AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1185520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185520 MtrunA17_Chr8g0351171 96.238 319 12 0 1 319 1 319 0.0 650
Msa1185520 MtrunA17_Chr8g0351211 40.881 318 182 4 5 318 2 317 1.98e-90 273
Msa1185520 MtrunA17_Chr8g0351201 42.138 318 178 4 2 317 11 324 4.02e-90 272
Msa1185520 MtrunA17_Chr6g0474411 39.375 320 180 5 4 317 15 326 2.64e-83 254
Msa1185520 MtrunA17_Chr6g0474491 36.250 320 190 5 5 317 12 324 2.79e-73 229
Msa1185520 MtrunA17_Chr6g0474471 35.312 320 193 6 5 317 13 325 4.88e-72 226
Msa1185520 MtrunA17_Chr1g0204211 37.975 316 181 5 2 312 28 333 1.54e-71 224
Msa1185520 MtrunA17_Chr1g0204201 37.037 324 187 6 4 318 11 326 1.82e-71 224
Msa1185520 MtrunA17_Chr6g0474541 37.742 310 181 6 5 310 41 342 1.85e-69 220
Msa1185520 MtrunA17_Chr6g0474631 35.577 312 181 9 15 317 24 324 7.66e-64 204
Msa1185520 MtrunA17_Chr7g0214851 32.407 324 198 8 12 317 29 349 1.32e-52 176
Msa1185520 MtrunA17_Chr1g0210121 31.818 308 188 10 12 309 34 329 4.71e-45 156
Msa1185520 MtrunA17_Chr6g0477231 32.414 290 176 5 10 287 23 304 7.21e-44 153
Msa1185520 MtrunA17_Chr6g0477161 35.206 267 154 6 29 287 48 303 1.22e-43 159
Msa1185520 MtrunA17_Chr6g0477161 33.333 282 167 7 17 287 381 652 8.82e-41 150
Msa1185520 MtrunA17_Chr7g0268091 31.447 318 192 11 12 318 15 317 4.86e-41 145
Msa1185520 MtrunA17_Chr6g0477251 30.696 316 198 7 13 317 582 887 2.68e-39 147
Msa1185520 MtrunA17_Chr6g0477251 30.063 316 200 7 13 317 28 333 4.16e-39 146
Msa1185520 MtrunA17_Chr6g0477271 33.213 277 168 7 17 287 55 320 1.27e-38 140
Msa1185520 MtrunA17_Chr4g0025291 28.214 280 189 5 44 317 42 315 5.51e-36 132
Msa1185520 MtrunA17_Chr4g0045181 31.225 253 164 4 33 283 35 279 9.24e-35 129
Msa1185520 MtrunA17_Chr1g0191301 31.613 310 178 10 8 296 25 321 6.79e-34 127
Msa1185520 MtrunA17_Chr3g0081521 30.627 271 174 5 57 317 74 340 4.63e-33 124
Msa1185520 MtrunA17_Chr6g0474611 36.471 170 98 4 157 317 2 170 6.91e-33 119
Msa1185520 MtrunA17_Chr7g0235741 31.148 244 156 5 43 283 77 311 1.81e-31 120
Msa1185520 MtrunA17_Chr4g0045131 30.375 293 183 8 33 317 75 354 2.80e-31 120
Msa1185520 MtrunA17_Chr3g0133701 29.537 281 170 8 12 283 15 276 2.87e-31 119
Msa1185520 MtrunA17_Chr6g0477241 31.651 218 131 5 17 225 43 251 8.24e-31 117
Msa1185520 MtrunA17_Chr7g0259161 28.981 314 187 10 8 296 25 327 8.26e-31 119
Msa1185520 MtrunA17_Chr4g0045121 31.225 253 161 5 33 283 38 279 5.62e-30 116
Msa1185520 MtrunA17_Chr1g0196311 31.164 292 166 10 8 279 41 317 6.22e-30 116
Msa1185520 MtrunA17_Chr5g0394251 29.893 281 183 9 17 290 26 299 8.00e-30 115
Msa1185520 MtrunA17_Chr4g0045191 28.713 303 177 8 17 314 31 299 1.05e-28 112
Msa1185520 MtrunA17_Chr1g0149271 34.199 231 128 7 17 241 16 228 4.07e-27 108
Msa1185520 MtrunA17_Chr1g0205871 31.475 305 179 12 17 301 21 315 4.65e-26 105
Msa1185520 MtrunA17_Chr5g0394241 29.924 264 167 8 17 271 22 276 6.98e-26 105
Msa1185520 MtrunA17_Chr5g0394211 33.471 242 135 10 17 246 56 283 4.49e-25 103
Msa1185520 MtrunA17_Chr8g0353951 29.221 308 195 11 17 314 29 323 8.56e-24 99.4
Msa1185520 MtrunA17_Chr6g0458881 28.906 256 145 7 64 284 147 400 1.23e-23 100
Msa1185520 MtrunA17_Chr3g0095711 31.203 266 159 10 17 271 66 318 1.48e-23 99.4
Msa1185520 MtrunA17_Chr7g0228721 29.864 221 116 4 65 246 156 376 2.04e-23 100
Msa1185520 MtrunA17_Chr7g0233871 31.136 273 172 11 17 283 25 287 1.24e-21 93.6
Msa1185520 MtrunA17_Chr1g0205781 30.769 273 170 11 17 283 25 284 1.25e-20 90.5
Msa1185520 MtrunA17_Chr1g0205791 30.488 246 153 8 43 283 46 278 8.64e-18 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185520 AT2G45610.1 52.698 315 148 1 4 317 9 323 9.00e-124 358
Msa1185520 AT2G45600.1 40.123 324 166 8 5 317 9 315 1.27e-81 251
Msa1185520 AT5G62180.1 35.404 322 194 6 5 318 9 324 1.78e-68 217
Msa1185520 AT1G68620.1 32.567 261 163 6 17 275 36 285 3.93e-38 138
Msa1185520 AT5G16080.1 30.142 282 182 8 32 307 54 326 1.54e-33 126
Msa1185520 AT5G23530.1 29.617 287 180 8 16 296 34 304 4.84e-33 125
Msa1185520 AT5G06570.1 33.080 263 162 8 40 297 46 299 1.92e-32 123
Msa1185520 AT5G06570.2 33.080 263 162 8 40 297 46 299 1.92e-32 123
Msa1185520 AT5G06570.3 33.080 263 162 8 40 297 61 314 2.44e-32 123
Msa1185520 AT5G06570.4 33.080 263 162 8 40 297 61 314 2.44e-32 123
Msa1185520 AT5G27320.1 29.032 310 185 10 8 296 25 320 1.81e-30 118
Msa1185520 AT3G63010.1 29.470 302 176 10 16 296 37 322 1.73e-29 115
Msa1185520 AT3G05120.1 29.470 302 175 10 8 287 25 310 2.62e-28 112
Msa1185520 AT1G19190.1 28.571 266 167 7 26 283 25 275 7.26e-27 108
Msa1185520 AT3G48690.1 29.286 280 180 7 12 283 13 282 3.02e-26 106
Msa1185520 AT1G47480.1 28.676 272 174 7 12 281 16 269 3.29e-26 106
Msa1185520 AT5G14310.1 29.688 256 143 5 65 284 142 396 1.24e-25 106
Msa1185520 AT2G03550.1 28.231 294 195 6 29 317 28 310 6.18e-25 102
Msa1185520 AT3G27320.2 29.278 263 148 7 58 284 118 378 8.38e-24 101
Msa1185520 AT3G27320.1 29.278 263 148 7 58 284 150 410 1.35e-23 100
Msa1185520 AT1G49650.1 33.511 188 115 4 17 201 74 254 1.71e-23 99.8
Msa1185520 AT1G49660.1 27.778 270 182 6 17 282 18 278 2.36e-23 98.6
