AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1280840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1280840 MtrunA17_Chr8g0351171 96.238 319 12 0 1 319 1 319 0.0 650
Msa1280840 MtrunA17_Chr8g0351211 40.881 318 182 4 5 318 2 317 2.69e-90 272
Msa1280840 MtrunA17_Chr8g0351201 42.138 318 178 4 2 317 11 324 5.39e-90 271
Msa1280840 MtrunA17_Chr6g0474411 39.498 319 179 5 5 317 16 326 4.16e-83 254
Msa1280840 MtrunA17_Chr6g0474491 36.250 320 190 5 5 317 12 324 3.01e-73 229
Msa1280840 MtrunA17_Chr6g0474471 35.312 320 193 6 5 317 13 325 5.61e-72 226
Msa1280840 MtrunA17_Chr1g0204211 37.975 316 181 5 2 312 28 333 2.16e-71 224
Msa1280840 MtrunA17_Chr1g0204201 37.037 324 187 6 4 318 11 326 2.36e-71 224
Msa1280840 MtrunA17_Chr6g0474541 37.742 310 181 6 5 310 41 342 2.19e-69 220
Msa1280840 MtrunA17_Chr6g0474631 35.577 312 181 9 15 317 24 324 9.10e-64 204
Msa1280840 MtrunA17_Chr7g0214851 32.407 324 198 8 12 317 29 349 1.39e-52 176
Msa1280840 MtrunA17_Chr1g0210121 31.818 308 188 10 12 309 34 329 6.89e-45 156
Msa1280840 MtrunA17_Chr6g0477231 32.414 290 176 5 10 287 23 304 4.25e-44 154
Msa1280840 MtrunA17_Chr6g0477161 35.206 267 154 6 29 287 48 303 6.14e-44 159
Msa1280840 MtrunA17_Chr6g0477161 33.333 282 167 7 17 287 381 652 4.55e-41 151
Msa1280840 MtrunA17_Chr7g0268091 31.447 318 192 11 12 318 15 317 2.45e-41 146
Msa1280840 MtrunA17_Chr6g0477251 30.696 316 198 7 13 317 582 887 1.58e-39 147
Msa1280840 MtrunA17_Chr6g0477251 30.063 316 200 7 13 317 28 333 2.44e-39 147
Msa1280840 MtrunA17_Chr6g0477271 33.213 277 168 7 17 287 55 320 1.28e-38 140
Msa1280840 MtrunA17_Chr4g0025291 28.214 280 189 5 44 317 42 315 3.10e-36 132
Msa1280840 MtrunA17_Chr4g0045181 31.621 253 163 4 33 283 35 279 3.73e-35 130
Msa1280840 MtrunA17_Chr1g0191301 31.613 310 178 10 8 296 25 321 7.69e-34 127
Msa1280840 MtrunA17_Chr3g0081521 30.627 271 174 5 57 317 74 340 5.35e-33 124
Msa1280840 MtrunA17_Chr6g0474611 36.471 170 98 4 157 317 2 170 7.06e-33 119
Msa1280840 MtrunA17_Chr7g0235741 31.557 244 155 5 43 283 77 311 7.87e-32 121
Msa1280840 MtrunA17_Chr4g0045131 30.717 293 182 8 33 317 75 354 1.06e-31 121
Msa1280840 MtrunA17_Chr3g0133701 29.893 281 169 9 12 283 15 276 3.52e-31 119
Msa1280840 MtrunA17_Chr7g0259161 28.981 314 187 10 8 296 25 327 4.28e-31 119
Msa1280840 MtrunA17_Chr6g0477241 31.651 218 131 5 17 225 43 251 4.34e-31 118
Msa1280840 MtrunA17_Chr4g0045121 31.621 253 160 5 33 283 38 279 2.27e-30 117
Msa1280840 MtrunA17_Chr1g0196311 31.164 292 166 10 8 279 41 317 3.55e-30 117
Msa1280840 MtrunA17_Chr5g0394251 29.537 281 184 9 17 290 26 299 3.36e-29 114
Msa1280840 MtrunA17_Chr4g0045191 28.383 303 178 8 17 314 31 299 4.45e-28 110
Msa1280840 MtrunA17_Chr1g0149271 34.199 231 128 7 17 241 16 228 2.54e-27 108
Msa1280840 MtrunA17_Chr1g0205871 31.475 305 179 12 17 301 21 315 5.64e-26 105
Msa1280840 MtrunA17_Chr5g0394241 29.545 264 168 8 17 271 22 276 2.73e-25 103
Msa1280840 MtrunA17_Chr5g0394211 33.058 242 136 10 17 246 56 283 1.88e-24 101
Msa1280840 MtrunA17_Chr8g0353951 29.545 308 194 11 17 314 29 323 3.95e-24 100
Msa1280840 MtrunA17_Chr6g0458881 28.906 256 145 7 64 284 147 400 7.19e-24 101
Msa1280840 MtrunA17_Chr3g0095711 31.579 266 158 10 17 271 66 318 7.78e-24 100
Msa1280840 MtrunA17_Chr7g0228721 29.730 222 115 5 65 246 156 376 1.11e-23 100
Msa1280840 MtrunA17_Chr7g0233871 30.769 273 173 11 17 283 25 287 5.47e-21 91.7
Msa1280840 MtrunA17_Chr1g0205781 30.403 273 171 11 17 283 25 284 5.59e-20 89.0
Msa1280840 MtrunA17_Chr1g0205791 30.081 246 154 8 43 283 46 278 3.94e-17 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1280840 AT2G45610.1 52.698 315 148 1 4 317 9 323 1.16e-123 357
Msa1280840 AT2G45600.1 40.123 324 166 8 5 317 9 315 1.88e-81 250
Msa1280840 AT5G62180.1 35.404 322 194 6 5 318 9 324 1.78e-68 217
Msa1280840 AT1G68620.1 32.567 261 163 6 17 275 36 285 4.75e-38 138
Msa1280840 AT5G16080.1 30.142 282 182 8 32 307 54 326 9.79e-34 127
Msa1280840 AT5G23530.1 29.965 287 179 8 16 296 34 304 1.60e-33 126
Msa1280840 AT5G06570.1 33.080 263 162 8 40 297 46 299 9.67e-33 124
Msa1280840 AT5G06570.2 33.080 263 162 8 40 297 46 299 9.67e-33 124
Msa1280840 AT5G06570.3 33.080 263 162 8 40 297 61 314 1.22e-32 124
Msa1280840 AT5G06570.4 33.080 263 162 8 40 297 61 314 1.22e-32 124
Msa1280840 AT5G27320.1 29.032 310 185 10 8 296 25 320 9.55e-31 119
Msa1280840 AT3G63010.1 29.470 302 176 10 16 296 37 322 9.40e-30 116
Msa1280840 AT3G05120.1 29.470 302 175 10 8 287 25 310 2.90e-28 112
Msa1280840 AT1G19190.1 28.947 266 166 7 26 283 25 275 2.87e-27 108
Msa1280840 AT1G47480.1 28.676 272 174 7 12 281 16 269 3.68e-26 105
Msa1280840 AT5G14310.1 29.688 256 143 5 65 284 142 396 7.60e-26 107
Msa1280840 AT3G48690.1 28.929 280 181 7 12 283 13 282 1.30e-25 104
Msa1280840 AT2G03550.1 27.891 294 196 6 29 317 28 310 2.43e-24 100
Msa1280840 AT3G27320.2 29.658 263 147 7 58 284 118 378 3.24e-24 102
Msa1280840 AT3G27320.1 29.658 263 147 7 58 284 150 410 4.84e-24 102
Msa1280840 AT1G49640.1 31.868 182 117 3 22 202 21 196 1.50e-23 99.0
Msa1280840 AT1G49650.1 32.979 188 116 4 17 201 74 254 7.16e-23 97.8
Msa1280840 AT1G49660.1 27.407 270 183 6 17 282 18 278 1.07e-22 96.7
