AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039710 MtrunA17_Chr7g0272081 95.200 125 6 0 1 125 1 125 5.87e-84 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039710 AT1G56260.2 49.138 116 58 1 1 115 1 116 7.93e-38 124
Msa1039710 AT1G56260.1 49.138 116 58 1 1 115 1 116 7.93e-38 124

Find 49 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATGTTTATATGCTTCT+AGG 0.224256 7_1:+76967314 Msa1039710:three_prime_UTR
GGAACATCAGTCAGAATAAT+TGG 0.230539 7_1:+76964393 Msa1039710:CDS
AAGCCCTCTGTCCATTCTTC+AGG 0.290788 7_1:+76963366 Msa1039710:five_prime_UTR
AGCCAACCATTTGAATAATT+CGG 0.300995 7_1:+76967183 Msa1039710:CDS
ATTCATTACATTGCACAATC+AGG 0.318021 7_1:-76967561 None:intergenic
ATTCGGCAACTTAACTTTGT+AGG 0.318906 7_1:+76967200 Msa1039710:exon
TTTACAAGTTACAACCTTCA+TGG 0.334882 7_1:+76967386 Msa1039710:three_prime_UTR
GAGGCTCTGCGACAAACTTA+AGG 0.393479 7_1:+76967534 Msa1039710:three_prime_UTR
ATACTTCTATGAAAATAGTA+AGG 0.422076 7_1:-76967264 None:intergenic
GGATCTGTCTACCAATTCAT+TGG 0.425515 7_1:+76966864 Msa1039710:CDS
GACATTTAGTTGTAAATTTG+AGG 0.431238 7_1:+76967515 Msa1039710:three_prime_UTR
TAAGAAGCTCGCCAATGAAT+TGG 0.437510 7_1:-76966875 None:intergenic
CAGATCCAACTTGAAACTTA+AGG 0.441876 7_1:-76966848 None:intergenic
TTGCTTCGAATGATGCCATC+AGG 0.454505 7_1:-76964311 None:intergenic
TGCCGAATTATTCAAATGGT+TGG 0.458705 7_1:-76967185 None:intergenic
TCCGTGAATCAAAGTTAAAA+CGG 0.459387 7_1:+76963264 None:intergenic
AAAGAAGAAAACCTGAAGAA+TGG 0.480856 7_1:-76963377 None:intergenic
CACGAATACTCTTTAGAGAC+AGG 0.496480 7_1:+76966765 Msa1039710:CDS
AAGGACCTTAAGTTTCAAGT+TGG 0.504185 7_1:+76966843 Msa1039710:CDS
GCATCATTCGAAGCAAAATC+CGG 0.514495 7_1:+76964318 Msa1039710:CDS
TTCATTACATTGCACAATCA+GGG 0.516627 7_1:-76967560 None:intergenic
CACGTACCTCATCATCAGTT+CGG 0.519854 7_1:-76966899 None:intergenic
ACCGCGAGGGTAGACGGCGG+TGG 0.528791 7_1:-76963318 None:intergenic
AAGTTGCCGAATTATTCAAA+TGG 0.529169 7_1:-76967189 None:intergenic
GCGAGGGTAGACGGCGGTGG+AGG 0.546576 7_1:-76963315 None:intergenic
AAAATGAAATGTCACCATGA+AGG 0.555013 7_1:-76967400 None:intergenic
ACGACCACCGCGAGGGTAGA+CGG 0.565243 7_1:-76963324 None:intergenic
TTTATATGCTTCTAGGACAA+GGG 0.567964 7_1:+76967321 Msa1039710:three_prime_UTR
TAGTAGCAAGTGAAGCCTGA+TGG 0.580797 7_1:+76964296 Msa1039710:exon
GTTTATATGCTTCTAGGACA+AGG 0.581797 7_1:+76967320 Msa1039710:three_prime_UTR
TTGTAAAGAAACTAACGCAC+CGG 0.593486 7_1:-76964337 None:intergenic
AGTTAGTACTGAGCATCTGA+AGG 0.602957 7_1:+76966824 Msa1039710:CDS
TACCATCGATGACTGTTGCA+AGG 0.616671 7_1:-76966788 None:intergenic
GGCCTTGCAACAGTCATCGA+TGG 0.618120 7_1:+76966786 Msa1039710:CDS
TACTTCTATGAAAATAGTAA+GGG 0.622395 7_1:-76967263 None:intergenic
AAACCTGAAGAATGGACAGA+GGG 0.630357 7_1:-76963369 None:intergenic
AAACTGTTTCAAAAGCAGCA+AGG 0.639053 7_1:-76967158 None:intergenic
TCTTATCCGAACTGATGATG+AGG 0.648922 7_1:+76966893 Msa1039710:CDS
AATGTACACGACCACCGCGA+GGG 0.651221 7_1:-76963331 None:intergenic
AAAACCTGAAGAATGGACAG+AGG 0.659411 7_1:-76963370 None:intergenic
CGTGTTGGTAGAAATGTCGA+CGG 0.665620 7_1:+76967109 Msa1039710:CDS
GTGTTGGTAGAAATGTCGAC+GGG 0.670397 7_1:+76967110 Msa1039710:CDS
