+TGG | 0.559899 | 8_1:-10858517 | None:intergenic |
| TGATTGGATTGTCTTGCGGA+AGG | 0.561618 | 8_1:-10858278 | Msa1178190:CDS |
| TGCCATCCTTTGGATTGAGA+AGG | 0.562134 | 8_1:-10854922 | Msa1178190:CDS |
| GATTCCGGCTGCGCAAAAGA+TGG | 0.564056 | 8_1:-10853880 | Msa1178190:CDS |
| ATGCGGAATGGGAGGTTCTG+AGG | 0.566241 | 8_1:-10858051 | Msa1178190:intron |
| TGATCAAACCTTCCATCGAC+AGG | 0.566884 | 8_1:+10854978 | None:intergenic |
| CCAAAGCAACTGCCCTCCGA+AGG | 0.567097 | 8_1:+10853808 | None:intergenic |
| CCAAGGCGTCTGTATGCACC+TGG | 0.569450 | 8_1:-10856476 | Msa1178190:CDS |
| TAATGGGTTATTGAAGGCAG+CGG | 0.572333 | 8_1:-10858086 | Msa1178190:CDS |
| CTTAAAGGATACTTGCACAC+TGG | 0.573680 | 8_1:-10856519 | Msa1178190:CDS |
| ATTTCATGAAATTGATGCTG+AGG | 0.574640 | 8_1:-10853748 | Msa1178190:CDS |
| TTCCTTCTCAATCCAAAGGA+TGG | 0.575356 | 8_1:+10854920 | None:intergenic |
| ATCCTGATTGGATTGTCTTG+CGG | 0.575742 | 8_1:-10858282 | Msa1178190:CDS |
| GGGATTCCTTCTCAATCCAA+AGG | 0.576786 | 8_1:+10854916 | None:intergenic |
| TTGAGAGACATACATCGGGC+AGG | 0.577619 | 8_1:+10857878 | None:intergenic |
| CAAATTGAGAGACATACATC+GGG | 0.583019 | 8_1:+10857874 | None:intergenic |
| AGAATAAACTTCGAGACCCA+AGG | 0.585107 | 8_1:-10856493 | Msa1178190:CDS |
| GAGGAAGGTGAGTATGCTTG+AGG | 0.590075 | 8_1:+10853780 | None:intergenic |
| CAAAGCAACTGCCCTCCGAA+GGG | 0.592141 | 8_1:+10853809 | None:intergenic |
| AGGTACTGCTGTCCTAACAA+TGG | 0.595170 | 8_1:+10854998 | None:intergenic |
| TGATCGTTTGTTATGAGACA+AGG | 0.595396 | 8_1:+10853692 | None:intergenic |
| TGTCGGACGCATGTTTGACG+TGG | 0.597332 | 8_1:-10853652 | Msa1178190:CDS |
| GAAGACTCTGGAAGATCTAG+TGG | 0.597825 | 8_1:-10853726 | Msa1178190:CDS |
| TAGTGGACTCAATTTAGCAA+AGG | 0.598653 | 8_1:-10858176 | Msa1178190:CDS |
| TCTCAATCCAAAGGATGGCA+TGG | 0.607183 | 8_1:+10854925 | None:intergenic |
| CAGCAGTACCTGTCGATGGA+AGG | 0.608153 | 8_1:-10854986 | Msa1178190:CDS |
| TCCAGAGCAGTGGTTGTCCG+AGG | 0.612433 | 8_1:+10857596 | None:intergenic |
| TGAAATGTTCCATATGAGGA+AGG | 0.619523 | 8_1:+10853765 | None:intergenic |
| ACTGCTGTCCTAACAATGGG+TGG | 0.627208 | 8_1:+10855002 | None:intergenic |
| CACATGAGACACAATAAACA+AGG | 0.628531 | 8_1:+10856542 | None:intergenic |
| ATGTTTGACGTGGACGACAC+AGG | 0.631845 | 8_1:-10853642 | Msa1178190:CDS |
| GTAGACGCTTTCCAGAGCAG+TGG | 0.632377 | 8_1:+10857586 | None:intergenic |
| CCAAATTGAGAGACATACAT+CGG | 0.633196 | 8_1:+10857873 | None:intergenic |
| ACAATGTGATAGAGACGACC+AGG | 0.636901 | 8_1:+10856458 | None:intergenic |
| CAATTTGGCTGTAAGATATG+CGG | 0.643247 | 8_1:-10857858 | Msa1178190:CDS |
| AGGACAGCAGTACCTGTCGA+TGG | 0.651084 | 8_1:-10854990 | Msa1178190:CDS |
| GGATTGAGAAGGAATCCCAA+CGG | 0.658153 | 8_1:-10854911 | Msa1178190:CDS |
| TGTCTTGCGGAAGGATTACG+GGG | 0.660199 | 8_1:-10858269 | Msa1178190:CDS |
| AGCACCATACTGTACCTGAA+GGG | 0.668622 | 8_1:+10856425 | None:intergenic |
| AAGGATTACGGGGATAACCG+AGG | 0.672435 | 8_1:-10858259 | Msa1178190:CDS |
| GGTTCTGAGGAAGTTAATAG+CGG | 0.704402 | 8_1:-10858038 | Msa1178190:CDS |
| TGTATGGAGTAACACAACCT+CGG | 0.706360 | 8_1:+10858242 | None:intergenic |
| GGACAAACGGAATTTCATGG+TGG | 0.722297 | 8_1:-10858118 | Msa1178190:CDS |
| GGCTACGAGAGTGAAAATTG+GGG | 0.726107 | 8_1:-10858421 | Msa1178190:CDS |
| TCTAAATTACAATATTCACA+TGG | 0.730026 | 8_1:+10853449 | None:intergenic |
| ATTGGGGATACAGAGAGACA+AGG | 0.732263 | 8_1:-10857921 | Msa1178190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTAAAATTCATAATTT+TGG | + | chr8_1:10855566-10855585 | None:intergenic | 10.0% |
| !!! | TTTTTAAAATCTAAAACAAA+CGG | + | chr8_1:10855688-10855707 | None:intergenic | 10.0% |
| !!! | TGTTTTAGATTTTAAAAAAA+TGG | - | chr8_1:10855690-10855709 | Msa1178190:intron | 10.0% |
| !! | ATATTATATACAACTAATAA+AGG | + | chr8_1:10856584-10856603 | None:intergenic | 10.0% |
| !! | AGTAAGTTTATAATAACAAA+AGG | + | chr8_1:10854067-10854086 | None:intergenic | 15.0% |
| !! | ATATAAAAAATACATTCAGT+AGG | + | chr8_1:10854787-10854806 | None:intergenic | 15.0% |
| !! | TTTAATTAAAGTGACATTAA+TGG | - | chr8_1:10855001-10855020 | Msa1178190:CDS | 15.0% |
| !!! | TTTTAAAATCTAAAACAAAC+GGG | + | chr8_1:10855687-10855706 | None:intergenic | 15.0% |
| !!! | TTCCTTTGTATTTTTAAAAA+TGG | - | chr8_1:10855716-10855735 | Msa1178190:intron | 15.0% |
| !!! | ATCCATTTTTAAAAATACAA+AGG | + | chr8_1:10855721-10855740 | None:intergenic | 15.0% |
