Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184570 | XP_039684355.1 | 95.255 | 274 | 13 | 0 | 5 | 278 | 48 | 321 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184570 | sp|Q9M2E2|SDR1_ARATH | 54.579 | 273 | 116 | 5 | 5 | 274 | 26 | 293 | 3.51e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203030 | Msa1184570 | 0.803085 | 4.124236e-49 | -8.615850e-47 |
| Msa0219190 | Msa1184570 | 0.809727 | 1.640232e-50 | -8.615850e-47 |
| Msa0413930 | Msa1184570 | 0.805331 | 1.405712e-49 | -8.615850e-47 |
| Msa0298240 | Msa1184570 | 0.803843 | 2.872494e-49 | -8.615850e-47 |
| Msa1184570 | Msa1420060 | 0.820190 | 7.818425e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184570 | MtrunA17_Chr8g0349761 | 95.255 | 274 | 13 | 0 | 5 | 278 | 27 | 300 | 0.0 | 535 |
| Msa1184570 | MtrunA17_Chr8g0349771 | 92.593 | 270 | 20 | 0 | 5 | 274 | 26 | 295 | 0.0 | 509 |
| Msa1184570 | MtrunA17_Chr8g0349751 | 76.364 | 275 | 63 | 2 | 5 | 278 | 76 | 349 | 3.15e-150 | 424 |
| Msa1184570 | MtrunA17_Chr8g0349831 | 70.545 | 275 | 79 | 2 | 5 | 278 | 27 | 300 | 8.62e-140 | 395 |
| Msa1184570 | MtrunA17_Chr8g0349781 | 69.343 | 274 | 83 | 1 | 5 | 278 | 26 | 298 | 3.80e-139 | 394 |
| Msa1184570 | MtrunA17_Chr8g0349851 | 67.766 | 273 | 87 | 1 | 5 | 276 | 26 | 298 | 7.21e-137 | 388 |
| Msa1184570 | MtrunA17_Chr8g0349801 | 68.015 | 272 | 87 | 0 | 5 | 276 | 26 | 297 | 8.76e-137 | 387 |
| Msa1184570 | MtrunA17_Chr8g0349811 | 68.519 | 270 | 85 | 0 | 5 | 274 | 26 | 295 | 1.14e-136 | 387 |
| Msa1184570 | MtrunA17_Chr7g0247011 | 57.246 | 276 | 103 | 3 | 4 | 278 | 25 | 286 | 4.28e-111 | 322 |
| Msa1184570 | MtrunA17_Chr8g0349641 | 56.458 | 271 | 114 | 2 | 5 | 273 | 26 | 294 | 7.45e-106 | 309 |
| Msa1184570 | MtrunA17_Chr8g0349741 | 58.303 | 271 | 100 | 4 | 5 | 274 | 26 | 284 | 2.38e-104 | 305 |
| Msa1184570 | MtrunA17_Chr8g0349701 | 55.515 | 272 | 116 | 2 | 5 | 276 | 26 | 292 | 1.18e-103 | 303 |
| Msa1184570 | MtrunA17_Chr7g0247031 | 55.678 | 273 | 106 | 3 | 4 | 274 | 26 | 285 | 3.41e-103 | 302 |
| Msa1184570 | MtrunA17_Chr8g0349721 | 55.147 | 272 | 117 | 2 | 5 | 276 | 26 | 292 | 9.87e-103 | 301 |
| Msa1184570 | MtrunA17_Chr7g0247041 | 56.044 | 273 | 115 | 2 | 5 | 276 | 25 | 293 | 1.92e-101 | 298 |
| Msa1184570 | MtrunA17_Chr8g0349671 | 55.351 | 271 | 116 | 4 | 5 | 273 | 26 | 293 | 6.18e-101 | 296 |
| Msa1184570 | MtrunA17_Chr8g0349651 | 52.652 | 264 | 119 | 4 | 12 | 273 | 12 | 271 | 4.16e-95 | 281 |
| Msa1184570 | MtrunA17_Chr5g0425391 | 52.222 | 270 | 124 | 3 | 5 | 273 | 26 | 291 | 3.86e-94 | 279 |
| Msa1184570 | MtrunA17_Chr3g0118511 | 46.545 | 275 | 141 | 3 | 5 | 274 | 22 | 295 | 2.38e-77 | 237 |
| Msa1184570 | MtrunA17_Chr7g0267881 | 50.228 | 219 | 75 | 3 | 5 | 218 | 28 | 217 | 1.24e-63 | 199 |