Msa1280840 AT3G48700.1 27.941 204 138 4 33 230 32 232 2.63e-21 92.8

Find 112 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAAATGTCAAGAAATT+AGG 0.125161 8_3:+19764985 Msa1280840:CDS
CCATCGAGGTGTTATCTTTA+TGG 0.162050 8_3:+19764125 Msa1280840:CDS
ATCATCAATTGTTATGTCTT+TGG 0.205110 8_3:-19763787 None:intergenic
CTCAATCCAAAGTGGTTATA+TGG 0.248180 8_3:-19763675 None:intergenic
TTAGGGAGGTGTCTTGTTAT+TGG 0.287339 8_3:+19765003 Msa1280840:CDS
TTCGGGGTTCGCGTCGGTTG+AGG 0.309991 8_3:-19763739 None:intergenic
TGGAAAATGTCAAGAAATTA+GGG 0.314810 8_3:+19764986 Msa1280840:CDS
CTGGATTATTAATGTAAGTT+TGG 0.326120 8_3:+19765257 Msa1280840:three_prime_UTR
AAAGGACGGCCTCGGAAATA+AGG 0.329749 8_3:+19764264 Msa1280840:CDS
TAGGGAGGTGTCTTGTTATT+GGG 0.337672 8_3:+19765004 Msa1280840:CDS
TCTTTGTATTTCTCTTAGTC+TGG 0.345016 8_3:+19765238 Msa1280840:three_prime_UTR
AATGGCAAAAGGACCACATT+TGG 0.377354 8_3:+19764966 Msa1280840:CDS
GTCGGTTGAGGGTGTCTTGT+AGG 0.384926 8_3:-19763727 None:intergenic
CGCGAACCCCGAACCTTCAC+CGG 0.388207 8_3:+19763749 Msa1280840:CDS
ATATTGATTTACTTTCATAA+TGG 0.392883 8_3:+19763885 Msa1280840:CDS
ATATGGACTTAGAGCCTCTA+AGG 0.394329 8_3:+19764198 Msa1280840:CDS
TCGGGGTTCGCGTCGGTTGA+GGG 0.394609 8_3:-19763738 None:intergenic
GGCCATTCAGATTGGAGATA+TGG 0.409202 8_3:+19764181 Msa1280840:CDS
TGGGCCATGGCTTTGCCTAC+GGG 0.409884 8_3:+19764913 Msa1280840:CDS
ACAAGGCCACTAATCCTTAG+AGG 0.416771 8_3:-19764212 None:intergenic
GACTTTGCCCTTACCAGTGT+TGG 0.417668 8_3:+19764882 Msa1280840:CDS
TTCAATACGGCCATTCAGAT+TGG 0.423842 8_3:+19764173 Msa1280840:CDS
TTACTTTCATAATGGTGGTT+GGG 0.428229 8_3:+19763893 Msa1280840:CDS
GTGGGCCATGGCTTTGCCTA+CGG 0.428532 8_3:+19764912 Msa1280840:CDS
ATAACCGCACTAGCTCTAGT+AGG 0.431582 8_3:-19765147 None:intergenic
TTTACTTTCATAATGGTGGT+TGG 0.431824 8_3:+19763892 Msa1280840:CDS
TTTGATCCATATAACCACTT+TGG 0.433703 8_3:+19763669 Msa1280840:CDS
AGGTGTCTTGTTATTGGGTA+TGG 0.434253 8_3:+19765009 Msa1280840:CDS
TATCTTTATGGATGTGGTTG+TGG 0.434607 8_3:+19764137 Msa1280840:CDS
TGTCTCTGTCGCCTTTCGTT+GGG 0.438448 8_3:+19763989 Msa1280840:CDS
CTCAACCATTGCTCTCCATC+AGG 0.438600 8_3:-19764089 None:intergenic
TTATGAAAGTAAATCAATAT+CGG 0.442305 8_3:-19763882 None:intergenic
TCGAGCATCTTGATATTGTC+CGG 0.444661 8_3:-19764030 None:intergenic
ATCCTAAGCCCGGCTGATGC+TGG 0.450512 8_3:+19763918 Msa1280840:CDS
TTGTCTCTGTCGCCTTTCGT+TGG 0.451494 8_3:+19763988 Msa1280840:CDS
CCATTGGATTGCAATACCTA+TGG 0.454707 8_3:-19764948 None:intergenic
TGAAGCTAGGTTTGATCCTG+TGG 0.468258 8_3:+19765098 Msa1280840:CDS
TTAGAGCCTCTAAGGATTAG+TGG 0.468499 8_3:+19764206 Msa1280840:CDS
GCCACGGTATTGTCGTTTGA+TGG 0.470251 8_3:-19763852 None:intergenic
TTATGGGTACCAGCATCAGC+CGG 0.476238 8_3:-19763927 None:intergenic
GGGGTTCCACAATATTGATA+TGG 0.477353 8_3:+19765119 Msa1280840:CDS
TACCAGCATCAGCCGGGCTT+AGG 0.478525 8_3:-19763920 None:intergenic
GCGACAGAGACAACAATACT+AGG 0.481339 8_3:-19763978 None:intergenic
GAGCAATGGTTGAGAGACTA+TGG 0.482302 8_3:+19764098 Msa1280840:CDS
GCGAACCCCGAACCTTCACC+GGG 0.488799 8_3:+19763750 Msa1280840:CDS
CATCATGTCCAACACTGGTA+AGG 0.489057 8_3:-19764890 None:intergenic
AGGTGTTATCTTTATGGATG+TGG 0.490354 8_3:+19764131 Msa1280840:CDS
GTTGGTCAAATGTGGGGTCC+AGG 0.492083 8_3:+19765074 Msa1280840:CDS
TGGAGAGAAAAGGACGGCCT+CGG 0.492416 8_3:+19764256 Msa1280840:CDS
GAAGCTAGGTTTGATCCTGT+GGG 0.500369 8_3:+19765099 Msa1280840:CDS
CAGCGTAGGTTACTTAAGCA+TGG 0.502232 8_3:+19765282 Msa1280840:three_prime_UTR
TTCGTTGGGCGCCAGAGACT+AGG 0.511728 8_3:+19764003 Msa1280840:CDS
TTGATTTACTTTCATAATGG+TGG 0.512216 8_3:+19763888 Msa1280840:CDS
TGTCTTGTTATTGGGTATGG+TGG 0.512697 8_3:+19765012 Msa1280840:CDS
TGACCATGTTGGTCAAATGT+GGG 0.525547 8_3:+19765067 Msa1280840:CDS
AATTATGAACCTTATTTCCG+AGG 0.528856 8_3:-19764273 None:intergenic
TATTGCAATCCAATGGCAAA+AGG 0.529808 8_3:+19764955 Msa1280840:CDS
ACACTGGTAAGGGCAAAGTC+TGG 0.531768 8_3:-19764879 None:intergenic
GTGACCATGTTGGTCAAATG+TGG 0.535257 8_3:+19765066 Msa1280840:CDS
TTCTTCCAAAAGGTTTGCAA+CGG 0.535946 8_3:+19764855 Msa1280840:intron
TATGGGTACCAGCATCAGCC+GGG 0.538444 8_3:-19763926 None:intergenic
AATCAAATGACGAATCCTGA+TGG 0.539467 8_3:+19764074 Msa1280840:CDS
GTCCATATCTCCAATCTGAA+TGG 0.540037 8_3:-19764183 None:intergenic
TTGTTCTTGAAGGATGATGA+TGG 0.545002 8_3:-19763626 None:intergenic
TGTCCGGGTAACCTAGTCTC+TGG 0.551902 8_3:-19764014 None:intergenic
TTGAGGGTGTCTTGTAGGCA+CGG 0.553474 8_3:-19763722 None:intergenic
TACCAGTGTTGGACATGATG+TGG 0.554021 8_3:+19764893 Msa1280840:CDS
TGGGTATGGTGGAGACATCA+TGG 0.554451 8_3:+19765023 Msa1280840:CDS
GTTGGACATGATGTGGGCCA+TGG 0.554890 8_3:+19764900 Msa1280840:CDS
GGTCAACCATATCAATATTG+TGG 0.557103 8_3:-19765125 None:intergenic
GTGGGGTCCAGGTTGAAGCT+AGG 0.557168 8_3:+19765085 Msa1280840:CDS
CATAAAGATAACACCTCGAT+GGG 0.558427 8_3:-19764124 None:intergenic
TGCAAACATTGTGTTCAATA+CGG 0.560159 8_3:+19764160 Msa1280840:CDS
GTGCGGTTATAAATATTGCA+AGG 0.561146 8_3:+19765160 Msa1280840:CDS
AGCGTAGGTTACTTAAGCAT+GGG 0.562348 8_3:+19765283 Msa1280840:three_prime_UTR
ATGTAAGTTTGGTGCAGCGT+AGG 0.563718 8_3:+19765268 Msa1280840:three_prime_UTR
GGATTGAGTTTCAATCCTGA+CGG 0.564876 8_3:+19763690 Msa1280840:CDS