| !!! | AAATTTTGTGATTTTTACTA+TGG | + | chr8_1:10855854-10855873 | None:intergenic | 15.0% |
| !!! | TTTAAGATAAACTATTCAAA+CGG | - | chr8_1:10856008-10856027 | Msa1178190:intron | 15.0% |
| !!! | TTTTAACAAAGAAATTTTCA+AGG | + | chr8_1:10856053-10856072 | None:intergenic | 15.0% |
| !!! | GCTTTTTTTAAAATAGATTT+TGG | + | chr8_1:10856103-10856122 | None:intergenic | 15.0% |
| !! | TACTCTTGTAAAAATAAAAA+TGG | - | chr8_1:10856532-10856551 | Msa1178190:CDS | 15.0% |
| !! | ACTCTTGTAAAAATAAAAAT+GGG | - | chr8_1:10856533-10856552 | Msa1178190:CDS | 15.0% |
| !! | AAAAAAAAAAAACACAACAA+GGG | + | chr8_1:10857365-10857384 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAACACAACA+AGG | + | chr8_1:10857366-10857385 | None:intergenic | 15.0% |
| !! | AATTTAGACAACAATTTATA+TGG | + | chr8_1:10857780-10857799 | None:intergenic | 15.0% |
| !! | AAATAATAATTAAAACCTTG+AGG | + | chr8_1:10857892-10857911 | None:intergenic | 15.0% |
| !! | TGATAGAAAGAAATAATTTA+AGG | + | chr8_1:10858270-10858289 | None:intergenic | 15.0% |
| !! | AATATCATACTAAACTAAAA+CGG | + | chr8_1:10858363-10858382 | None:intergenic | 15.0% |
| !! | AAATTAATTGTTGATGTCTT+CGG | + | chr8_1:10854364-10854383 | None:intergenic | 20.0% |
| !! | AGTTCAGTTGAAATATATAA+TGG | - | chr8_1:10854592-10854611 | Msa1178190:intron | 20.0% |
| !! | GTTCAGTTGAAATATATAAT+GGG | - | chr8_1:10854593-10854612 | Msa1178190:intron | 20.0% |
| !! | AGATGCAAATTAATGAATAA+TGG | + | chr8_1:10854858-10854877 | None:intergenic | 20.0% |
| !!! | ATATGATATTCTTTTTTCCT+CGG | - | chr8_1:10854893-10854912 | Msa1178190:intron | 20.0% |
| !!! | AATTTTTCATGAATATGCAT+TGG | - | chr8_1:10855167-10855186 | Msa1178190:intron | 20.0% |
| !! | ATGAAAGAAATAACAATGTT+TGG | + | chr8_1:10855229-10855248 | None:intergenic | 20.0% |
| !!! | AAACATTGTTATTTCTTTCA+TGG | - | chr8_1:10855228-10855247 | Msa1178190:intron | 20.0% |
| !!! | TATAATAAGTTTTGGTCATT+TGG | - | chr8_1:10856237-10856256 | Msa1178190:intron | 20.0% |
| !! | ACGCATTGAATTTAATAATT+TGG | + | chr8_1:10856774-10856793 | None:intergenic | 20.0% |
| !! | TAGTTAATATGTTAACTGAA+TGG | - | chr8_1:10857502-10857521 | Msa1178190:intron | 20.0% |
| !!! | CATTATTTGCTATTAGTTTT+GGG | - | chr8_1:10858302-10858321 | Msa1178190:intron | 20.0% |
| !! | ATATCATACTAAACTAAAAC+GGG | + | chr8_1:10858362-10858381 | None:intergenic | 20.0% |
| !! | TCTAAATTACAATATTCACA+TGG | + | chr8_1:10858415-10858434 | None:intergenic | 20.0% |
| ! | ATAAACGTCAACATATAAGT+TGG | + | chr8_1:10853854-10853873 | None:intergenic | 25.0% |
| ! | AACTTATATGTTGACGTTTA+TGG | - | chr8_1:10853853-10853872 | Msa1178190:CDS | 25.0% |
| ! | ACTTATATGTTGACGTTTAT+GGG | - | chr8_1:10853854-10853873 | Msa1178190:CDS | 25.0% |
| ! | TTGATAGATAAGAAATCATG+AGG | + | chr8_1:10854179-10854198 | None:intergenic | 25.0% |
| ! | AGAATATCATATTAACCAGT+TGG | + | chr8_1:10854885-10854904 | None:intergenic | 25.0% |
| ! | CTAAAATCTGTGAATAAATC+AGG | + | chr8_1:10854932-10854951 | None:intergenic | 25.0% |
| !! | CTGATTTATTCACAGATTTT+AGG | - | chr8_1:10854930-10854949 | Msa1178190:CDS | 25.0% |
| !!! | AGATTTTAGGATTTGTTGAA+TGG | - | chr8_1:10854943-10854962 | Msa1178190:CDS | 25.0% |
| !! | ATTGAAAATCTTATTTCCTG+TGG | + | chr8_1:10855150-10855169 | None:intergenic | 25.0% |
| ! | TCTTTGTAACTTTCTAATCA+TGG | - | chr8_1:10855595-10855614 | Msa1178190:intron | 25.0% |
| ! | TAAGAAGAGTCAATTAATTG+CGG | - | chr8_1:10855625-10855644 | Msa1178190:intron | 25.0% |
| ! | AACATGATGAATTTGATCTA+AGG | - | chr8_1:10855651-10855670 | Msa1178190:intron | 25.0% |
| ! | ACATGATGAATTTGATCTAA+GGG | - | chr8_1:10855652-10855671 | Msa1178190:intron | 25.0% |
| ! | TAACCAAATGATGAAATACT+TGG | - | chr8_1:10855977-10855996 | Msa1178190:intron | 25.0% |
| ! | ATTCCAAGTATTTCATCATT+TGG | + | chr8_1:10855983-10856002 | None:intergenic | 25.0% |
| !! | TTCATAAGATTTTTGCTGAA+AGG | - | chr8_1:10856169-10856188 | Msa1178190:intron | 25.0% |
| !!! | TGATTTTTTTCTTCTCAAGT+TGG | - | chr8_1:10856267-10856286 | Msa1178190:intron | 25.0% |
| ! | AACACATCAACACAATAATT+TGG | - | chr8_1:10856399-10856418 | Msa1178190:intron | 25.0% |
| !! | AACCTTATACAACTTTTCTA+TGG | + | chr8_1:10856560-10856579 | None:intergenic | 25.0% |
| ! | ATTGTTCATAATAGAACAAC+TGG | - | chr8_1:10856621-10856640 | Msa1178190:intron | 25.0% |
| ! | AAGTTTACCTCACTAAATTA+CGG | - | chr8_1:10856700-10856719 | Msa1178190:intron | 25.0% |