TCCACCGCCGTCTACCCTCG+CGG 0.675678 7_1:+76963317 Msa1039710:five_prime_UTR
GACATGATGACATCAAAGAG+TGG 0.680973 7_1:+76967452 Msa1039710:three_prime_UTR
TATGCTGTGCATGCTTCACG+AGG 0.681792 7_1:+76967493 Msa1039710:three_prime_UTR
CGGCGGTGGAGGCAGAACAG+AGG 0.686718 7_1:-76963304 None:intergenic
ACCGCCGTCTACCCTCGCGG+TGG 0.702706 7_1:+76963320 Msa1039710:five_prime_UTR
CAATGTACACGACCACCGCG+AGG 0.707239 7_1:-76963332 None:intergenic
ACCACCGCGAGGGTAGACGG+CGG 0.802445 7_1:-76963321 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATCAAAATTAGAAT+GGG - chr7_1:76964431-76964450 None:intergenic 10.0%
!! TCATAATATAAAAACATAAA+AGG + chr7_1:76967235-76967254 Msa1039710:three_prime_UTR 10.0%
!!! TTGTTATTTATTGTTAAAGA+AGG + chr7_1:76963709-76963728 Msa1039710:intron 15.0%
!!! TGTTATTTATTGTTAAAGAA+GGG + chr7_1:76963710-76963729 Msa1039710:intron 15.0%
!! CAAATATATCAAAATTAGAA+TGG - chr7_1:76964432-76964451 None:intergenic 15.0%
!! AGAATTTATGAAAATAGATT+AGG + chr7_1:76964760-76964779 Msa1039710:intron 15.0%
!!! TATAACTTTAAAAAATCACT+TGG - chr7_1:76966057-76966076 None:intergenic 15.0%
!! AGTTATATATATAAGAGAAA+TGG + chr7_1:76966070-76966089 Msa1039710:intron 15.0%
!! AATGATTAATGAATATATCA+AGG + chr7_1:76966180-76966199 Msa1039710:intron 15.0%
!! AAATAGATAATTAGATATAG+AGG - chr7_1:76966610-76966629 None:intergenic 15.0%
!! AAAAAGTAGAGAAATTGAAA+CGG - chr7_1:76963440-76963459 None:intergenic 20.0%
!! ATAATCAAAGTGAAAAAACA+GGG - chr7_1:76963481-76963500 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAA+AGG - chr7_1:76963604-76963623 None:intergenic 20.0%
!! GTTATTTATTGTTAAAGAAG+GGG + chr7_1:76963711-76963730 Msa1039710:intron 20.0%
!!! TTTTTATAAGCTATTCTTGA+GGG + chr7_1:76963873-76963892 Msa1039710:intron 20.0%
!! TTTATATAAGCTCTTTCAAA+CGG + chr7_1:76963942-76963961 Msa1039710:intron 20.0%
!! ATTGATATCTTTAGTAACTT+TGG - chr7_1:76965149-76965168 None:intergenic 20.0%
!!! TCTAGTCTGTTTTAATTATA+AGG + chr7_1:76965269-76965288 Msa1039710:intron 20.0%
!! TTATAGTAATAAGAACTAGA+AGG - chr7_1:76965627-76965646 None:intergenic 20.0%
!!! AGTTTTATCAAATTCAGTTT+GGG - chr7_1:76965842-76965861 None:intergenic 20.0%
!!! TAGTTTTATCAAATTCAGTT+TGG - chr7_1:76965843-76965862 None:intergenic 20.0%
!! AAACTGAATTTGATAAAACT+AGG + chr7_1:76965842-76965861 Msa1039710:intron 20.0%
!! TTCAATATTGTGATTAATTG+TGG - chr7_1:76966233-76966252 None:intergenic 20.0%
!!! GTATATTTTAACACAAATTC+TGG + chr7_1:76966277-76966296 Msa1039710:intron 20.0%
!! ATATTTGAACACAATTTCAA+TGG + chr7_1:76966351-76966370 Msa1039710:intron 20.0%
!!! TCGAAATTTGTGTTAAATTT+TGG + chr7_1:76966570-76966589 Msa1039710:intron 20.0%
!!! CGAAATTTGTGTTAAATTTT+GGG + chr7_1:76966571-76966590 Msa1039710:intron 20.0%
!!! AATGTTCTTTGTTTTTTGTT+AGG + chr7_1:76967072-76967091 Msa1039710:intron 20.0%
!!! ATGTTCTTTGTTTTTTGTTA+GGG + chr7_1:76967073-76967092 Msa1039710:intron 20.0%
!! TACTTCTATGAAAATAGTAA+GGG - chr7_1:76967266-76967285 None:intergenic 20.0%
!! ATACTTCTATGAAAATAGTA+AGG - chr7_1:76967267-76967286 None:intergenic 20.0%
!!! TTTTATTATACGCTTTCTTT+TGG + chr7_1:76967419-76967438 Msa1039710:three_prime_UTR 20.0%
! GATAATCAAAGTGAAAAAAC+AGG - chr7_1:76963482-76963501 None:intergenic 25.0%