TGAAGGTTCGGGGTTCGCGT+CGG 0.566328 8_3:-19763745 None:intergenic
AGTCTCTGGCGCCCAACGAA+AGG 0.566700 8_3:-19764000 None:intergenic
CGAGCATCTTGATATTGTCC+GGG 0.569073 8_3:-19764029 None:intergenic
GCACGGTGGAGAGTTCCGTC+AGG 0.576931 8_3:-19763705 None:intergenic
TAACCGCACTAGCTCTAGTA+GGG 0.577127 8_3:-19765146 None:intergenic
TGGTTGGGTCATCCTAAGCC+CGG 0.577877 8_3:+19763908 Msa1280840:CDS
ATCATGTCCAACACTGGTAA+GGG 0.578520 8_3:-19764889 None:intergenic
TCAATATTGTGGAACCCCAC+AGG 0.582193 8_3:-19765114 None:intergenic
CCATAAAGATAACACCTCGA+TGG 0.586600 8_3:-19764125 None:intergenic
GCCCACATCATGTCCAACAC+TGG 0.603571 8_3:-19764895 None:intergenic
GCGCCAGAGACTAGGTTACC+CGG 0.604483 8_3:+19764011 Msa1280840:CDS
TGCGGTTATAAATATTGCAA+GGG 0.608893 8_3:+19765161 Msa1280840:CDS
GGGCCATGGCTTTGCCTACG+GGG 0.610243 8_3:+19764914 Msa1280840:CDS
CGGGGACAAATCGTGACCAT+AGG 0.613124 8_3:+19764932 Msa1280840:CDS
AAGCTAGGTTTGATCCTGTG+GGG 0.615240 8_3:+19765100 Msa1280840:CDS
CCATAGGTATTGCAATCCAA+TGG 0.617062 8_3:+19764948 Msa1280840:CDS
ACATAGGTTGATTCATAACA+AGG 0.617116 8_3:-19764229 None:intergenic
GATCAAACCTAGCTTCAACC+TGG 0.619274 8_3:-19765092 None:intergenic
GAACCCCGAACCTTCACCGG+GGG 0.629310 8_3:+19763752 Msa1280840:CDS
ACCAGTGTTGGACATGATGT+GGG 0.635087 8_3:+19764894 Msa1280840:CDS
ACAAGAATTTGTGACCATGT+TGG 0.638031 8_3:+19765056 Msa1280840:CDS
TTGGACACCGTAGAAACCCC+CGG 0.639060 8_3:-19763768 None:intergenic
GATTGAAACTCAATCCAAAG+TGG 0.656440 8_3:-19763683 None:intergenic
TGTCCCCGTAGGCAAAGCCA+TGG 0.658805 8_3:-19764917 None:intergenic
GACCATGTTGGTCAAATGTG+GGG 0.660571 8_3:+19765068 Msa1280840:CDS
GCGTAGGTTACTTAAGCATG+GGG 0.671820 8_3:+19765284 Msa1280840:three_prime_UTR
TGACCCTACTAGAGCTAGTG+CGG 0.675155 8_3:+19765143 Msa1280840:CDS
TGGTCACGATTTGTCCCCGT+AGG 0.679424 8_3:-19764928 None:intergenic
AAAATGTCAAGAAATTAGGG+AGG 0.680447 8_3:+19764989 Msa1280840:CDS
CGAATCCTGATGGAGAGCAA+TGG 0.687815 8_3:+19764084 Msa1280840:CDS
GACCCCACATTTGACCAACA+TGG 0.691227 8_3:-19765070 None:intergenic
GAGACTATGGTGACCCATCG+AGG 0.705564 8_3:+19764111 Msa1280840:CDS
ACCATCAAACGACAATACCG+TGG 0.707154 8_3:+19763851 Msa1280840:CDS
AGGGTGTCTTGTAGGCACGG+TGG 0.724739 8_3:-19763719 None:intergenic
CGAACCCCGAACCTTCACCG+GGG 0.774672 8_3:+19763751 Msa1280840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTTTGACATTATTTT+TGG - chr8_3:19763654-19763673 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - chr8_3:19763885-19763904 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + chr8_3:19763885-19763904 Msa1280840:CDS 15.0%
!!! ATTTCATTTTAGTTTTATAG+AGG + chr8_3:19764630-19764649 Msa1280840:intron 15.0%
!! TAAAATTTCAAACATCTATA+AGG - chr8_3:19764692-19764711 None:intergenic 15.0%
!!! TCAAATTTTGACATTATTTT+TGG - chr8_3:19763654-19763673 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - chr8_3:19763885-19763904 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + chr8_3:19763885-19763904 Msa1280840:CDS 15.0%
!!! ATTTCATTTTAGTTTTATAG+AGG + chr8_3:19764630-19764649 Msa1280840:intron 15.0%
!! TAAAATTTCAAACATCTATA+AGG - chr8_3:19764692-19764711 None:intergenic 15.0%
!!! TTGATGATGAGAAAAAAATA+TGG + chr8_3:19763802-19763821 Msa1280840:CDS 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + chr8_3:19763803-19763822 Msa1280840:CDS 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - chr8_3:19763946-19763965 None:intergenic 20.0%
!!! AAAATATATCTTGACTTGTT+TGG + chr8_3:19764381-19764400 Msa1280840:intron 20.0%
!!! TTGATGATGAGAAAAAAATA+TGG + chr8_3:19763802-19763821 Msa1280840:CDS 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + chr8_3:19763803-19763822 Msa1280840:CDS 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - chr8_3:19763946-19763965 None:intergenic 20.0%
!!! AAAATATATCTTGACTTGTT+TGG + chr8_3:19764381-19764400 Msa1280840:intron 20.0%
!!! ATTTTTGGTTTTGTTCTTGA+AGG - chr8_3:19763639-19763658 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - chr8_3:19763790-19763809 None:intergenic 25.0%
! TTGATTTACTTTCATAATGG+TGG + chr8_3:19763888-19763907 Msa1280840:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - chr8_3:19763947-19763966 None:intergenic 25.0%
! AATTTCAAACATCTATAAGG+TGG - chr8_3:19764689-19764708 None:intergenic 25.0%
! CAAAATTACTCATTATCATG+TGG + chr8_3:19764773-19764792 Msa1280840:intron 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + chr8_3:19764845-19764864 Msa1280840:intron 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + chr8_3:19764985-19765004 Msa1280840:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + chr8_3:19764986-19765005 Msa1280840:CDS 25.0%
!! GAGTTTTTGTCATGATTAAT+TGG + chr8_3:19765199-19765218 Msa1280840:exon 25.0%
! CTGGATTATTAATGTAAGTT+TGG + chr8_3:19765257-19765276 Msa1280840:three_prime_UTR 25.0%
!!! GATAGTGAATTTTGATTTAG+CGG - chr8_3:19763582-19763601 None:intergenic 25.0%
!!! ATTTTTGGTTTTGTTCTTGA+AGG - chr8_3:19763639-19763658 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - chr8_3:19763790-19763809 None:intergenic 25.0%
! TTGATTTACTTTCATAATGG+TGG + chr8_3:19763888-19763907 Msa1280840:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - chr8_3:19763947-19763966 None:intergenic 25.0%