| !!! | CTTAATTCATTTTGAAACTC+TGG | - | chr8_1:10857062-10857081 | Msa1178190:intron | 25.0% |
| ! | AAGTTCAAACCAATATTTGT+TGG | - | chr8_1:10857107-10857126 | Msa1178190:intron | 25.0% |
| !!! | CCTTATTTTCCAACAAATAT+TGG | + | chr8_1:10857119-10857138 | None:intergenic | 25.0% |
| !! | CCAATATTTGTTGGAAAATA+AGG | - | chr8_1:10857116-10857135 | Msa1178190:intron | 25.0% |
| ! | ATATCTCTACAAATAGAAAC+TGG | + | chr8_1:10857211-10857230 | None:intergenic | 25.0% |
| ! | GTTAATGCAGTTTAAATACA+TGG | + | chr8_1:10857758-10857777 | None:intergenic | 25.0% |
| !!! | GCATTATTTGCTATTAGTTT+TGG | - | chr8_1:10858301-10858320 | Msa1178190:intron | 25.0% |
| !! | ATTGTAATTTAGAGCCTATT+TGG | - | chr8_1:10858422-10858441 | Msa1178190:CDS | 25.0% |
| ! | CTAAGAAGTTTAATCCAAAT+AGG | + | chr8_1:10858439-10858458 | None:intergenic | 25.0% |
| ! | CTATTTGGATTAAACTTCTT+AGG | - | chr8_1:10858437-10858456 | Msa1178190:CDS | 25.0% |
| CAATAAACACACTCAAGTAT+AGG | + | chr8_1:10853374-10853393 | None:intergenic | 30.0% | |
| AAAAAATGTCTATACAGTGC+AGG | - | chr8_1:10853419-10853438 | Msa1178190:three_prime_UTR | 30.0% | |
| ATTAATACCATAACCACCTT+CGG | + | chr8_1:10853561-10853580 | None:intergenic | 30.0% | |
| GTTATGGTATTAATCCTGAT+TGG | - | chr8_1:10853567-10853586 | Msa1178190:three_prime_UTR | 30.0% | |
| TGATCAAGGTATATCATGTA+TGG | + | chr8_1:10853638-10853657 | None:intergenic | 30.0% | |
| !! | ATGGTGGATATGTTCATAAT+GGG | - | chr8_1:10853759-10853778 | Msa1178190:CDS | 30.0% |
| !! | TGTTCATAATGGGTTATTGA+AGG | - | chr8_1:10853769-10853788 | Msa1178190:CDS | 30.0% |
| CAATAAAACTGAACTGAAGT+CGG | + | chr8_1:10854329-10854348 | None:intergenic | 30.0% | |
| TTCATGCTTCAAATCCAAAA+GGG | - | chr8_1:10854627-10854646 | Msa1178190:intron | 30.0% | |
| AGCTTAAAGCTGTTAAGTTT+AGG | + | chr8_1:10854695-10854714 | None:intergenic | 30.0% | |
| GTTCAGCTGATATGATAAAT+AGG | + | chr8_1:10854811-10854830 | None:intergenic | 30.0% | |
| ! | CTGTGAATAAATCAGGTTTT+CGG | + | chr8_1:10854925-10854944 | None:intergenic | 30.0% |
| ! | TCATTTTACAAGTGTCTCAA+AGG | - | chr8_1:10855024-10855043 | Msa1178190:intron | 30.0% |
| ! | CATTTTACAAGTGTCTCAAA+GGG | - | chr8_1:10855025-10855044 | Msa1178190:intron | 30.0% |
| ! | ATTTTACAAGTGTCTCAAAG+GGG | - | chr8_1:10855026-10855045 | Msa1178190:intron | 30.0% |
| ! | TAAATTCAGCTTTTGCCATT+AGG | - | chr8_1:10855196-10855215 | Msa1178190:intron | 30.0% |
| TTTCTTTCATGGTTATGCAT+TGG | - | chr8_1:10855239-10855258 | Msa1178190:intron | 30.0% | |
| CATGATGAATTTGATCTAAG+GGG | - | chr8_1:10855653-10855672 | Msa1178190:intron | 30.0% | |
| ! | AATTTGATCTAAGGGGATTT+TGG | - | chr8_1:10855660-10855679 | Msa1178190:intron | 30.0% |
| ! | ATTTGATCTAAGGGGATTTT+GGG | - | chr8_1:10855661-10855680 | Msa1178190:intron | 30.0% |
| CTTGAGAAGAAAAAAATCAC+AGG | + | chr8_1:10856266-10856285 | None:intergenic | 30.0% | |
| TTGAATGTAACTACATGTGT+CGG | - | chr8_1:10856435-10856454 | Msa1178190:intron | 30.0% | |
| ! | TTCAATTTGAAGTGTCAATG+CGG | - | chr8_1:10856500-10856519 | Msa1178190:CDS | 30.0% |
| GTCCATAGAAAAGTTGTATA+AGG | - | chr8_1:10856555-10856574 | Msa1178190:intron | 30.0% | |
| TTTACTGCAACATTTAAGTG+TGG | + | chr8_1:10857289-10857308 | None:intergenic | 30.0% | |
| TTTAGACATCTGCAAAATCA+TGG | + | chr8_1:10857583-10857602 | None:intergenic | 30.0% | |
| AGTTAATGCTAGAGAAAGAT+CGG | - | chr8_1:10857950-10857969 | Msa1178190:CDS | 30.0% | |
| TTCATGAAATGTTCCATATG+AGG | + | chr8_1:10858103-10858122 | None:intergenic | 30.0% | |
| ATTTCATGAAATTGATGCTG+AGG | - | chr8_1:10858113-10858132 | Msa1178190:CDS | 30.0% | |
| ATAACAAACGATCAGAAAGT+TGG | - | chr8_1:10858178-10858197 | Msa1178190:CDS | 30.0% | |
| GAAAGTTGGAATGAATTTGT+CGG | - | chr8_1:10858192-10858211 | Msa1178190:CDS | 30.0% | |
| TTTCTTTCTATCAAGCTTCA+TGG | - | chr8_1:10858277-10858296 | Msa1178190:CDS | 30.0% | |
| ACTTGAGTGTGTTTATTGTC+TGG | - | chr8_1:10853376-10853395 | Msa1178190:three_prime_UTR | 35.0% | |
| CTTGAGTGTGTTTATTGTCT+GGG | - | chr8_1:10853377-10853396 | Msa1178190:three_prime_UTR | 35.0% | |
| TTAATACCATAACCACCTTC+GGG | + | chr8_1:10853560-10853579 | None:intergenic | 35.0% | |
| ATACCTTGATCATGATCGTT+CGG | - | chr8_1:10853646-10853665 | Msa1178190:CDS | 35.0% | |
| TGATCGTTCGGAAATTATAC+TGG | - | chr8_1:10853658-10853677 | Msa1178190:CDS | 35.0% | |