!! GTAGTGATTTATCTTACTTT+TGG + chr7_1:76963504-76963523 Msa1039710:intron 25.0%
! ACATCAATATTGTAGTGATA+AGG - chr7_1:76963751-76963770 None:intergenic 25.0%
! GTATAAGAATGTGAATCATA+AGG - chr7_1:76963789-76963808 None:intergenic 25.0%
!! GTTTTTATAAGCTATTCTTG+AGG + chr7_1:76963872-76963891 Msa1039710:intron 25.0%
!! TAATTAGGGTTTGTTTGAAT+TGG - chr7_1:76964008-76964027 None:intergenic 25.0%
!! TTAAAATCTTTTATGTGACG+AGG + chr7_1:76964090-76964109 Msa1039710:intron 25.0%
! AATGTGTAAATTCATGCTAA+TGG - chr7_1:76964158-76964177 None:intergenic 25.0%
!! GTTATATTTTTCCAAATTGC+AGG + chr7_1:76964256-76964275 Msa1039710:intron 25.0%
!!! TTGTGACTTTTTCTTTTGTT+TGG + chr7_1:76964449-76964468 Msa1039710:intron 25.0%
! CAGAACATAATTTCACATAA+GGG - chr7_1:76964483-76964502 None:intergenic 25.0%
!!! TTTTAATGCTTGAGGTATTT+AGG + chr7_1:76964543-76964562 Msa1039710:intron 25.0%
! AATAAACTGTTTATCCAAAC+AGG - chr7_1:76964604-76964623 None:intergenic 25.0%
!!! ACTGATTATCAAGCTTTTTT+CGG - chr7_1:76964786-76964805 None:intergenic 25.0%
! TAGATAAACTCAAATAAGCT+TGG + chr7_1:76964848-76964867 Msa1039710:intron 25.0%
! AGATAAACTCAAATAAGCTT+GGG + chr7_1:76964849-76964868 Msa1039710:intron 25.0%
! GGGAACAAATATGATATTTA+CGG + chr7_1:76964985-76965004 Msa1039710:intron 25.0%
!!! AATTTTGACAAATGCTAAAC+AGG + chr7_1:76965046-76965065 Msa1039710:intron 25.0%
!! GGTAGAGAACAAATATTTTT+GGG - chr7_1:76965186-76965205 None:intergenic 25.0%
! CAAAAATATTTGTTCTCTAC+CGG + chr7_1:76965185-76965204 Msa1039710:intron 25.0%
!! TTCTTGCTAATTCATTTTGA+TGG + chr7_1:76965222-76965241 Msa1039710:intron 25.0%
! ACAGACTAGATGAAAATAAA+AGG - chr7_1:76965259-76965278 None:intergenic 25.0%
!!! AATAACTGGAATGCTTTTTA+TGG - chr7_1:76965322-76965341 None:intergenic 25.0%
!!! CATAGTACTGAAAATAGTTT+TGG + chr7_1:76965567-76965586 Msa1039710:intron 25.0%
!! AATCCATTTAAAATCTACAG+GGG - chr7_1:76965655-76965674 None:intergenic 25.0%
!! GAATCCATTTAAAATCTACA+GGG - chr7_1:76965656-76965675 None:intergenic 25.0%
!! TGAATCCATTTAAAATCTAC+AGG - chr7_1:76965657-76965676 None:intergenic 25.0%
! AATATCTTCAACTGAAACAA+TGG + chr7_1:76965812-76965831 Msa1039710:intron 25.0%
! ATATCTTCAACTGAAACAAT+GGG + chr7_1:76965813-76965832 Msa1039710:intron 25.0%
!! CTTTAAAAAATCACTTGGAT+TGG - chr7_1:76966052-76966071 None:intergenic 25.0%
! AAATATACACCTAAAAAACG+TGG - chr7_1:76966265-76966284 None:intergenic 25.0%
!! ATTATGATTGTGAAGTATCT+TGG + chr7_1:76966712-76966731 Msa1039710:intron 25.0%
! GACATTTAGTTGTAAATTTG+AGG + chr7_1:76967515-76967534 Msa1039710:three_prime_UTR 25.0%
AAAGAAGAAAACCTGAAGAA+TGG - chr7_1:76963380-76963399 None:intergenic 30.0%
TAAGAATGTGAATCATAAGG+TGG - chr7_1:76963786-76963805 None:intergenic 30.0%
! AAGTCAAACTGTTTTCATGT+AGG + chr7_1:76963840-76963859 Msa1039710:intron 30.0%
ACAAACCCTAATTAATTGAC+TGG + chr7_1:76964014-76964033 Msa1039710:intron 30.0%
CAAACCCTAATTAATTGACT+GGG + chr7_1:76964015-76964034 Msa1039710:intron 30.0%
ATCTCCCAGTCAATTAATTA+GGG - chr7_1:76964022-76964041 None:intergenic 30.0%
AATCTCCCAGTCAATTAATT+AGG - chr7_1:76964023-76964042 None:intergenic 30.0%
CAATTTCCTTCACAAATGAA+TGG - chr7_1:76964066-76964085 None:intergenic 30.0%