| Msa1184570 | MtrunA17_Chr3g0131521 | 37.943 | 282 | 137 | 6 | 5 | 274 | 54 | 309 | 1.45e-56 | 184 |
| Msa1184570 | MtrunA17_Chr1g0160511 | 35.816 | 282 | 143 | 6 | 5 | 274 | 59 | 314 | 5.12e-48 | 162 |
| Msa1184570 | MtrunA17_Chr5g0437701 | 53.600 | 125 | 58 | 0 | 151 | 275 | 2 | 126 | 3.09e-45 | 149 |
| Msa1184570 | MtrunA17_Chr8g0385581 | 33.688 | 282 | 152 | 7 | 5 | 274 | 56 | 314 | 4.31e-43 | 149 |
| Msa1184570 | MtrunA17_Chr4g0045691 | 37.349 | 166 | 92 | 4 | 115 | 269 | 1 | 165 | 3.03e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184570 | AT3G61220.1 | 54.579 | 273 | 116 | 5 | 5 | 274 | 26 | 293 | 3.56e-101 | 298 |
| Msa1184570 | AT3G61220.2 | 54.579 | 273 | 116 | 5 | 5 | 274 | 33 | 300 | 5.35e-101 | 297 |
| Msa1184570 | AT3G61220.3 | 54.579 | 273 | 116 | 5 | 5 | 274 | 57 | 324 | 1.32e-100 | 297 |
| Msa1184570 | AT1G01800.1 | 54.044 | 272 | 120 | 3 | 5 | 274 | 24 | 292 | 1.35e-99 | 293 |
| Msa1184570 | AT2G24190.1 | 53.986 | 276 | 113 | 6 | 5 | 274 | 26 | 293 | 6.90e-97 | 286 |
| Msa1184570 | AT2G24190.2 | 53.986 | 276 | 113 | 6 | 5 | 274 | 31 | 298 | 8.49e-97 | 286 |
| Msa1184570 | AT1G01800.2 | 52.913 | 206 | 94 | 1 | 69 | 274 | 55 | 257 | 1.42e-73 | 226 |
| Msa1184570 | AT5G51030.1 | 36.170 | 282 | 142 | 6 | 5 | 274 | 57 | 312 | 2.20e-53 | 176 |
| Msa1184570 | AT3G59710.1 | 37.918 | 269 | 137 | 7 | 5 | 269 | 48 | 290 | 1.46e-52 | 174 |
| Msa1184570 | AT3G59710.3 | 37.918 | 269 | 137 | 7 | 5 | 269 | 38 | 280 | 1.58e-52 | 173 |
| Msa1184570 | AT3G59710.2 | 37.918 | 269 | 137 | 7 | 5 | 269 | 67 | 309 | 3.22e-52 | 173 |
| Msa1184570 | AT5G61830.1 | 36.396 | 283 | 143 | 6 | 5 | 274 | 56 | 314 | 4.12e-47 | 160 |
| Msa1184570 | AT5G61830.2 | 36.396 | 283 | 143 | 6 | 5 | 274 | 56 | 314 | 4.12e-47 | 160 |
Find 53 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8_1:+20362989 | None:intergenic |
| ATTTGGCAAACTTGATATTC+TGG | 0.220906 | 8_1:-20362986 | Msa1184570:intron |
| TGCTTGCAAATAAATTATTA+TGG | 0.298294 | 8_1:-20362380 | Msa1184570:CDS |
| ATCAGAAGACGAAAAGAAAA+AGG | 0.315247 | 8_1:-20362435 | Msa1184570:CDS |
| TGTAATTAATGACAAAGATT+TGG | 0.329021 | 8_1:-20362622 | Msa1184570:CDS |
| ACTCAAAGCCTCTGGTCTTT+CGG | 0.339053 | 8_1:-20363085 | Msa1184570:CDS |
| TTGGTGAATCAGATAACTTT+AGG | 0.350628 | 8_1:+20362324 | None:intergenic |
| AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8_1:+20362990 | None:intergenic |
| CATCTACTTTCTCTTCAGTT+AGG | 0.351825 | 8_1:+20361663 | None:intergenic |
| ATCCACTACAGGGAAGTTAA+AGG | 0.358802 | 8_1:-20362285 | Msa1184570:intron |
| GAAAAGAGGTCTTCATGCTT+TGG | 0.381657 | 8_1:-20363112 | Msa1184570:CDS |
| GAATGGACAAAGAAAGTCTT+TGG | 0.382879 | 8_1:-20361698 | Msa1184570:CDS |