| ! | GAAATTATACTGGCTGTTAG+TGG | - | chr8_1:10853668-10853687 | Msa1178190:CDS | 35.0% |
| !! | TAGTGGACTCAATTTAGCAA+AGG | - | chr8_1:10853685-10853704 | Msa1178190:CDS | 35.0% |
| !! | GTTTTGCTTGATAACAAGCT+TGG | - | chr8_1:10853722-10853741 | Msa1178190:CDS | 35.0% |
| TGATAACAAGCTTGGACAAA+CGG | - | chr8_1:10853730-10853749 | Msa1178190:CDS | 35.0% | |
| !! | CATGGTGGATATGTTCATAA+TGG | - | chr8_1:10853758-10853777 | Msa1178190:CDS | 35.0% |
| CTTCATAATCGCGACAAATT+GGG | - | chr8_1:10853923-10853942 | Msa1178190:intron | 35.0% | |
| TTCATAATCGCGACAAATTG+GGG | - | chr8_1:10853924-10853943 | Msa1178190:intron | 35.0% | |
| CAAATTGAGAGACATACATC+GGG | + | chr8_1:10853990-10854009 | None:intergenic | 35.0% | |
| CCAAATTGAGAGACATACAT+CGG | + | chr8_1:10853991-10854010 | None:intergenic | 35.0% | |
| CAATTTGGCTGTAAGATATG+CGG | - | chr8_1:10854003-10854022 | Msa1178190:intron | 35.0% | |
| AGAACCTAACCATAAAAGAG+AGG | - | chr8_1:10854151-10854170 | Msa1178190:intron | 35.0% | |
| GAACCTAACCATAAAAGAGA+GGG | - | chr8_1:10854152-10854171 | Msa1178190:intron | 35.0% | |
| !! | ACTTGTTTTTCTTCCTAAGC+AGG | - | chr8_1:10854231-10854250 | Msa1178190:intron | 35.0% |
| CTTAGTTTAACTACGCTCAA+GGG | + | chr8_1:10854574-10854593 | None:intergenic | 35.0% | |
| ACTTAGTTTAACTACGCTCA+AGG | + | chr8_1:10854575-10854594 | None:intergenic | 35.0% | |
| TTGAAGCATGAACTAAGTGT+AGG | + | chr8_1:10854619-10854638 | None:intergenic | 35.0% | |
| GTTCATGCTTCAAATCCAAA+AGG | - | chr8_1:10854626-10854645 | Msa1178190:intron | 35.0% | |
| AAAAGGGATTGTACTTGACA+GGG | - | chr8_1:10854643-10854662 | Msa1178190:intron | 35.0% | |
| AAGTAAGTAGTGACTGATAG+AGG | + | chr8_1:10854750-10854769 | None:intergenic | 35.0% | |
| AATTTGCATCTGATTCCAAC+TGG | - | chr8_1:10854867-10854886 | Msa1178190:intron | 35.0% | |
| TAAGTGATAAGAGCTTAACC+TGG | + | chr8_1:10855086-10855105 | None:intergenic | 35.0% | |
| CACATGAGACACAATAAACA+AGG | + | chr8_1:10855322-10855341 | None:intergenic | 35.0% | |
| ATTGTGTCTCATGTGCTTAA+AGG | - | chr8_1:10855327-10855346 | Msa1178190:intron | 35.0% | |
| TCGTCTTTGTTAGTTCAGTA+AGG | + | chr8_1:10855511-10855530 | None:intergenic | 35.0% | |
| TGGATTACATAATGACCACA+AGG | + | chr8_1:10855546-10855565 | None:intergenic | 35.0% | |
| ATATCGTGTAAATTCTGCTC+AGG | - | chr8_1:10856124-10856143 | Msa1178190:intron | 35.0% | |
| ! | TTCCAAACCCAATCATTTTG+TGG | - | chr8_1:10856323-10856342 | Msa1178190:intron | 35.0% |
| ! | TCCAAACCCAATCATTTTGT+GGG | - | chr8_1:10856324-10856343 | Msa1178190:intron | 35.0% |
| ! | AAAGTGCCAGTTATGAAACA+CGG | - | chr8_1:10856360-10856379 | Msa1178190:intron | 35.0% |
| TTGTATCCGTGTTTCATAAC+TGG | + | chr8_1:10856369-10856388 | None:intergenic | 35.0% | |
| CATCAAACCGTAATTTAGTG+AGG | + | chr8_1:10856710-10856729 | None:intergenic | 35.0% | |
| !! | TGCAGCAGTAATTTCTAGTT+TGG | - | chr8_1:10856809-10856828 | Msa1178190:intron | 35.0% |
| TTCTACCAAAACAGTAGACA+TGG | - | chr8_1:10857016-10857035 | Msa1178190:intron | 35.0% | |
| AAGTTTACACCTGAAAATCG+TGG | - | chr8_1:10857637-10857656 | Msa1178190:intron | 35.0% | |
| ! | GTGGTTGATGTTCAAAATCA+TGG | - | chr8_1:10857656-10857675 | Msa1178190:intron | 35.0% |
| GGTTAATTGTGTTCAGTTGA+TGG | - | chr8_1:10857677-10857696 | Msa1178190:intron | 35.0% | |
| ACATGGTTAATCATGTTCAG+TGG | + | chr8_1:10857741-10857760 | None:intergenic | 35.0% | |
| GTTGAATTCTTTCTACCTCA+AGG | - | chr8_1:10857874-10857893 | Msa1178190:CDS | 35.0% | |
| TGAAATGTTCCATATGAGGA+AGG | + | chr8_1:10858099-10858118 | None:intergenic | 35.0% | |
| !! | TGATCGTTTGTTATGAGACA+AGG | + | chr8_1:10858172-10858191 | None:intergenic | 35.0% |
| !!! | TTGCTATTAGTTTTGGGTCA+AGG | - | chr8_1:10858308-10858327 | Msa1178190:intron | 35.0% |
| !!! | TGCTATTAGTTTTGGGTCAA+GGG | - | chr8_1:10858309-10858328 | Msa1178190:intron | 35.0% |
| !!! | TTGTGATGCTCATTTTAGCT+TGG | - | chr8_1:10858386-10858405 | Msa1178190:CDS | 35.0% |
| AGGCTACGAGAGTGAAAATT+GGG | - | chr8_1:10853439-10853458 | Msa1178190:three_prime_UTR | 40.0% | |
| AAGATTGTGCGACAAATTCG+TGG | + | chr8_1:10853497-10853516 | None:intergenic | 40.0% | |
| ATGATATTCGTAACCCTCAG+TGG | - | chr8_1:10853531-10853550 | Msa1178190:three_prime_UTR | 40.0% | |
| TGATATTCGTAACCCTCAGT+GGG | - | chr8_1:10853532-10853551 | Msa1178190:three_prime_UTR | 40.0% | |
| ATCCTGATTGGATTGTCTTG+CGG | - | chr8_1:10853579-10853598 | Msa1178190:three_prime_UTR | 40.0% | |
