AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0298240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298240 MtrunA17_Chr2g0321621 97.674 172 4 0 1 172 38 209 7.32e-126 352
Msa0298240 MtrunA17_Chr4g0026171 66.279 172 56 2 1 172 1 170 4.96e-83 242
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298240 AT2G27385.2 41.667 168 87 3 5 172 6 162 1.66e-38 129
Msa0298240 AT2G27385.1 41.667 168 87 3 5 172 17 173 2.77e-38 129
Msa0298240 AT2G27385.3 41.667 168 87 3 5 172 17 173 2.77e-38 129
Msa0298240 AT5G22430.1 45.679 162 76 5 16 172 18 172 9.79e-38 127

Find 60 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCACAATTTGGGAGAAT+TGG 0.256434 2_3:-52150888 None:intergenic
CCATATAATAGTGTAATTAA+TGG 0.257041 2_3:-52151114 None:intergenic
CCATTAATTACACTATTATA+TGG 0.261693 2_3:+52151114 Msa0298240:three_prime_UTR
TACCATGGTTTCAGGAATTA+AGG 0.295653 2_3:+52150702 Msa0298240:intron
CTTCCTTTCTTCCCCATCAT+TGG 0.318190 2_3:+52151072 Msa0298240:CDS
TGCTTTCACAACGCTCAATA+TGG 0.320675 2_3:+52148857 Msa0298240:exon
CTTGCCTCCAGAGTGGGGTT+TGG 0.331819 2_3:+52151032 Msa0298240:CDS
AATTGCCATGCAAAACTTCT+TGG 0.358597 2_3:+52150832 Msa0298240:CDS
ACTATGTCTTCCATTCTTCC+AGG 0.381148 2_3:-52151148 None:intergenic
AAAAGTAGCTAGGATATATA+TGG 0.386663 2_3:-52151383 None:intergenic
GGTTTCTTCTTGAAGCATAA+AGG 0.387581 2_3:-52150867 None:intergenic
CTTGAAGCATAAAGGTTAGT+TGG 0.400325 2_3:-52150859 None:intergenic
AAGCCAGTTCATTAATTCCT+AGG 0.404092 2_3:+52151248 Msa0298240:three_prime_UTR
GCTCAGGACTATGATTTCTC+TGG 0.408161 2_3:+52148984 Msa0298240:CDS
AGACTTTGCCCTTTACCATT+TGG 0.416217 2_3:-52148947 None:intergenic
TTTCCCCTTGCCTCCAGAGT+GGG 0.435282 2_3:+52151026 Msa0298240:CDS
TTTGCATGGCAATTATCATA+AGG 0.435517 2_3:-52150823 None:intergenic
TAGGATATATATGGTTCATA+TGG 0.447539 2_3:-52151374 None:intergenic
GAACCTAGGAATTAATGAAC+TGG 0.448462 2_3:-52151251 None:intergenic
AGAAAATGATGGCTCCTTCA+TGG 0.464326 2_3:+52150771 Msa0298240:CDS
TGATCATGGTATTCCAATGA+TGG 0.466506 2_3:-52151085 None:intergenic
TTCAGAGTGCCAAATGGTAA+AGG 0.468845 2_3:+52148938 Msa0298240:CDS
AAACCCCACTCTGGAGGCAA+GGG 0.479581 2_3:-52151030 None:intergenic
TATGACCCGTGCGGCAGCAC+GGG 0.481193 2_3:-52151422 None:intergenic
TCAGAGTGCCAAATGGTAAA+GGG 0.488849 2_3:+52148939 Msa0298240:CDS
CTCTTGCAATGATTGTGCTC+AGG 0.489097 2_3:+52148968 Msa0298240:CDS
TTGCACCCGTGCTGCCGCAC+GGG 0.502769 2_3:+52151417 Msa0298240:three_prime_UTR
CTTGCACCCGTGCTGCCGCA+CGG 0.504962 2_3:+52151416 Msa0298240:three_prime_UTR
TTTGTTGTCACCTGGAAGAA+TGG 0.514516 2_3:+52151138 Msa0298240:three_prime_UTR