Msa1185520 AT1G49640.1 31.319 182 118 3 22 202 21 196 3.75e-23 97.8
Msa1185520 AT3G48700.1 28.431 204 137 4 33 230 32 232 6.48e-22 94.7

Find 110 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAAATGTCAAGAAATT+AGG 0.125161 8_1:+22717188 Msa1185520:CDS
CCATCGAGGTGTTATCTTTA+TGG 0.162050 8_1:+22716319 Msa1185520:CDS
ATCATCAATTGTTATGTCTT+TGG 0.205110 8_1:-22715981 None:intergenic
CTCAATCCAAAGTGGTTATA+TGG 0.248180 8_1:-22715869 None:intergenic
TTAGGGAGGTGTCTTGTTAT+TGG 0.287339 8_1:+22717206 Msa1185520:CDS
TTCGGGGTTCGCGTCGGTTG+AGG 0.309991 8_1:-22715933 None:intergenic
TGGAAAATGTCAAGAAATTA+GGG 0.314810 8_1:+22717189 Msa1185520:CDS
CTGGATTATTAATGTAAGTT+TGG 0.326120 8_1:+22717460 Msa1185520:three_prime_UTR
AAAGGACGGCCTCGGAAATA+AGG 0.329749 8_1:+22716458 Msa1185520:CDS
TAGGGAGGTGTCTTGTTATT+GGG 0.337672 8_1:+22717207 Msa1185520:CDS
TCTTTGTATTTCTCTTAGTC+TGG 0.345016 8_1:+22717441 Msa1185520:three_prime_UTR
AATGGCAAAAGGACCACATT+TGG 0.377354 8_1:+22717169 Msa1185520:CDS
GTCGGTTGAGGGTGTCTTGT+AGG 0.384926 8_1:-22715921 None:intergenic
CGCGAACCCCGAACCTTCAC+CGG 0.388207 8_1:+22715943 Msa1185520:CDS
ATATTGATTTACTTTCATAA+TGG 0.392883 8_1:+22716079 Msa1185520:CDS
ATATGGACTTAGAGCCTCTA+AGG 0.394329 8_1:+22716392 Msa1185520:CDS
TCGGGGTTCGCGTCGGTTGA+GGG 0.394609 8_1:-22715932 None:intergenic
TGGGCCATGGCTTTGCCTAC+GGG 0.409884 8_1:+22717116 Msa1185520:CDS
GGCCATGCAGATTGGAGATA+TGG 0.411498 8_1:+22716375 Msa1185520:CDS
ACAAGGCCACTAATCCTTAG+AGG 0.416771 8_1:-22716406 None:intergenic
GACTTTGCCCTTACCAGTGT+TGG 0.417668 8_1:+22717085 Msa1185520:CDS
TTACTTTCATAATGGTGGTT+GGG 0.428229 8_1:+22716087 Msa1185520:CDS
GTGGGCCATGGCTTTGCCTA+CGG 0.428532 8_1:+22717115 Msa1185520:CDS
ATAACCGCACTAGCTCTAGT+AGG 0.431582 8_1:-22717350 None:intergenic
TTTACTTTCATAATGGTGGT+TGG 0.431824 8_1:+22716086 Msa1185520:CDS
TTTGATCCATATAACCACTT+TGG 0.433703 8_1:+22715863 Msa1185520:CDS
AGGTGTCTTGTTATTGGGTA+TGG 0.434253 8_1:+22717212 Msa1185520:CDS
TATCTTTATGGATGTGGTTG+TGG 0.434607 8_1:+22716331 Msa1185520:CDS
TGTCTCTGTCGCCTTTCGTT+GGG 0.438448 8_1:+22716183 Msa1185520:CDS
CTCAACCATTGCTCTCCATC+AGG 0.438600 8_1:-22716283 None:intergenic
TTATGAAAGTAAATCAATAT+CGG 0.442305 8_1:-22716076 None:intergenic
ATCCTAAGCCCGGCTGATGC+TGG 0.450512 8_1:+22716112 Msa1185520:CDS
TTGTCTCTGTCGCCTTTCGT+TGG 0.451494 8_1:+22716182 Msa1185520:CDS
CCATTGGATTGCAATACCTA+TGG 0.454707 8_1:-22717151 None:intergenic
TTAGAGCCTCTAAGGATTAG+TGG 0.468499 8_1:+22716400 Msa1185520:CDS
TTCAATACGGCCATGCAGAT+TGG 0.469246 8_1:+22716367 Msa1185520:CDS
GCCACGGTATTGTCGTTTGA+TGG 0.470251 8_1:-22716046 None:intergenic
TTATGGGTACCAGCATCAGC+CGG 0.476238 8_1:-22716121 None:intergenic
GGGGTTCCACAATATTGATA+TGG 0.477353 8_1:+22717322 Msa1185520:CDS
TACCAGCATCAGCCGGGCTT+AGG 0.478525 8_1:-22716114 None:intergenic
GCGACAGAGACAACAATACT+AGG 0.481339 8_1:-22716172 None:intergenic
GAGCAATGGTTGAGAGACTA+TGG 0.482302 8_1:+22716292 Msa1185520:CDS
GCGAACCCCGAACCTTCACC+GGG 0.488799 8_1:+22715944 Msa1185520:CDS
CATCATGTCCAACACTGGTA+AGG 0.489057 8_1:-22717093 None:intergenic
AGGTGTTATCTTTATGGATG+TGG 0.490354 8_1:+22716325 Msa1185520:CDS
TGGAGAGAAAAGGACGGCCT+CGG 0.492416 8_1:+22716450 Msa1185520:CDS
CAGCGTAGGTTACTTAAGCA+TGG 0.502232 8_1:+22717485 Msa1185520:three_prime_UTR
TTCGTTGGGCGCCAGAGACT+AGG 0.511728 8_1:+22716197 Msa1185520:CDS
TGAAGCTAGGTTTGATCCTG+TGG 0.511841 8_1:+22717301 Msa1185520:CDS
TTGATTTACTTTCATAATGG+TGG 0.512216 8_1:+22716082 Msa1185520:CDS
TGTCTTGTTATTGGGTATGG+TGG 0.512697 8_1:+22717215 Msa1185520:CDS
GAAGCTAGGTTTGATCCTGT+GGG 0.513214 8_1:+22717302 Msa1185520:CDS
TGACCATGTTGGTCAAATGT+GGG 0.525547 8_1:+22717270 Msa1185520:CDS
AATTATGAACCTTATTTCCG+AGG 0.528856 8_1:-22716467 None:intergenic
TATTGCAATCCAATGGCAAA+AGG 0.529808 8_1:+22717158 Msa1185520:CDS
ACACTGGTAAGGGCAAAGTC+TGG 0.531768 8_1:-22717082 None:intergenic
GTGACCATGTTGGTCAAATG+TGG 0.535257 8_1:+22717269 Msa1185520:CDS
TTCTTCCAAAAGGTTTGCAA+CGG 0.535946 8_1:+22717058 Msa1185520:intron
TATGGGTACCAGCATCAGCC+GGG 0.538444 8_1:-22716120 None:intergenic
AATCAAATGACGAATCCTGA+TGG 0.539467 8_1:+22716268 Msa1185520:CDS
TTGTTCTTGAAGGATGATGA+TGG 0.545002 8_1:-22715820 None:intergenic
GTGGGGTCCAAGTTGAAGCT+AGG 0.545021 8_1:+22717288 Msa1185520:CDS
GATCAAACCTAGCTTCAACT+TGG 0.549036 8_1:-22717295 None:intergenic
TTGAGGGTGTCTTGTAGGCA+CGG 0.553474 8_1:-22715916 None:intergenic
TACCAGTGTTGGACATGATG+TGG 0.554021 8_1:+22717096 Msa1185520:CDS
TGGGTATGGTGGAGACATCA+TGG 0.554451 8_1:+22717226 Msa1185520:CDS
GTTGGACATGATGTGGGCCA+TGG 0.554890 8_1:+22717103 Msa1185520:CDS
CGAGCATCTTGATATTGTCC+AGG 0.555624 8_1:-22716223 None:intergenic
TGTCCAGGTAACCTAGTCTC+TGG 0.556343 8_1:-22716208 None:intergenic
GGTCAACCATATCAATATTG+TGG 0.557103 8_1:-22717328 None:intergenic
CATAAAGATAACACCTCGAT+GGG 0.558427 8_1:-22716318 None:intergenic
GCGCCAGAGACTAGGTTACC+TGG 0.559291 8_1:+22716205 Msa1185520:CDS
TGCAAACATTGTGTTCAATA+CGG 0.560159 8_1:+22716354 Msa1185520:CDS
GTGCGGTTATAAATATTGCA+AGG 0.561146 8_1:+22717363 Msa1185520:CDS
AGCGTAGGTTACTTAAGCAT+GGG 0.562348 8_1:+22717486 Msa1185520:three_prime_UTR
ATGTAAGTTTGGTGCAGCGT+AGG 0.563718 8_1:+22717471 Msa1185520:three_prime_UTR