! AATTTCAAACATCTATAAGG+TGG - chr8_3:19764689-19764708 None:intergenic 25.0%
! CAAAATTACTCATTATCATG+TGG + chr8_3:19764773-19764792 Msa1280840:intron 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + chr8_3:19764845-19764864 Msa1280840:intron 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + chr8_3:19764985-19765004 Msa1280840:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + chr8_3:19764986-19765005 Msa1280840:CDS 25.0%
!! GAGTTTTTGTCATGATTAAT+TGG + chr8_3:19765199-19765218 Msa1280840:exon 25.0%
! CTGGATTATTAATGTAAGTT+TGG + chr8_3:19765257-19765276 Msa1280840:three_prime_UTR 25.0%
TTTGATCCATATAACCACTT+TGG + chr8_3:19763669-19763688 Msa1280840:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + chr8_3:19763817-19763836 Msa1280840:CDS 30.0%
TTTACTTTCATAATGGTGGT+TGG + chr8_3:19763892-19763911 Msa1280840:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + chr8_3:19763893-19763912 Msa1280840:CDS 30.0%
TGCAAACATTGTGTTCAATA+CGG + chr8_3:19764160-19764179 Msa1280840:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG - chr8_3:19764232-19764251 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + chr8_3:19764236-19764255 Msa1280840:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - chr8_3:19764276-19764295 None:intergenic 30.0%
GAGAATAACACATATCTCTT+TGG + chr8_3:19764351-19764370 Msa1280840:intron 30.0%
! GTAAGTTCCTGCTATAATTT+TGG + chr8_3:19764492-19764511 Msa1280840:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - chr8_3:19764544-19764563 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - chr8_3:19764670-19764689 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + chr8_3:19764708-19764727 Msa1280840:intron 30.0%
TTGATTCAAAGAGATTAAGG+TGG - chr8_3:19764751-19764770 None:intergenic 30.0%
GTCTTGATTCAAAGAGATTA+AGG - chr8_3:19764754-19764773 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - chr8_3:19764982-19765001 None:intergenic 30.0%
AAAATGTCAAGAAATTAGGG+AGG + chr8_3:19764989-19765008 Msa1280840:CDS 30.0%
TGCGGTTATAAATATTGCAA+GGG + chr8_3:19765161-19765180 Msa1280840:CDS 30.0%
TCTTTGTATTTCTCTTAGTC+TGG + chr8_3:19765238-19765257 Msa1280840:three_prime_UTR 30.0%
TTTGATCCATATAACCACTT+TGG + chr8_3:19763669-19763688 Msa1280840:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + chr8_3:19763817-19763836 Msa1280840:CDS 30.0%
TTTACTTTCATAATGGTGGT+TGG + chr8_3:19763892-19763911 Msa1280840:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + chr8_3:19763893-19763912 Msa1280840:CDS 30.0%
TGCAAACATTGTGTTCAATA+CGG + chr8_3:19764160-19764179 Msa1280840:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG - chr8_3:19764232-19764251 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + chr8_3:19764236-19764255 Msa1280840:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - chr8_3:19764276-19764295 None:intergenic 30.0%
GAGAATAACACATATCTCTT+TGG + chr8_3:19764351-19764370 Msa1280840:intron 30.0%
! GTAAGTTCCTGCTATAATTT+TGG + chr8_3:19764492-19764511 Msa1280840:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - chr8_3:19764544-19764563 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - chr8_3:19764670-19764689 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + chr8_3:19764708-19764727 Msa1280840:intron 30.0%
TTGATTCAAAGAGATTAAGG+TGG - chr8_3:19764751-19764770 None:intergenic 30.0%
GTCTTGATTCAAAGAGATTA+AGG - chr8_3:19764754-19764773 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - chr8_3:19764982-19765001 None:intergenic 30.0%
AAAATGTCAAGAAATTAGGG+AGG + chr8_3:19764989-19765008 Msa1280840:CDS 30.0%
TGCGGTTATAAATATTGCAA+GGG + chr8_3:19765161-19765180 Msa1280840:CDS 30.0%
TCTTTGTATTTCTCTTAGTC+TGG + chr8_3:19765238-19765257 Msa1280840:three_prime_UTR 30.0%
TTGTTCTTGAAGGATGATGA+TGG - chr8_3:19763629-19763648 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - chr8_3:19763678-19763697 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - chr8_3:19763686-19763705 None:intergenic 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - chr8_3:19763843-19763862 None:intergenic 35.0%
AATCAAATGACGAATCCTGA+TGG + chr8_3:19764074-19764093 Msa1280840:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - chr8_3:19764127-19764146 None:intergenic 35.0%
! AGGTGTTATCTTTATGGATG+TGG + chr8_3:19764131-19764150 Msa1280840:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG + chr8_3:19764137-19764156 Msa1280840:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - chr8_3:19764248-19764267 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + chr8_3:19764246-19764265 Msa1280840:CDS 35.0%
CATCAAGCCAAAATTATAGC+AGG - chr8_3:19764502-19764521 None:intergenic 35.0%
!!! GCTATAATTTTGGCTTGATG+TGG + chr8_3:19764502-19764521 Msa1280840:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + chr8_3:19764508-19764527 Msa1280840:intron 35.0%
GAGAAATCAAGAGACAAATG+AGG - chr8_3:19764587-19764606 None:intergenic 35.0%
TGTTGATCCAATGTTTGGTT+TGG - chr8_3:19764718-19764737 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - chr8_3:19764723-19764742 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + chr8_3:19764855-19764874 Msa1280840:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG + chr8_3:19764955-19764974 Msa1280840:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + chr8_3:19765056-19765075 Msa1280840:CDS 35.0%