| ATTGTCTTGCGGAAGGATTA+CGG | - | chr8_1:10853590-10853609 | Msa1178190:three_prime_UTR | 40.0% | |
| TGTATGGAGTAACACAACCT+CGG | + | chr8_1:10853622-10853641 | None:intergenic | 40.0% | |
| TTTCCGAACGATCATGATCA+AGG | + | chr8_1:10853652-10853671 | None:intergenic | 40.0% | |
| CTTGGACAAACGGAATTTCA+TGG | - | chr8_1:10853740-10853759 | Msa1178190:CDS | 40.0% | |
| !! | TAATGGGTTATTGAAGGCAG+CGG | - | chr8_1:10853775-10853794 | Msa1178190:CDS | 40.0% |
| ! | ATTGGGTTTTTGATGCGGAA+TGG | - | chr8_1:10853798-10853817 | Msa1178190:CDS | 40.0% |
| ! | TTGGGTTTTTGATGCGGAAT+GGG | - | chr8_1:10853799-10853818 | Msa1178190:CDS | 40.0% |
| !! | GGTTCTGAGGAAGTTAATAG+CGG | - | chr8_1:10853823-10853842 | Msa1178190:CDS | 40.0% |
| ACGTTTATGGGACATTCACT+TGG | - | chr8_1:10853866-10853885 | Msa1178190:CDS | 40.0% | |
| GCTTCATAATCGCGACAAAT+TGG | - | chr8_1:10853922-10853941 | Msa1178190:intron | 40.0% | |
| CCGATGTATGTCTCTCAATT+TGG | - | chr8_1:10853988-10854007 | Msa1178190:intron | 40.0% | |
| GATCAACTCTATCGTACTAC+AGG | - | chr8_1:10854030-10854049 | Msa1178190:intron | 40.0% | |
| AACTCTATCGTACTACAGGT+CGG | - | chr8_1:10854034-10854053 | Msa1178190:intron | 40.0% | |
| GGTAAAAAATCGTCCTGCTT+AGG | + | chr8_1:10854247-10854266 | None:intergenic | 40.0% | |
| !!! | AGCAGGACGATTTTTTACCT+CGG | - | chr8_1:10854248-10854267 | Msa1178190:intron | 40.0% |
| GTTATCAAATTGTCGCATGG+TGG | - | chr8_1:10854480-10854499 | Msa1178190:intron | 40.0% | |
| ! | CTGTCAAGTACAATCCCTTT+TGG | + | chr8_1:10854644-10854663 | None:intergenic | 40.0% |
| CAAAAGGGATTGTACTTGAC+AGG | - | chr8_1:10854642-10854661 | Msa1178190:intron | 40.0% | |
| TGTCAGAGACAGAAGTCATA+AGG | - | chr8_1:10854669-10854688 | Msa1178190:intron | 40.0% | |
| ! | GAGGATTAGATGTGTCATTG+AGG | + | chr8_1:10854731-10854750 | None:intergenic | 40.0% |
| TATCAGCTGAACACTTCTCT+TGG | - | chr8_1:10854819-10854838 | Msa1178190:intron | 40.0% | |
| !! | AGGATTTGTTGAATGGAGTG+TGG | - | chr8_1:10854950-10854969 | Msa1178190:CDS | 40.0% |
| TCATACTGTCCACAACATGT+CGG | + | chr8_1:10855110-10855129 | None:intergenic | 40.0% | |
| GAGTTCACAATTCTAACCAC+AGG | - | chr8_1:10855131-10855150 | Msa1178190:intron | 40.0% | |
| ! | ATGTTTGGAGCTCATCCTAA+TGG | + | chr8_1:10855214-10855233 | None:intergenic | 40.0% |
| !! | CAGTGGTTGTTTTCCTTTCT+TGG | - | chr8_1:10855289-10855308 | Msa1178190:intron | 40.0% |
| ! | TGTTTTCCTTTCTTGGCAGT+TGG | - | chr8_1:10855296-10855315 | Msa1178190:intron | 40.0% |
| CTTAAAGGATACTTGCACAC+TGG | - | chr8_1:10855342-10855361 | Msa1178190:intron | 40.0% | |
| AGAATAAACTTCGAGACCCA+AGG | - | chr8_1:10855368-10855387 | Msa1178190:intron | 40.0% | |
| ! | TAGTTCAGTAAGGCGTCATA+TGG | + | chr8_1:10855501-10855520 | None:intergenic | 40.0% |
| GAAGAGTCAATTAATTGCGG+AGG | - | chr8_1:10855628-10855647 | Msa1178190:intron | 40.0% | |
| TGAAAGGTTTACACAGCTGT+AGG | - | chr8_1:10856185-10856204 | Msa1178190:intron | 40.0% | |
| ! | CCAAACCCAATCATTTTGTG+GGG | - | chr8_1:10856325-10856344 | Msa1178190:intron | 40.0% |
| AATCTTCCTAACCTGCAATC+AGG | + | chr8_1:10856838-10856857 | None:intergenic | 40.0% | |
| GAAGATTTCCACCCATTGTT+AGG | - | chr8_1:10856851-10856870 | Msa1178190:intron | 40.0% | |
| TTCCTTCTCAATCCAAAGGA+TGG | + | chr8_1:10856944-10856963 | None:intergenic | 40.0% | |
| ! | GTATGCCATGTCTACTGTTT+TGG | + | chr8_1:10857024-10857043 | None:intergenic | 40.0% |
| ! | ATCGGTGTTCACTAAAGGTT+GGG | + | chr8_1:10857329-10857348 | None:intergenic | 40.0% |
| !! | AAGGGTTAGTCATCACTCAT+CGG | + | chr8_1:10857347-10857366 | None:intergenic | 40.0% |
| GTAAACTTGAGCACAAACTG+TGG | + | chr8_1:10857625-10857644 | None:intergenic | 40.0% | |
| ! | GAACATCAACCACGATTTTC+AGG | + | chr8_1:10857649-10857668 | None:intergenic | 40.0% |
| ! | GCTGATTCATCGATACAACA+GGG | + | chr8_1:10857719-10857738 | None:intergenic | 40.0% |
| GCTAGAGAAAGATCGGAATA+TGG | - | chr8_1:10857957-10857976 | Msa1178190:CDS | 40.0% | |
| AGATCGGAATATGGAGATTC+CGG | - | chr8_1:10857966-10857985 | Msa1178190:CDS | 40.0% | |
| ATTGTCTGGGTTGTACTCGT+TGG | - | chr8_1:10853390-10853409 | Msa1178190:three_prime_UTR | 45.0% | |
| TTGTCTGGGTTGTACTCGTT+GGG | - | chr8_1:10853391-10853410 | Msa1178190:three_prime_UTR | 45.0% | |
| CAGGCTACGAGAGTGAAAAT+TGG | - | chr8_1:10853438-10853457 | Msa1178190:three_prime_UTR | 45.0% | |