| AGATTTCAAAGAAGGTTCAT+TGG | 0.391106 | 8_1:-20361618 | Msa1184570:CDS |
| TTTCTAGAAGATTTCAAAGA+AGG | 0.405469 | 8_1:-20361626 | Msa1184570:CDS |
| GTTAACAATGCAGGGGTTAG+TGG | 0.407866 | 8_1:-20362648 | Msa1184570:CDS |
| TATGTTACCACAGATATAAC+TGG | 0.422565 | 8_1:-20361473 | Msa1184570:CDS |
| GTTAAGCAGTTAGCTTCTGC+TGG | 0.432447 | 8_1:-20363165 | Msa1184570:intron |
| AGCAAAGGCTGGCCTAAAAC+TGG | 0.443573 | 8_1:-20361593 | Msa1184570:CDS |
| TTGATTAGTACTATGTTATG+TGG | 0.451809 | 8_1:-20361333 | Msa1184570:exon |
| ACAGATATAACTGGCAATAC+TGG | 0.452816 | 8_1:-20361464 | Msa1184570:CDS |
| CTTCCCAATGGAAGTCCATC+TGG | 0.455528 | 8_1:-20361392 | Msa1184570:CDS |
| CATCTGGCCAGTTCTATCAT+AGG | 0.462913 | 8_1:-20361376 | Msa1184570:CDS |
| TACCTTTAACTTCCCTGTAG+TGG | 0.466298 | 8_1:+20362283 | None:intergenic |
| GTGAATGTATCATCCACTAC+AGG | 0.468640 | 8_1:-20362296 | Msa1184570:CDS |
| TGAATGCAGGTTAACAATGC+AGG | 0.469107 | 8_1:-20362657 | Msa1184570:intron |
| GATGATACATTCACAATCCT+TGG | 0.480577 | 8_1:+20362305 | None:intergenic |
| CTGGCCAGATGGACTTCCAT+TGG | 0.489769 | 8_1:+20361388 | None:intergenic |
| ATAACATAGTACTAATCAAA+AGG | 0.493573 | 8_1:+20361337 | None:intergenic |
| ATACTATTGATGCATAAAGT+AGG | 0.503498 | 8_1:+20361506 | None:intergenic |
| CTTCAGTCCTATGATAGAAC+TGG | 0.507485 | 8_1:+20361369 | None:intergenic |
| TTGGAAACACTCAAAGCCTC+TGG | 0.513549 | 8_1:-20363093 | Msa1184570:CDS |
| TGGCCAGATGGACTTCCATT+GGG | 0.519704 | 8_1:+20361389 | None:intergenic |
| GAATGCAGGTTAACAATGCA+GGG | 0.530016 | 8_1:-20362656 | Msa1184570:intron |
| ATATCTGTGGTAACATAACC+AGG | 0.549903 | 8_1:+20361479 | None:intergenic |
| CTATGATAGAACTGGCCAGA+TGG | 0.550601 | 8_1:+20361377 | None:intergenic |
| TGCATCAATAGTATTTGCCC+TGG | 0.551292 | 8_1:-20361497 | Msa1184570:CDS |
| GCAGCTTTAGACAAGACATA+AGG | 0.557043 | 8_1:+20361566 | None:intergenic |
| ACAGCAAGAGATGAGAAAAG+AGG | 0.563297 | 8_1:-20363126 | Msa1184570:CDS |
| GTGAATCAGATAACTTTAGG+AGG | 0.565611 | 8_1:+20362327 | None:intergenic |
| GGTCTCTTAACTGCTGAAGA+AGG | 0.578507 | 8_1:-20361443 | Msa1184570:CDS |
| GTTCATTGGAAAGCAAAGGC+TGG | 0.581607 | 8_1:-20361604 | Msa1184570:CDS |
| AAGCTAGCATTGCTTCCCAA+TGG | 0.591803 | 8_1:-20361404 | Msa1184570:CDS |
| TGAATCAGATAACTTTAGGA+GGG | 0.593989 | 8_1:+20362328 | None:intergenic |
| GAAGGTTCATTGGAAAGCAA+AGG | 0.604153 | 8_1:-20361608 | Msa1184570:CDS |
| GAATCAGATAACTTTAGGAG+GGG | 0.624352 | 8_1:+20362329 | None:intergenic |
| AACAAAATCCGAAAGACCAG+AGG | 0.634860 | 8_1:+20363077 | None:intergenic |
| TGAATGTATCATCCACTACA+GGG | 0.652351 | 8_1:-20362295 | Msa1184570:CDS |
| AGTATTGCCAGTTATATCTG+TGG | 0.653549 | 8_1:+20361466 | None:intergenic |