GGATTGAGTTTCAATCCTGA+CGG 0.564876 8_1:+22715884 Msa1185520:CDS
TGAAGGTTCGGGGTTCGCGT+CGG 0.566328 8_1:-22715939 None:intergenic
AGTCTCTGGCGCCCAACGAA+AGG 0.566700 8_1:-22716194 None:intergenic
GCACGGTGGAGAGTTCCGTC+AGG 0.576931 8_1:-22715899 None:intergenic
TAACCGCACTAGCTCTAGTA+GGG 0.577127 8_1:-22717349 None:intergenic
TGGTTGGGTCATCCTAAGCC+CGG 0.577877 8_1:+22716102 Msa1185520:CDS
ATCATGTCCAACACTGGTAA+GGG 0.578520 8_1:-22717092 None:intergenic
TCAATATTGTGGAACCCCAC+AGG 0.582193 8_1:-22717317 None:intergenic
CCATAAAGATAACACCTCGA+TGG 0.586600 8_1:-22716319 None:intergenic
GCCCACATCATGTCCAACAC+TGG 0.603571 8_1:-22717098 None:intergenic
TGCGGTTATAAATATTGCAA+GGG 0.608893 8_1:+22717364 Msa1185520:CDS
GTCCATATCTCCAATCTGCA+TGG 0.609856 8_1:-22716377 None:intergenic
GGGCCATGGCTTTGCCTACG+GGG 0.610243 8_1:+22717117 Msa1185520:CDS
CGGGGACAAATCGTGACCAT+AGG 0.613124 8_1:+22717135 Msa1185520:CDS
AAGCTAGGTTTGATCCTGTG+GGG 0.615240 8_1:+22717303 Msa1185520:CDS
CCATAGGTATTGCAATCCAA+TGG 0.617062 8_1:+22717151 Msa1185520:CDS
ACATAGGTTGATTCATAACA+AGG 0.617116 8_1:-22716423 None:intergenic
GAACCCCGAACCTTCACCGG+GGG 0.629310 8_1:+22715946 Msa1185520:CDS
ACCAGTGTTGGACATGATGT+GGG 0.635087 8_1:+22717097 Msa1185520:CDS
ACAAGAATTTGTGACCATGT+TGG 0.638031 8_1:+22717259 Msa1185520:CDS
TTGGACACCGTAGAAACCCC+CGG 0.639060 8_1:-22715962 None:intergenic
GACCCCACATTTGACCAACA+TGG 0.646567 8_1:-22717273 None:intergenic
GATTGAAACTCAATCCAAAG+TGG 0.656440 8_1:-22715877 None:intergenic
TGTCCCCGTAGGCAAAGCCA+TGG 0.658805 8_1:-22717120 None:intergenic
GACCATGTTGGTCAAATGTG+GGG 0.660571 8_1:+22717271 Msa1185520:CDS
GCGTAGGTTACTTAAGCATG+GGG 0.671820 8_1:+22717487 Msa1185520:three_prime_UTR
TGACCCTACTAGAGCTAGTG+CGG 0.675155 8_1:+22717346 Msa1185520:CDS
TGGTCACGATTTGTCCCCGT+AGG 0.679424 8_1:-22717131 None:intergenic
AAAATGTCAAGAAATTAGGG+AGG 0.680447 8_1:+22717192 Msa1185520:CDS
CGAATCCTGATGGAGAGCAA+TGG 0.687815 8_1:+22716278 Msa1185520:CDS
GAGACTATGGTGACCCATCG+AGG 0.705564 8_1:+22716305 Msa1185520:CDS
ACCATCAAACGACAATACCG+TGG 0.707154 8_1:+22716045 Msa1185520:CDS
AGGGTGTCTTGTAGGCACGG+TGG 0.724739 8_1:-22715913 None:intergenic
CGAACCCCGAACCTTCACCG+GGG 0.774672 8_1:+22715945 Msa1185520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTTTGACATTATTTT+TGG - chr8_1:22715848-22715867 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - chr8_1:22716079-22716098 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + chr8_1:22716079-22716098 Msa1185520:CDS 15.0%
!!! ATTTCATTTTAGTTTTATTG+AGG + chr8_1:22716830-22716849 Msa1185520:intron 15.0%
!! TAAAATTTCAAACATCTATA+AGG - chr8_1:22716892-22716911 None:intergenic 15.0%
!!! TCAAATTTTGACATTATTTT+TGG - chr8_1:22715848-22715867 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - chr8_1:22716079-22716098 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + chr8_1:22716079-22716098 Msa1185520:CDS 15.0%
!!! ATTTCATTTTAGTTTTATTG+AGG + chr8_1:22716830-22716849 Msa1185520:intron 15.0%
!! TAAAATTTCAAACATCTATA+AGG - chr8_1:22716892-22716911 None:intergenic 15.0%
!!! TTGATGATGAGAAAAAAATA+TGG + chr8_1:22715996-22716015 Msa1185520:CDS 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + chr8_1:22715997-22716016 Msa1185520:CDS 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - chr8_1:22716140-22716159 None:intergenic 20.0%
!!! AAAATATATCTTGACTTGTT+TGG + chr8_1:22716581-22716600 Msa1185520:intron 20.0%
!!! TTGATGATGAGAAAAAAATA+TGG + chr8_1:22715996-22716015 Msa1185520:CDS 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + chr8_1:22715997-22716016 Msa1185520:CDS 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - chr8_1:22716140-22716159 None:intergenic 20.0%
!!! AAAATATATCTTGACTTGTT+TGG + chr8_1:22716581-22716600 Msa1185520:intron 20.0%
!!! ATTTTTGGTTTTGTTCTTGA+AGG - chr8_1:22715833-22715852 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - chr8_1:22715984-22716003 None:intergenic 25.0%
! TTGATTTACTTTCATAATGG+TGG + chr8_1:22716082-22716101 Msa1185520:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - chr8_1:22716141-22716160 None:intergenic 25.0%
! AATTTCAAACATCTATAAGG+TGG - chr8_1:22716889-22716908 None:intergenic 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + chr8_1:22717048-22717067 Msa1185520:intron 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + chr8_1:22717188-22717207 Msa1185520:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + chr8_1:22717189-22717208 Msa1185520:CDS 25.0%
!! GAGTTTTTGTCATGATTAAT+TGG + chr8_1:22717402-22717421 Msa1185520:exon 25.0%
! CTGGATTATTAATGTAAGTT+TGG + chr8_1:22717460-22717479 Msa1185520:three_prime_UTR 25.0%
!!! GATAGTGAATTTTGATTTAG+CGG - chr8_1:22715776-22715795 None:intergenic 25.0%
!!! ATTTTTGGTTTTGTTCTTGA+AGG - chr8_1:22715833-22715852 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - chr8_1:22715984-22716003 None:intergenic 25.0%
! TTGATTTACTTTCATAATGG+TGG + chr8_1:22716082-22716101 Msa1185520:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - chr8_1:22716141-22716160 None:intergenic 25.0%