| GGCTACGAGAGTGAAAATTG+GGG | - | chr8_1:10853440-10853459 | Msa1178190:three_prime_UTR | 45.0% | |
| CAAACTCTTCTGCAGTAGCT+AGG | + | chr8_1:10853466-10853485 | None:intergenic | 45.0% | |
| GTGCGACAAATTCGTGGTAT+AGG | + | chr8_1:10853491-10853510 | None:intergenic | 45.0% | |
| TTCCGCAAGACAATCCAATC+AGG | + | chr8_1:10853584-10853603 | None:intergenic | 45.0% | |
| TGATTGGATTGTCTTGCGGA+AGG | - | chr8_1:10853583-10853602 | Msa1178190:three_prime_UTR | 45.0% | |
| TTGTCTTGCGGAAGGATTAC+GGG | - | chr8_1:10853591-10853610 | Msa1178190:three_prime_UTR | 45.0% | |
| GGACAAACGGAATTTCATGG+TGG | - | chr8_1:10853743-10853762 | Msa1178190:CDS | 45.0% | |
| ! | GTTATTGAAGGCAGCGGATT+GGG | - | chr8_1:10853781-10853800 | Msa1178190:CDS | 45.0% |
| !!! | AGCGGATTGGGTTTTTGATG+CGG | - | chr8_1:10853793-10853812 | Msa1178190:CDS | 45.0% |
| ATTGGGGATACAGAGAGACA+AGG | - | chr8_1:10853940-10853959 | Msa1178190:intron | 45.0% | |
| ! | GGTCCCTCTCTTTTATGGTT+AGG | + | chr8_1:10854158-10854177 | None:intergenic | 45.0% |
| ! | CATGAGGTCCCTCTCTTTTA+TGG | + | chr8_1:10854163-10854182 | None:intergenic | 45.0% |
| !!! | GCGTCTACAAGTCACTTTTG+TGG | - | chr8_1:10854290-10854309 | Msa1178190:intron | 45.0% |
| ATGTTGCCTCTCTACTCAGA+TGG | + | chr8_1:10854394-10854413 | None:intergenic | 45.0% | |
| CGCGTTATCAAATTGTCGCA+TGG | - | chr8_1:10854477-10854496 | Msa1178190:intron | 45.0% | |
| TACCAGCCACCATAGGTATT+AGG | - | chr8_1:10854540-10854559 | Msa1178190:intron | 45.0% | |
| TTGCAGCCTAATACCTATGG+TGG | + | chr8_1:10854549-10854568 | None:intergenic | 45.0% | |
| GTGTTGCAGCCTAATACCTA+TGG | + | chr8_1:10854552-10854571 | None:intergenic | 45.0% | |
| CTTAACCTGGTAACCTCAAG+GGG | + | chr8_1:10855073-10855092 | None:intergenic | 45.0% | |
| GCTTAACCTGGTAACCTCAA+GGG | + | chr8_1:10855074-10855093 | None:intergenic | 45.0% | |
| AGCTTAACCTGGTAACCTCA+AGG | + | chr8_1:10855075-10855094 | None:intergenic | 45.0% | |
| ATCACTTAGCCGACATGTTG+TGG | - | chr8_1:10855098-10855117 | Msa1178190:intron | 45.0% | |
| ! | TCCAGCTTTATGAGCTACAG+TGG | - | chr8_1:10855272-10855291 | Msa1178190:intron | 45.0% |
| ACCACTGTAGCTCATAAAGC+TGG | + | chr8_1:10855276-10855295 | None:intergenic | 45.0% | |
| ACAATGTGATAGAGACGACC+AGG | + | chr8_1:10855406-10855425 | None:intergenic | 45.0% | |
| AAAGCCCTTCAGGTACAGTA+TGG | - | chr8_1:10855432-10855451 | Msa1178190:intron | 45.0% | |
| AGCACCATACTGTACCTGAA+GGG | + | chr8_1:10855439-10855458 | None:intergenic | 45.0% | |
| CGATCTTCTGATAGTCCTTG+TGG | - | chr8_1:10855528-10855547 | Msa1178190:intron | 45.0% | |
| TCGTGTAAATTCTGCTCAGG+AGG | - | chr8_1:10856127-10856146 | Msa1178190:intron | 45.0% | |
| CCCCACAAAATGATTGGGTT+TGG | + | chr8_1:10856328-10856347 | None:intergenic | 45.0% | |
| CAGGTCCCCACAAAATGATT+GGG | + | chr8_1:10856333-10856352 | None:intergenic | 45.0% | |
| AACTGGCACTTTGTTGAAGC+AGG | + | chr8_1:10856352-10856371 | None:intergenic | 45.0% | |
| ! | TACATGTGTCGGTGTCTTGT+TGG | - | chr8_1:10856446-10856465 | Msa1178190:CDS | 45.0% |
| ACAACTGTACGTGTCAGACA+CGG | - | chr8_1:10856469-10856488 | Msa1178190:CDS | 45.0% | |
| ! | TAGTTTGGCTTCCTGATTGC+AGG | - | chr8_1:10856824-10856843 | Msa1178190:intron | 45.0% |
| GGTACTGCTGTCCTAACAAT+GGG | + | chr8_1:10856865-10856884 | None:intergenic | 45.0% | |
| ! | AGGTACTGCTGTCCTAACAA+TGG | + | chr8_1:10856866-10856885 | None:intergenic | 45.0% |
| TGATCAAACCTTCCATCGAC+AGG | + | chr8_1:10856886-10856905 | None:intergenic | 45.0% | |
| TCTCAATCCAAAGGATGGCA+TGG | + | chr8_1:10856939-10856958 | None:intergenic | 45.0% | |
| TGCCATCCTTTGGATTGAGA+AGG | - | chr8_1:10856939-10856958 | Msa1178190:intron | 45.0% | |
| GGGATTCCTTCTCAATCCAA+AGG | + | chr8_1:10856948-10856967 | None:intergenic | 45.0% | |
| GGATTGAGAAGGAATCCCAA+CGG | - | chr8_1:10856950-10856969 | Msa1178190:intron | 45.0% | |
| GATTGAGAAGGAATCCCAAC+GGG | - | chr8_1:10856951-10856970 | Msa1178190:intron | 45.0% | |
| ! | TCGGTGTTCACTAAAGGTTG+GGG | + | chr8_1:10857328-10857347 | None:intergenic | 45.0% |
| ! | CATCGGTGTTCACTAAAGGT+TGG | + | chr8_1:10857330-10857349 | None:intergenic | 45.0% |
| ! | CACTCATCGGTGTTCACTAA+AGG | + | chr8_1:10857334-10857353 | None:intergenic | 45.0% |
| ! | GGCTGATTCATCGATACAAC+AGG | + | chr8_1:10857720-10857739 | None:intergenic | 45.0% |
| GCATACTCACCTTCCTCATA+TGG | - | chr8_1:10858087-10858106 | Msa1178190:CDS | 45.0% | |