| AAAGGCTGGCCTAAAACTGG+TGG | 0.657155 | 8_1:-20361590 | Msa1184570:CDS |
| AGCTTCTGCTGGAATCAAAG+TGG | 0.662194 | 8_1:-20363154 | Msa1184570:CDS |
| TAAAGTTATCTGATTCACCA+AGG | 0.666656 | 8_1:-20362322 | Msa1184570:CDS |
| AATGCAGGTTAACAATGCAG+GGG | 0.673416 | 8_1:-20362655 | Msa1184570:intron |
| TATCTGTGGTAACATAACCA+GGG | 0.727307 | 8_1:+20361480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATTAAATCTTTATTT+AGG | - | chr8_1:20362115-20362134 | Msa1184570:intron | 10.0% |
| !!! | ATGTAATTGTTTTATATTAT+GGG | - | chr8_1:20362446-20362465 | Msa1184570:intron | 10.0% |
| !! | TTTCATTTAAAAAAATGGAA+AGG | + | chr8_1:20361996-20362015 | None:intergenic | 15.0% |
| !! | CAAAGTTTCATTTAAAAAAA+TGG | + | chr8_1:20362001-20362020 | None:intergenic | 15.0% |
| !!! | ACTATTTTCATTTAAAACTA+AGG | + | chr8_1:20362058-20362077 | None:intergenic | 15.0% |
| !!! | ATAATATACACTTTTATACA+TGG | + | chr8_1:20362397-20362416 | None:intergenic | 15.0% |
| !!! | ATGTATAAAAGTGTATATTA+TGG | - | chr8_1:20362396-20362415 | Msa1184570:CDS | 15.0% |
| !!! | TGTATAAAAGTGTATATTAT+GGG | - | chr8_1:20362397-20362416 | Msa1184570:CDS | 15.0% |
| !!! | GATGTAATTGTTTTATATTA+TGG | - | chr8_1:20362445-20362464 | Msa1184570:intron | 15.0% |
| !!! | TTAATTTAGTCTTAAATTGT+AGG | - | chr8_1:20362784-20362803 | Msa1184570:intron | 15.0% |
| !!! | TAATTTAGTCTTAAATTGTA+GGG | - | chr8_1:20362785-20362804 | Msa1184570:intron | 15.0% |
| !! | TCTAAGTGATTGATTATTAA+TGG | + | chr8_1:20361246-20361265 | None:intergenic | 20.0% |
| !! | TGAATTATAGGAAAAAATGT+TGG | + | chr8_1:20361457-20361476 | None:intergenic | 20.0% |
| !!! | TTTTCCTATAATTCATTCAT+AGG | - | chr8_1:20361462-20361481 | Msa1184570:CDS | 20.0% |
| !!! | CTACATTTAACTGTAATTTT+CGG | + | chr8_1:20361522-20361541 | None:intergenic | 20.0% |
| !! | ATTCTGGTAACATAAAAATT+TGG | - | chr8_1:20361966-20361985 | Msa1184570:intron | 20.0% |
| !! | AAGGAATAAAAAAAGTAACT+TGG | + | chr8_1:20362039-20362058 | None:intergenic | 20.0% |
| !!! | TTCTTGATAACTTAATTTGA+AGG | - | chr8_1:20362200-20362219 | Msa1184570:intron | 20.0% |
| !!! | TCTTGATAACTTAATTTGAA+GGG | - | chr8_1:20362201-20362220 | Msa1184570:intron | 20.0% |
| !! | TGTAATTAATGACAAAGATT+TGG | - | chr8_1:20362314-20362333 | Msa1184570:CDS | 20.0% |
| !! | TGCTTGCAAATAAATTATTA+TGG | - | chr8_1:20362556-20362575 | Msa1184570:intron | 20.0% |
| !!! | TAAGTGCAATTTTTTTTAGA+GGG | + | chr8_1:20363040-20363059 | None:intergenic | 20.0% |
| !!! | ATAAGTGCAATTTTTTTTAG+AGG | + | chr8_1:20363041-20363060 | None:intergenic | 20.0% |
| !!! | CAAATTATTTTTTAGTCTCT+TGG | - | chr8_1:20363157-20363176 | Msa1184570:CDS | 20.0% |
| !! | ATAACATAGTACTAATCAAA+AGG | + | chr8_1:20363602-20363621 | None:intergenic | 20.0% |