! AATTTCAAACATCTATAAGG+TGG - chr8_1:22716889-22716908 None:intergenic 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + chr8_1:22717048-22717067 Msa1185520:intron 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + chr8_1:22717188-22717207 Msa1185520:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + chr8_1:22717189-22717208 Msa1185520:CDS 25.0%
!! GAGTTTTTGTCATGATTAAT+TGG + chr8_1:22717402-22717421 Msa1185520:exon 25.0%
! CTGGATTATTAATGTAAGTT+TGG + chr8_1:22717460-22717479 Msa1185520:three_prime_UTR 25.0%
TTTGATCCATATAACCACTT+TGG + chr8_1:22715863-22715882 Msa1185520:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + chr8_1:22716011-22716030 Msa1185520:CDS 30.0%
TTTACTTTCATAATGGTGGT+TGG + chr8_1:22716086-22716105 Msa1185520:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + chr8_1:22716087-22716106 Msa1185520:CDS 30.0%
TGCAAACATTGTGTTCAATA+CGG + chr8_1:22716354-22716373 Msa1185520:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG - chr8_1:22716426-22716445 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + chr8_1:22716430-22716449 Msa1185520:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - chr8_1:22716470-22716489 None:intergenic 30.0%
GAGAATAACACATATCTCTT+TGG + chr8_1:22716551-22716570 Msa1185520:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - chr8_1:22716744-22716763 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - chr8_1:22716870-22716889 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + chr8_1:22716908-22716927 Msa1185520:intron 30.0%
TTGATTCAAAGAGATTAAGG+TGG - chr8_1:22716951-22716970 None:intergenic 30.0%
GTCTTGATTCAAAGAGATTA+AGG - chr8_1:22716954-22716973 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - chr8_1:22717185-22717204 None:intergenic 30.0%
AAAATGTCAAGAAATTAGGG+AGG + chr8_1:22717192-22717211 Msa1185520:CDS 30.0%
TGCGGTTATAAATATTGCAA+GGG + chr8_1:22717364-22717383 Msa1185520:CDS 30.0%
TCTTTGTATTTCTCTTAGTC+TGG + chr8_1:22717441-22717460 Msa1185520:three_prime_UTR 30.0%
TTTGATCCATATAACCACTT+TGG + chr8_1:22715863-22715882 Msa1185520:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + chr8_1:22716011-22716030 Msa1185520:CDS 30.0%
TTTACTTTCATAATGGTGGT+TGG + chr8_1:22716086-22716105 Msa1185520:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + chr8_1:22716087-22716106 Msa1185520:CDS 30.0%
TGCAAACATTGTGTTCAATA+CGG + chr8_1:22716354-22716373 Msa1185520:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG - chr8_1:22716426-22716445 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + chr8_1:22716430-22716449 Msa1185520:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - chr8_1:22716470-22716489 None:intergenic 30.0%
GAGAATAACACATATCTCTT+TGG + chr8_1:22716551-22716570 Msa1185520:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - chr8_1:22716744-22716763 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - chr8_1:22716870-22716889 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + chr8_1:22716908-22716927 Msa1185520:intron 30.0%
TTGATTCAAAGAGATTAAGG+TGG - chr8_1:22716951-22716970 None:intergenic 30.0%
GTCTTGATTCAAAGAGATTA+AGG - chr8_1:22716954-22716973 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - chr8_1:22717185-22717204 None:intergenic 30.0%
AAAATGTCAAGAAATTAGGG+AGG + chr8_1:22717192-22717211 Msa1185520:CDS 30.0%
TGCGGTTATAAATATTGCAA+GGG + chr8_1:22717364-22717383 Msa1185520:CDS 30.0%
TCTTTGTATTTCTCTTAGTC+TGG + chr8_1:22717441-22717460 Msa1185520:three_prime_UTR 30.0%
TTGTTCTTGAAGGATGATGA+TGG - chr8_1:22715823-22715842 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - chr8_1:22715872-22715891 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - chr8_1:22715880-22715899 None:intergenic 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - chr8_1:22716037-22716056 None:intergenic 35.0%
AATCAAATGACGAATCCTGA+TGG + chr8_1:22716268-22716287 Msa1185520:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - chr8_1:22716321-22716340 None:intergenic 35.0%
! AGGTGTTATCTTTATGGATG+TGG + chr8_1:22716325-22716344 Msa1185520:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG + chr8_1:22716331-22716350 Msa1185520:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - chr8_1:22716442-22716461 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + chr8_1:22716440-22716459 Msa1185520:CDS 35.0%
! ACAAGTTTTCTCGTGTCTTA+AGG + chr8_1:22716616-22716635 Msa1185520:intron 35.0%
! GTAAGTTCCTGCTATGATTT+TGG + chr8_1:22716692-22716711 Msa1185520:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + chr8_1:22716708-22716727 Msa1185520:intron 35.0%
GAGAAATCAAGAGACAAATG+AGG - chr8_1:22716787-22716806 None:intergenic 35.0%
TGTTGATCCAATGTTTGGTT+TGG - chr8_1:22716918-22716937 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - chr8_1:22716923-22716942 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + chr8_1:22717058-22717077 Msa1185520:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG + chr8_1:22717158-22717177 Msa1185520:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + chr8_1:22717259-22717278 Msa1185520:CDS 35.0%
GGTCAACCATATCAATATTG+TGG - chr8_1:22717331-22717350 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG + chr8_1:22717363-22717382 Msa1185520:CDS 35.0%