GGTCAACCATATCAATATTG+TGG - chr8_3:19765128-19765147 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG + chr8_3:19765160-19765179 Msa1280840:CDS 35.0%
TTGTTCTTGAAGGATGATGA+TGG - chr8_3:19763629-19763648 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - chr8_3:19763678-19763697 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - chr8_3:19763686-19763705 None:intergenic 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - chr8_3:19763843-19763862 None:intergenic 35.0%
AATCAAATGACGAATCCTGA+TGG + chr8_3:19764074-19764093 Msa1280840:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - chr8_3:19764127-19764146 None:intergenic 35.0%
! AGGTGTTATCTTTATGGATG+TGG + chr8_3:19764131-19764150 Msa1280840:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG + chr8_3:19764137-19764156 Msa1280840:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - chr8_3:19764248-19764267 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + chr8_3:19764246-19764265 Msa1280840:CDS 35.0%
CATCAAGCCAAAATTATAGC+AGG - chr8_3:19764502-19764521 None:intergenic 35.0%
!!! GCTATAATTTTGGCTTGATG+TGG + chr8_3:19764502-19764521 Msa1280840:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + chr8_3:19764508-19764527 Msa1280840:intron 35.0%
GAGAAATCAAGAGACAAATG+AGG - chr8_3:19764587-19764606 None:intergenic 35.0%
TGTTGATCCAATGTTTGGTT+TGG - chr8_3:19764718-19764737 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - chr8_3:19764723-19764742 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + chr8_3:19764855-19764874 Msa1280840:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG + chr8_3:19764955-19764974 Msa1280840:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + chr8_3:19765056-19765075 Msa1280840:CDS 35.0%
GGTCAACCATATCAATATTG+TGG - chr8_3:19765128-19765147 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG + chr8_3:19765160-19765179 Msa1280840:CDS 35.0%
GGATTGAGTTTCAATCCTGA+CGG + chr8_3:19763690-19763709 Msa1280840:CDS 40.0%
TCGAGCATCTTGATATTGTC+CGG - chr8_3:19764033-19764052 None:intergenic 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + chr8_3:19764045-19764064 Msa1280840:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + chr8_3:19764046-19764065 Msa1280840:CDS 40.0%
CCATAAAGATAACACCTCGA+TGG - chr8_3:19764128-19764147 None:intergenic 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + chr8_3:19764125-19764144 Msa1280840:CDS 40.0%
TTCAATACGGCCATTCAGAT+TGG + chr8_3:19764173-19764192 Msa1280840:CDS 40.0%
GTCCATATCTCCAATCTGAA+TGG - chr8_3:19764186-19764205 None:intergenic 40.0%
ATATGGACTTAGAGCCTCTA+AGG + chr8_3:19764198-19764217 Msa1280840:CDS 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + chr8_3:19764206-19764225 Msa1280840:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + chr8_3:19764250-19764269 Msa1280840:CDS 40.0%
! ACAAGTTTTCTCGTGTCTCA+AGG + chr8_3:19764416-19764435 Msa1280840:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG - chr8_3:19764892-19764911 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - chr8_3:19764951-19764970 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + chr8_3:19764948-19764967 Msa1280840:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - chr8_3:19764967-19764986 None:intergenic 40.0%
AATGGCAAAAGGACCACATT+TGG + chr8_3:19764966-19764985 Msa1280840:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + chr8_3:19765003-19765022 Msa1280840:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + chr8_3:19765004-19765023 Msa1280840:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + chr8_3:19765009-19765028 Msa1280840:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + chr8_3:19765012-19765031 Msa1280840:CDS 40.0%
TGACCATGTTGGTCAAATGT+GGG + chr8_3:19765067-19765086 Msa1280840:CDS 40.0%
GGGGTTCCACAATATTGATA+TGG + chr8_3:19765119-19765138 Msa1280840:CDS 40.0%
AGCGTAGGTTACTTAAGCAT+GGG + chr8_3:19765283-19765302 Msa1280840:three_prime_UTR 40.0%
GGATTGAGTTTCAATCCTGA+CGG + chr8_3:19763690-19763709 Msa1280840:CDS 40.0%
TCGAGCATCTTGATATTGTC+CGG - chr8_3:19764033-19764052 None:intergenic 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + chr8_3:19764045-19764064 Msa1280840:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + chr8_3:19764046-19764065 Msa1280840:CDS 40.0%
CCATAAAGATAACACCTCGA+TGG - chr8_3:19764128-19764147 None:intergenic 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + chr8_3:19764125-19764144 Msa1280840:CDS 40.0%
TTCAATACGGCCATTCAGAT+TGG + chr8_3:19764173-19764192 Msa1280840:CDS 40.0%
GTCCATATCTCCAATCTGAA+TGG - chr8_3:19764186-19764205 None:intergenic 40.0%
ATATGGACTTAGAGCCTCTA+AGG + chr8_3:19764198-19764217 Msa1280840:CDS 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + chr8_3:19764206-19764225 Msa1280840:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + chr8_3:19764250-19764269 Msa1280840:CDS 40.0%