| ! | ATCTTTAGTTGGAATTTGAT+TGG | + | chr8_1:20361407-20361426 | None:intergenic | 25.0% |
| ! | AATCAAATTCCAACTAAAGA+TGG | - | chr8_1:20361406-20361425 | Msa1184570:CDS | 25.0% |
| ! | ATCAAATTCCAACTAAAGAT+GGG | - | chr8_1:20361407-20361426 | Msa1184570:CDS | 25.0% |
| ! | CTATAATTCATTCATAGGAA+CGG | - | chr8_1:20361467-20361486 | Msa1184570:CDS | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | + | chr8_1:20361949-20361968 | None:intergenic | 25.0% |
| ! | CATTTAAAAAAATGGAAAGG+AGG | + | chr8_1:20361993-20362012 | None:intergenic | 25.0% |
| !!! | TATGAAAATTTGTTGAATGC+AGG | - | chr8_1:20362266-20362285 | Msa1184570:intron | 25.0% |
| ! | AGTAAGTGTCTATAAACTAT+AGG | - | chr8_1:20362362-20362381 | Msa1184570:CDS | 25.0% |
| !!! | GTATTTGATTTGAACTTTTC+AGG | - | chr8_1:20362474-20362493 | Msa1184570:intron | 25.0% |
| ! | CTTAAGAATTGATTAACACT+AGG | + | chr8_1:20362691-20362710 | None:intergenic | 25.0% |
| ! | CTAGTGTTAATCAATTCTTA+AGG | - | chr8_1:20362689-20362708 | Msa1184570:intron | 25.0% |
| !! | TAAGGTTTTTCATACAAACT+TGG | - | chr8_1:20362707-20362726 | Msa1184570:intron | 25.0% |
| !! | AATTTTTCCATCCATATCTT+AGG | - | chr8_1:20362738-20362757 | Msa1184570:intron | 25.0% |
| ! | TAATGATTCACTTTCTATCT+AGG | + | chr8_1:20362767-20362786 | None:intergenic | 25.0% |
| !!! | ATTGCTTTACATTTTTGGAT+AGG | + | chr8_1:20362916-20362935 | None:intergenic | 25.0% |
| ! | TCCAAAAATGTAAAGCAATA+AGG | - | chr8_1:20362917-20362936 | Msa1184570:intron | 25.0% |
| !! | ACCTTATTGCTTTACATTTT+TGG | + | chr8_1:20362921-20362940 | None:intergenic | 25.0% |
| ! | AAGGTATATTGTCAATTTCA+AGG | - | chr8_1:20362936-20362955 | Msa1184570:intron | 25.0% |
| ! | ATAAGTTCCACTTAAAATGA+TGG | + | chr8_1:20363134-20363153 | None:intergenic | 25.0% |
| ! | TCCAGAGAATAAAAAATGAA+TGG | - | chr8_1:20363221-20363240 | Msa1184570:intron | 25.0% |
| !!! | TCCATTCATTTTTTATTCTC+TGG | + | chr8_1:20363225-20363244 | None:intergenic | 25.0% |
| !! | TTTCTAGAAGATTTCAAAGA+AGG | - | chr8_1:20363310-20363329 | Msa1184570:intron | 25.0% |
| ! | ATACTATTGATGCATAAAGT+AGG | + | chr8_1:20363433-20363452 | None:intergenic | 25.0% |
| ! | TTGATTAGTACTATGTTATG+TGG | - | chr8_1:20363603-20363622 | Msa1184570:intron | 25.0% |
| TAGTGAAACTTTCTTGTTCT+GGG | + | chr8_1:20361300-20361319 | None:intergenic | 30.0% | |
| CGTTCCTATGAATGAATTAT+AGG | + | chr8_1:20361469-20361488 | None:intergenic | 30.0% | |
| ACAGGATCAAATAAAGGAAT+TGG | - | chr8_1:20361738-20361757 | Msa1184570:intron | 30.0% | |
| ! | CATTTTGTCAAATCCCAATT+TGG | - | chr8_1:20361933-20361952 | Msa1184570:intron | 30.0% |
| GAATATCAAGTTTGCCAAAT+TGG | + | chr8_1:20361950-20361969 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | - | chr8_1:20361950-20361969 | Msa1184570:intron | 30.0% | |