TTGTTCTTGAAGGATGATGA+TGG - chr8_1:22715823-22715842 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - chr8_1:22715872-22715891 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - chr8_1:22715880-22715899 None:intergenic 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - chr8_1:22716037-22716056 None:intergenic 35.0%
AATCAAATGACGAATCCTGA+TGG + chr8_1:22716268-22716287 Msa1185520:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - chr8_1:22716321-22716340 None:intergenic 35.0%
! AGGTGTTATCTTTATGGATG+TGG + chr8_1:22716325-22716344 Msa1185520:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG + chr8_1:22716331-22716350 Msa1185520:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - chr8_1:22716442-22716461 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + chr8_1:22716440-22716459 Msa1185520:CDS 35.0%
! ACAAGTTTTCTCGTGTCTTA+AGG + chr8_1:22716616-22716635 Msa1185520:intron 35.0%
! GTAAGTTCCTGCTATGATTT+TGG + chr8_1:22716692-22716711 Msa1185520:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + chr8_1:22716708-22716727 Msa1185520:intron 35.0%
GAGAAATCAAGAGACAAATG+AGG - chr8_1:22716787-22716806 None:intergenic 35.0%
TGTTGATCCAATGTTTGGTT+TGG - chr8_1:22716918-22716937 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - chr8_1:22716923-22716942 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + chr8_1:22717058-22717077 Msa1185520:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG + chr8_1:22717158-22717177 Msa1185520:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + chr8_1:22717259-22717278 Msa1185520:CDS 35.0%
GGTCAACCATATCAATATTG+TGG - chr8_1:22717331-22717350 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG + chr8_1:22717363-22717382 Msa1185520:CDS 35.0%
GGATTGAGTTTCAATCCTGA+CGG + chr8_1:22715884-22715903 Msa1185520:CDS 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + chr8_1:22716239-22716258 Msa1185520:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + chr8_1:22716240-22716259 Msa1185520:CDS 40.0%
CCATAAAGATAACACCTCGA+TGG - chr8_1:22716322-22716341 None:intergenic 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + chr8_1:22716319-22716338 Msa1185520:CDS 40.0%
ATATGGACTTAGAGCCTCTA+AGG + chr8_1:22716392-22716411 Msa1185520:CDS 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + chr8_1:22716400-22716419 Msa1185520:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + chr8_1:22716444-22716463 Msa1185520:CDS 40.0%
!! TCTTGACTTGTTTGGATGTG+CGG + chr8_1:22716589-22716608 Msa1185520:intron 40.0%
CATCAAGCCAAAATCATAGC+AGG - chr8_1:22716702-22716721 None:intergenic 40.0%
!!! GCTATGATTTTGGCTTGATG+TGG + chr8_1:22716702-22716721 Msa1185520:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG - chr8_1:22717095-22717114 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - chr8_1:22717154-22717173 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + chr8_1:22717151-22717170 Msa1185520:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - chr8_1:22717170-22717189 None:intergenic 40.0%
AATGGCAAAAGGACCACATT+TGG + chr8_1:22717169-22717188 Msa1185520:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + chr8_1:22717206-22717225 Msa1185520:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + chr8_1:22717207-22717226 Msa1185520:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + chr8_1:22717212-22717231 Msa1185520:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + chr8_1:22717215-22717234 Msa1185520:CDS 40.0%
TGACCATGTTGGTCAAATGT+GGG + chr8_1:22717270-22717289 Msa1185520:CDS 40.0%
GATCAAACCTAGCTTCAACT+TGG - chr8_1:22717298-22717317 None:intergenic 40.0%
GGGGTTCCACAATATTGATA+TGG + chr8_1:22717322-22717341 Msa1185520:CDS 40.0%
AGCGTAGGTTACTTAAGCAT+GGG + chr8_1:22717486-22717505 Msa1185520:three_prime_UTR 40.0%
GGATTGAGTTTCAATCCTGA+CGG + chr8_1:22715884-22715903 Msa1185520:CDS 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + chr8_1:22716239-22716258 Msa1185520:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + chr8_1:22716240-22716259 Msa1185520:CDS 40.0%
CCATAAAGATAACACCTCGA+TGG - chr8_1:22716322-22716341 None:intergenic 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + chr8_1:22716319-22716338 Msa1185520:CDS 40.0%
ATATGGACTTAGAGCCTCTA+AGG + chr8_1:22716392-22716411 Msa1185520:CDS 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + chr8_1:22716400-22716419 Msa1185520:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + chr8_1:22716444-22716463 Msa1185520:CDS 40.0%
!! TCTTGACTTGTTTGGATGTG+CGG + chr8_1:22716589-22716608 Msa1185520:intron 40.0%
CATCAAGCCAAAATCATAGC+AGG - chr8_1:22716702-22716721 None:intergenic 40.0%
!!! GCTATGATTTTGGCTTGATG+TGG + chr8_1:22716702-22716721 Msa1185520:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG - chr8_1:22717095-22717114 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - chr8_1:22717154-22717173 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + chr8_1:22717151-22717170 Msa1185520:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - chr8_1:22717170-22717189 None:intergenic 40.0%