CCAAATTGTGAAGGGAAAAG+AGG 0.515617 2_3:+52150897 Msa0298240:CDS
ATTCCAATGATGGGGAAGAA+AGG 0.527851 2_3:-52151075 None:intergenic
TGCCATGCAAAACTTCTTGG+TGG 0.529749 2_3:+52150835 Msa0298240:CDS
ATTAATGGAACATATGATCA+TGG 0.531854 2_3:-52151099 None:intergenic
CTTGGTGCCAAACCCCACTC+TGG 0.534566 2_3:-52151039 None:intergenic
CAAACCCCACTCTGGAGGCA+AGG 0.536034 2_3:-52151031 None:intergenic
TATATGGCTTTGTTGTCACC+TGG 0.537582 2_3:+52151130 Msa0298240:three_prime_UTR
AGTGAAGAAACTGAGAGGAG+TGG 0.538559 2_3:-52150938 None:intergenic
TAATAGTTCAACATAAATAC+CGG 0.538579 2_3:-52151305 None:intergenic
TTCCCCTTGCCTCCAGAGTG+GGG 0.538731 2_3:+52151027 Msa0298240:CDS
GATCATGGTATTCCAATGAT+GGG 0.544352 2_3:-52151084 None:intergenic
CGTGCGGCAGCACGGGTGCA+AGG 0.544918 2_3:-52151415 None:intergenic
TAGGAATTAATGAACTGGCT+TGG 0.558062 2_3:-52151246 None:intergenic
CCAATTCTCCCAAATTGTGA+AGG 0.561971 2_3:+52150888 Msa0298240:CDS
GCCATGCAAAACTTCTTGGT+GGG 0.568791 2_3:+52150836 Msa0298240:CDS
ATATGACCCGTGCGGCAGCA+CGG 0.571780 2_3:-52151423 None:intergenic
TATGTTTAAGAAGTTTGTGA+AGG 0.572121 2_3:+52151188 Msa0298240:three_prime_UTR
ATTTCCCCTTGCCTCCAGAG+TGG 0.574643 2_3:+52151025 Msa0298240:CDS
TGATCATTCAGAGTGCCAAA+TGG 0.574947 2_3:+52148932 Msa0298240:CDS
AAAGGAAGATAATAACTACT+TGG 0.580003 2_3:-52151057 None:intergenic
TGGAAGAATGGAAGACATAG+TGG 0.581096 2_3:+52151150 Msa0298240:three_prime_UTR
AACCCCACTCTGGAGGCAAG+GGG 0.597617 2_3:-52151029 None:intergenic
ATGGCAACTACAGAAAATGA+TGG 0.598455 2_3:+52150760 Msa0298240:CDS
AAGGTCTCAATGAAGTGTGA+AGG 0.600342 2_3:+52150721 Msa0298240:CDS
GTCTAGTTACAAAAGTAGCT+AGG 0.604451 2_3:-52151393 None:intergenic
CAATTCTCCCAAATTGTGAA+GGG 0.607626 2_3:+52150889 Msa0298240:CDS
TGTGGAAAGATCAACCATGA+AGG 0.637832 2_3:-52150785 None:intergenic
GGTGCCAAACCCCACTCTGG+AGG 0.646400 2_3:-52151036 None:intergenic
ATCATGGTATTCCAATGATG+GGG 0.661584 2_3:-52151083 None:intergenic
CAAGAAGTGAAGAAACTGAG+AGG 0.684855 2_3:-52150943 None:intergenic
CGTCATCAATATGACCCGTG+CGG 0.765589 2_3:-52151431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAGAATAATTTTTTTTTT+GGG - chr2_3:52150119-52150138 None:intergenic 10.0%
!!! TTCTTATTTATGTTAAAAAT+CGG - chr2_3:52150214-52150233 None:intergenic 10.0%
!! TAATACTATCATATAATTCA+TGG + chr2_3:52149442-52149461 Msa0298240:intron 15.0%
!!! TCTTAAACTACTTTAAAAAA+TGG + chr2_3:52149875-52149894 Msa0298240:intron 15.0%
!!! CTTAAACTACTTTAAAAAAT+GGG + chr2_3:52149876-52149895 Msa0298240:intron 15.0%
!!! CAAGAATAATTTTTTTTTTG+GGG - chr2_3:52150118-52150137 None:intergenic 15.0%
!!! CTCAAGAATAATTTTTTTTT+TGG - chr2_3:52150120-52150139 None:intergenic 15.0%
