AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0219190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219190 MtrunA17_Chr2g0321621 97.674 172 4 0 1 172 38 209 7.32e-126 352
Msa0219190 MtrunA17_Chr4g0026171 66.279 172 56 2 1 172 1 170 4.96e-83 242
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219190 AT2G27385.2 41.667 168 87 3 5 172 6 162 1.66e-38 129
Msa0219190 AT2G27385.1 41.667 168 87 3 5 172 17 173 2.77e-38 129
Msa0219190 AT2G27385.3 41.667 168 87 3 5 172 17 173 2.77e-38 129
Msa0219190 AT5G22430.1 45.679 162 76 5 16 172 18 172 9.79e-38 127

Find 60 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCACAATTTGGGAGAAT+TGG 0.256434 2_1:-66693518 None:intergenic
CCATATAATAGTGTAATTAA+TGG 0.257041 2_1:-66693744 None:intergenic
CCATTAATTACACTATTATA+TGG 0.261693 2_1:+66693744 Msa0219190:three_prime_UTR
TACCATGGTTTCAGGAATTA+AGG 0.295653 2_1:+66693332 Msa0219190:intron
CTTCCTTTCTTCCCCATCAT+TGG 0.318190 2_1:+66693702 Msa0219190:CDS
TGCTTTCACAACGCTCAATA+TGG 0.320675 2_1:+66691513 Msa0219190:exon
CTTGCCTCCAGAGTGGGGTT+TGG 0.331819 2_1:+66693662 Msa0219190:CDS
AATTGCCATGCAAAACTTCT+TGG 0.358597 2_1:+66693462 Msa0219190:CDS
ACTATGTCTTCCATTCTTCC+AGG 0.381148 2_1:-66693778 None:intergenic
AAAAGTAGCTAGGATATATA+TGG 0.386663 2_1:-66694013 None:intergenic
GGTTTCTTCTTGAAGCATAA+AGG 0.387581 2_1:-66693497 None:intergenic
CTTGAAGCATAAAGGTTAGT+TGG 0.400325 2_1:-66693489 None:intergenic
AGACTTTGCCCTTTACCATT+TGG 0.403798 2_1:-66691603 None:intergenic
AAGCCAGTTCATTAATTCCT+AGG 0.404092 2_1:+66693878 Msa0219190:three_prime_UTR
GCTCAGGACTATGATTTCTC+TGG 0.408161 2_1:+66691640 Msa0219190:CDS
TTTCCCCTTGCCTCCAGAGT+GGG 0.435282 2_1:+66693656 Msa0219190:CDS
TTTGCATGGCAATTATCATA+AGG 0.435517 2_1:-66693453 None:intergenic
TAGGATATATATGGTTCATA+TGG 0.447539 2_1:-66694004 None:intergenic
GAACCTAGGAATTAATGAAC+TGG 0.448462 2_1:-66693881 None:intergenic
TTCAGAATGCCAAATGGTAA+AGG 0.453521 2_1:+66691594 Msa0219190:CDS
AGAAAATGATGGCTCCTTCA+TGG 0.464326 2_1:+66693401 Msa0219190:CDS
TGATCATGGTATTCCAATGA+TGG 0.466506 2_1:-66693715 None:intergenic
TCAGAATGCCAAATGGTAAA+GGG 0.474182 2_1:+66691595 Msa0219190:CDS
AAACCCCACTCTGGAGGCAA+GGG 0.479581 2_1:-66693660 None:intergenic
TATGACCCGTGCGGCAGCAC+GGG 0.481193 2_1:-66694052 None:intergenic
CTCTTGCAATGATTGTGCTC+AGG 0.489097 2_1:+66691624 Msa0219190:CDS
TTGCACCCGTGCTGCCGCAC+GGG 0.502769 2_1:+66694047 Msa0219190:three_prime_UTR
CTTGCACCCGTGCTGCCGCA+CGG 0.504962 2_1:+66694046 Msa0219190:three_prime_UTR
TTTGTTGTCACCTGGAAGAA+TGG 0.514516 2_1:+66693768 Msa0219190:three_prime_UTR