AATGGCAAAAGGACCACATT+TGG + chr8_1:22717169-22717188 Msa1185520:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + chr8_1:22717206-22717225 Msa1185520:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + chr8_1:22717207-22717226 Msa1185520:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + chr8_1:22717212-22717231 Msa1185520:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + chr8_1:22717215-22717234 Msa1185520:CDS 40.0%
TGACCATGTTGGTCAAATGT+GGG + chr8_1:22717270-22717289 Msa1185520:CDS 40.0%
GATCAAACCTAGCTTCAACT+TGG - chr8_1:22717298-22717317 None:intergenic 40.0%
GGGGTTCCACAATATTGATA+TGG + chr8_1:22717322-22717341 Msa1185520:CDS 40.0%
AGCGTAGGTTACTTAAGCAT+GGG + chr8_1:22717486-22717505 Msa1185520:three_prime_UTR 40.0%
ACCATCAAACGACAATACCG+TGG + chr8_1:22716045-22716064 Msa1185520:CDS 45.0%
GCGACAGAGACAACAATACT+AGG - chr8_1:22716175-22716194 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+AGG - chr8_1:22716226-22716245 None:intergenic 45.0%
GAGCAATGGTTGAGAGACTA+TGG + chr8_1:22716292-22716311 Msa1185520:CDS 45.0%
TTCAATACGGCCATGCAGAT+TGG + chr8_1:22716367-22716386 Msa1185520:CDS 45.0%
GTCCATATCTCCAATCTGCA+TGG - chr8_1:22716380-22716399 None:intergenic 45.0%
ACAAGGCCACTAATCCTTAG+AGG - chr8_1:22716409-22716428 None:intergenic 45.0%
CATCATGTCCAACACTGGTA+AGG - chr8_1:22717096-22717115 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG + chr8_1:22717096-22717115 Msa1185520:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + chr8_1:22717097-22717116 Msa1185520:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + chr8_1:22717269-22717288 Msa1185520:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + chr8_1:22717271-22717290 Msa1185520:CDS 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + chr8_1:22717301-22717320 Msa1185520:CDS 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + chr8_1:22717302-22717321 Msa1185520:CDS 45.0%
AAGCTAGGTTTGATCCTGTG+GGG + chr8_1:22717303-22717322 Msa1185520:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG - chr8_1:22717320-22717339 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - chr8_1:22717352-22717371 None:intergenic 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - chr8_1:22717353-22717372 None:intergenic 45.0%
!! ATGTAAGTTTGGTGCAGCGT+AGG + chr8_1:22717471-22717490 Msa1185520:three_prime_UTR 45.0%
CAGCGTAGGTTACTTAAGCA+TGG + chr8_1:22717485-22717504 Msa1185520:three_prime_UTR 45.0%
GCGTAGGTTACTTAAGCATG+GGG + chr8_1:22717487-22717506 Msa1185520:three_prime_UTR 45.0%
ACCATCAAACGACAATACCG+TGG + chr8_1:22716045-22716064 Msa1185520:CDS 45.0%
GCGACAGAGACAACAATACT+AGG - chr8_1:22716175-22716194 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+AGG - chr8_1:22716226-22716245 None:intergenic 45.0%
GAGCAATGGTTGAGAGACTA+TGG + chr8_1:22716292-22716311 Msa1185520:CDS 45.0%
TTCAATACGGCCATGCAGAT+TGG + chr8_1:22716367-22716386 Msa1185520:CDS 45.0%
GTCCATATCTCCAATCTGCA+TGG - chr8_1:22716380-22716399 None:intergenic 45.0%
ACAAGGCCACTAATCCTTAG+AGG - chr8_1:22716409-22716428 None:intergenic 45.0%
CATCATGTCCAACACTGGTA+AGG - chr8_1:22717096-22717115 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG + chr8_1:22717096-22717115 Msa1185520:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + chr8_1:22717097-22717116 Msa1185520:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + chr8_1:22717269-22717288 Msa1185520:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + chr8_1:22717271-22717290 Msa1185520:CDS 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + chr8_1:22717301-22717320 Msa1185520:CDS 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + chr8_1:22717302-22717321 Msa1185520:CDS 45.0%
AAGCTAGGTTTGATCCTGTG+GGG + chr8_1:22717303-22717322 Msa1185520:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG - chr8_1:22717320-22717339 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - chr8_1:22717352-22717371 None:intergenic 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - chr8_1:22717353-22717372 None:intergenic 45.0%
!! ATGTAAGTTTGGTGCAGCGT+AGG + chr8_1:22717471-22717490 Msa1185520:three_prime_UTR 45.0%
CAGCGTAGGTTACTTAAGCA+TGG + chr8_1:22717485-22717504 Msa1185520:three_prime_UTR 45.0%
GCGTAGGTTACTTAAGCATG+GGG + chr8_1:22717487-22717506 Msa1185520:three_prime_UTR 45.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - chr8_1:22715919-22715938 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - chr8_1:22716049-22716068 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - chr8_1:22716065-22716084 None:intergenic 50.0%
TTATGGGTACCAGCATCAGC+CGG - chr8_1:22716124-22716143 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + chr8_1:22716182-22716201 Msa1185520:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + chr8_1:22716183-22716202 Msa1185520:CDS 50.0%
TGTCCAGGTAACCTAGTCTC+TGG - chr8_1:22716211-22716230 None:intergenic 50.0%
CGAATCCTGATGGAGAGCAA+TGG + chr8_1:22716278-22716297 Msa1185520:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - chr8_1:22716286-22716305 None:intergenic 50.0%
GGCCATGCAGATTGGAGATA+TGG + chr8_1:22716375-22716394 Msa1185520:CDS 50.0%