! ACAAGTTTTCTCGTGTCTCA+AGG + chr8_3:19764416-19764435 Msa1280840:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG - chr8_3:19764892-19764911 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - chr8_3:19764951-19764970 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + chr8_3:19764948-19764967 Msa1280840:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - chr8_3:19764967-19764986 None:intergenic 40.0%
AATGGCAAAAGGACCACATT+TGG + chr8_3:19764966-19764985 Msa1280840:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + chr8_3:19765003-19765022 Msa1280840:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + chr8_3:19765004-19765023 Msa1280840:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + chr8_3:19765009-19765028 Msa1280840:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + chr8_3:19765012-19765031 Msa1280840:CDS 40.0%
TGACCATGTTGGTCAAATGT+GGG + chr8_3:19765067-19765086 Msa1280840:CDS 40.0%
GGGGTTCCACAATATTGATA+TGG + chr8_3:19765119-19765138 Msa1280840:CDS 40.0%
AGCGTAGGTTACTTAAGCAT+GGG + chr8_3:19765283-19765302 Msa1280840:three_prime_UTR 40.0%
ACCATCAAACGACAATACCG+TGG + chr8_3:19763851-19763870 Msa1280840:CDS 45.0%
GCGACAGAGACAACAATACT+AGG - chr8_3:19763981-19764000 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+GGG - chr8_3:19764032-19764051 None:intergenic 45.0%
GAGCAATGGTTGAGAGACTA+TGG + chr8_3:19764098-19764117 Msa1280840:CDS 45.0%
GGCCATTCAGATTGGAGATA+TGG + chr8_3:19764181-19764200 Msa1280840:CDS 45.0%
ACAAGGCCACTAATCCTTAG+AGG - chr8_3:19764215-19764234 None:intergenic 45.0%
!! TGACTTGTTTGGATGTGCGA+TGG + chr8_3:19764392-19764411 Msa1280840:intron 45.0%
CATCATGTCCAACACTGGTA+AGG - chr8_3:19764893-19764912 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG + chr8_3:19764893-19764912 Msa1280840:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + chr8_3:19764894-19764913 Msa1280840:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + chr8_3:19765066-19765085 Msa1280840:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + chr8_3:19765068-19765087 Msa1280840:CDS 45.0%
GATCAAACCTAGCTTCAACC+TGG - chr8_3:19765095-19765114 None:intergenic 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + chr8_3:19765098-19765117 Msa1280840:CDS 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + chr8_3:19765099-19765118 Msa1280840:CDS 45.0%
AAGCTAGGTTTGATCCTGTG+GGG + chr8_3:19765100-19765119 Msa1280840:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG - chr8_3:19765117-19765136 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - chr8_3:19765149-19765168 None:intergenic 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - chr8_3:19765150-19765169 None:intergenic 45.0%
!! ATGTAAGTTTGGTGCAGCGT+AGG + chr8_3:19765268-19765287 Msa1280840:three_prime_UTR 45.0%
CAGCGTAGGTTACTTAAGCA+TGG + chr8_3:19765282-19765301 Msa1280840:three_prime_UTR 45.0%
GCGTAGGTTACTTAAGCATG+GGG + chr8_3:19765284-19765303 Msa1280840:three_prime_UTR 45.0%
ACCATCAAACGACAATACCG+TGG + chr8_3:19763851-19763870 Msa1280840:CDS 45.0%
GCGACAGAGACAACAATACT+AGG - chr8_3:19763981-19764000 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+GGG - chr8_3:19764032-19764051 None:intergenic 45.0%
GAGCAATGGTTGAGAGACTA+TGG + chr8_3:19764098-19764117 Msa1280840:CDS 45.0%
GGCCATTCAGATTGGAGATA+TGG + chr8_3:19764181-19764200 Msa1280840:CDS 45.0%
ACAAGGCCACTAATCCTTAG+AGG - chr8_3:19764215-19764234 None:intergenic 45.0%
!! TGACTTGTTTGGATGTGCGA+TGG + chr8_3:19764392-19764411 Msa1280840:intron 45.0%
CATCATGTCCAACACTGGTA+AGG - chr8_3:19764893-19764912 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG + chr8_3:19764893-19764912 Msa1280840:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + chr8_3:19764894-19764913 Msa1280840:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + chr8_3:19765066-19765085 Msa1280840:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + chr8_3:19765068-19765087 Msa1280840:CDS 45.0%
GATCAAACCTAGCTTCAACC+TGG - chr8_3:19765095-19765114 None:intergenic 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + chr8_3:19765098-19765117 Msa1280840:CDS 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + chr8_3:19765099-19765118 Msa1280840:CDS 45.0%
AAGCTAGGTTTGATCCTGTG+GGG + chr8_3:19765100-19765119 Msa1280840:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG - chr8_3:19765117-19765136 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - chr8_3:19765149-19765168 None:intergenic 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - chr8_3:19765150-19765169 None:intergenic 45.0%
!! ATGTAAGTTTGGTGCAGCGT+AGG + chr8_3:19765268-19765287 Msa1280840:three_prime_UTR 45.0%
CAGCGTAGGTTACTTAAGCA+TGG + chr8_3:19765282-19765301 Msa1280840:three_prime_UTR 45.0%
GCGTAGGTTACTTAAGCATG+GGG + chr8_3:19765284-19765303 Msa1280840:three_prime_UTR 45.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - chr8_3:19763725-19763744 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - chr8_3:19763855-19763874 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - chr8_3:19763871-19763890 None:intergenic 50.0%
TTATGGGTACCAGCATCAGC+CGG - chr8_3:19763930-19763949 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + chr8_3:19763988-19764007 Msa1280840:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + chr8_3:19763989-19764008 Msa1280840:CDS 50.0%