!!! ATTGATAGATTAATTTGTAT+TGG + chr2_3:52150254-52150273 Msa0298240:intron 15.0%
!! AATAACTATTTAGAAATGTT+GGG - chr2_3:52150493-52150512 None:intergenic 15.0%
!!! TTTTTATTATTGGTGTCATT+AGG - chr2_3:52149252-52149271 None:intergenic 20.0%
!! CCAATAATAAAAATTATGTG+CGG + chr2_3:52149259-52149278 Msa0298240:intron 20.0%
!!! TAATTAAGCTTTAATACCTT+AGG + chr2_3:52149405-52149424 Msa0298240:intron 20.0%
!!! TATTTTGAAGAATTTACCTA+AGG - chr2_3:52149424-52149443 None:intergenic 20.0%
!!! TTTTATGTTTCTCAATGAAA+TGG + chr2_3:52149474-52149493 Msa0298240:intron 20.0%
!!! TTGATAAGTTTCTTGTTTAA+TGG + chr2_3:52149535-52149554 Msa0298240:intron 20.0%
!!! TGATAAGTTTCTTGTTTAAT+GGG + chr2_3:52149536-52149555 Msa0298240:intron 20.0%
!! TTGATCCATAATTATCTAAT+AGG + chr2_3:52149645-52149664 Msa0298240:intron 20.0%
!!! TTTAGATCTTTAGATTTGTT+GGG - chr2_3:52149676-52149695 None:intergenic 20.0%
!!! TTTTAGATCTTTAGATTTGT+TGG - chr2_3:52149677-52149696 None:intergenic 20.0%
!! ATTGTAAAACAACATGTAAA+CGG - chr2_3:52149762-52149781 None:intergenic 20.0%
!!! CTACTGATTAAAATTCATAT+GGG - chr2_3:52150017-52150036 None:intergenic 20.0%
!!! TCTACTGATTAAAATTCATA+TGG - chr2_3:52150018-52150037 None:intergenic 20.0%
!! AAAAAAAATTATTCTTGAGC+TGG + chr2_3:52150121-52150140 Msa0298240:intron 20.0%
!!! TAGATTAATTTGTATTGGTT+TGG + chr2_3:52150259-52150278 Msa0298240:intron 20.0%
!! TTCAATATGTTTATGACTAT+TGG - chr2_3:52150357-52150376 None:intergenic 20.0%
!! ATAGTCATAAACATATTGAA+TGG + chr2_3:52150357-52150376 Msa0298240:intron 20.0%
!!! ATTTTTCAACGTAAACAAAT+AGG - chr2_3:52150405-52150424 None:intergenic 20.0%
!!! ATTTTGTAAATAGTCGATTA+TGG + chr2_3:52150438-52150457 Msa0298240:intron 20.0%
!! CAATAACTATTTAGAAATGT+TGG - chr2_3:52150494-52150513 None:intergenic 20.0%
!!! TACAACTTCTCATATTTTTT+AGG + chr2_3:52150641-52150660 Msa0298240:intron 20.0%
!! CCATATAATAGTGTAATTAA+TGG - chr2_3:52151117-52151136 None:intergenic 20.0%
!! CCATTAATTACACTATTATA+TGG + chr2_3:52151114-52151133 Msa0298240:three_prime_UTR 20.0%
!! TAATAGTTCAACATAAATAC+CGG - chr2_3:52151308-52151327 None:intergenic 20.0%
! TCAGGATATATTAATAAGCT+AGG - chr2_3:52149125-52149144 None:intergenic 25.0%
! CAATGAATGACTAATATATC+TGG - chr2_3:52149224-52149243 None:intergenic 25.0%
! CAGATATATTAGTCATTCAT+TGG + chr2_3:52149222-52149241 Msa0298240:intron 25.0%
!! CCGCACATAATTTTTATTAT+TGG - chr2_3:52149262-52149281 None:intergenic 25.0%
!! ACACATATTAATCAGTTTTG+TGG - chr2_3:52149578-52149597 None:intergenic 25.0%
!!! CTCTCACTTTTTAAAAGAAA+TGG - chr2_3:52149621-52149640 None:intergenic 25.0%