AAAGGACGGCCTCGGAAATA+AGG + chr8_1:22716458-22716477 Msa1185520:CDS 50.0%
!! TGACTTGTTTGGATGTGCGG+TGG + chr8_1:22716592-22716611 Msa1185520:intron 50.0%
GGCACTGCACAACCAAACAT+AGG + chr8_1:22716729-22716748 Msa1185520:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - chr8_1:22717066-22717085 None:intergenic 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - chr8_1:22717085-22717104 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + chr8_1:22717085-22717104 Msa1185520:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG + chr8_1:22717226-22717245 Msa1185520:CDS 50.0%
GACCCCACATTTGACCAACA+TGG - chr8_1:22717276-22717295 None:intergenic 50.0%
TGACCCTACTAGAGCTAGTG+CGG + chr8_1:22717346-22717365 Msa1185520:CDS 50.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - chr8_1:22715919-22715938 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - chr8_1:22716049-22716068 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - chr8_1:22716065-22716084 None:intergenic 50.0%
TTATGGGTACCAGCATCAGC+CGG - chr8_1:22716124-22716143 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + chr8_1:22716182-22716201 Msa1185520:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + chr8_1:22716183-22716202 Msa1185520:CDS 50.0%
TGTCCAGGTAACCTAGTCTC+TGG - chr8_1:22716211-22716230 None:intergenic 50.0%
CGAATCCTGATGGAGAGCAA+TGG + chr8_1:22716278-22716297 Msa1185520:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - chr8_1:22716286-22716305 None:intergenic 50.0%
GGCCATGCAGATTGGAGATA+TGG + chr8_1:22716375-22716394 Msa1185520:CDS 50.0%
AAAGGACGGCCTCGGAAATA+AGG + chr8_1:22716458-22716477 Msa1185520:CDS 50.0%
!! TGACTTGTTTGGATGTGCGG+TGG + chr8_1:22716592-22716611 Msa1185520:intron 50.0%
GGCACTGCACAACCAAACAT+AGG + chr8_1:22716729-22716748 Msa1185520:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - chr8_1:22717066-22717085 None:intergenic 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - chr8_1:22717085-22717104 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + chr8_1:22717085-22717104 Msa1185520:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG + chr8_1:22717226-22717245 Msa1185520:CDS 50.0%
GACCCCACATTTGACCAACA+TGG - chr8_1:22717276-22717295 None:intergenic 50.0%
TGACCCTACTAGAGCTAGTG+CGG + chr8_1:22717346-22717365 Msa1185520:CDS 50.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - chr8_1:22715924-22715943 None:intergenic 55.0%
AGAAACCCCCGGTGAAGGTT+CGG - chr8_1:22715954-22715973 None:intergenic 55.0%
ACCTTCACCGGGGGTTTCTA+CGG + chr8_1:22715955-22715974 Msa1185520:CDS 55.0%
TTGGACACCGTAGAAACCCC+CGG - chr8_1:22715965-22715984 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + chr8_1:22716102-22716121 Msa1185520:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - chr8_1:22716123-22716142 None:intergenic 55.0%
GAGACTATGGTGACCCATCG+AGG + chr8_1:22716305-22716324 Msa1185520:CDS 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + chr8_1:22716450-22716469 Msa1185520:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - chr8_1:22717101-22717120 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + chr8_1:22717103-22717122 Msa1185520:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - chr8_1:22717134-22717153 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + chr8_1:22717135-22717154 Msa1185520:CDS 55.0%
! GTGGGGTCCAAGTTGAAGCT+AGG + chr8_1:22717288-22717307 Msa1185520:CDS 55.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - chr8_1:22715924-22715943 None:intergenic 55.0%
AGAAACCCCCGGTGAAGGTT+CGG - chr8_1:22715954-22715973 None:intergenic 55.0%
ACCTTCACCGGGGGTTTCTA+CGG + chr8_1:22715955-22715974 Msa1185520:CDS 55.0%
TTGGACACCGTAGAAACCCC+CGG - chr8_1:22715965-22715984 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + chr8_1:22716102-22716121 Msa1185520:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - chr8_1:22716123-22716142 None:intergenic 55.0%
GAGACTATGGTGACCCATCG+AGG + chr8_1:22716305-22716324 Msa1185520:CDS 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + chr8_1:22716450-22716469 Msa1185520:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - chr8_1:22717101-22717120 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + chr8_1:22717103-22717122 Msa1185520:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - chr8_1:22717134-22717153 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + chr8_1:22717135-22717154 Msa1185520:CDS 55.0%
! GTGGGGTCCAAGTTGAAGCT+AGG + chr8_1:22717288-22717307 Msa1185520:CDS 55.0%
! AGGGTGTCTTGTAGGCACGG+TGG - chr8_1:22715916-22715935 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - chr8_1:22715942-22715961 None:intergenic 60.0%
AAACCCCCGGTGAAGGTTCG+GGG - chr8_1:22715952-22715971 None:intergenic 60.0%
GAAACCCCCGGTGAAGGTTC+GGG - chr8_1:22715953-22715972 None:intergenic 60.0%
ACCGTAGAAACCCCCGGTGA+AGG - chr8_1:22715959-22715978 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + chr8_1:22716112-22716131 Msa1185520:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - chr8_1:22716117-22716136 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - chr8_1:22716197-22716216 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + chr8_1:22716197-22716216 Msa1185520:CDS 60.0%