! TGTTATGCTACTCAAACTTT+TGG - chr7_1:76964130-76964149 None:intergenic 30.0%
GCAGAACATAATTTCACATA+AGG - chr7_1:76964484-76964503 None:intergenic 30.0%
TGAAATTATGTTCTGCCTTT+GGG + chr7_1:76964488-76964507 Msa1039710:intron 30.0%
! AGTGTGATTTTTAATGCTTG+AGG + chr7_1:76964535-76964554 Msa1039710:intron 30.0%
TTATGCATAAGTGCTTATCA+TGG - chr7_1:76964651-76964670 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr7_1:76964823-76964842 None:intergenic 30.0%
! TTCTAGTAACAAAGGTTTTG+TGG + chr7_1:76964883-76964902 Msa1039710:intron 30.0%
AGACACAAAATAACTACTAC+TGG - chr7_1:76964912-76964931 None:intergenic 30.0%
!! AGTAGTTATTTTGTGTCTGT+TGG + chr7_1:76964914-76964933 Msa1039710:intron 30.0%
!! GTAGTTATTTTGTGTCTGTT+GGG + chr7_1:76964915-76964934 Msa1039710:intron 30.0%
!! TAGTTATTTTGTGTCTGTTG+GGG + chr7_1:76964916-76964935 Msa1039710:intron 30.0%
TGACAAAACCAAAAGCAAAA+TGG - chr7_1:76964945-76964964 None:intergenic 30.0%
!!! TTTTGCTTTTGGTTTTGTCA+TGG + chr7_1:76964945-76964964 Msa1039710:intron 30.0%
! CGGTAGAGAACAAATATTTT+TGG - chr7_1:76965187-76965206 None:intergenic 30.0%
AAGAAAACATTGCTATCTTC+CGG - chr7_1:76965207-76965226 None:intergenic 30.0%
!! AATTCATTTTGATGGAATGC+AGG + chr7_1:76965230-76965249 Msa1039710:intron 30.0%
! AAAGCATTCCAGTTATTATC+CGG + chr7_1:76965325-76965344 Msa1039710:intron 30.0%
TGATAGCTGAAAACTAATAC+AGG - chr7_1:76965388-76965407 None:intergenic 30.0%
ATAAGAACTAGAAGGAAGTT+TGG - chr7_1:76965619-76965638 None:intergenic 30.0%
! GACACTATATATTGCTGATT+TGG + chr7_1:76965751-76965770 Msa1039710:intron 30.0%
TATCTTCAACTGAAACAATG+GGG + chr7_1:76965814-76965833 Msa1039710:intron 30.0%
CTGAATTTGATAAAACTAGG+AGG + chr7_1:76965845-76965864 Msa1039710:intron 30.0%
ACATCTACTGGTAATTGAAA+CGG + chr7_1:76965891-76965910 Msa1039710:intron 30.0%
ATCTAAATTGTTGTCGAATC+TGG - chr7_1:76966120-76966139 None:intergenic 30.0%
AGATTCGACAACAATTTAGA+TGG + chr7_1:76966119-76966138 Msa1039710:intron 30.0%
GTTAACGCAATTCAAATACA+TGG + chr7_1:76966141-76966160 Msa1039710:intron 30.0%
! GATTAATTGTGGTTTGTGAA+TGG - chr7_1:76966222-76966241 None:intergenic 30.0%
!!! TGTCATTAACCACGTTTTTT+AGG + chr7_1:76966253-76966272 Msa1039710:intron 30.0%
ATTTGAACACCTAAAAATCG+TGG + chr7_1:76966394-76966413 Msa1039710:intron 30.0%
! CATCATTAACCACGATTTTT+AGG - chr7_1:76966406-76966425 None:intergenic 30.0%
GTTAATGATGTTCAAAATCG+TGG + chr7_1:76966416-76966435 Msa1039710:intron 30.0%
TGTGTTTAGTGAATGGTTAA+TGG + chr7_1:76966462-76966481 Msa1039710:intron 30.0%
GTGTTTAGTGAATGGTTAAT+GGG + chr7_1:76966463-76966482 Msa1039710:intron 30.0%
GATGGTTAATGAAGATAACA+AGG - chr7_1:76966497-76966516 None:intergenic 30.0%
GTATGGTTAATTACGTTCAT+TGG - chr7_1:76966519-76966538 None:intergenic 30.0%
GTTAACACAGTTCAAATGTA+TGG - chr7_1:76966536-76966555 None:intergenic 30.0%
GTCTTCTAAATGCAATCATA+CGG - chr7_1:76966654-76966673 None:intergenic 30.0%
!! TGAGTTTGCTATAGAAAATC+GGG - chr7_1:76966956-76966975 None:intergenic 30.0%
!! GTGAGTTTGCTATAGAAAAT+CGG - chr7_1:76966957-76966976 None:intergenic 30.0%
! TTTTCTATAGCAAACTCACT+TGG + chr7_1:76966958-76966977 Msa1039710:intron 30.0%
AGCCAACCATTTGAATAATT+CGG + chr7_1:76967183-76967202 Msa1039710:CDS 30.0%