!!! CATTTCTTTTAAAAAGTGAG+AGG + chr2_3:52149619-52149638 Msa0298240:intron 25.0%
!!! TTAGATCTTTAGATTTGTTG+GGG - chr2_3:52149675-52149694 None:intergenic 25.0%
! TAGTCGATTATGGATAAAAT+TGG + chr2_3:52150448-52150467 Msa0298240:intron 25.0%
! AGTTGTAAATTGAAAATGTG+TGG - chr2_3:52150681-52150700 None:intergenic 25.0%
!!! AGTTTTGCATTCTTTGTTTT+GGG - chr2_3:52150971-52150990 None:intergenic 25.0%
! AAAACTGAGAAAAATGAGTT+TGG + chr2_3:52150985-52151004 Msa0298240:CDS 25.0%
! AAAGGAAGATAATAACTACT+TGG - chr2_3:52151060-52151079 None:intergenic 25.0%
! ATTAATGGAACATATGATCA+TGG - chr2_3:52151102-52151121 None:intergenic 25.0%
! TATGTTTAAGAAGTTTGTGA+AGG + chr2_3:52151188-52151207 Msa0298240:three_prime_UTR 25.0%
! TAGGATATATATGGTTCATA+TGG - chr2_3:52151377-52151396 None:intergenic 25.0%
! AAAAGTAGCTAGGATATATA+TGG - chr2_3:52151386-52151405 None:intergenic 25.0%
AATATATCCTGATCAATCCT+AGG + chr2_3:52149133-52149152 Msa0298240:intron 30.0%
! ATATACTCCATCAACGTTTT+AGG + chr2_3:52149161-52149180 Msa0298240:intron 30.0%
CAATAAACCTAAAACGTTGA+TGG - chr2_3:52149171-52149190 None:intergenic 30.0%
TATGTTTCTCAATGAAATGG+AGG + chr2_3:52149477-52149496 Msa0298240:intron 30.0%
TTGTTTAATGGGATCCATAT+TGG + chr2_3:52149547-52149566 Msa0298240:intron 30.0%
GCTGTCCTATTAGATAATTA+TGG - chr2_3:52149653-52149672 None:intergenic 30.0%
ATTGATCCCATAAAATTACG+TGG + chr2_3:52149989-52150008 Msa0298240:intron 30.0%
AAAATTATTCTTGAGCTGGT+TGG + chr2_3:52150125-52150144 Msa0298240:intron 30.0%
GGCTCAATGTTTATTATTTG+AGG - chr2_3:52150171-52150190 None:intergenic 30.0%
!! TTGTATTGGTTTGGTACTTT+CGG + chr2_3:52150268-52150287 Msa0298240:intron 30.0%
!! TATTTGTTATTGAGACTGAC+CGG - chr2_3:52150298-52150317 None:intergenic 30.0%
TTCAATTTACAACTCTACCA+TGG + chr2_3:52150687-52150706 Msa0298240:intron 30.0%
! TATCATAAGGAAGTTTTGCA+TGG - chr2_3:52150813-52150832 None:intergenic 30.0%
TTTGCATGGCAATTATCATA+AGG - chr2_3:52150826-52150845 None:intergenic 30.0%
!!! TTTTGCATTCTTTGTTTTGG+GGG - chr2_3:52150969-52150988 None:intergenic 30.0%
!!! GTTTTGCATTCTTTGTTTTG+GGG - chr2_3:52150970-52150989 None:intergenic 30.0%
!! CAGTTTTGCATTCTTTGTTT+TGG - chr2_3:52150972-52150991 None:intergenic 30.0%
ATACTTACCTAGGATTGATC+AGG - chr2_3:52149143-52149162 None:intergenic 35.0%
GATGGAGTATATACTTACCT+AGG - chr2_3:52149153-52149172 None:intergenic 35.0%
TTTAATGGGATCCATATTGG+TGG + chr2_3:52149550-52149569 Msa0298240:intron 35.0%
! TGGGATCCACGTAATTTTAT+GGG - chr2_3:52149998-52150017 None:intergenic 35.0%
! ATGGGATCCACGTAATTTTA+TGG - chr2_3:52149999-52150018 None:intergenic 35.0%
!!! TTTTTTTTTTGGGGTAGCCA+AGG - chr2_3:52150109-52150128 None:intergenic 35.0%