CGAATCCTGATGGAGAGCAA+TGG + chr8_3:19764084-19764103 Msa1280840:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - chr8_3:19764092-19764111 None:intergenic 50.0%
AAAGGACGGCCTCGGAAATA+AGG + chr8_3:19764264-19764283 Msa1280840:CDS 50.0%
GGCACTGCACAACCAAACAT+AGG + chr8_3:19764529-19764548 Msa1280840:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - chr8_3:19764863-19764882 None:intergenic 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - chr8_3:19764882-19764901 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + chr8_3:19764882-19764901 Msa1280840:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG + chr8_3:19765023-19765042 Msa1280840:CDS 50.0%
GACCCCACATTTGACCAACA+TGG - chr8_3:19765073-19765092 None:intergenic 50.0%
TGACCCTACTAGAGCTAGTG+CGG + chr8_3:19765143-19765162 Msa1280840:CDS 50.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - chr8_3:19763725-19763744 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - chr8_3:19763855-19763874 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - chr8_3:19763871-19763890 None:intergenic 50.0%
TTATGGGTACCAGCATCAGC+CGG - chr8_3:19763930-19763949 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + chr8_3:19763988-19764007 Msa1280840:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + chr8_3:19763989-19764008 Msa1280840:CDS 50.0%
CGAATCCTGATGGAGAGCAA+TGG + chr8_3:19764084-19764103 Msa1280840:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - chr8_3:19764092-19764111 None:intergenic 50.0%
AAAGGACGGCCTCGGAAATA+AGG + chr8_3:19764264-19764283 Msa1280840:CDS 50.0%
GGCACTGCACAACCAAACAT+AGG + chr8_3:19764529-19764548 Msa1280840:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - chr8_3:19764863-19764882 None:intergenic 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - chr8_3:19764882-19764901 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + chr8_3:19764882-19764901 Msa1280840:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG + chr8_3:19765023-19765042 Msa1280840:CDS 50.0%
GACCCCACATTTGACCAACA+TGG - chr8_3:19765073-19765092 None:intergenic 50.0%
TGACCCTACTAGAGCTAGTG+CGG + chr8_3:19765143-19765162 Msa1280840:CDS 50.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - chr8_3:19763730-19763749 None:intergenic 55.0%
AGAAACCCCCGGTGAAGGTT+CGG - chr8_3:19763760-19763779 None:intergenic 55.0%
ACCTTCACCGGGGGTTTCTA+CGG + chr8_3:19763761-19763780 Msa1280840:CDS 55.0%
TTGGACACCGTAGAAACCCC+CGG - chr8_3:19763771-19763790 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + chr8_3:19763908-19763927 Msa1280840:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - chr8_3:19763929-19763948 None:intergenic 55.0%
TGTCCGGGTAACCTAGTCTC+TGG - chr8_3:19764017-19764036 None:intergenic 55.0%
GAGACTATGGTGACCCATCG+AGG + chr8_3:19764111-19764130 Msa1280840:CDS 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + chr8_3:19764256-19764275 Msa1280840:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - chr8_3:19764898-19764917 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + chr8_3:19764900-19764919 Msa1280840:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - chr8_3:19764931-19764950 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + chr8_3:19764932-19764951 Msa1280840:CDS 55.0%
GTTGGTCAAATGTGGGGTCC+AGG + chr8_3:19765074-19765093 Msa1280840:CDS 55.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - chr8_3:19763730-19763749 None:intergenic 55.0%
AGAAACCCCCGGTGAAGGTT+CGG - chr8_3:19763760-19763779 None:intergenic 55.0%
ACCTTCACCGGGGGTTTCTA+CGG + chr8_3:19763761-19763780 Msa1280840:CDS 55.0%
TTGGACACCGTAGAAACCCC+CGG - chr8_3:19763771-19763790 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + chr8_3:19763908-19763927 Msa1280840:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - chr8_3:19763929-19763948 None:intergenic 55.0%
TGTCCGGGTAACCTAGTCTC+TGG - chr8_3:19764017-19764036 None:intergenic 55.0%
GAGACTATGGTGACCCATCG+AGG + chr8_3:19764111-19764130 Msa1280840:CDS 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + chr8_3:19764256-19764275 Msa1280840:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - chr8_3:19764898-19764917 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + chr8_3:19764900-19764919 Msa1280840:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - chr8_3:19764931-19764950 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + chr8_3:19764932-19764951 Msa1280840:CDS 55.0%
GTTGGTCAAATGTGGGGTCC+AGG + chr8_3:19765074-19765093 Msa1280840:CDS 55.0%
! AGGGTGTCTTGTAGGCACGG+TGG - chr8_3:19763722-19763741 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - chr8_3:19763748-19763767 None:intergenic 60.0%
AAACCCCCGGTGAAGGTTCG+GGG - chr8_3:19763758-19763777 None:intergenic 60.0%
GAAACCCCCGGTGAAGGTTC+GGG - chr8_3:19763759-19763778 None:intergenic 60.0%
ACCGTAGAAACCCCCGGTGA+AGG - chr8_3:19763765-19763784 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + chr8_3:19763918-19763937 Msa1280840:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - chr8_3:19763923-19763942 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - chr8_3:19764003-19764022 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + chr8_3:19764003-19764022 Msa1280840:CDS 60.0%