AAGTTGCCGAATTATTCAAA+TGG - chr7_1:76967192-76967211 None:intergenic 30.0%
AAGCATGTTTATATGCTTCT+AGG + chr7_1:76967314-76967333 Msa1039710:three_prime_UTR 30.0%
!! TTTATATGCTTCTAGGACAA+GGG + chr7_1:76967321-76967340 Msa1039710:three_prime_UTR 30.0%
TTTACAAGTTACAACCTTCA+TGG + chr7_1:76967386-76967405 Msa1039710:three_prime_UTR 30.0%
AAAATGAAATGTCACCATGA+AGG - chr7_1:76967403-76967422 None:intergenic 30.0%
TTCATTACATTGCACAATCA+GGG - chr7_1:76967563-76967582 None:intergenic 30.0%
ATTCATTACATTGCACAATC+AGG - chr7_1:76967564-76967583 None:intergenic 30.0%
! CATGAAGAATACAGCCTTTT+TGG + chr7_1:76963587-76963606 Msa1039710:intron 35.0%
TGAATCATAAGGTGGTTTGA+GGG - chr7_1:76963778-76963797 None:intergenic 35.0%
! ACTGTTTTCATGTAGGCTAT+AGG + chr7_1:76963847-76963866 Msa1039710:intron 35.0%
CAATCACCATTCATTTGTGA+AGG + chr7_1:76964057-76964076 Msa1039710:intron 35.0%
! TTTTATGTGACGAGGTCATA+TGG + chr7_1:76964098-76964117 Msa1039710:intron 35.0%
TTCAATTACAGCCTGCAATT+TGG - chr7_1:76964270-76964289 None:intergenic 35.0%
TTGTAAAGAAACTAACGCAC+CGG - chr7_1:76964340-76964359 None:intergenic 35.0%
GATGTTCCTTGCTTGAAAAA+AGG - chr7_1:76964381-76964400 None:intergenic 35.0%
GGAACATCAGTCAGAATAAT+TGG + chr7_1:76964393-76964412 Msa1039710:CDS 35.0%
GTGAAATTATGTTCTGCCTT+TGG + chr7_1:76964487-76964506 Msa1039710:intron 35.0%
ATTTAGGTAATCCCATCTTC+AGG + chr7_1:76964559-76964578 Msa1039710:intron 35.0%
!! TCAGGTCTTGTTATGCATTT+AGG + chr7_1:76964577-76964596 Msa1039710:intron 35.0%
!! CAGGTCTTGTTATGCATTTA+GGG + chr7_1:76964578-76964597 Msa1039710:intron 35.0%
!! GCTGTTTTCATGAGCTATAT+TGG + chr7_1:76964737-76964756 Msa1039710:intron 35.0%
CAGTGAACTTCTAGTAACAA+AGG + chr7_1:76964875-76964894 Msa1039710:intron 35.0%
! TTTTGTCATGGATTTGTAGC+AGG + chr7_1:76964957-76964976 Msa1039710:intron 35.0%
AATAAACCCCTCAATCTTAG+AGG + chr7_1:76965121-76965140 Msa1039710:intron 35.0%
!! TTTGGAACCTCTAAGATTGA+GGG - chr7_1:76965131-76965150 None:intergenic 35.0%
TCATGTGATCTTTCCATTCA+TGG + chr7_1:76965499-76965518 Msa1039710:intron 35.0%
! TTGCCCCTGTAGATTTTAAA+TGG + chr7_1:76965649-76965668 Msa1039710:intron 35.0%
ATCTTCAACTGAAACAATGG+GGG + chr7_1:76965815-76965834 Msa1039710:intron 35.0%
TTGATAAAACTAGGAGGTTG+AGG + chr7_1:76965851-76965870 Msa1039710:intron 35.0%
TAACCATAGAAGACATCTAC+TGG + chr7_1:76965879-76965898 Msa1039710:intron 35.0%
TTACCAGTAGATGTCTTCTA+TGG - chr7_1:76965885-76965904 None:intergenic 35.0%
CAAACTAACCTACCGAAATT+GGG + chr7_1:76965958-76965977 Msa1039710:intron 35.0%
AAGCAACTGTGTTTAGTGAA+TGG + chr7_1:76966455-76966474 Msa1039710:intron 35.0%
GGTTAATTACGTTCATTGGA+TGG - chr7_1:76966515-76966534 None:intergenic 35.0%
TTCTAAATGCAATCATACGG+TGG - chr7_1:76966651-76966670 None:intergenic 35.0%
! AAGGACCTTAAGTTTCAAGT+TGG + chr7_1:76966843-76966862 Msa1039710:CDS 35.0%
CAGATCCAACTTGAAACTTA+AGG - chr7_1:76966851-76966870 None:intergenic 35.0%
! TTTGCTATAGAAAATCGGGT+AGG - chr7_1:76966952-76966971 None:intergenic 35.0%
! TTTTTGTTAGGGAGTTTTGC+AGG + chr7_1:76967084-76967103 Msa1039710:intron 35.0%
AAACTGTTTCAAAAGCAGCA+AGG - chr7_1:76967161-76967180 None:intergenic 35.0%
TGCCGAATTATTCAAATGGT+TGG - chr7_1:76967188-76967207 None:intergenic 35.0%