CCAAATTGTGAAGGGAAAAG+AGG 0.515617 2_1:+66693527 Msa0219190:CDS
ATTCCAATGATGGGGAAGAA+AGG 0.527851 2_1:-66693705 None:intergenic
TGCCATGCAAAACTTCTTGG+TGG 0.529749 2_1:+66693465 Msa0219190:CDS
ATTAATGGAACATATGATCA+TGG 0.531854 2_1:-66693729 None:intergenic
CTTGGTGCCAAACCCCACTC+TGG 0.534566 2_1:-66693669 None:intergenic
CAAACCCCACTCTGGAGGCA+AGG 0.536034 2_1:-66693661 None:intergenic
TATATGGCTTTGTTGTCACC+TGG 0.537582 2_1:+66693760 Msa0219190:three_prime_UTR
AGTGAAGAAACTGAGAGGAG+TGG 0.538559 2_1:-66693568 None:intergenic
TAATAGTTCAACATAAATAC+CGG 0.538579 2_1:-66693935 None:intergenic
TTCCCCTTGCCTCCAGAGTG+GGG 0.538731 2_1:+66693657 Msa0219190:CDS
GATCATGGTATTCCAATGAT+GGG 0.544352 2_1:-66693714 None:intergenic
CGTGCGGCAGCACGGGTGCA+AGG 0.544918 2_1:-66694045 None:intergenic
TAGGAATTAATGAACTGGCT+TGG 0.558062 2_1:-66693876 None:intergenic
CCAATTCTCCCAAATTGTGA+AGG 0.561971 2_1:+66693518 Msa0219190:CDS
TGATCATTCAGAATGCCAAA+TGG 0.564476 2_1:+66691588 Msa0219190:CDS
GCCATGCAAAACTTCTTGGT+GGG 0.568791 2_1:+66693466 Msa0219190:CDS
ATATGACCCGTGCGGCAGCA+CGG 0.571780 2_1:-66694053 None:intergenic
TATGTTTAAGAAGTTTGTGA+AGG 0.572121 2_1:+66693818 Msa0219190:three_prime_UTR
ATTTCCCCTTGCCTCCAGAG+TGG 0.574643 2_1:+66693655 Msa0219190:CDS
AAAGGAAGATAATAACTACT+TGG 0.580003 2_1:-66693687 None:intergenic
TGGAAGAATGGAAGACATAG+TGG 0.581096 2_1:+66693780 Msa0219190:three_prime_UTR
AACCCCACTCTGGAGGCAAG+GGG 0.597617 2_1:-66693659 None:intergenic
ATGGCAACTACAGAAAATGA+TGG 0.598455 2_1:+66693390 Msa0219190:CDS
AAGGTCTCAATGAAGTGTGA+AGG 0.600342 2_1:+66693351 Msa0219190:CDS
GTCTAGTTACAAAAGTAGCT+AGG 0.604451 2_1:-66694023 None:intergenic
CAATTCTCCCAAATTGTGAA+GGG 0.607626 2_1:+66693519 Msa0219190:CDS
TGTGGAAAGATCAACCATGA+AGG 0.637832 2_1:-66693415 None:intergenic
GGTGCCAAACCCCACTCTGG+AGG 0.646400 2_1:-66693666 None:intergenic
ATCATGGTATTCCAATGATG+GGG 0.661584 2_1:-66693713 None:intergenic
CAAGAAGTGAAGAAACTGAG+AGG 0.684855 2_1:-66693573 None:intergenic
CGTCATCAATATGACCCGTG+CGG 0.765589 2_1:-66694061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAATAATTTTTTTTTTTG+GGG - chr2_1:66692747-66692766 None:intergenic 10.0%
!!! CAAGAATAATTTTTTTTTTT+GGG - chr2_1:66692748-66692767 None:intergenic 10.0%
!!! TCAAGAATAATTTTTTTTTT+TGG - chr2_1:66692749-66692768 None:intergenic 10.0%
!!! TTCTTATTTATGTTAAAAAT+CGG - chr2_1:66692844-66692863 None:intergenic 10.0%
!! TAATACTATCATATAATTCA+TGG + chr2_1:66692071-66692090 Msa0219190:intron 15.0%
!!! TCTTAAACTACTTTAAAAAA+TGG + chr2_1:66692504-66692523 Msa0219190:intron 15.0%
!!! CTTAAACTACTTTAAAAAAT+GGG + chr2_1:66692505-66692524 Msa0219190:intron 15.0%