CTAGCAAAAAATTTACGCAG+GGG - chr2_3:52150603-52150622 None:intergenic 35.0%
GCTAGCAAAAAATTTACGCA+GGG - chr2_3:52150604-52150623 None:intergenic 35.0%
AGCTAGCAAAAAATTTACGC+AGG - chr2_3:52150605-52150624 None:intergenic 35.0%
TACCATGGTTTCAGGAATTA+AGG + chr2_3:52150702-52150721 Msa0298240:intron 35.0%
ATGGCAACTACAGAAAATGA+TGG + chr2_3:52150760-52150779 Msa0298240:CDS 35.0%
AATTGCCATGCAAAACTTCT+TGG + chr2_3:52150832-52150851 Msa0298240:CDS 35.0%
CTTGAAGCATAAAGGTTAGT+TGG - chr2_3:52150862-52150881 None:intergenic 35.0%
GGTTTCTTCTTGAAGCATAA+AGG - chr2_3:52150870-52150889 None:intergenic 35.0%
CAATTCTCCCAAATTGTGAA+GGG + chr2_3:52150889-52150908 Msa0298240:CDS 35.0%
! CTCTTTTCCCTTCACAATTT+GGG - chr2_3:52150899-52150918 None:intergenic 35.0%
ATCATGGTATTCCAATGATG+GGG - chr2_3:52151086-52151105 None:intergenic 35.0%
GATCATGGTATTCCAATGAT+GGG - chr2_3:52151087-52151106 None:intergenic 35.0%
TGATCATGGTATTCCAATGA+TGG - chr2_3:52151088-52151107 None:intergenic 35.0%
TAGGAATTAATGAACTGGCT+TGG - chr2_3:52151249-52151268 None:intergenic 35.0%
AAGCCAGTTCATTAATTCCT+AGG + chr2_3:52151248-52151267 Msa0298240:three_prime_UTR 35.0%
GAACCTAGGAATTAATGAAC+TGG - chr2_3:52151254-52151273 None:intergenic 35.0%
! ACTTATCAGCTTTTGAACCT+AGG - chr2_3:52151268-52151287 None:intergenic 35.0%
!!! GTATATCTTGCTGTTTTGTC+CGG + chr2_3:52151286-52151305 Msa0298240:three_prime_UTR 35.0%
GTCTAGTTACAAAAGTAGCT+AGG - chr2_3:52151396-52151415 None:intergenic 35.0%
TGCTTTCACAACGCTCAATA+TGG + chr2_3:52148857-52148876 Msa0298240:exon 40.0%
! TGATCATTCAGAGTGCCAAA+TGG + chr2_3:52148932-52148951 Msa0298240:CDS 40.0%
! TTCAGAGTGCCAAATGGTAA+AGG + chr2_3:52148938-52148957 Msa0298240:CDS 40.0%
! TCAGAGTGCCAAATGGTAAA+GGG + chr2_3:52148939-52148958 Msa0298240:CDS 40.0%
AGACTTTGCCCTTTACCATT+TGG - chr2_3:52148950-52148969 None:intergenic 40.0%
! GTTTTGTGGATCCACCAATA+TGG - chr2_3:52149564-52149583 None:intergenic 40.0%
!! TTTTAGAGAGTGTGATGCTC+AGG + chr2_3:52150055-52150074 Msa0298240:intron 40.0%
! TTTAGAGAGTGTGATGCTCA+GGG + chr2_3:52150056-52150075 Msa0298240:intron 40.0%
! GCAATTGAACTTGTTTGAGG+TGG - chr2_3:52150192-52150211 None:intergenic 40.0%
! TCGGCAATTGAACTTGTTTG+AGG - chr2_3:52150195-52150214 None:intergenic 40.0%
AGAAGTTGTAGCATCACCAA+CGG - chr2_3:52150631-52150650 None:intergenic 40.0%
TACAACTCTACCATGGTTTC+AGG + chr2_3:52150694-52150713 Msa0298240:intron 40.0%
GACCTTAATTCCTGAAACCA+TGG - chr2_3:52150707-52150726 None:intergenic 40.0%
AAGGTCTCAATGAAGTGTGA+AGG + chr2_3:52150721-52150740 Msa0298240:CDS 40.0%
GTGTGAAGGAGTGAAAAACA+TGG + chr2_3:52150735-52150754 Msa0298240:CDS 40.0%