ATTCGGCAACTTAACTTTGT+AGG + chr7_1:76967200-76967219 Msa1039710:exon 35.0%
!! GTTTATATGCTTCTAGGACA+AGG + chr7_1:76967320-76967339 Msa1039710:three_prime_UTR 35.0%
!! GCTTTCTTTTGGCTACAAAT+AGG + chr7_1:76967430-76967449 Msa1039710:three_prime_UTR 35.0%
AAACCTGAAGAATGGACAGA+GGG - chr7_1:76963372-76963391 None:intergenic 40.0%
AAAACCTGAAGAATGGACAG+AGG - chr7_1:76963373-76963392 None:intergenic 40.0%
GTGAATCATAAGGTGGTTTG+AGG - chr7_1:76963779-76963798 None:intergenic 40.0%
GCATCATTCGAAGCAAAATC+CGG + chr7_1:76964318-76964337 Msa1039710:CDS 40.0%
GCTTGAAAAAAGGAGACGAT+GGG - chr7_1:76964371-76964390 None:intergenic 40.0%
TGCTTGAAAAAAGGAGACGA+TGG - chr7_1:76964372-76964391 None:intergenic 40.0%
!!! TCGTCTCCTTTTTTCAAGCA+AGG + chr7_1:76964372-76964391 Msa1039710:CDS 40.0%
! TTATGTTCTGCCTTTGGGTT+TGG + chr7_1:76964493-76964512 Msa1039710:intron 40.0%
GCATAACAAGACCTGAAGAT+GGG - chr7_1:76964573-76964592 None:intergenic 40.0%
TGCATAACAAGACCTGAAGA+TGG - chr7_1:76964574-76964593 None:intergenic 40.0%
! TTATGCATTTAGGGCCTGTT+TGG + chr7_1:76964587-76964606 Msa1039710:intron 40.0%
! TGGGGTTACCATTTTGCTTT+TGG + chr7_1:76964934-76964953 Msa1039710:intron 40.0%
GTAGTGTTAGTCATGCAGAT+AGG + chr7_1:76965023-76965042 Msa1039710:intron 40.0%
AGGTATAGATTTCACCAGCT+AGG + chr7_1:76965066-76965085 Msa1039710:intron 40.0%
!! TTGGAACCTCTAAGATTGAG+GGG - chr7_1:76965130-76965149 None:intergenic 40.0%
!! CTTTGGAACCTCTAAGATTG+AGG - chr7_1:76965132-76965151 None:intergenic 40.0%
AGCTATCAAACCTGAACACA+GGG + chr7_1:76965400-76965419 Msa1039710:intron 40.0%
ACAATAAAGACCCTGTGTTC+AGG - chr7_1:76965413-76965432 None:intergenic 40.0%
GTGATCTTTCCATTCATGGA+TGG + chr7_1:76965503-76965522 Msa1039710:intron 40.0%
CCATCAATACCATCCATGAA+TGG - chr7_1:76965515-76965534 None:intergenic 40.0%
! CCATTCATGGATGGTATTGA+TGG + chr7_1:76965512-76965531 Msa1039710:intron 40.0%
CACAGAGAGTTAGAATTCTC+AGG - chr7_1:76965543-76965562 None:intergenic 40.0%
CTGAGAATTCTAACTCTCTG+TGG + chr7_1:76965541-76965560 Msa1039710:intron 40.0%
!! TTTGGCTTGAATAGAACACC+CGG + chr7_1:76965769-76965788 Msa1039710:intron 40.0%
! CCAATTTCGGTAGGTTAGTT+TGG - chr7_1:76965960-76965979 None:intergenic 40.0%
CCAAACTAACCTACCGAAAT+TGG + chr7_1:76965957-76965976 Msa1039710:intron 40.0%
TAACCTACCGAAATTGGGAA+TGG + chr7_1:76965963-76965982 Msa1039710:intron 40.0%
AACCTACCGAAATTGGGAAT+GGG + chr7_1:76965964-76965983 Msa1039710:intron 40.0%
ATTCTCCCCATTCCCAATTT+CGG - chr7_1:76965973-76965992 None:intergenic 40.0%
! AGAGTATTCGTGTAACCTGT+GGG - chr7_1:76966757-76966776 None:intergenic 40.0%
!! AAGAGTATTCGTGTAACCTG+TGG - chr7_1:76966758-76966777 None:intergenic 40.0%
! CACGAATACTCTTTAGAGAC+AGG + chr7_1:76966765-76966784 Msa1039710:CDS 40.0%
! AGTTAGTACTGAGCATCTGA+AGG + chr7_1:76966824-76966843 Msa1039710:CDS 40.0%
GGATCTGTCTACCAATTCAT+TGG + chr7_1:76966864-76966883 Msa1039710:CDS 40.0%
TAAGAAGCTCGCCAATGAAT+TGG - chr7_1:76966878-76966897 None:intergenic 40.0%
! TCTTATCCGAACTGATGATG+AGG + chr7_1:76966893-76966912 Msa1039710:CDS 40.0%
ATAGAAAATCGGGTAGGCTA+AGG - chr7_1:76966946-76966965 None:intergenic 40.0%
GACATGATGACATCAAAGAG+TGG + chr7_1:76967452-76967471 Msa1039710:three_prime_UTR 40.0%