!!! ATTGATAGATTAATTTGTAT+TGG + chr2_1:66692884-66692903 Msa0219190:intron 15.0%
!! AATAACTATTTAGAAATGTT+GGG - chr2_1:66693123-66693142 None:intergenic 15.0%
!!! TTTTTATTATTGGTGTCATT+AGG - chr2_1:66691878-66691897 None:intergenic 20.0%
!! CCAATAATAAAAATTATGTG+CGG + chr2_1:66691885-66691904 Msa0219190:intron 20.0%
!!! TAATTAAGCTTTAATACCTT+AGG + chr2_1:66692034-66692053 Msa0219190:intron 20.0%
!!! TATTTTGAAGAATTTACCTA+AGG - chr2_1:66692053-66692072 None:intergenic 20.0%
!!! TTTTATGTTTCTCAATGAAA+TGG + chr2_1:66692103-66692122 Msa0219190:intron 20.0%
!!! TTGATAAGTTTCTTGTTTAA+TGG + chr2_1:66692164-66692183 Msa0219190:intron 20.0%
!!! TGATAAGTTTCTTGTTTAAT+GGG + chr2_1:66692165-66692184 Msa0219190:intron 20.0%
!! TTGATCCATAATTATCTAAT+AGG + chr2_1:66692274-66692293 Msa0219190:intron 20.0%
!!! TTTAGATCTTTAGATTTGTT+GGG - chr2_1:66692305-66692324 None:intergenic 20.0%
!!! TTTTAGATCTTTAGATTTGT+TGG - chr2_1:66692306-66692325 None:intergenic 20.0%
!! ATTGTAAAACAACATGTAAA+CGG - chr2_1:66692391-66692410 None:intergenic 20.0%
!!! CTACTGATTAAAATTCATAT+GGG - chr2_1:66692646-66692665 None:intergenic 20.0%
!!! TCTACTGATTAAAATTCATA+TGG - chr2_1:66692647-66692666 None:intergenic 20.0%
!! AAAAAAAATTATTCTTGAGC+TGG + chr2_1:66692751-66692770 Msa0219190:intron 20.0%
!!! TAGATTAATTTGTATTGGTT+TGG + chr2_1:66692889-66692908 Msa0219190:intron 20.0%
!! TTCAATATGTTTATGACTAT+TGG - chr2_1:66692987-66693006 None:intergenic 20.0%
!! ATAGTCATAAACATATTGAA+TGG + chr2_1:66692987-66693006 Msa0219190:intron 20.0%
!!! ATTTTTCAACGTAAACAAAT+AGG - chr2_1:66693035-66693054 None:intergenic 20.0%
!!! ATTTTGTAAATAGTCGATTA+TGG + chr2_1:66693068-66693087 Msa0219190:intron 20.0%
!! CAATAACTATTTAGAAATGT+TGG - chr2_1:66693124-66693143 None:intergenic 20.0%
!!! TACAACTTCTCATATTTTTT+AGG + chr2_1:66693271-66693290 Msa0219190:intron 20.0%
!! CCATATAATAGTGTAATTAA+TGG - chr2_1:66693747-66693766 None:intergenic 20.0%
!! CCATTAATTACACTATTATA+TGG + chr2_1:66693744-66693763 Msa0219190:three_prime_UTR 20.0%
!! TAATAGTTCAACATAAATAC+CGG - chr2_1:66693938-66693957 None:intergenic 20.0%
! TCAGGATATATTAATAAGCT+AGG - chr2_1:66691751-66691770 None:intergenic 25.0%
! CAATGAATGACTAATATATC+TGG - chr2_1:66691850-66691869 None:intergenic 25.0%
! CAGATATATTAGTCATTCAT+TGG + chr2_1:66691848-66691867 Msa0219190:intron 25.0%
!! CCGCACATAATTTTTATTAT+TGG - chr2_1:66691888-66691907 None:intergenic 25.0%
!! ACACATATTAATCAGTTTTG+TGG - chr2_1:66692207-66692226 None:intergenic 25.0%
!!! CTCTCACTTTTTAAAAGAAA+TGG - chr2_1:66692250-66692269 None:intergenic 25.0%