AGGAGTGAAAAACATGGCAA+TGG + chr2_3:52150741-52150760 Msa0298240:CDS 40.0%
AGAAAATGATGGCTCCTTCA+TGG + chr2_3:52150771-52150790 Msa0298240:CDS 40.0%
TGTGGAAAGATCAACCATGA+AGG - chr2_3:52150788-52150807 None:intergenic 40.0%
CCTTCACAATTTGGGAGAAT+TGG - chr2_3:52150891-52150910 None:intergenic 40.0%
CCAATTCTCCCAAATTGTGA+AGG + chr2_3:52150888-52150907 Msa0298240:CDS 40.0%
! CCTCTTTTCCCTTCACAATT+TGG - chr2_3:52150900-52150919 None:intergenic 40.0%
CCAAATTGTGAAGGGAAAAG+AGG + chr2_3:52150897-52150916 Msa0298240:CDS 40.0%
CAAGAAGTGAAGAAACTGAG+AGG - chr2_3:52150946-52150965 None:intergenic 40.0%
! ATTCCAATGATGGGGAAGAA+AGG - chr2_3:52151078-52151097 None:intergenic 40.0%
!! TATATGGCTTTGTTGTCACC+TGG + chr2_3:52151130-52151149 Msa0298240:three_prime_UTR 40.0%
! TTTGTTGTCACCTGGAAGAA+TGG + chr2_3:52151138-52151157 Msa0298240:three_prime_UTR 40.0%
ACTATGTCTTCCATTCTTCC+AGG - chr2_3:52151151-52151170 None:intergenic 40.0%
TGGAAGAATGGAAGACATAG+TGG + chr2_3:52151150-52151169 Msa0298240:three_prime_UTR 40.0%
CTCTTGCAATGATTGTGCTC+AGG + chr2_3:52148968-52148987 Msa0298240:CDS 45.0%
GCTCAGGACTATGATTTCTC+TGG + chr2_3:52148984-52149003 Msa0298240:CDS 45.0%
! TTAGAGAGTGTGATGCTCAG+GGG + chr2_3:52150057-52150076 Msa0298240:intron 45.0%
GTTTGGTACTTTCGGACTTC+CGG + chr2_3:52150276-52150295 Msa0298240:intron 45.0%
!!! TTTTTTGCTAGCTTCGCCGT+TGG + chr2_3:52150612-52150631 Msa0298240:intron 45.0%
! AGGAAGTTTTGCATGGCTTG+TGG - chr2_3:52150806-52150825 None:intergenic 45.0%
TGCCATGCAAAACTTCTTGG+TGG + chr2_3:52150835-52150854 Msa0298240:CDS 45.0%
GCCATGCAAAACTTCTTGGT+GGG + chr2_3:52150836-52150855 Msa0298240:CDS 45.0%
AGTGAAGAAACTGAGAGGAG+TGG - chr2_3:52150941-52150960 None:intergenic 45.0%
CTTCCTTTCTTCCCCATCAT+TGG + chr2_3:52151072-52151091 Msa0298240:CDS 45.0%
!! AATATTTATTTAATAATGTT+AGG + chr2_3:52149907-52149926 Msa0298240:intron 5.0%
!! ATTTAAAAAAAAAATATAGT+TGG + chr2_3:52150577-52150596 Msa0298240:intron 5.0%
! GCCCACCAAGAAGTTTTGCA+TGG - chr2_3:52150840-52150859 None:intergenic 50.0%
CGTCATCAATATGACCCGTG+CGG - chr2_3:52151434-52151453 None:intergenic 50.0%
AGCCCTTCATGCACATGGAG+TGG + chr2_3:52150083-52150102 Msa0298240:intron 55.0%
GGCCACTCCATGTGCATGAA+GGG - chr2_3:52150088-52150107 None:intergenic 55.0%
AGGCCACTCCATGTGCATGA+AGG - chr2_3:52150089-52150108 None:intergenic 55.0%
TCATGCACATGGAGTGGCCT+TGG + chr2_3:52150089-52150108 Msa0298240:intron 55.0%
ATTTCCCCTTGCCTCCAGAG+TGG + chr2_3:52151025-52151044 Msa0298240:CDS 55.0%
TTTCCCCTTGCCTCCAGAGT+GGG + chr2_3:52151026-52151045 Msa0298240:CDS 55.0%
! AAACCCCACTCTGGAGGCAA+GGG - chr2_3:52151033-52151052 None:intergenic 55.0%