| ATTGATGCTGAGGAAGACTC+TGG | - | chr8_1:10858123-10858142 | Msa1178190:CDS | 45.0% | |
| ! | GAAGACTCTGGAAGATCTAG+TGG | - | chr8_1:10858135-10858154 | Msa1178190:CDS | 45.0% |
| !!! | TATTTTTTTATAATAAGTTT+TGG | - | chr8_1:10856229-10856248 | Msa1178190:intron | 5.0% |
| !! | TTTAATTATTATTTGATATA+CGG | - | chr8_1:10857898-10857917 | Msa1178190:CDS | 5.0% |
| TGTCTTGCGGAAGGATTACG+GGG | - | chr8_1:10853592-10853611 | Msa1178190:exon | 50.0% | |
| AAGGATTACGGGGATAACCG+AGG | - | chr8_1:10853602-10853621 | Msa1178190:exon | 50.0% | |
| GGTTATTGAAGGCAGCGGAT+TGG | - | chr8_1:10853780-10853799 | Msa1178190:CDS | 50.0% | |
| ! | GGTTTTTGATGCGGAATGGG+AGG | - | chr8_1:10853802-10853821 | Msa1178190:CDS | 50.0% |
| !! | ATGGGACATTCACTTGGTGC+TGG | - | chr8_1:10853872-10853891 | Msa1178190:CDS | 50.0% |
| !! | TGGGACATTCACTTGGTGCT+GGG | - | chr8_1:10853873-10853892 | Msa1178190:CDS | 50.0% |
| TTGAGAGACATACATCGGGC+AGG | + | chr8_1:10853986-10854005 | None:intergenic | 50.0% | |
| ACCAAGCCATCTGAGTAGAG+AGG | - | chr8_1:10854385-10854404 | Msa1178190:intron | 50.0% | |
| CAAGTGTGCGTGCATTGTCA+TGG | - | chr8_1:10854426-10854445 | Msa1178190:intron | 50.0% | |
| ACAGAATCCGCCATGCCATA+AGG | + | chr8_1:10854521-10854540 | None:intergenic | 50.0% | |
| GATTCTGTACCAGCCACCAT+AGG | - | chr8_1:10854533-10854552 | Msa1178190:intron | 50.0% | |
| AGCCTAATACCTATGGTGGC+TGG | + | chr8_1:10854545-10854564 | None:intergenic | 50.0% | |
| ! | CAGGTTTTCGGTATTCACCG+AGG | + | chr8_1:10854913-10854932 | None:intergenic | 50.0% |
| ATTTGAGCTCTGTCCCCTTG+AGG | - | chr8_1:10855057-10855076 | Msa1178190:intron | 50.0% | |
| ACAAGGCCAACTGCCAAGAA+AGG | + | chr8_1:10855305-10855324 | None:intergenic | 50.0% | |
| GAGCACCATACTGTACCTGA+AGG | + | chr8_1:10855440-10855459 | None:intergenic | 50.0% | |
| GCAGGTCCCCACAAAATGAT+TGG | + | chr8_1:10856334-10856353 | None:intergenic | 50.0% | |
| CAACTGTACGTGTCAGACAC+GGG | - | chr8_1:10856470-10856489 | Msa1178190:CDS | 50.0% | |
| CTCCCTGCGAGAAAAGACTT+CGG | - | chr8_1:10856653-10856672 | Msa1178190:intron | 50.0% | |
| ! | GACCGAAGTCTTTTCTCGCA+GGG | + | chr8_1:10856658-10856677 | None:intergenic | 50.0% |
| TGGCTTCCTGATTGCAGGTT+AGG | - | chr8_1:10856829-10856848 | Msa1178190:intron | 50.0% | |
| ACTGCTGTCCTAACAATGGG+TGG | + | chr8_1:10856862-10856881 | None:intergenic | 50.0% | |
| CTACTGACCATGCCATCCTT+TGG | - | chr8_1:10856929-10856948 | Msa1178190:intron | 50.0% | |
| GTTCACTAAAGGTTGGGGAC+AGG | + | chr8_1:10857323-10857342 | None:intergenic | 50.0% | |
| ! | CTAACCATCTTTTGCGCAGC+CGG | + | chr8_1:10857988-10858007 | None:intergenic | 50.0% |
| GAGGAAGGTGAGTATGCTTG+AGG | + | chr8_1:10858084-10858103 | None:intergenic | 50.0% | |
| ATGTTTGACGTGGACGACAC+AGG | - | chr8_1:10858219-10858238 | Msa1178190:CDS | 50.0% | |
| TGGGTTGTACTCGTTGGGCT+TGG | - | chr8_1:10853396-10853415 | Msa1178190:three_prime_UTR | 55.0% | |
| ATGCGGAATGGGAGGTTCTG+AGG | - | chr8_1:10853810-10853829 | Msa1178190:CDS | 55.0% | |
| !! | GGGACATTCACTTGGTGCTG+GGG | - | chr8_1:10853874-10853893 | Msa1178190:CDS | 55.0% |
| !! | ACATTCACTTGGTGCTGGGG+TGG | - | chr8_1:10853877-10853896 | Msa1178190:CDS | 55.0% |
| CATACATCGGGCAGGAGCAA+TGG | + | chr8_1:10853978-10853997 | None:intergenic | 55.0% | |
| GTAGACGCTTTCCAGAGCAG+TGG | + | chr8_1:10854278-10854297 | None:intergenic | 55.0% | |
| GCCTCTCTACTCAGATGGCT+TGG | + | chr8_1:10854389-10854408 | None:intergenic | 55.0% | |
| AATTGTCGCATGGTGGCTCG+TGG | - | chr8_1:10854487-10854506 | Msa1178190:intron | 55.0% | |
| !! | TCCATGGCCTTATGGCATGG+CGG | - | chr8_1:10854511-10854530 | Msa1178190:intron | 55.0% |
| TCTGTCCCCTTGAGGTTACC+AGG | - | chr8_1:10855065-10855084 | Msa1178190:intron | 55.0% | |
| CAGGTGCATACAGACGCCTT+GGG | + | chr8_1:10855387-10855406 | None:intergenic | 55.0% | |
| TTGTCGAGCGAAAGCCCTTC+AGG | - | chr8_1:10855422-10855441 | Msa1178190:intron | 55.0% | |
| ! | CGAAGTCTTTTCTCGCAGGG+AGG | + | chr8_1:10856655-10856674 | None:intergenic | 55.0% |
| ! | CGACCGAAGTCTTTTCTCGC+AGG | + | chr8_1:10856659-10856678 | None:intergenic | 55.0% |
| CGAGAAAAGACTTCGGTCGC+TGG | - | chr8_1:10856660-10856679 | Msa1178190:intron | 55.0% | |
| AGGACAGCAGTACCTGTCGA+TGG | - | chr8_1:10856871-10856890 | Msa1178190:intron | 55.0% | |
| CAGCAGTACCTGTCGATGGA+AGG | - | chr8_1:10856875-10856894 | Msa1178190:intron | 55.0% | |
| GCTTACATCGAGAGCCCGTT+GGG | + | chr8_1:10856968-10856987 | None:intergenic | 55.0% | |