!!! CATTTCTTTTAAAAAGTGAG+AGG + chr2_1:66692248-66692267 Msa0219190:intron 25.0%
!!! TTAGATCTTTAGATTTGTTG+GGG - chr2_1:66692304-66692323 None:intergenic 25.0%
! TAGTCGATTATGGATAAAAT+TGG + chr2_1:66693078-66693097 Msa0219190:intron 25.0%
! AGTTGTAAATTGAAAATGTG+TGG - chr2_1:66693311-66693330 None:intergenic 25.0%
!!! AGTTTTGCATTCTTTGTTTT+GGG - chr2_1:66693601-66693620 None:intergenic 25.0%
! AAAACTGAGAAAAATGAGTT+TGG + chr2_1:66693615-66693634 Msa0219190:CDS 25.0%
! AAAGGAAGATAATAACTACT+TGG - chr2_1:66693690-66693709 None:intergenic 25.0%
! ATTAATGGAACATATGATCA+TGG - chr2_1:66693732-66693751 None:intergenic 25.0%
! TATGTTTAAGAAGTTTGTGA+AGG + chr2_1:66693818-66693837 Msa0219190:three_prime_UTR 25.0%
! TAGGATATATATGGTTCATA+TGG - chr2_1:66694007-66694026 None:intergenic 25.0%
! AAAAGTAGCTAGGATATATA+TGG - chr2_1:66694016-66694035 None:intergenic 25.0%
AATATATCCTGATCAATCCT+AGG + chr2_1:66691759-66691778 Msa0219190:intron 30.0%
! ATATACTCCATCAACGTTTT+AGG + chr2_1:66691787-66691806 Msa0219190:intron 30.0%
CAATAAACCTAAAACGTTGA+TGG - chr2_1:66691797-66691816 None:intergenic 30.0%
TATGTTTCTCAATGAAATGG+AGG + chr2_1:66692106-66692125 Msa0219190:intron 30.0%
TTGTTTAATGGGATCCATAT+TGG + chr2_1:66692176-66692195 Msa0219190:intron 30.0%
GCTGTCCTATTAGATAATTA+TGG - chr2_1:66692282-66692301 None:intergenic 30.0%
ATTGATCCCATAAAATTACG+TGG + chr2_1:66692618-66692637 Msa0219190:intron 30.0%
AAAATTATTCTTGAGCTGGT+TGG + chr2_1:66692755-66692774 Msa0219190:intron 30.0%
GGCTCAATGTTTATTATTTG+AGG - chr2_1:66692801-66692820 None:intergenic 30.0%
!! TTGTATTGGTTTGGTACTTT+CGG + chr2_1:66692898-66692917 Msa0219190:intron 30.0%
!! TATTTGTTATTGAGACTGAC+CGG - chr2_1:66692928-66692947 None:intergenic 30.0%
TTCAATTTACAACTCTACCA+TGG + chr2_1:66693317-66693336 Msa0219190:intron 30.0%
! TATCATAAGGAAGTTTTGCA+TGG - chr2_1:66693443-66693462 None:intergenic 30.0%
TTTGCATGGCAATTATCATA+AGG - chr2_1:66693456-66693475 None:intergenic 30.0%
!!! TTTTGCATTCTTTGTTTTGG+GGG - chr2_1:66693599-66693618 None:intergenic 30.0%
!!! GTTTTGCATTCTTTGTTTTG+GGG - chr2_1:66693600-66693619 None:intergenic 30.0%
!! CAGTTTTGCATTCTTTGTTT+TGG - chr2_1:66693602-66693621 None:intergenic 30.0%
TGATCATTCAGAATGCCAAA+TGG + chr2_1:66691588-66691607 Msa0219190:CDS 35.0%
TTCAGAATGCCAAATGGTAA+AGG + chr2_1:66691594-66691613 Msa0219190:CDS 35.0%
TCAGAATGCCAAATGGTAAA+GGG + chr2_1:66691595-66691614 Msa0219190:CDS 35.0%
ATACTTACCTAGGATTGATC+AGG - chr2_1:66691769-66691788 None:intergenic 35.0%
GATGGAGTATATACTTACCT+AGG - chr2_1:66691779-66691798 None:intergenic 35.0%
TTTAATGGGATCCATATTGG+TGG + chr2_1:66692179-66692198 Msa0219190:intron 35.0%