| TCATAACTCTTGTAACACAA+TGG | + | chr8_1:20362174-20362193 | None:intergenic | 30.0% | |
| GTTTATAGACACTTACTCTA+GGG | + | chr8_1:20362359-20362378 | None:intergenic | 30.0% | |
| AGTTTATAGACACTTACTCT+AGG | + | chr8_1:20362360-20362379 | None:intergenic | 30.0% | |
| ATCAGAAGACGAAAAGAAAA+AGG | - | chr8_1:20362501-20362520 | Msa1184570:intron | 30.0% | |
| ! | TGAATCAGATAACTTTAGGA+GGG | + | chr8_1:20362611-20362630 | None:intergenic | 30.0% |
| TTGGTGAATCAGATAACTTT+AGG | + | chr8_1:20362615-20362634 | None:intergenic | 30.0% | |
| TAAAGTTATCTGATTCACCA+AGG | - | chr8_1:20362614-20362633 | Msa1184570:CDS | 30.0% | |
| TATCTAGGTTACCTAAGATA+TGG | + | chr8_1:20362752-20362771 | None:intergenic | 30.0% | |
| !! | TTAGTCTTAAATTGTAGGGA+TGG | - | chr8_1:20362789-20362808 | Msa1184570:intron | 30.0% |
| ! | TAGTCTTAAATTGTAGGGAT+GGG | - | chr8_1:20362790-20362809 | Msa1184570:intron | 30.0% |
| ! | GATAGAACCATCATTTTAAG+TGG | - | chr8_1:20363124-20363143 | Msa1184570:CDS | 30.0% |
| !!! | CTTGGCTTTTAACTTGATTA+AGG | - | chr8_1:20363175-20363194 | Msa1184570:intron | 30.0% |
| AGATTTCAAAGAAGGTTCAT+TGG | - | chr8_1:20363318-20363337 | Msa1184570:intron | 30.0% | |
| TATGTTACCACAGATATAAC+TGG | - | chr8_1:20363463-20363482 | Msa1184570:intron | 30.0% | |
| CTAGTGAAACTTTCTTGTTC+TGG | + | chr8_1:20361301-20361320 | None:intergenic | 35.0% | |
| AAGTTTGTCCCATCTTTAGT+TGG | + | chr8_1:20361418-20361437 | None:intergenic | 35.0% | |
| !! | GTCAATATTCTAAAACCACG+CGG | - | chr8_1:20361685-20361704 | Msa1184570:CDS | 35.0% |
| !! | TCAATATTCTAAAACCACGC+GGG | - | chr8_1:20361686-20361705 | Msa1184570:CDS | 35.0% |
| ! | GAATCAGATAACTTTAGGAG+GGG | + | chr8_1:20362610-20362629 | None:intergenic | 35.0% |
| GTGAATCAGATAACTTTAGG+AGG | + | chr8_1:20362612-20362631 | None:intergenic | 35.0% | |
| GATGATACATTCACAATCCT+TGG | + | chr8_1:20362634-20362653 | None:intergenic | 35.0% | |
| TGAATGTATCATCCACTACA+GGG | - | chr8_1:20362641-20362660 | Msa1184570:CDS | 35.0% | |
| TAGGTTACCTAAGATATGGA+TGG | + | chr8_1:20362748-20362767 | None:intergenic | 35.0% | |
| !!! | ATTGCACTTATTTTACCACC+AGG | - | chr8_1:20363050-20363069 | Msa1184570:CDS | 35.0% |
| GTGTTACAGTGATGACATAA+CGG | + | chr8_1:20363083-20363102 | None:intergenic | 35.0% | |
| GAATGGACAAAGAAAGTCTT+TGG | - | chr8_1:20363238-20363257 | Msa1184570:intron | 35.0% | |
| CATCTACTTTCTCTTCAGTT+AGG | + | chr8_1:20363276-20363295 | None:intergenic | 35.0% | |
| TATCTGTGGTAACATAACCA+GGG | + | chr8_1:20363459-20363478 | None:intergenic | 35.0% | |
| ATATCTGTGGTAACATAACC+AGG | + | chr8_1:20363460-20363479 | None:intergenic | 35.0% | |
| AGTATTGCCAGTTATATCTG+TGG | + | chr8_1:20363473-20363492 | None:intergenic | 35.0% | |