GGCGTAGCCCTTCATGCACA+TGG + chr2_3:52150078-52150097 Msa0298240:intron 60.0%
TTCCCCTTGCCTCCAGAGTG+GGG + chr2_3:52151027-52151046 Msa0298240:CDS 60.0%
! AACCCCACTCTGGAGGCAAG+GGG - chr2_3:52151032-52151051 None:intergenic 60.0%
! CAAACCCCACTCTGGAGGCA+AGG - chr2_3:52151034-52151053 None:intergenic 60.0%
CTTGCCTCCAGAGTGGGGTT+TGG + chr2_3:52151032-52151051 Msa0298240:CDS 60.0%
!! CTTGGTGCCAAACCCCACTC+TGG - chr2_3:52151042-52151061 None:intergenic 60.0%
ATATGACCCGTGCGGCAGCA+CGG - chr2_3:52151426-52151445 None:intergenic 60.0%
GGTGCCAAACCCCACTCTGG+AGG - chr2_3:52151039-52151058 None:intergenic 65.0%
TATGACCCGTGCGGCAGCAC+GGG - chr2_3:52151425-52151444 None:intergenic 65.0%
CTTGCACCCGTGCTGCCGCA+CGG + chr2_3:52151416-52151435 Msa0298240:three_prime_UTR 70.0%
TTGCACCCGTGCTGCCGCAC+GGG + chr2_3:52151417-52151436 Msa0298240:three_prime_UTR 70.0%
CGTGCGGCAGCACGGGTGCA+AGG - chr2_3:52151418-52151437 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 52148835 52151456 52148835 ID=Msa0298240;Name=Msa0298240
chr2_3 mRNA 52148835 52151456 52148835 ID=Msa0298240-mRNA-1;Parent=Msa0298240;Name=Msa0298240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=41|1|1|1|1|1|2|352|172
chr2_3 exon 52148835 52149005 52148835 ID=Msa0298240-mRNA-1:exon:16623;Parent=Msa0298240-mRNA-1
chr2_3 exon 52150716 52151456 52150716 ID=Msa0298240-mRNA-1:exon:16624;Parent=Msa0298240-mRNA-1
chr2_3 five_prime_UTR 52148835 52148875 52148835 ID=Msa0298240-mRNA-1:five_prime_utr;Parent=Msa0298240-mRNA-1
chr2_3 CDS 52148876 52149005 52148876 ID=Msa0298240-mRNA-1:cds;Parent=Msa0298240-mRNA-1
chr2_3 CDS 52150716 52151104 52150716 ID=Msa0298240-mRNA-1:cds;Parent=Msa0298240-mRNA-1
chr2_3 three_prime_UTR 52151105 52151456 52151105 ID=Msa0298240-mRNA-1:three_prime_utr;Parent=Msa0298240-mRNA-1
Gene Sequence

>Msa0298240

ATGGCATTTGTTCATGTTATCACAACACTTCTTTTTGCATTAGCTTTTGCTAGAATTGATCATTCAGAGTGCCAAATGGTAAAGGGCAAAGTCTCTTGCAATGATTGTGCTCAGGACTATGATTTCTCTGGAATTAAGGTCTCAATGAAGTGTGAAGGAGTGAAAAACATGGCAATGGCAACTACAGAAAATGATGGCTCCTTCATGGTTGATCTTTCCACAAGCCATGCAAAACTTCCTTATGATAATTGCCATGCAAAACTTCTTGGTGGGCCAACTAACCTTTATGCTTCAAGAAGAAACCAATTCTCCCAAATTGTGAAGGGAAAAGAGGAAAATAGCTACACACTATCCACTCCTCTCAGTTTCTTCACTTCTTGCCCCCAAAACAAAGAATGCAAAACTGAGAAAAATGAGTTTGGTTCATCAAAAAGCATCAATTTCCCCTTGCCTCCAGAGTGGGGTTTGGCACCAAGTAGTTATTATCTTCCTTTCTTCCCCATCATTGGAATACCATGA

Protein sequence

>Msa0298240

MAFVHVITTLLFALAFARIDHSECQMVKGKVSCNDCAQDYDFSGIKVSMKCEGVKNMAMATTENDGSFMVDLSTSHAKLPYDNCHAKLLGGPTNLYASRRNQFSQIVKGKEENSYTLSTPLSFFTSCPQNKECKTEKNEFGSSKSINFPLPPEWGLAPSSYYLPFFPIIGIP*