! TGGGATCCACGTAATTTTAT+GGG - chr2_1:66692627-66692646 None:intergenic 35.0%
! ATGGGATCCACGTAATTTTA+TGG - chr2_1:66692628-66692647 None:intergenic 35.0%
!!! TTTTTTTTTTGGGGTAGCCA+AGG - chr2_1:66692738-66692757 None:intergenic 35.0%
CTAGCAAAAAATTTACGCAG+GGG - chr2_1:66693233-66693252 None:intergenic 35.0%
GCTAGCAAAAAATTTACGCA+GGG - chr2_1:66693234-66693253 None:intergenic 35.0%
AGCTAGCAAAAAATTTACGC+AGG - chr2_1:66693235-66693254 None:intergenic 35.0%
TACCATGGTTTCAGGAATTA+AGG + chr2_1:66693332-66693351 Msa0219190:intron 35.0%
ATGGCAACTACAGAAAATGA+TGG + chr2_1:66693390-66693409 Msa0219190:CDS 35.0%
AATTGCCATGCAAAACTTCT+TGG + chr2_1:66693462-66693481 Msa0219190:CDS 35.0%
CTTGAAGCATAAAGGTTAGT+TGG - chr2_1:66693492-66693511 None:intergenic 35.0%
GGTTTCTTCTTGAAGCATAA+AGG - chr2_1:66693500-66693519 None:intergenic 35.0%
CAATTCTCCCAAATTGTGAA+GGG + chr2_1:66693519-66693538 Msa0219190:CDS 35.0%
! CTCTTTTCCCTTCACAATTT+GGG - chr2_1:66693529-66693548 None:intergenic 35.0%
ATCATGGTATTCCAATGATG+GGG - chr2_1:66693716-66693735 None:intergenic 35.0%
GATCATGGTATTCCAATGAT+GGG - chr2_1:66693717-66693736 None:intergenic 35.0%
TGATCATGGTATTCCAATGA+TGG - chr2_1:66693718-66693737 None:intergenic 35.0%
TAGGAATTAATGAACTGGCT+TGG - chr2_1:66693879-66693898 None:intergenic 35.0%
AAGCCAGTTCATTAATTCCT+AGG + chr2_1:66693878-66693897 Msa0219190:three_prime_UTR 35.0%
GAACCTAGGAATTAATGAAC+TGG - chr2_1:66693884-66693903 None:intergenic 35.0%
! ACTTATCAGCTTTTGAACCT+AGG - chr2_1:66693898-66693917 None:intergenic 35.0%
!!! GTATATCTTGCTGTTTTGTC+CGG + chr2_1:66693916-66693935 Msa0219190:three_prime_UTR 35.0%
GTCTAGTTACAAAAGTAGCT+AGG - chr2_1:66694026-66694045 None:intergenic 35.0%
TGCTTTCACAACGCTCAATA+TGG + chr2_1:66691513-66691532 Msa0219190:exon 40.0%
AGACTTTGCCCTTTACCATT+TGG - chr2_1:66691606-66691625 None:intergenic 40.0%
! GTTTTGTGGATCCACCAATA+TGG - chr2_1:66692193-66692212 None:intergenic 40.0%
!! TTTTAGAGAGTGTGATGCTC+AGG + chr2_1:66692684-66692703 Msa0219190:intron 40.0%
! TTTAGAGAGTGTGATGCTCA+GGG + chr2_1:66692685-66692704 Msa0219190:intron 40.0%
! GCAATTGAACTTGTTTGAGG+TGG - chr2_1:66692822-66692841 None:intergenic 40.0%
! TCGGCAATTGAACTTGTTTG+AGG - chr2_1:66692825-66692844 None:intergenic 40.0%
AGAAGTTGTAGCATCACCAA+CGG - chr2_1:66693261-66693280 None:intergenic 40.0%
TACAACTCTACCATGGTTTC+AGG + chr2_1:66693324-66693343 Msa0219190:intron 40.0%
GACCTTAATTCCTGAAACCA+TGG - chr2_1:66693337-66693356 None:intergenic 40.0%
AAGGTCTCAATGAAGTGTGA+AGG + chr2_1:66693351-66693370 Msa0219190:CDS 40.0%
GTGTGAAGGAGTGAAAAACA+TGG + chr2_1:66693365-66693384 Msa0219190:CDS 40.0%