| ACAGATATAACTGGCAATAC+TGG | - | chr8_1:20363472-20363491 | Msa1184570:intron | 35.0% | |
| !! | AACTTTCTTGTTCTGGGAAG+TGG | + | chr8_1:20361294-20361313 | None:intergenic | 40.0% |
| AGATGGGACAAACTTCAGAA+AGG | - | chr8_1:20361423-20361442 | Msa1184570:CDS | 40.0% | |
| TCTCAATTGTGATCGCATTG+CGG | - | chr8_1:20361553-20361572 | Msa1184570:CDS | 40.0% | |
| GTGGTGACAGGATCAAATAA+AGG | - | chr8_1:20361732-20361751 | Msa1184570:intron | 40.0% | |
| ACAGCAAGAGATGAGAAAAG+AGG | - | chr8_1:20361810-20361829 | Msa1184570:intron | 40.0% | |
| GAAAAGAGGTCTTCATGCTT+TGG | - | chr8_1:20361824-20361843 | Msa1184570:intron | 40.0% | |
| AACAAAATCCGAAAGACCAG+AGG | + | chr8_1:20361862-20361881 | None:intergenic | 40.0% | |
| TGAATGCAGGTTAACAATGC+AGG | - | chr8_1:20362279-20362298 | Msa1184570:intron | 40.0% | |
| GAATGCAGGTTAACAATGCA+GGG | - | chr8_1:20362280-20362299 | Msa1184570:intron | 40.0% | |
| AATGCAGGTTAACAATGCAG+GGG | - | chr8_1:20362281-20362300 | Msa1184570:intron | 40.0% | |
| GTGAATGTATCATCCACTAC+AGG | - | chr8_1:20362640-20362659 | Msa1184570:CDS | 40.0% | |
| ATCCACTACAGGGAAGTTAA+AGG | - | chr8_1:20362651-20362670 | Msa1184570:CDS | 40.0% | |
| ! | TACCTTTAACTTCCCTGTAG+TGG | + | chr8_1:20362656-20362675 | None:intergenic | 40.0% |
| GAAGGTTCATTGGAAAGCAA+AGG | - | chr8_1:20363328-20363347 | Msa1184570:intron | 40.0% | |
| ! | ACATAAGGACCACCAGTTTT+AGG | + | chr8_1:20363358-20363377 | None:intergenic | 40.0% |
| !! | GCAGCTTTAGACAAGACATA+AGG | + | chr8_1:20363373-20363392 | None:intergenic | 40.0% |
| TGCATCAATAGTATTTGCCC+TGG | - | chr8_1:20363439-20363458 | Msa1184570:intron | 40.0% | |
| CTTCAGTCCTATGATAGAAC+TGG | + | chr8_1:20363570-20363589 | None:intergenic | 40.0% | |
| GTTTGTTTCCAGGATTGCAG+TGG | - | chr8_1:20361713-20361732 | Msa1184570:CDS | 45.0% | |
| ! | GTTAAGCAGTTAGCTTCTGC+TGG | - | chr8_1:20361771-20361790 | Msa1184570:intron | 45.0% |
| AGCTTCTGCTGGAATCAAAG+TGG | - | chr8_1:20361782-20361801 | Msa1184570:intron | 45.0% | |
| TTGGAAACACTCAAAGCCTC+TGG | - | chr8_1:20361843-20361862 | Msa1184570:intron | 45.0% | |
| ! | ACTCAAAGCCTCTGGTCTTT+CGG | - | chr8_1:20361851-20361870 | Msa1184570:intron | 45.0% |
| GTTAACAATGCAGGGGTTAG+TGG | - | chr8_1:20362288-20362307 | Msa1184570:CDS | 45.0% | |
| ! | TGACATAACGGCTTTTGACC+TGG | + | chr8_1:20363071-20363090 | None:intergenic | 45.0% |
| GTTCATTGGAAAGCAAAGGC+TGG | - | chr8_1:20363332-20363351 | Msa1184570:intron | 45.0% | |
| GGTCTCTTAACTGCTGAAGA+AGG | - | chr8_1:20363493-20363512 | Msa1184570:intron | 45.0% | |
| AAGCTAGCATTGCTTCCCAA+TGG | - | chr8_1:20363532-20363551 | Msa1184570:intron | 45.0% | |
| CTATGATAGAACTGGCCAGA+TGG | + | chr8_1:20363562-20363581 | None:intergenic | 45.0% | |