GCGCCAGAGACTAGGTTACC+CGG + chr8_3:19764011-19764030 Msa1280840:CDS 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + chr8_3:19764912-19764931 Msa1280840:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + chr8_3:19764913-19764932 Msa1280840:CDS 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - chr8_3:19764920-19764939 None:intergenic 60.0%
! GTGGGGTCCAGGTTGAAGCT+AGG + chr8_3:19765085-19765104 Msa1280840:CDS 60.0%
! AGGGTGTCTTGTAGGCACGG+TGG - chr8_3:19763722-19763741 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - chr8_3:19763748-19763767 None:intergenic 60.0%
AAACCCCCGGTGAAGGTTCG+GGG - chr8_3:19763758-19763777 None:intergenic 60.0%
GAAACCCCCGGTGAAGGTTC+GGG - chr8_3:19763759-19763778 None:intergenic 60.0%
ACCGTAGAAACCCCCGGTGA+AGG - chr8_3:19763765-19763784 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + chr8_3:19763918-19763937 Msa1280840:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - chr8_3:19763923-19763942 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - chr8_3:19764003-19764022 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + chr8_3:19764003-19764022 Msa1280840:CDS 60.0%
GCGCCAGAGACTAGGTTACC+CGG + chr8_3:19764011-19764030 Msa1280840:CDS 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + chr8_3:19764912-19764931 Msa1280840:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + chr8_3:19764913-19764932 Msa1280840:CDS 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - chr8_3:19764920-19764939 None:intergenic 60.0%
! GTGGGGTCCAGGTTGAAGCT+AGG + chr8_3:19765085-19765104 Msa1280840:CDS 60.0%
GCACGGTGGAGAGTTCCGTC+AGG - chr8_3:19763708-19763727 None:intergenic 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - chr8_3:19763741-19763760 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - chr8_3:19763742-19763761 None:intergenic 65.0%
CGCGAACCCCGAACCTTCAC+CGG + chr8_3:19763749-19763768 Msa1280840:CDS 65.0%
GCGAACCCCGAACCTTCACC+GGG + chr8_3:19763750-19763769 Msa1280840:CDS 65.0%
CGAACCCCGAACCTTCACCG+GGG + chr8_3:19763751-19763770 Msa1280840:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + chr8_3:19763752-19763771 Msa1280840:CDS 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + chr8_3:19764914-19764933 Msa1280840:CDS 65.0%
GCACGGTGGAGAGTTCCGTC+AGG - chr8_3:19763708-19763727 None:intergenic 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - chr8_3:19763741-19763760 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - chr8_3:19763742-19763761 None:intergenic 65.0%
CGCGAACCCCGAACCTTCAC+CGG + chr8_3:19763749-19763768 Msa1280840:CDS 65.0%
GCGAACCCCGAACCTTCACC+GGG + chr8_3:19763750-19763769 Msa1280840:CDS 65.0%
CGAACCCCGAACCTTCACCG+GGG + chr8_3:19763751-19763770 Msa1280840:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + chr8_3:19763752-19763771 Msa1280840:CDS 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + chr8_3:19764914-19764933 Msa1280840:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 19763580 19765337 19763580 ID=Msa1280840;Name=Msa1280840
chr8_3 mRNA 19763580 19765337 19763580 ID=Msa1280840-mRNA-1;Parent=Msa1280840;Name=Msa1280840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=80|1|1|1|1|1|2|137|319
chr8_3 exon 19763580 19764285 19763580 ID=Msa1280840-mRNA-1:exon:7288;Parent=Msa1280840-mRNA-1
chr8_3 exon 19764867 19765337 19764867 ID=Msa1280840-mRNA-1:exon:7289;Parent=Msa1280840-mRNA-1
chr8_3 five_prime_UTR 19763580 19763659 19763580 ID=Msa1280840-mRNA-1:five_prime_utr;Parent=Msa1280840-mRNA-1
chr8_3 CDS 19763660 19764285 19763660 ID=Msa1280840-mRNA-1:cds;Parent=Msa1280840-mRNA-1
chr8_3 CDS 19764867 19765200 19764867 ID=Msa1280840-mRNA-1:cds;Parent=Msa1280840-mRNA-1
chr8_3 three_prime_UTR 19765201 19765337 19765201 ID=Msa1280840-mRNA-1:three_prime_utr;Parent=Msa1280840-mRNA-1
Gene Sequence

>Msa1280840

ATGTCAAAATTTGATCCATATAACCACTTTGGATTGAGTTTCAATCCTGACGGAACTCTCCACCGTGCCTACAAGACACCCTCAACCGACGCGAACCCCGAACCTTCACCGGGGGTTTCTACGGTGTCCAAAGACATAACAATTGATGATGAGAAAAAAATATGGGTTCGAATTTTCAGGCCAACAAAACTACCATCAAACGACAATACCGTGGCGCGTTTACCGATATTGATTTACTTTCATAATGGTGGTTGGGTCATCCTAAGCCCGGCTGATGCTGGTACCCATAAAAAATGTTCGAATCTTGCTTCTGACATTCCTAGTATTGTTGTCTCTGTCGCCTTTCGTTGGGCGCCAGAGACTAGGTTACCCGGACAATATCAAGATGCTCGAGATGCTATTTTGTGGGTGAAAAATCAAATGACGAATCCTGATGGAGAGCAATGGTTGAGAGACTATGGTGACCCATCGAGGTGTTATCTTTATGGATGTGGTTGTGGTGCAAACATTGTGTTCAATACGGCCATTCAGATTGGAGATATGGACTTAGAGCCTCTAAGGATTAGTGGCCTTGTTATGAATCAACCTATGTTTTCTGGAGAGAAAAGGACGGCCTCGGAAATAAGGTTTGCAACGGACCAGACTTTGCCCTTACCAGTGTTGGACATGATGTGGGCCATGGCTTTGCCTACGGGGACAAATCGTGACCATAGGTATTGCAATCCAATGGCAAAAGGACCACATTTGGAAAATGTCAAGAAATTAGGGAGGTGTCTTGTTATTGGGTATGGTGGAGACATCATGGTTGATCGACAACAAGAATTTGTGACCATGTTGGTCAAATGTGGGGTCCAGGTTGAAGCTAGGTTTGATCCTGTGGGGTTCCACAATATTGATATGGTTGACCCTACTAGAGCTAGTGCGGTTATAAATATTGCAAGGGAGTTTATTATACTTTGA
Protein sequence

>Msa1280840

MSKFDPYNHFGLSFNPDGTLHRAYKTPSTDANPEPSPGVSTVSKDITIDDEKKIWVRIFRPTKLPSNDNTVARLPILIYFHNGGWVILSPADAGTHKKCSNLASDIPSIVVSVAFRWAPETRLPGQYQDARDAILWVKNQMTNPDGEQWLRDYGDPSRCYLYGCGCGANIVFNTAIQIGDMDLEPLRISGLVMNQPMFSGEKRTASEIRFATDQTLPLPVLDMMWAMALPTGTNRDHRYCNPMAKGPHLENVKKLGRCLVIGYGGDIMVDRQQEFVTMLVKCGVQVEARFDPVGFHNIDMVDPTRASAVINIAREFIIL*