AGGAGTGAAAAACATGGCAA+TGG + chr2_1:66693371-66693390 Msa0219190:CDS 40.0%
AGAAAATGATGGCTCCTTCA+TGG + chr2_1:66693401-66693420 Msa0219190:CDS 40.0%
TGTGGAAAGATCAACCATGA+AGG - chr2_1:66693418-66693437 None:intergenic 40.0%
CCTTCACAATTTGGGAGAAT+TGG - chr2_1:66693521-66693540 None:intergenic 40.0%
CCAATTCTCCCAAATTGTGA+AGG + chr2_1:66693518-66693537 Msa0219190:CDS 40.0%
! CCTCTTTTCCCTTCACAATT+TGG - chr2_1:66693530-66693549 None:intergenic 40.0%
CCAAATTGTGAAGGGAAAAG+AGG + chr2_1:66693527-66693546 Msa0219190:CDS 40.0%
CAAGAAGTGAAGAAACTGAG+AGG - chr2_1:66693576-66693595 None:intergenic 40.0%
! ATTCCAATGATGGGGAAGAA+AGG - chr2_1:66693708-66693727 None:intergenic 40.0%
!! TATATGGCTTTGTTGTCACC+TGG + chr2_1:66693760-66693779 Msa0219190:three_prime_UTR 40.0%
! TTTGTTGTCACCTGGAAGAA+TGG + chr2_1:66693768-66693787 Msa0219190:three_prime_UTR 40.0%
ACTATGTCTTCCATTCTTCC+AGG - chr2_1:66693781-66693800 None:intergenic 40.0%
TGGAAGAATGGAAGACATAG+TGG + chr2_1:66693780-66693799 Msa0219190:three_prime_UTR 40.0%
CTCTTGCAATGATTGTGCTC+AGG + chr2_1:66691624-66691643 Msa0219190:CDS 45.0%
GCTCAGGACTATGATTTCTC+TGG + chr2_1:66691640-66691659 Msa0219190:CDS 45.0%
! TTAGAGAGTGTGATGCTCAG+GGG + chr2_1:66692686-66692705 Msa0219190:intron 45.0%
GTTTGGTACTTTCGGACTTC+CGG + chr2_1:66692906-66692925 Msa0219190:intron 45.0%
!!! TTTTTTGCTAGCTTCGCCGT+TGG + chr2_1:66693242-66693261 Msa0219190:intron 45.0%
! AGGAAGTTTTGCATGGCTTG+TGG - chr2_1:66693436-66693455 None:intergenic 45.0%
TGCCATGCAAAACTTCTTGG+TGG + chr2_1:66693465-66693484 Msa0219190:CDS 45.0%
GCCATGCAAAACTTCTTGGT+GGG + chr2_1:66693466-66693485 Msa0219190:CDS 45.0%
AGTGAAGAAACTGAGAGGAG+TGG - chr2_1:66693571-66693590 None:intergenic 45.0%
CTTCCTTTCTTCCCCATCAT+TGG + chr2_1:66693702-66693721 Msa0219190:CDS 45.0%
!! AATATTTATTTAATAATGTT+AGG + chr2_1:66692536-66692555 Msa0219190:intron 5.0%
!! ATTTAAAAAAAAAATATAGT+TGG + chr2_1:66693207-66693226 Msa0219190:intron 5.0%
! GCCCACCAAGAAGTTTTGCA+TGG - chr2_1:66693470-66693489 None:intergenic 50.0%
CGTCATCAATATGACCCGTG+CGG - chr2_1:66694064-66694083 None:intergenic 50.0%
AGCCCTTCATGCACATGGAG+TGG + chr2_1:66692712-66692731 Msa0219190:intron 55.0%
GGCCACTCCATGTGCATGAA+GGG - chr2_1:66692717-66692736 None:intergenic 55.0%
AGGCCACTCCATGTGCATGA+AGG - chr2_1:66692718-66692737 None:intergenic 55.0%
TCATGCACATGGAGTGGCCT+TGG + chr2_1:66692718-66692737 Msa0219190:intron 55.0%
ATTTCCCCTTGCCTCCAGAG+TGG + chr2_1:66693655-66693674 Msa0219190:CDS 55.0%
TTTCCCCTTGCCTCCAGAGT+GGG + chr2_1:66693656-66693675 Msa0219190:CDS 55.0%
! AAACCCCACTCTGGAGGCAA+GGG - chr2_1:66693663-66693682 None:intergenic 55.0%