| CATCTGGCCAGTTCTATCAT+AGG | - | chr8_1:20363560-20363579 | Msa1184570:intron | 45.0% | |
| ! | CATAACGGCTTTTGACCTGG+TGG | + | chr8_1:20363068-20363087 | None:intergenic | 50.0% |
| !! | AGCAAAGGCTGGCCTAAAAC+TGG | - | chr8_1:20363343-20363362 | Msa1184570:intron | 50.0% |
| !! | AAAGGCTGGCCTAAAACTGG+TGG | - | chr8_1:20363346-20363365 | Msa1184570:intron | 50.0% |
| CTTCCCAATGGAAGTCCATC+TGG | - | chr8_1:20363544-20363563 | Msa1184570:intron | 50.0% | |
| ! | TGGCCAGATGGACTTCCATT+GGG | + | chr8_1:20363550-20363569 | None:intergenic | 50.0% |
| GGAAACAAACACAACCCGCG+TGG | + | chr8_1:20361703-20361722 | None:intergenic | 55.0% | |
| ! | CGCGGGTTGTGTTTGTTTCC+AGG | - | chr8_1:20361703-20361722 | Msa1184570:CDS | 55.0% |
| TCCAGGATTGCAGTGGTGAC+AGG | - | chr8_1:20361720-20361739 | Msa1184570:intron | 55.0% | |
| TCCTGTCACCACTGCAATCC+TGG | + | chr8_1:20361724-20361743 | None:intergenic | 55.0% | |
| ! | CTGGCCAGATGGACTTCCAT+TGG | + | chr8_1:20363551-20363570 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 20361221 | 20363737 | 20361221 | ID=Msa1184570;Name=Msa1184570 |
| chr8_1 | mRNA | 20361221 | 20363737 | 20361221 | ID=Msa1184570-mRNA-1;Parent=Msa1184570;Name=Msa1184570-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.6|0.5|0.66|1|1|6|131|278 |
| chr8_1 | exon | 20361221 | 20361732 | 20361221 | ID=Msa1184570-mRNA-1:exon:7875;Parent=Msa1184570-mRNA-1 |
| chr8_1 | exon | 20362286 | 20362462 | 20362286 | ID=Msa1184570-mRNA-1:exon:7874;Parent=Msa1184570-mRNA-1 |
| chr8_1 | exon | 20362596 | 20362670 | 20362596 | ID=Msa1184570-mRNA-1:exon:7873;Parent=Msa1184570-mRNA-1 |
| chr8_1 | exon | 20362987 | 20363178 | 20362987 | ID=Msa1184570-mRNA-1:exon:7872;Parent=Msa1184570-mRNA-1 |
| chr8_1 | exon | 20363467 | 20363474 | 20363467 | ID=Msa1184570-mRNA-1:exon:7871;Parent=Msa1184570-mRNA-1 |
| chr8_1 | exon | 20363734 | 20363737 | 20363734 | ID=Msa1184570-mRNA-1:exon:7870;Parent=Msa1184570-mRNA-1 |
| chr8_1 | CDS | 20363734 | 20363737 | 20363734 | ID=Msa1184570-mRNA-1:cds;Parent=Msa1184570-mRNA-1 |
| chr8_1 | CDS | 20363467 | 20363474 | 20363467 | ID=Msa1184570-mRNA-1:cds;Parent=Msa1184570-mRNA-1 |
| chr8_1 | CDS | 20362987 | 20363178 | 20362987 | ID=Msa1184570-mRNA-1:cds;Parent=Msa1184570-mRNA-1 |
| chr8_1 | CDS | 20362596 | 20362670 | 20362596 | ID=Msa1184570-mRNA-1:cds;Parent=Msa1184570-mRNA-1 |
| chr8_1 | CDS | 20362286 | 20362462 | 20362286 | ID=Msa1184570-mRNA-1:cds;Parent=Msa1184570-mRNA-1 |
| chr8_1 | CDS | 20361352 | 20361732 | 20361352 | ID=Msa1184570-mRNA-1:cds;Parent=Msa1184570-mRNA-1 |
| chr8_1 | three_prime_UTR | 20361221 | 20361351 | 20361221 | ID=Msa1184570-mRNA-1:three_prime_utr;Parent=Msa1184570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