GCGCCAGAGACTAGGTTACC+TGG + chr8_1:22716205-22716224 Msa1185520:CDS 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + chr8_1:22717115-22717134 Msa1185520:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + chr8_1:22717116-22717135 Msa1185520:CDS 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - chr8_1:22717123-22717142 None:intergenic 60.0%
! AGGGTGTCTTGTAGGCACGG+TGG - chr8_1:22715916-22715935 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - chr8_1:22715942-22715961 None:intergenic 60.0%
AAACCCCCGGTGAAGGTTCG+GGG - chr8_1:22715952-22715971 None:intergenic 60.0%
GAAACCCCCGGTGAAGGTTC+GGG - chr8_1:22715953-22715972 None:intergenic 60.0%
ACCGTAGAAACCCCCGGTGA+AGG - chr8_1:22715959-22715978 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + chr8_1:22716112-22716131 Msa1185520:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - chr8_1:22716117-22716136 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - chr8_1:22716197-22716216 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + chr8_1:22716197-22716216 Msa1185520:CDS 60.0%
GCGCCAGAGACTAGGTTACC+TGG + chr8_1:22716205-22716224 Msa1185520:CDS 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + chr8_1:22717115-22717134 Msa1185520:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + chr8_1:22717116-22717135 Msa1185520:CDS 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - chr8_1:22717123-22717142 None:intergenic 60.0%
GCACGGTGGAGAGTTCCGTC+AGG - chr8_1:22715902-22715921 None:intergenic 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - chr8_1:22715935-22715954 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - chr8_1:22715936-22715955 None:intergenic 65.0%
CGCGAACCCCGAACCTTCAC+CGG + chr8_1:22715943-22715962 Msa1185520:CDS 65.0%
GCGAACCCCGAACCTTCACC+GGG + chr8_1:22715944-22715963 Msa1185520:CDS 65.0%
CGAACCCCGAACCTTCACCG+GGG + chr8_1:22715945-22715964 Msa1185520:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + chr8_1:22715946-22715965 Msa1185520:CDS 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + chr8_1:22717117-22717136 Msa1185520:CDS 65.0%
GCACGGTGGAGAGTTCCGTC+AGG - chr8_1:22715902-22715921 None:intergenic 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - chr8_1:22715935-22715954 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - chr8_1:22715936-22715955 None:intergenic 65.0%
CGCGAACCCCGAACCTTCAC+CGG + chr8_1:22715943-22715962 Msa1185520:CDS 65.0%
GCGAACCCCGAACCTTCACC+GGG + chr8_1:22715944-22715963 Msa1185520:CDS 65.0%
CGAACCCCGAACCTTCACCG+GGG + chr8_1:22715945-22715964 Msa1185520:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + chr8_1:22715946-22715965 Msa1185520:CDS 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + chr8_1:22717117-22717136 Msa1185520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 22715774 22717540 22715774 ID=Msa1185520;Name=Msa1185520
chr8_1 mRNA 22715774 22717540 22715774 ID=Msa1185520-mRNA-1;Parent=Msa1185520;Name=Msa1185520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=80|1|1|1|1|1|2|137|319
chr8_1 exon 22715774 22716479 22715774 ID=Msa1185520-mRNA-1:exon:8358;Parent=Msa1185520-mRNA-1
chr8_1 exon 22717070 22717540 22717070 ID=Msa1185520-mRNA-1:exon:8359;Parent=Msa1185520-mRNA-1
chr8_1 five_prime_UTR 22715774 22715853 22715774 ID=Msa1185520-mRNA-1:five_prime_utr;Parent=Msa1185520-mRNA-1
chr8_1 CDS 22715854 22716479 22715854 ID=Msa1185520-mRNA-1:cds;Parent=Msa1185520-mRNA-1
chr8_1 CDS 22717070 22717403 22717070 ID=Msa1185520-mRNA-1:cds;Parent=Msa1185520-mRNA-1
chr8_1 three_prime_UTR 22717404 22717540 22717404 ID=Msa1185520-mRNA-1:three_prime_utr;Parent=Msa1185520-mRNA-1
Gene Sequence

>Msa1185520

ATGTCAAAATTTGATCCATATAACCACTTTGGATTGAGTTTCAATCCTGACGGAACTCTCCACCGTGCCTACAAGACACCCTCAACCGACGCGAACCCCGAACCTTCACCGGGGGTTTCTACGGTGTCCAAAGACATAACAATTGATGATGAGAAAAAAATATGGGTTCGAATTTTCAGGCCAACAAAACTACCATCAAACGACAATACCGTGGCGCGTTTACCGATATTGATTTACTTTCATAATGGTGGTTGGGTCATCCTAAGCCCGGCTGATGCTGGTACCCATAAAAAATGTTCGAATCTTGCTTCTGACATTCCTAGTATTGTTGTCTCTGTCGCCTTTCGTTGGGCGCCAGAGACTAGGTTACCTGGACAATATCAAGATGCTCGAGATGCTATTTTGTGGGTGAAAAATCAAATGACGAATCCTGATGGAGAGCAATGGTTGAGAGACTATGGTGACCCATCGAGGTGTTATCTTTATGGATGTGGTTGTGGTGCAAACATTGTGTTCAATACGGCCATGCAGATTGGAGATATGGACTTAGAGCCTCTAAGGATTAGTGGCCTTGTTATGAATCAACCTATGTTTTCTGGAGAGAAAAGGACGGCCTCGGAAATAAGGTTTGCAACGGACCAGACTTTGCCCTTACCAGTGTTGGACATGATGTGGGCCATGGCTTTGCCTACGGGGACAAATCGTGACCATAGGTATTGCAATCCAATGGCAAAAGGACCACATTTGGAAAATGTCAAGAAATTAGGGAGGTGTCTTGTTATTGGGTATGGTGGAGACATCATGGTTGATCGACAACAAGAATTTGTGACCATGTTGGTCAAATGTGGGGTCCAAGTTGAAGCTAGGTTTGATCCTGTGGGGTTCCACAATATTGATATGGTTGACCCTACTAGAGCTAGTGCGGTTATAAATATTGCAAGGGAGTTTATTATACTTTGA
Protein sequence

>Msa1185520

MSKFDPYNHFGLSFNPDGTLHRAYKTPSTDANPEPSPGVSTVSKDITIDDEKKIWVRIFRPTKLPSNDNTVARLPILIYFHNGGWVILSPADAGTHKKCSNLASDIPSIVVSVAFRWAPETRLPGQYQDARDAILWVKNQMTNPDGEQWLRDYGDPSRCYLYGCGCGANIVFNTAMQIGDMDLEPLRISGLVMNQPMFSGEKRTASEIRFATDQTLPLPVLDMMWAMALPTGTNRDHRYCNPMAKGPHLENVKKLGRCLVIGYGGDIMVDRQQEFVTMLVKCGVQVEARFDPVGFHNIDMVDPTRASAVINIAREFIIL*