| AGCTTACATCGAGAGCCCGT+TGG | + | chr8_1:10856969-10856988 | None:intergenic | 55.0% | |
| GATTCCGGCTGCGCAAAAGA+TGG | - | chr8_1:10857981-10858000 | Msa1178190:CDS | 55.0% | |
| CGGCTGCGCAAAAGATGGTT+AGG | - | chr8_1:10857986-10858005 | Msa1178190:CDS | 55.0% | |
| !! | AAGAGTACCGTGCAGCCCTT+CGG | - | chr8_1:10858037-10858056 | Msa1178190:CDS | 55.0% |
| CAAAGCAACTGCCCTCCGAA+GGG | + | chr8_1:10858055-10858074 | None:intergenic | 55.0% | |
| TGTCGGACGCATGTTTGACG+TGG | - | chr8_1:10858209-10858228 | Msa1178190:CDS | 55.0% | |
| CGTGGACGACACAGGTCATA+TGG | - | chr8_1:10858227-10858246 | Msa1178190:CDS | 55.0% | |
| TGGGCTCCCGAAGGTGGTTA+TGG | - | chr8_1:10853551-10853570 | Msa1178190:three_prime_UTR | 60.0% | |
| !! | TTCACTTGGTGCTGGGGTGG+TGG | - | chr8_1:10853880-10853899 | Msa1178190:CDS | 60.0% |
| ACCTCGGACAACCACTGCTC+TGG | - | chr8_1:10854264-10854283 | Msa1178190:intron | 60.0% | |
| TCCAGAGCAGTGGTTGTCCG+AGG | + | chr8_1:10854268-10854287 | None:intergenic | 60.0% | |
| ! | CTCGTGGCTCCATGGCCTTA+TGG | - | chr8_1:10854503-10854522 | Msa1178190:intron | 60.0% |
| !! | GGCTCCATGGCCTTATGGCA+TGG | - | chr8_1:10854508-10854527 | Msa1178190:intron | 60.0% |
| TCCGCCATGCCATAAGGCCA+TGG | + | chr8_1:10854515-10854534 | None:intergenic | 60.0% | |
| CCAGGTGCATACAGACGCCT+TGG | + | chr8_1:10855388-10855407 | None:intergenic | 60.0% | |
| ! | CCAAGGCGTCTGTATGCACC+TGG | - | chr8_1:10855385-10855404 | Msa1178190:intron | 60.0% |
| CCAAAGCAACTGCCCTCCGA+AGG | + | chr8_1:10858056-10858075 | None:intergenic | 60.0% | |
| CCTTCGGAGGGCAGTTGCTT+TGG | - | chr8_1:10858053-10858072 | Msa1178190:intron | 60.0% | |
| ! | AACCCTCAGTGGGCTCCCGA+AGG | - | chr8_1:10853542-10853561 | Msa1178190:three_prime_UTR | 65.0% |
| CACCTTCGGGAGCCCACTGA+GGG | + | chr8_1:10853547-10853566 | None:intergenic | 65.0% | |
| CATGGTGGCTCGTGGCTCCA+TGG | - | chr8_1:10854495-10854514 | Msa1178190:intron | 65.0% | |
| AGTACCGTGCAGCCCTTCGG+AGG | - | chr8_1:10858040-10858059 | Msa1178190:CDS | 65.0% | |
| GTACCGTGCAGCCCTTCGGA+GGG | - | chr8_1:10858041-10858060 | Msa1178190:intron | 65.0% | |
| CCACCTTCGGGAGCCCACTG+AGG | + | chr8_1:10853548-10853567 | None:intergenic | 70.0% | |
| ! | CCTCAGTGGGCTCCCGAAGG+TGG | - | chr8_1:10853545-10853564 | Msa1178190:three_prime_UTR | 70.0% |
| CTGCCCTCCGAAGGGCTGCA+CGG | + | chr8_1:10858047-10858066 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 10853350 | 10858533 | 10853350 | ID=Msa1178190;Name=Msa1178190 |
| chr8_1 | mRNA | 10853350 | 10858533 | 10853350 | ID=Msa1178190-mRNA-1;Parent=Msa1178190;Name=Msa1178190-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.5|0.42|1|0.5|0.42|7|261|429 |
| chr8_1 | exon | 10853350 | 10853931 | 10853350 | ID=Msa1178190-mRNA-1:exon:3819;Parent=Msa1178190-mRNA-1 |
| chr8_1 | exon | 10854902 | 10855037 | 10854902 | ID=Msa1178190-mRNA-1:exon:3818;Parent=Msa1178190-mRNA-1 |
| chr8_1 | exon | 10856440 | 10856568 | 10856440 | ID=Msa1178190-mRNA-1:exon:3817;Parent=Msa1178190-mRNA-1 |
| chr8_1 | exon | 10857584 | 10857630 | 10857584 | ID=Msa1178190-mRNA-1:exon:3816;Parent=Msa1178190-mRNA-1 |
| chr8_1 | exon | 10857832 | 10858059 | 10857832 | ID=Msa1178190-mRNA-1:exon:3815;Parent=Msa1178190-mRNA-1 |
| chr8_1 | exon | 10858081 | 10858319 | 10858081 | ID=Msa1178190-mRNA-1:exon:3814;Parent=Msa1178190-mRNA-1 |
| chr8_1 | exon | 10858344 | 10858533 | 10858344 | ID=Msa1178190-mRNA-1:exon:3813;Parent=Msa1178190-mRNA-1 |
| chr8_1 | CDS | 10858344 | 10858533 | 10858344 | ID=Msa1178190-mRNA-1:cds;Parent=Msa1178190-mRNA-1 |
| chr8_1 | CDS | 10858081 | 10858319 | 10858081 | ID=Msa1178190-mRNA-1:cds;Parent=Msa1178190-mRNA-1 |
| chr8_1 | CDS | 10857832 | 10858059 | 10857832 | ID=Msa1178190-mRNA-1:cds;Parent=Msa1178190-mRNA-1 |
| chr8_1 | CDS | 10857584 | 10857630 | 10857584 | ID=Msa1178190-mRNA-1:cds;Parent=Msa1178190-mRNA-1 |
| chr8_1 | CDS | 10856440 | 10856568 | 10856440 | ID=Msa1178190-mRNA-1:cds;Parent=Msa1178190-mRNA-1 |
| chr8_1 | CDS | 10854902 | 10855037 | 10854902 | ID=Msa1178190-mRNA-1:cds;Parent=Msa1178190-mRNA-1 |
| chr8_1 | CDS | 10853611 | 10853931 | 10853611 | ID=Msa1178190-mRNA-1:cds;Parent=Msa1178190-mRNA-1 |
| chr8_1 | three_prime_UTR | 10853350 | 10853610 | 10853350 | ID=Msa1178190-mRNA-1:three_prime_utr;Parent=Msa1178190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