!! AGAGTGGCTTTTATTTGAGC+TGG + chr7_1:76967468-76967487 Msa1039710:three_prime_UTR 40.0%
CTGGGAGATTGTCGAAACTA+TGG + chr7_1:76964033-76964052 Msa1039710:intron 45.0%
TAGTAGCAAGTGAAGCCTGA+TGG + chr7_1:76964296-76964315 Msa1039710:exon 45.0%
TTGCTTCGAATGATGCCATC+AGG - chr7_1:76964314-76964333 None:intergenic 45.0%
TCATCAGCAACCAAACCCAA+AGG - chr7_1:76964506-76964525 None:intergenic 45.0%
! TTTGGGTTTGGTTGCTGATG+AGG + chr7_1:76964505-76964524 Msa1039710:intron 45.0%
ATGGATTTGTAGCAGGACTG+CGG + chr7_1:76964964-76964983 Msa1039710:intron 45.0%
GATTTCACCAGCTAGGAGAA+AGG + chr7_1:76965073-76965092 Msa1039710:intron 45.0%
TATGCTACCTTTCTCCTAGC+TGG - chr7_1:76965083-76965102 None:intergenic 45.0%
TGCAAGGTCCGGATAATAAC+TGG - chr7_1:76965336-76965355 None:intergenic 45.0%
AGTTATTATCCGGACCTTGC+AGG + chr7_1:76965335-76965354 Msa1039710:intron 45.0%
ATAAAACCTCCTGCAAGGTC+CGG - chr7_1:76965347-76965366 None:intergenic 45.0%
GCTAGATAAAACCTCCTGCA+AGG - chr7_1:76965352-76965371 None:intergenic 45.0%
CAGCTATCAAACCTGAACAC+AGG + chr7_1:76965399-76965418 Msa1039710:intron 45.0%
! TTGGCTTGAATAGAACACCC+GGG + chr7_1:76965770-76965789 Msa1039710:intron 45.0%
TCAAATTGATGCAGTTCCCC+GGG - chr7_1:76965790-76965809 None:intergenic 45.0%
CTCAAATTGATGCAGTTCCC+CGG - chr7_1:76965791-76965810 None:intergenic 45.0%
ACCTACCGAAATTGGGAATG+GGG + chr7_1:76965965-76965984 Msa1039710:intron 45.0%
ATCAAACCTGAGACCTTGAG+AGG + chr7_1:76965991-76966010 Msa1039710:intron 45.0%
!! AATCACTTGGATTGGCCAAG+TGG - chr7_1:76966044-76966063 None:intergenic 45.0%
ACTTGTGTAATGCATCCCAC+AGG + chr7_1:76966739-76966758 Msa1039710:intron 45.0%
TACCATCGATGACTGTTGCA+AGG - chr7_1:76966791-76966810 None:intergenic 45.0%
CACGTACCTCATCATCAGTT+CGG - chr7_1:76966902-76966921 None:intergenic 45.0%
AATACACGTTCACCCACAAC+CGG + chr7_1:76967001-76967020 Msa1039710:intron 45.0%
! CGTGTTGGTAGAAATGTCGA+CGG + chr7_1:76967109-76967128 Msa1039710:CDS 45.0%
! GTGTTGGTAGAAATGTCGAC+GGG + chr7_1:76967110-76967129 Msa1039710:CDS 45.0%
AAGCCCTCTGTCCATTCTTC+AGG + chr7_1:76963366-76963385 Msa1039710:five_prime_UTR 50.0%
TGGATTTGTAGCAGGACTGC+GGG + chr7_1:76964965-76964984 Msa1039710:intron 50.0%
TATTATCCGGACCTTGCAGG+AGG + chr7_1:76965338-76965357 Msa1039710:intron 50.0%
TGGCTTGAATAGAACACCCG+GGG + chr7_1:76965771-76965790 Msa1039710:intron 50.0%
TCCCCATTCCCAATTTCGGT+AGG - chr7_1:76965969-76965988 None:intergenic 50.0%
!! TGGCCAAGTGGTGTTGACTT+GGG - chr7_1:76966032-76966051 None:intergenic 50.0%
!! TTGGCCAAGTGGTGTTGACT+TGG - chr7_1:76966033-76966052 None:intergenic 50.0%
! GGTGGCTTGTAGCAATCGAA+TGG - chr7_1:76966633-76966652 None:intergenic 50.0%
GATGAGGTACGTGCTTGTCA+AGG + chr7_1:76966909-76966928 Msa1039710:intron 50.0%
GGTACGTGCTTGTCAAGGTT+TGG + chr7_1:76966914-76966933 Msa1039710:intron 50.0%
!! TTTCTGCATGCACCGGTTGT+GGG - chr7_1:76967016-76967035 None:intergenic 50.0%
TCACACCTTTCTGCATGCAC+CGG - chr7_1:76967023-76967042 None:intergenic 50.0%
TATGCTGTGCATGCTTCACG+AGG + chr7_1:76967493-76967512 Msa1039710:three_prime_UTR 50.0%
GAGGCTCTGCGACAAACTTA+AGG + chr7_1:76967534-76967553 Msa1039710:three_prime_UTR 50.0%