GGCGTAGCCCTTCATGCACA+TGG + chr2_1:66692707-66692726 Msa0219190:intron 60.0%
TTCCCCTTGCCTCCAGAGTG+GGG + chr2_1:66693657-66693676 Msa0219190:CDS 60.0%
! AACCCCACTCTGGAGGCAAG+GGG - chr2_1:66693662-66693681 None:intergenic 60.0%
! CAAACCCCACTCTGGAGGCA+AGG - chr2_1:66693664-66693683 None:intergenic 60.0%
CTTGCCTCCAGAGTGGGGTT+TGG + chr2_1:66693662-66693681 Msa0219190:CDS 60.0%
!! CTTGGTGCCAAACCCCACTC+TGG - chr2_1:66693672-66693691 None:intergenic 60.0%
ATATGACCCGTGCGGCAGCA+CGG - chr2_1:66694056-66694075 None:intergenic 60.0%
GGTGCCAAACCCCACTCTGG+AGG - chr2_1:66693669-66693688 None:intergenic 65.0%
TATGACCCGTGCGGCAGCAC+GGG - chr2_1:66694055-66694074 None:intergenic 65.0%
CTTGCACCCGTGCTGCCGCA+CGG + chr2_1:66694046-66694065 Msa0219190:three_prime_UTR 70.0%
TTGCACCCGTGCTGCCGCAC+GGG + chr2_1:66694047-66694066 Msa0219190:three_prime_UTR 70.0%
CGTGCGGCAGCACGGGTGCA+AGG - chr2_1:66694048-66694067 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 66691491 66694086 66691491 ID=Msa0219190;Name=Msa0219190
chr2_1 mRNA 66691491 66694086 66691491 ID=Msa0219190-mRNA-1;Parent=Msa0219190;Name=Msa0219190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=41|1|1|1|1|1|2|352|172
chr2_1 exon 66691491 66691661 66691491 ID=Msa0219190-mRNA-1:exon:18815;Parent=Msa0219190-mRNA-1
chr2_1 exon 66693346 66694086 66693346 ID=Msa0219190-mRNA-1:exon:18816;Parent=Msa0219190-mRNA-1
chr2_1 five_prime_UTR 66691491 66691531 66691491 ID=Msa0219190-mRNA-1:five_prime_utr;Parent=Msa0219190-mRNA-1
chr2_1 CDS 66691532 66691661 66691532 ID=Msa0219190-mRNA-1:cds;Parent=Msa0219190-mRNA-1
chr2_1 CDS 66693346 66693734 66693346 ID=Msa0219190-mRNA-1:cds;Parent=Msa0219190-mRNA-1
chr2_1 three_prime_UTR 66693735 66694086 66693735 ID=Msa0219190-mRNA-1:three_prime_utr;Parent=Msa0219190-mRNA-1
Gene Sequence

>Msa0219190

ATGGCATTTGTTCATGTTATCACAACACTTCTTTTTGCATTAGCTTTTGCTAGAATTGATCATTCAGAATGCCAAATGGTAAAGGGCAAAGTCTCTTGCAATGATTGTGCTCAGGACTATGATTTCTCTGGAATTAAGGTCTCAATGAAGTGTGAAGGAGTGAAAAACATGGCAATGGCAACTACAGAAAATGATGGCTCCTTCATGGTTGATCTTTCCACAAGCCATGCAAAACTTCCTTATGATAATTGCCATGCAAAACTTCTTGGTGGGCCAACTAACCTTTATGCTTCAAGAAGAAACCAATTCTCCCAAATTGTGAAGGGAAAAGAGGAAAATAGCTACACACTATCCACTCCTCTCAGTTTCTTCACTTCTTGCCCCCAAAACAAAGAATGCAAAACTGAGAAAAATGAGTTTGGTTCATCAAAAAGCATCAATTTCCCCTTGCCTCCAGAGTGGGGTTTGGCACCAAGTAGTTATTATCTTCCTTTCTTCCCCATCATTGGAATACCATGA

Protein sequence

>Msa0219190

MAFVHVITTLLFALAFARIDHSECQMVKGKVSCNDCAQDYDFSGIKVSMKCEGVKNMAMATTENDGSFMVDLSTSHAKLPYDNCHAKLLGGPTNLYASRRNQFSQIVKGKEENSYTLSTPLSFFTSCPQNKECKTEKNEFGSSKSINFPLPPEWGLAPSSYYLPFFPIIGIP*