AATGTACACGACCACCGCGA+GGG - chr7_1:76963334-76963353 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr7_1:76966000-76966019 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr7_1:76966007-76966026 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr7_1:76966005-76966024 Msa1039710:intron 55.0%
!! GTGGTGTTGACTTGGGACCT+TGG - chr7_1:76966025-76966044 None:intergenic 55.0%
GGTCCCAAGTCAACACCACT+TGG + chr7_1:76966026-76966045 Msa1039710:intron 55.0%
GGCCTTGCAACAGTCATCGA+TGG + chr7_1:76966786-76966805 Msa1039710:CDS 55.0%
!! CTTTCTGCATGCACCGGTTG+TGG - chr7_1:76967017-76967036 None:intergenic 55.0%
CACAACCGGTGCATGCAGAA+AGG + chr7_1:76967015-76967034 Msa1039710:intron 55.0%
! GGAGTTTTGCAGGCACGTGT+TGG + chr7_1:76967094-76967113 Msa1039710:CDS 55.0%
CAATGTACACGACCACCGCG+AGG - chr7_1:76963335-76963354 None:intergenic 60.0%
ACGACCACCGCGAGGGTAGA+CGG - chr7_1:76963327-76963346 None:intergenic 65.0%
CGGCGGTGGAGGCAGAACAG+AGG - chr7_1:76963307-76963326 None:intergenic 70.0%
TCCACCGCCGTCTACCCTCG+CGG + chr7_1:76963317-76963336 Msa1039710:five_prime_UTR 70.0%
ACCACCGCGAGGGTAGACGG+CGG - chr7_1:76963324-76963343 None:intergenic 70.0%
GCGAGGGTAGACGGCGGTGG+AGG - chr7_1:76963318-76963337 None:intergenic 75.0%
ACCGCGAGGGTAGACGGCGG+TGG - chr7_1:76963321-76963340 None:intergenic 75.0%
ACCGCCGTCTACCCTCGCGG+TGG + chr7_1:76963320-76963339 Msa1039710:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 76963270 76967599 76963270 ID=Msa1039710;Name=Msa1039710
chr7_1 mRNA 76963270 76967599 76963270 ID=Msa1039710-mRNA-1;Parent=Msa1039710;Name=Msa1039710-mRNA-1;_AED=0.15;_eAED=0.15;_QI=155|1|1|1|0.66|0.5|4|386|125
chr7_1 exon 76963270 76963387 76963270 ID=Msa1039710-mRNA-1:exon:20053;Parent=Msa1039710-mRNA-1
chr7_1 exon 76964278 76964418 76964278 ID=Msa1039710-mRNA-1:exon:20054;Parent=Msa1039710-mRNA-1
chr7_1 exon 76966761 76966914 76966761 ID=Msa1039710-mRNA-1:exon:20055;Parent=Msa1039710-mRNA-1
chr7_1 exon 76967094 76967599 76967094 ID=Msa1039710-mRNA-1:exon:20056;Parent=Msa1039710-mRNA-1
chr7_1 five_prime_UTR 76963270 76963387 76963270 ID=Msa1039710-mRNA-1:five_prime_utr;Parent=Msa1039710-mRNA-1
chr7_1 five_prime_UTR 76964278 76964314 76964278 ID=Msa1039710-mRNA-1:five_prime_utr;Parent=Msa1039710-mRNA-1
chr7_1 CDS 76964315 76964418 76964315 ID=Msa1039710-mRNA-1:cds;Parent=Msa1039710-mRNA-1
chr7_1 CDS 76966761 76966914 76966761 ID=Msa1039710-mRNA-1:cds;Parent=Msa1039710-mRNA-1
chr7_1 CDS 76967094 76967213 76967094 ID=Msa1039710-mRNA-1:cds;Parent=Msa1039710-mRNA-1
chr7_1 three_prime_UTR 76967214 76967599 76967214 ID=Msa1039710-mRNA-1:three_prime_utr;Parent=Msa1039710-mRNA-1
Gene Sequence

>Msa1039710

ATGGCATCATTCGAAGCAAAATCCGGTGCGTTAGTTTCTTTACAAGATTTGCGCCCATCGTCTCCTTTTTTCAAGCAAGGAACATCAGTCAGAATAATTGGAAAGTTACACGAATACTCTTTAGAGACAGGCCTTGCAACAGTCATCGATGGTAATGACATTCTAAAAGTTAGTACTGAGCATCTGAAGGACCTTAAGTTTCAAGTTGGATCTGTCTACCAATTCATTGGCGAGCTTCTTATCCGAACTGATGATGAGGGAGTTTTGCAGGCACGTGTTGGTAGAAATGTCGACGGGATTGATCTCAATCTTTATCATCAGTCCTTGCTGCTTTTGAAACAGTTTCAAGCCAACCATTTGAATAATTCGGCAACTTAA

Protein sequence

>Msa1039710

MASFEAKSGALVSLQDLRPSSPFFKQGTSVRIIGKLHEYSLETGLATVIDGNDILKVSTEHLKDLKFQVGSVYQFIGELLIRTDDEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHLNNSAT*