AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1239510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239510 MtrunA17_Chr8g0351171 96.238 319 12 0 1 319 1 319 0.0 650
Msa1239510 MtrunA17_Chr8g0351211 40.881 318 182 4 5 318 2 317 2.69e-90 272
Msa1239510 MtrunA17_Chr8g0351201 42.138 318 178 4 2 317 11 324 5.39e-90 271
Msa1239510 MtrunA17_Chr6g0474411 39.498 319 179 5 5 317 16 326 4.16e-83 254
Msa1239510 MtrunA17_Chr6g0474491 36.250 320 190 5 5 317 12 324 3.01e-73 229
Msa1239510 MtrunA17_Chr6g0474471 35.312 320 193 6 5 317 13 325 5.61e-72 226
Msa1239510 MtrunA17_Chr1g0204211 37.975 316 181 5 2 312 28 333 2.16e-71 224
Msa1239510 MtrunA17_Chr1g0204201 37.037 324 187 6 4 318 11 326 2.36e-71 224
Msa1239510 MtrunA17_Chr6g0474541 37.742 310 181 6 5 310 41 342 2.19e-69 220
Msa1239510 MtrunA17_Chr6g0474631 35.577 312 181 9 15 317 24 324 9.10e-64 204
Msa1239510 MtrunA17_Chr7g0214851 32.407 324 198 8 12 317 29 349 1.39e-52 176
Msa1239510 MtrunA17_Chr1g0210121 31.818 308 188 10 12 309 34 329 6.89e-45 156
Msa1239510 MtrunA17_Chr6g0477231 32.414 290 176 5 10 287 23 304 4.25e-44 154
Msa1239510 MtrunA17_Chr6g0477161 35.206 267 154 6 29 287 48 303 6.14e-44 159
Msa1239510 MtrunA17_Chr6g0477161 33.333 282 167 7 17 287 381 652 4.55e-41 151
Msa1239510 MtrunA17_Chr7g0268091 31.447 318 192 11 12 318 15 317 2.45e-41 146
Msa1239510 MtrunA17_Chr6g0477251 30.696 316 198 7 13 317 582 887 1.58e-39 147
Msa1239510 MtrunA17_Chr6g0477251 30.063 316 200 7 13 317 28 333 2.44e-39 147
Msa1239510 MtrunA17_Chr6g0477271 33.213 277 168 7 17 287 55 320 1.28e-38 140
Msa1239510 MtrunA17_Chr4g0025291 28.214 280 189 5 44 317 42 315 3.10e-36 132
Msa1239510 MtrunA17_Chr4g0045181 31.621 253 163 4 33 283 35 279 3.73e-35 130
Msa1239510 MtrunA17_Chr1g0191301 31.613 310 178 10 8 296 25 321 7.69e-34 127
Msa1239510 MtrunA17_Chr3g0081521 30.627 271 174 5 57 317 74 340 5.35e-33 124
Msa1239510 MtrunA17_Chr6g0474611 36.471 170 98 4 157 317 2 170 7.06e-33 119
Msa1239510 MtrunA17_Chr7g0235741 31.557 244 155 5 43 283 77 311 7.87e-32 121
Msa1239510 MtrunA17_Chr4g0045131 30.717 293 182 8 33 317 75 354 1.06e-31 121
Msa1239510 MtrunA17_Chr3g0133701 29.893 281 169 9 12 283 15 276 3.52e-31 119
Msa1239510 MtrunA17_Chr7g0259161 28.981 314 187 10 8 296 25 327 4.28e-31 119
Msa1239510 MtrunA17_Chr6g0477241 31.651 218 131 5 17 225 43 251 4.34e-31 118
Msa1239510 MtrunA17_Chr4g0045121 31.621 253 160 5 33 283 38 279 2.27e-30 117
Msa1239510 MtrunA17_Chr1g0196311 31.164 292 166 10 8 279 41 317 3.55e-30 117
Msa1239510 MtrunA17_Chr5g0394251 29.537 281 184 9 17 290 26 299 3.36e-29 114
Msa1239510 MtrunA17_Chr4g0045191 28.383 303 178 8 17 314 31 299 4.45e-28 110
Msa1239510 MtrunA17_Chr1g0149271 34.199 231 128 7 17 241 16 228 2.54e-27 108
Msa1239510 MtrunA17_Chr1g0205871 31.475 305 179 12 17 301 21 315 5.64e-26 105
Msa1239510 MtrunA17_Chr5g0394241 29.545 264 168 8 17 271 22 276 2.73e-25 103
Msa1239510 MtrunA17_Chr5g0394211 33.058 242 136 10 17 246 56 283 1.88e-24 101
Msa1239510 MtrunA17_Chr8g0353951 29.545 308 194 11 17 314 29 323 3.95e-24 100
Msa1239510 MtrunA17_Chr6g0458881 28.906 256 145 7 64 284 147 400 7.19e-24 101
Msa1239510 MtrunA17_Chr3g0095711 31.579 266 158 10 17 271 66 318 7.78e-24 100
Msa1239510 MtrunA17_Chr7g0228721 29.730 222 115 5 65 246 156 376 1.11e-23 100
Msa1239510 MtrunA17_Chr7g0233871 30.769 273 173 11 17 283 25 287 5.47e-21 91.7
Msa1239510 MtrunA17_Chr1g0205781 30.403 273 171 11 17 283 25 284 5.59e-20 89.0
Msa1239510 MtrunA17_Chr1g0205791 30.081 246 154 8 43 283 46 278 3.94e-17 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239510 AT2G45610.1 52.698 315 148 1 4 317 9 323 1.16e-123 357
Msa1239510 AT2G45600.1 40.123 324 166 8 5 317 9 315 1.88e-81 250
Msa1239510 AT5G62180.1 35.404 322 194 6 5 318 9 324 1.78e-68 217
Msa1239510 AT1G68620.1 32.567 261 163 6 17 275 36 285 4.75e-38 138
Msa1239510 AT5G16080.1 30.142 282 182 8 32 307 54 326 9.79e-34 127
Msa1239510 AT5G23530.1 29.965 287 179 8 16 296 34 304 1.60e-33 126
Msa1239510 AT5G06570.1 33.080 263 162 8 40 297 46 299 9.67e-33 124
Msa1239510 AT5G06570.2 33.080 263 162 8 40 297 46 299 9.67e-33 124
Msa1239510 AT5G06570.3 33.080 263 162 8 40 297 61 314 1.22e-32 124
Msa1239510 AT5G06570.4 33.080 263 162 8 40 297 61 314 1.22e-32 124
Msa1239510 AT5G27320.1 29.032 310 185 10 8 296 25 320 9.55e-31 119
Msa1239510 AT3G63010.1 29.470 302 176 10 16 296 37 322 9.40e-30 116
Msa1239510 AT3G05120.1 29.470 302 175 10 8 287 25 310 2.90e-28 112
Msa1239510 AT1G19190.1 28.947 266 166 7 26 283 25 275 2.87e-27 108
Msa1239510 AT1G47480.1 28.676 272 174 7 12 281 16 269 3.68e-26 105
Msa1239510 AT5G14310.1 29.688 256 143 5 65 284 142 396 7.60e-26 107
Msa1239510 AT3G48690.1 28.929 280 181 7 12 283 13 282 1.30e-25 104
Msa1239510 AT2G03550.1 27.891 294 196 6 29 317 28 310 2.43e-24 100
Msa1239510 AT3G27320.2 29.658 263 147 7 58 284 118 378 3.24e-24 102
Msa1239510 AT3G27320.1 29.658 263 147 7 58 284 150 410 4.84e-24 102
Msa1239510 AT1G49640.1 31.868 182 117 3 22 202 21 196 1.50e-23 99.0
Msa1239510 AT1G49650.1 32.979 188 116 4 17 201 74 254 7.16e-23 97.8
Msa1239510 AT1G49660.1 27.407 270 183 6 17 282 18 278 1.07e-22 96.7
Msa1239510 AT3G48700.1 27.941 204 138 4 33 230 32 232 2.63e-21 92.8

Find 112 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAAATGTCAAGAAATT+AGG 0.125161 8_2:+21270127 Msa1239510:CDS
CCATCGAGGTGTTATCTTTA+TGG 0.162050 8_2:+21269267 Msa1239510:CDS
ATCATCAATTGTTATGTCTT+TGG 0.205110 8_2:-21268929 None:intergenic
CTCAATCCAAAGTGGTTATA+TGG 0.248180 8_2:-21268817 None:intergenic
TTAGGGAGGTGTCTTGTTAT+TGG 0.287339 8_2:+21270145 Msa1239510:CDS
TTCGGGGTTCGCGTCGGTTG+AGG 0.309991 8_2:-21268881 None:intergenic
TGGAAAATGTCAAGAAATTA+GGG 0.314810 8_2:+21270128 Msa1239510:CDS
CTGGATTATTAATGTAAGTT+TGG 0.326120 8_2:+21270399 Msa1239510:three_prime_UTR
AAAGGACGGCCTCGGAAATA+AGG 0.329749 8_2:+21269406 Msa1239510:CDS
TAGGGAGGTGTCTTGTTATT+GGG 0.337672 8_2:+21270146 Msa1239510:CDS
TCTTTGTATTTCTCTTAGTC+TGG 0.345016 8_2:+21270380 Msa1239510:three_prime_UTR
AATGGCAAAAGGACCACATT+TGG 0.377354 8_2:+21270108 Msa1239510:CDS
GTCGGTTGAGGGTGTCTTGT+AGG 0.384926 8_2:-21268869 None:intergenic
CGCGAACCCCGAACCTTCAC+CGG 0.388207 8_2:+21268891 Msa1239510:CDS
ATATTGATTTACTTTCATAA+TGG 0.392883 8_2:+21269027 Msa1239510:CDS
ATATGGACTTAGAGCCTCTA+AGG 0.394329 8_2:+21269340 Msa1239510:CDS
TCGGGGTTCGCGTCGGTTGA+GGG 0.394609 8_2:-21268880 None:intergenic
GGCCATTCAGATTGGAGATA+TGG 0.409202 8_2:+21269323 Msa1239510:CDS
TGGGCCATGGCTTTGCCTAC+GGG 0.409884 8_2:+21270055 Msa1239510:CDS
ACAAGGCCACTAATCCTTAG+AGG 0.416771 8_2:-21269354 None:intergenic
GACTTTGCCCTTACCAGTGT+TGG 0.417668 8_2:+21270024 Msa1239510:CDS
TTCAATACGGCCATTCAGAT+TGG 0.423842 8_2:+21269315 Msa1239510:CDS
TTACTTTCATAATGGTGGTT+GGG 0.428229 8_2:+21269035 Msa1239510:CDS
GTGGGCCATGGCTTTGCCTA+CGG 0.428532 8_2:+21270054 Msa1239510:CDS
ATAACCGCACTAGCTCTAGT+AGG 0.431582 8_2:-21270289 None:intergenic
TTTACTTTCATAATGGTGGT+TGG 0.431824 8_2:+21269034 Msa1239510:CDS
TTTGATCCATATAACCACTT+TGG 0.433703 8_2:+21268811 Msa1239510:CDS
AGGTGTCTTGTTATTGGGTA+TGG 0.434253 8_2:+21270151 Msa1239510:CDS
TATCTTTATGGATGTGGTTG+TGG 0.434607 8_2:+21269279 Msa1239510:CDS
TGTCTCTGTCGCCTTTCGTT+GGG 0.438448 8_2:+21269131 Msa1239510:CDS
CTCAACCATTGCTCTCCATC+AGG 0.438600 8_2:-21269231 None:intergenic
TTATGAAAGTAAATCAATAT+CGG 0.442305 8_2:-21269024 None:intergenic
TCGAGCATCTTGATATTGTC+CGG 0.444661 8_2:-21269172 None:intergenic
ATCCTAAGCCCGGCTGATGC+TGG 0.450512 8_2:+21269060 Msa1239510:CDS
TTGTCTCTGTCGCCTTTCGT+TGG 0.451494 8_2:+21269130 Msa1239510:CDS
CCATTGGATTGCAATACCTA+TGG 0.454707 8_2:-21270090 None:intergenic
TGAAGCTAGGTTTGATCCTG+TGG 0.468258 8_2:+21270240 Msa1239510:CDS
TTAGAGCCTCTAAGGATTAG+TGG 0.468499 8_2:+21269348 Msa1239510:CDS
GCCACGGTATTGTCGTTTGA+TGG 0.470251 8_2:-21268994 None:intergenic
TTATGGGTACCAGCATCAGC+CGG 0.476238 8_2:-21269069 None:intergenic
GGGGTTCCACAATATTGATA+TGG 0.477353 8_2:+21270261 Msa1239510:CDS
TACCAGCATCAGCCGGGCTT+AGG 0.478525 8_2:-21269062 None:intergenic
GCGACAGAGACAACAATACT+AGG 0.481339 8_2:-21269120 None:intergenic
GAGCAATGGTTGAGAGACTA+TGG 0.482302 8_2:+21269240 Msa1239510:CDS
GCGAACCCCGAACCTTCACC+GGG 0.488799 8_2:+21268892 Msa1239510:CDS
CATCATGTCCAACACTGGTA+AGG 0.489057 8_2:-21270032 None:intergenic
AGGTGTTATCTTTATGGATG+TGG 0.490354 8_2:+21269273 Msa1239510:CDS
GTTGGTCAAATGTGGGGTCC+AGG 0.492083 8_2:+21270216 Msa1239510:CDS
TGGAGAGAAAAGGACGGCCT+CGG 0.492416 8_2:+21269398 Msa1239510:CDS
GAAGCTAGGTTTGATCCTGT+GGG 0.500369 8_2:+21270241 Msa1239510:CDS
CAGCGTAGGTTACTTAAGCA+TGG 0.502232 8_2:+21270424 Msa1239510:three_prime_UTR
TTCGTTGGGCGCCAGAGACT+AGG 0.511728 8_2:+21269145 Msa1239510:CDS
TTGATTTACTTTCATAATGG+TGG 0.512216 8_2:+21269030 Msa1239510:CDS
TGTCTTGTTATTGGGTATGG+TGG 0.512697 8_2:+21270154 Msa1239510:CDS
TGACCATGTTGGTCAAATGT+GGG 0.525547 8_2:+21270209 Msa1239510:CDS
AATTATGAACCTTATTTCCG+AGG 0.528856 8_2:-21269415 None:intergenic
TATTGCAATCCAATGGCAAA+AGG 0.529808 8_2:+21270097 Msa1239510:CDS
ACACTGGTAAGGGCAAAGTC+TGG 0.531768 8_2:-21270021 None:intergenic
GTGACCATGTTGGTCAAATG+TGG 0.535257 8_2:+21270208 Msa1239510:CDS
TTCTTCCAAAAGGTTTGCAA+CGG 0.535946 8_2:+21269997 Msa1239510:intron
TATGGGTACCAGCATCAGCC+GGG 0.538444 8_2:-21269068 None:intergenic
AATCAAATGACGAATCCTGA+TGG 0.539467 8_2:+21269216 Msa1239510:CDS
GTCCATATCTCCAATCTGAA+TGG 0.540037 8_2:-21269325 None:intergenic
TTGTTCTTGAAGGATGATGA+TGG 0.545002 8_2:-21268768 None:intergenic
TGTCCGGGTAACCTAGTCTC+TGG 0.551902 8_2:-21269156 None:intergenic
TTGAGGGTGTCTTGTAGGCA+CGG 0.553474 8_2:-21268864 None:intergenic
TACCAGTGTTGGACATGATG+TGG 0.554021 8_2:+21270035 Msa1239510:CDS
TGGGTATGGTGGAGACATCA+TGG 0.554451 8_2:+21270165 Msa1239510:CDS
GTTGGACATGATGTGGGCCA+TGG 0.554890 8_2:+21270042 Msa1239510:CDS
GGTCAACCATATCAATATTG+TGG 0.557103 8_2:-21270267 None:intergenic
GTGGGGTCCAGGTTGAAGCT+AGG 0.557168 8_2:+21270227 Msa1239510:CDS
CATAAAGATAACACCTCGAT+GGG 0.558427 8_2:-21269266 None:intergenic
TGCAAACATTGTGTTCAATA+CGG 0.560159 8_2:+21269302 Msa1239510:CDS
GTGCGGTTATAAATATTGCA+AGG 0.561146 8_2:+21270302 Msa1239510:CDS
AGCGTAGGTTACTTAAGCAT+GGG 0.562348 8_2:+21270425 Msa1239510:three_prime_UTR
ATGTAAGTTTGGTGCAGCGT+AGG 0.563718 8_2:+21270410 Msa1239510:three_prime_UTR
GGATTGAGTTTCAATCCTGA+CGG 0.564876 8_2:+21268832 Msa1239510:CDS
TGAAGGTTCGGGGTTCGCGT+CGG 0.566328 8_2:-21268887 None:intergenic
AGTCTCTGGCGCCCAACGAA+AGG 0.566700 8_2:-21269142 None:intergenic
CGAGCATCTTGATATTGTCC+GGG 0.569073 8_2:-21269171 None:intergenic
GCACGGTGGAGAGTTCCGTC+AGG 0.576931 8_2:-21268847 None:intergenic
TAACCGCACTAGCTCTAGTA+GGG 0.577127 8_2:-21270288 None:intergenic
TGGTTGGGTCATCCTAAGCC+CGG 0.577877 8_2:+21269050 Msa1239510:CDS
ATCATGTCCAACACTGGTAA+GGG 0.578520 8_2:-21270031 None:intergenic
TCAATATTGTGGAACCCCAC+AGG 0.582193 8_2:-21270256 None:intergenic
CCATAAAGATAACACCTCGA+TGG 0.586600 8_2:-21269267 None:intergenic
GCCCACATCATGTCCAACAC+TGG 0.603571 8_2:-21270037 None:intergenic
GCGCCAGAGACTAGGTTACC+CGG 0.604483 8_2:+21269153 Msa1239510:CDS
TGCGGTTATAAATATTGCAA+GGG 0.608893 8_2:+21270303 Msa1239510:CDS
GGGCCATGGCTTTGCCTACG+GGG 0.610243 8_2:+21270056 Msa1239510:CDS
CGGGGACAAATCGTGACCAT+AGG 0.613124 8_2:+21270074 Msa1239510:CDS
AAGCTAGGTTTGATCCTGTG+GGG 0.615240 8_2:+21270242 Msa1239510:CDS
CCATAGGTATTGCAATCCAA+TGG 0.617062 8_2:+21270090 Msa1239510:CDS
ACATAGGTTGATTCATAACA+AGG 0.617116 8_2:-21269371 None:intergenic
GATCAAACCTAGCTTCAACC+TGG 0.619274 8_2:-21270234 None:intergenic
GAACCCCGAACCTTCACCGG+GGG 0.629310 8_2:+21268894 Msa1239510:CDS
ACCAGTGTTGGACATGATGT+GGG 0.635087 8_2:+21270036 Msa1239510:CDS
ACAAGAATTTGTGACCATGT+TGG 0.638031 8_2:+21270198 Msa1239510:CDS
TTGGACACCGTAGAAACCCC+CGG 0.639060 8_2:-21268910 None:intergenic
GATTGAAACTCAATCCAAAG+TGG 0.656440 8_2:-21268825 None:intergenic
TGTCCCCGTAGGCAAAGCCA+TGG 0.658805 8_2:-21270059 None:intergenic
GACCATGTTGGTCAAATGTG+GGG 0.660571 8_2:+21270210 Msa1239510:CDS
GCGTAGGTTACTTAAGCATG+GGG 0.671820 8_2:+21270426 Msa1239510:three_prime_UTR
TGACCCTACTAGAGCTAGTG+CGG 0.675155 8_2:+21270285 Msa1239510:CDS
TGGTCACGATTTGTCCCCGT+AGG 0.679424 8_2:-21270070 None:intergenic
AAAATGTCAAGAAATTAGGG+AGG 0.680447 8_2:+21270131 Msa1239510:CDS
CGAATCCTGATGGAGAGCAA+TGG 0.687815 8_2:+21269226 Msa1239510:CDS
GACCCCACATTTGACCAACA+TGG 0.691227 8_2:-21270212 None:intergenic
GAGACTATGGTGACCCATCG+AGG 0.705564 8_2:+21269253 Msa1239510:CDS
ACCATCAAACGACAATACCG+TGG 0.707154 8_2:+21268993 Msa1239510:CDS
AGGGTGTCTTGTAGGCACGG+TGG 0.724739 8_2:-21268861 None:intergenic
CGAACCCCGAACCTTCACCG+GGG 0.774672 8_2:+21268893 Msa1239510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTTTGACATTATTTT+TGG - chr8_2:21268796-21268815 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - chr8_2:21269027-21269046 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + chr8_2:21269027-21269046 Msa1239510:CDS 15.0%
!!! ATTTCATTTTAGTTTTATAG+AGG + chr8_2:21269772-21269791 Msa1239510:intron 15.0%
!! TAAAATTTCAAACATCTATA+AGG - chr8_2:21269834-21269853 None:intergenic 15.0%
!!! TCAAATTTTGACATTATTTT+TGG - chr8_2:21268796-21268815 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - chr8_2:21269027-21269046 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + chr8_2:21269027-21269046 Msa1239510:CDS 15.0%
!!! ATTTCATTTTAGTTTTATAG+AGG + chr8_2:21269772-21269791 Msa1239510:intron 15.0%
!! TAAAATTTCAAACATCTATA+AGG - chr8_2:21269834-21269853 None:intergenic 15.0%
!!! TTGATGATGAGAAAAAAATA+TGG + chr8_2:21268944-21268963 Msa1239510:CDS 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + chr8_2:21268945-21268964 Msa1239510:CDS 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - chr8_2:21269088-21269107 None:intergenic 20.0%
!!! AAAATATATCTTGACTTGTT+TGG + chr8_2:21269523-21269542 Msa1239510:intron 20.0%
!!! TTGATGATGAGAAAAAAATA+TGG + chr8_2:21268944-21268963 Msa1239510:CDS 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + chr8_2:21268945-21268964 Msa1239510:CDS 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - chr8_2:21269088-21269107 None:intergenic 20.0%
!!! AAAATATATCTTGACTTGTT+TGG + chr8_2:21269523-21269542 Msa1239510:intron 20.0%
!!! ATTTTTGGTTTTGTTCTTGA+AGG - chr8_2:21268781-21268800 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - chr8_2:21268932-21268951 None:intergenic 25.0%
! TTGATTTACTTTCATAATGG+TGG + chr8_2:21269030-21269049 Msa1239510:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - chr8_2:21269089-21269108 None:intergenic 25.0%
! AATTTCAAACATCTATAAGG+TGG - chr8_2:21269831-21269850 None:intergenic 25.0%
! CAAAATTACTCATTATCATG+TGG + chr8_2:21269915-21269934 Msa1239510:intron 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + chr8_2:21269987-21270006 Msa1239510:intron 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + chr8_2:21270127-21270146 Msa1239510:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + chr8_2:21270128-21270147 Msa1239510:CDS 25.0%
!! GAGTTTTTGTCATGATTAAT+TGG + chr8_2:21270341-21270360 Msa1239510:exon 25.0%
! CTGGATTATTAATGTAAGTT+TGG + chr8_2:21270399-21270418 Msa1239510:three_prime_UTR 25.0%
!!! GATAGTGAATTTTGATTTAG+CGG - chr8_2:21268724-21268743 None:intergenic 25.0%
!!! ATTTTTGGTTTTGTTCTTGA+AGG - chr8_2:21268781-21268800 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - chr8_2:21268932-21268951 None:intergenic 25.0%
! TTGATTTACTTTCATAATGG+TGG + chr8_2:21269030-21269049 Msa1239510:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - chr8_2:21269089-21269108 None:intergenic 25.0%
! AATTTCAAACATCTATAAGG+TGG - chr8_2:21269831-21269850 None:intergenic 25.0%
! CAAAATTACTCATTATCATG+TGG + chr8_2:21269915-21269934 Msa1239510:intron 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + chr8_2:21269987-21270006 Msa1239510:intron 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + chr8_2:21270127-21270146 Msa1239510:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + chr8_2:21270128-21270147 Msa1239510:CDS 25.0%
!! GAGTTTTTGTCATGATTAAT+TGG + chr8_2:21270341-21270360 Msa1239510:exon 25.0%
! CTGGATTATTAATGTAAGTT+TGG + chr8_2:21270399-21270418 Msa1239510:three_prime_UTR 25.0%
TTTGATCCATATAACCACTT+TGG + chr8_2:21268811-21268830 Msa1239510:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + chr8_2:21268959-21268978 Msa1239510:CDS 30.0%
TTTACTTTCATAATGGTGGT+TGG + chr8_2:21269034-21269053 Msa1239510:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + chr8_2:21269035-21269054 Msa1239510:CDS 30.0%
TGCAAACATTGTGTTCAATA+CGG + chr8_2:21269302-21269321 Msa1239510:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG - chr8_2:21269374-21269393 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + chr8_2:21269378-21269397 Msa1239510:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - chr8_2:21269418-21269437 None:intergenic 30.0%
GAGAATAACACATATCTCTT+TGG + chr8_2:21269493-21269512 Msa1239510:intron 30.0%
! GTAAGTTCCTGCTATAATTT+TGG + chr8_2:21269634-21269653 Msa1239510:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - chr8_2:21269686-21269705 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - chr8_2:21269812-21269831 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + chr8_2:21269850-21269869 Msa1239510:intron 30.0%
TTGATTCAAAGAGATTAAGG+TGG - chr8_2:21269893-21269912 None:intergenic 30.0%
GTCTTGATTCAAAGAGATTA+AGG - chr8_2:21269896-21269915 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - chr8_2:21270124-21270143 None:intergenic 30.0%
AAAATGTCAAGAAATTAGGG+AGG + chr8_2:21270131-21270150 Msa1239510:CDS 30.0%
TGCGGTTATAAATATTGCAA+GGG + chr8_2:21270303-21270322 Msa1239510:CDS 30.0%
TCTTTGTATTTCTCTTAGTC+TGG + chr8_2:21270380-21270399 Msa1239510:three_prime_UTR 30.0%
TTTGATCCATATAACCACTT+TGG + chr8_2:21268811-21268830 Msa1239510:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + chr8_2:21268959-21268978 Msa1239510:CDS 30.0%
TTTACTTTCATAATGGTGGT+TGG + chr8_2:21269034-21269053 Msa1239510:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + chr8_2:21269035-21269054 Msa1239510:CDS 30.0%
TGCAAACATTGTGTTCAATA+CGG + chr8_2:21269302-21269321 Msa1239510:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG - chr8_2:21269374-21269393 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + chr8_2:21269378-21269397 Msa1239510:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - chr8_2:21269418-21269437 None:intergenic 30.0%
GAGAATAACACATATCTCTT+TGG + chr8_2:21269493-21269512 Msa1239510:intron 30.0%
! GTAAGTTCCTGCTATAATTT+TGG + chr8_2:21269634-21269653 Msa1239510:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - chr8_2:21269686-21269705 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - chr8_2:21269812-21269831 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + chr8_2:21269850-21269869 Msa1239510:intron 30.0%
TTGATTCAAAGAGATTAAGG+TGG - chr8_2:21269893-21269912 None:intergenic 30.0%
GTCTTGATTCAAAGAGATTA+AGG - chr8_2:21269896-21269915 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - chr8_2:21270124-21270143 None:intergenic 30.0%
AAAATGTCAAGAAATTAGGG+AGG + chr8_2:21270131-21270150 Msa1239510:CDS 30.0%
TGCGGTTATAAATATTGCAA+GGG + chr8_2:21270303-21270322 Msa1239510:CDS 30.0%
TCTTTGTATTTCTCTTAGTC+TGG + chr8_2:21270380-21270399 Msa1239510:three_prime_UTR 30.0%
TTGTTCTTGAAGGATGATGA+TGG - chr8_2:21268771-21268790 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - chr8_2:21268820-21268839 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - chr8_2:21268828-21268847 None:intergenic 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - chr8_2:21268985-21269004 None:intergenic 35.0%
AATCAAATGACGAATCCTGA+TGG + chr8_2:21269216-21269235 Msa1239510:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - chr8_2:21269269-21269288 None:intergenic 35.0%
! AGGTGTTATCTTTATGGATG+TGG + chr8_2:21269273-21269292 Msa1239510:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG + chr8_2:21269279-21269298 Msa1239510:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - chr8_2:21269390-21269409 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + chr8_2:21269388-21269407 Msa1239510:CDS 35.0%
CATCAAGCCAAAATTATAGC+AGG - chr8_2:21269644-21269663 None:intergenic 35.0%
!!! GCTATAATTTTGGCTTGATG+TGG + chr8_2:21269644-21269663 Msa1239510:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + chr8_2:21269650-21269669 Msa1239510:intron 35.0%
GAGAAATCAAGAGACAAATG+AGG - chr8_2:21269729-21269748 None:intergenic 35.0%
TGTTGATCCAATGTTTGGTT+TGG - chr8_2:21269860-21269879 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - chr8_2:21269865-21269884 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + chr8_2:21269997-21270016 Msa1239510:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG + chr8_2:21270097-21270116 Msa1239510:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + chr8_2:21270198-21270217 Msa1239510:CDS 35.0%
GGTCAACCATATCAATATTG+TGG - chr8_2:21270270-21270289 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG + chr8_2:21270302-21270321 Msa1239510:CDS 35.0%
TTGTTCTTGAAGGATGATGA+TGG - chr8_2:21268771-21268790 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - chr8_2:21268820-21268839 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - chr8_2:21268828-21268847 None:intergenic 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - chr8_2:21268985-21269004 None:intergenic 35.0%
AATCAAATGACGAATCCTGA+TGG + chr8_2:21269216-21269235 Msa1239510:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - chr8_2:21269269-21269288 None:intergenic 35.0%
! AGGTGTTATCTTTATGGATG+TGG + chr8_2:21269273-21269292 Msa1239510:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG + chr8_2:21269279-21269298 Msa1239510:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - chr8_2:21269390-21269409 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + chr8_2:21269388-21269407 Msa1239510:CDS 35.0%
CATCAAGCCAAAATTATAGC+AGG - chr8_2:21269644-21269663 None:intergenic 35.0%
!!! GCTATAATTTTGGCTTGATG+TGG + chr8_2:21269644-21269663 Msa1239510:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + chr8_2:21269650-21269669 Msa1239510:intron 35.0%
GAGAAATCAAGAGACAAATG+AGG - chr8_2:21269729-21269748 None:intergenic 35.0%
TGTTGATCCAATGTTTGGTT+TGG - chr8_2:21269860-21269879 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - chr8_2:21269865-21269884 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + chr8_2:21269997-21270016 Msa1239510:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG + chr8_2:21270097-21270116 Msa1239510:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + chr8_2:21270198-21270217 Msa1239510:CDS 35.0%
GGTCAACCATATCAATATTG+TGG - chr8_2:21270270-21270289 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG + chr8_2:21270302-21270321 Msa1239510:CDS 35.0%
GGATTGAGTTTCAATCCTGA+CGG + chr8_2:21268832-21268851 Msa1239510:CDS 40.0%
TCGAGCATCTTGATATTGTC+CGG - chr8_2:21269175-21269194 None:intergenic 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + chr8_2:21269187-21269206 Msa1239510:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + chr8_2:21269188-21269207 Msa1239510:CDS 40.0%
CCATAAAGATAACACCTCGA+TGG - chr8_2:21269270-21269289 None:intergenic 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + chr8_2:21269267-21269286 Msa1239510:CDS 40.0%
TTCAATACGGCCATTCAGAT+TGG + chr8_2:21269315-21269334 Msa1239510:CDS 40.0%
GTCCATATCTCCAATCTGAA+TGG - chr8_2:21269328-21269347 None:intergenic 40.0%
ATATGGACTTAGAGCCTCTA+AGG + chr8_2:21269340-21269359 Msa1239510:CDS 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + chr8_2:21269348-21269367 Msa1239510:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + chr8_2:21269392-21269411 Msa1239510:CDS 40.0%
! ACAAGTTTTCTCGTGTCTCA+AGG + chr8_2:21269558-21269577 Msa1239510:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG - chr8_2:21270034-21270053 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - chr8_2:21270093-21270112 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + chr8_2:21270090-21270109 Msa1239510:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - chr8_2:21270109-21270128 None:intergenic 40.0%
AATGGCAAAAGGACCACATT+TGG + chr8_2:21270108-21270127 Msa1239510:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + chr8_2:21270145-21270164 Msa1239510:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + chr8_2:21270146-21270165 Msa1239510:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + chr8_2:21270151-21270170 Msa1239510:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + chr8_2:21270154-21270173 Msa1239510:CDS 40.0%
TGACCATGTTGGTCAAATGT+GGG + chr8_2:21270209-21270228 Msa1239510:CDS 40.0%
GGGGTTCCACAATATTGATA+TGG + chr8_2:21270261-21270280 Msa1239510:CDS 40.0%
AGCGTAGGTTACTTAAGCAT+GGG + chr8_2:21270425-21270444 Msa1239510:three_prime_UTR 40.0%
GGATTGAGTTTCAATCCTGA+CGG + chr8_2:21268832-21268851 Msa1239510:CDS 40.0%
TCGAGCATCTTGATATTGTC+CGG - chr8_2:21269175-21269194 None:intergenic 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + chr8_2:21269187-21269206 Msa1239510:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + chr8_2:21269188-21269207 Msa1239510:CDS 40.0%
CCATAAAGATAACACCTCGA+TGG - chr8_2:21269270-21269289 None:intergenic 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + chr8_2:21269267-21269286 Msa1239510:CDS 40.0%
TTCAATACGGCCATTCAGAT+TGG + chr8_2:21269315-21269334 Msa1239510:CDS 40.0%
GTCCATATCTCCAATCTGAA+TGG - chr8_2:21269328-21269347 None:intergenic 40.0%
ATATGGACTTAGAGCCTCTA+AGG + chr8_2:21269340-21269359 Msa1239510:CDS 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + chr8_2:21269348-21269367 Msa1239510:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + chr8_2:21269392-21269411 Msa1239510:CDS 40.0%
! ACAAGTTTTCTCGTGTCTCA+AGG + chr8_2:21269558-21269577 Msa1239510:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG - chr8_2:21270034-21270053 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - chr8_2:21270093-21270112 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + chr8_2:21270090-21270109 Msa1239510:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - chr8_2:21270109-21270128 None:intergenic 40.0%
AATGGCAAAAGGACCACATT+TGG + chr8_2:21270108-21270127 Msa1239510:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + chr8_2:21270145-21270164 Msa1239510:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + chr8_2:21270146-21270165 Msa1239510:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + chr8_2:21270151-21270170 Msa1239510:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + chr8_2:21270154-21270173 Msa1239510:CDS 40.0%
TGACCATGTTGGTCAAATGT+GGG + chr8_2:21270209-21270228 Msa1239510:CDS 40.0%
GGGGTTCCACAATATTGATA+TGG + chr8_2:21270261-21270280 Msa1239510:CDS 40.0%
AGCGTAGGTTACTTAAGCAT+GGG + chr8_2:21270425-21270444 Msa1239510:three_prime_UTR 40.0%
ACCATCAAACGACAATACCG+TGG + chr8_2:21268993-21269012 Msa1239510:CDS 45.0%
GCGACAGAGACAACAATACT+AGG - chr8_2:21269123-21269142 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+GGG - chr8_2:21269174-21269193 None:intergenic 45.0%
GAGCAATGGTTGAGAGACTA+TGG + chr8_2:21269240-21269259 Msa1239510:CDS 45.0%
GGCCATTCAGATTGGAGATA+TGG + chr8_2:21269323-21269342 Msa1239510:CDS 45.0%
ACAAGGCCACTAATCCTTAG+AGG - chr8_2:21269357-21269376 None:intergenic 45.0%
!! TGACTTGTTTGGATGTGCGA+TGG + chr8_2:21269534-21269553 Msa1239510:intron 45.0%
CATCATGTCCAACACTGGTA+AGG - chr8_2:21270035-21270054 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG + chr8_2:21270035-21270054 Msa1239510:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + chr8_2:21270036-21270055 Msa1239510:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + chr8_2:21270208-21270227 Msa1239510:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + chr8_2:21270210-21270229 Msa1239510:CDS 45.0%
GATCAAACCTAGCTTCAACC+TGG - chr8_2:21270237-21270256 None:intergenic 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + chr8_2:21270240-21270259 Msa1239510:CDS 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + chr8_2:21270241-21270260 Msa1239510:CDS 45.0%
AAGCTAGGTTTGATCCTGTG+GGG + chr8_2:21270242-21270261 Msa1239510:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG - chr8_2:21270259-21270278 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - chr8_2:21270291-21270310 None:intergenic 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - chr8_2:21270292-21270311 None:intergenic 45.0%
!! ATGTAAGTTTGGTGCAGCGT+AGG + chr8_2:21270410-21270429 Msa1239510:three_prime_UTR 45.0%
CAGCGTAGGTTACTTAAGCA+TGG + chr8_2:21270424-21270443 Msa1239510:three_prime_UTR 45.0%
GCGTAGGTTACTTAAGCATG+GGG + chr8_2:21270426-21270445 Msa1239510:three_prime_UTR 45.0%
ACCATCAAACGACAATACCG+TGG + chr8_2:21268993-21269012 Msa1239510:CDS 45.0%
GCGACAGAGACAACAATACT+AGG - chr8_2:21269123-21269142 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+GGG - chr8_2:21269174-21269193 None:intergenic 45.0%
GAGCAATGGTTGAGAGACTA+TGG + chr8_2:21269240-21269259 Msa1239510:CDS 45.0%
GGCCATTCAGATTGGAGATA+TGG + chr8_2:21269323-21269342 Msa1239510:CDS 45.0%
ACAAGGCCACTAATCCTTAG+AGG - chr8_2:21269357-21269376 None:intergenic 45.0%
!! TGACTTGTTTGGATGTGCGA+TGG + chr8_2:21269534-21269553 Msa1239510:intron 45.0%
CATCATGTCCAACACTGGTA+AGG - chr8_2:21270035-21270054 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG + chr8_2:21270035-21270054 Msa1239510:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + chr8_2:21270036-21270055 Msa1239510:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + chr8_2:21270208-21270227 Msa1239510:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + chr8_2:21270210-21270229 Msa1239510:CDS 45.0%
GATCAAACCTAGCTTCAACC+TGG - chr8_2:21270237-21270256 None:intergenic 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + chr8_2:21270240-21270259 Msa1239510:CDS 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + chr8_2:21270241-21270260 Msa1239510:CDS 45.0%
AAGCTAGGTTTGATCCTGTG+GGG + chr8_2:21270242-21270261 Msa1239510:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG - chr8_2:21270259-21270278 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - chr8_2:21270291-21270310 None:intergenic 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - chr8_2:21270292-21270311 None:intergenic 45.0%
!! ATGTAAGTTTGGTGCAGCGT+AGG + chr8_2:21270410-21270429 Msa1239510:three_prime_UTR 45.0%
CAGCGTAGGTTACTTAAGCA+TGG + chr8_2:21270424-21270443 Msa1239510:three_prime_UTR 45.0%
GCGTAGGTTACTTAAGCATG+GGG + chr8_2:21270426-21270445 Msa1239510:three_prime_UTR 45.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - chr8_2:21268867-21268886 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - chr8_2:21268997-21269016 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - chr8_2:21269013-21269032 None:intergenic 50.0%
TTATGGGTACCAGCATCAGC+CGG - chr8_2:21269072-21269091 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + chr8_2:21269130-21269149 Msa1239510:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + chr8_2:21269131-21269150 Msa1239510:CDS 50.0%
CGAATCCTGATGGAGAGCAA+TGG + chr8_2:21269226-21269245 Msa1239510:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - chr8_2:21269234-21269253 None:intergenic 50.0%
AAAGGACGGCCTCGGAAATA+AGG + chr8_2:21269406-21269425 Msa1239510:CDS 50.0%
GGCACTGCACAACCAAACAT+AGG + chr8_2:21269671-21269690 Msa1239510:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - chr8_2:21270005-21270024 None:intergenic 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - chr8_2:21270024-21270043 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + chr8_2:21270024-21270043 Msa1239510:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG + chr8_2:21270165-21270184 Msa1239510:CDS 50.0%
GACCCCACATTTGACCAACA+TGG - chr8_2:21270215-21270234 None:intergenic 50.0%
TGACCCTACTAGAGCTAGTG+CGG + chr8_2:21270285-21270304 Msa1239510:CDS 50.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - chr8_2:21268867-21268886 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - chr8_2:21268997-21269016 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - chr8_2:21269013-21269032 None:intergenic 50.0%
TTATGGGTACCAGCATCAGC+CGG - chr8_2:21269072-21269091 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + chr8_2:21269130-21269149 Msa1239510:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + chr8_2:21269131-21269150 Msa1239510:CDS 50.0%
CGAATCCTGATGGAGAGCAA+TGG + chr8_2:21269226-21269245 Msa1239510:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - chr8_2:21269234-21269253 None:intergenic 50.0%
AAAGGACGGCCTCGGAAATA+AGG + chr8_2:21269406-21269425 Msa1239510:CDS 50.0%
GGCACTGCACAACCAAACAT+AGG + chr8_2:21269671-21269690 Msa1239510:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - chr8_2:21270005-21270024 None:intergenic 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - chr8_2:21270024-21270043 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + chr8_2:21270024-21270043 Msa1239510:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG + chr8_2:21270165-21270184 Msa1239510:CDS 50.0%
GACCCCACATTTGACCAACA+TGG - chr8_2:21270215-21270234 None:intergenic 50.0%
TGACCCTACTAGAGCTAGTG+CGG + chr8_2:21270285-21270304 Msa1239510:CDS 50.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - chr8_2:21268872-21268891 None:intergenic 55.0%
AGAAACCCCCGGTGAAGGTT+CGG - chr8_2:21268902-21268921 None:intergenic 55.0%
ACCTTCACCGGGGGTTTCTA+CGG + chr8_2:21268903-21268922 Msa1239510:CDS 55.0%
TTGGACACCGTAGAAACCCC+CGG - chr8_2:21268913-21268932 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + chr8_2:21269050-21269069 Msa1239510:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - chr8_2:21269071-21269090 None:intergenic 55.0%
TGTCCGGGTAACCTAGTCTC+TGG - chr8_2:21269159-21269178 None:intergenic 55.0%
GAGACTATGGTGACCCATCG+AGG + chr8_2:21269253-21269272 Msa1239510:CDS 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + chr8_2:21269398-21269417 Msa1239510:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - chr8_2:21270040-21270059 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + chr8_2:21270042-21270061 Msa1239510:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - chr8_2:21270073-21270092 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + chr8_2:21270074-21270093 Msa1239510:CDS 55.0%
GTTGGTCAAATGTGGGGTCC+AGG + chr8_2:21270216-21270235 Msa1239510:CDS 55.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - chr8_2:21268872-21268891 None:intergenic 55.0%
AGAAACCCCCGGTGAAGGTT+CGG - chr8_2:21268902-21268921 None:intergenic 55.0%
ACCTTCACCGGGGGTTTCTA+CGG + chr8_2:21268903-21268922 Msa1239510:CDS 55.0%
TTGGACACCGTAGAAACCCC+CGG - chr8_2:21268913-21268932 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + chr8_2:21269050-21269069 Msa1239510:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - chr8_2:21269071-21269090 None:intergenic 55.0%
TGTCCGGGTAACCTAGTCTC+TGG - chr8_2:21269159-21269178 None:intergenic 55.0%
GAGACTATGGTGACCCATCG+AGG + chr8_2:21269253-21269272 Msa1239510:CDS 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + chr8_2:21269398-21269417 Msa1239510:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - chr8_2:21270040-21270059 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + chr8_2:21270042-21270061 Msa1239510:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - chr8_2:21270073-21270092 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + chr8_2:21270074-21270093 Msa1239510:CDS 55.0%
GTTGGTCAAATGTGGGGTCC+AGG + chr8_2:21270216-21270235 Msa1239510:CDS 55.0%
! AGGGTGTCTTGTAGGCACGG+TGG - chr8_2:21268864-21268883 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - chr8_2:21268890-21268909 None:intergenic 60.0%
AAACCCCCGGTGAAGGTTCG+GGG - chr8_2:21268900-21268919 None:intergenic 60.0%
GAAACCCCCGGTGAAGGTTC+GGG - chr8_2:21268901-21268920 None:intergenic 60.0%
ACCGTAGAAACCCCCGGTGA+AGG - chr8_2:21268907-21268926 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + chr8_2:21269060-21269079 Msa1239510:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - chr8_2:21269065-21269084 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - chr8_2:21269145-21269164 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + chr8_2:21269145-21269164 Msa1239510:CDS 60.0%
GCGCCAGAGACTAGGTTACC+CGG + chr8_2:21269153-21269172 Msa1239510:CDS 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + chr8_2:21270054-21270073 Msa1239510:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + chr8_2:21270055-21270074 Msa1239510:CDS 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - chr8_2:21270062-21270081 None:intergenic 60.0%
! GTGGGGTCCAGGTTGAAGCT+AGG + chr8_2:21270227-21270246 Msa1239510:CDS 60.0%
! AGGGTGTCTTGTAGGCACGG+TGG - chr8_2:21268864-21268883 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - chr8_2:21268890-21268909 None:intergenic 60.0%
AAACCCCCGGTGAAGGTTCG+GGG - chr8_2:21268900-21268919 None:intergenic 60.0%
GAAACCCCCGGTGAAGGTTC+GGG - chr8_2:21268901-21268920 None:intergenic 60.0%
ACCGTAGAAACCCCCGGTGA+AGG - chr8_2:21268907-21268926 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + chr8_2:21269060-21269079 Msa1239510:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - chr8_2:21269065-21269084 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - chr8_2:21269145-21269164 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + chr8_2:21269145-21269164 Msa1239510:CDS 60.0%
GCGCCAGAGACTAGGTTACC+CGG + chr8_2:21269153-21269172 Msa1239510:CDS 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + chr8_2:21270054-21270073 Msa1239510:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + chr8_2:21270055-21270074 Msa1239510:CDS 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - chr8_2:21270062-21270081 None:intergenic 60.0%
! GTGGGGTCCAGGTTGAAGCT+AGG + chr8_2:21270227-21270246 Msa1239510:CDS 60.0%
GCACGGTGGAGAGTTCCGTC+AGG - chr8_2:21268850-21268869 None:intergenic 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - chr8_2:21268883-21268902 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - chr8_2:21268884-21268903 None:intergenic 65.0%
CGCGAACCCCGAACCTTCAC+CGG + chr8_2:21268891-21268910 Msa1239510:CDS 65.0%
GCGAACCCCGAACCTTCACC+GGG + chr8_2:21268892-21268911 Msa1239510:CDS 65.0%
CGAACCCCGAACCTTCACCG+GGG + chr8_2:21268893-21268912 Msa1239510:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + chr8_2:21268894-21268913 Msa1239510:CDS 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + chr8_2:21270056-21270075 Msa1239510:CDS 65.0%
GCACGGTGGAGAGTTCCGTC+AGG - chr8_2:21268850-21268869 None:intergenic 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - chr8_2:21268883-21268902 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - chr8_2:21268884-21268903 None:intergenic 65.0%
CGCGAACCCCGAACCTTCAC+CGG + chr8_2:21268891-21268910 Msa1239510:CDS 65.0%
GCGAACCCCGAACCTTCACC+GGG + chr8_2:21268892-21268911 Msa1239510:CDS 65.0%
CGAACCCCGAACCTTCACCG+GGG + chr8_2:21268893-21268912 Msa1239510:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + chr8_2:21268894-21268913 Msa1239510:CDS 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + chr8_2:21270056-21270075 Msa1239510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 21268722 21270479 21268722 ID=Msa1239510;Name=Msa1239510
chr8_2 mRNA 21268722 21270479 21268722 ID=Msa1239510-mRNA-1;Parent=Msa1239510;Name=Msa1239510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=80|1|1|1|1|1|2|137|319
chr8_2 exon 21268722 21269427 21268722 ID=Msa1239510-mRNA-1:exon:7614;Parent=Msa1239510-mRNA-1
chr8_2 exon 21270009 21270479 21270009 ID=Msa1239510-mRNA-1:exon:7615;Parent=Msa1239510-mRNA-1
chr8_2 five_prime_UTR 21268722 21268801 21268722 ID=Msa1239510-mRNA-1:five_prime_utr;Parent=Msa1239510-mRNA-1
chr8_2 CDS 21268802 21269427 21268802 ID=Msa1239510-mRNA-1:cds;Parent=Msa1239510-mRNA-1
chr8_2 CDS 21270009 21270342 21270009 ID=Msa1239510-mRNA-1:cds;Parent=Msa1239510-mRNA-1
chr8_2 three_prime_UTR 21270343 21270479 21270343 ID=Msa1239510-mRNA-1:three_prime_utr;Parent=Msa1239510-mRNA-1
Gene Sequence

>Msa1239510

ATGTCAAAATTTGATCCATATAACCACTTTGGATTGAGTTTCAATCCTGACGGAACTCTCCACCGTGCCTACAAGACACCCTCAACCGACGCGAACCCCGAACCTTCACCGGGGGTTTCTACGGTGTCCAAAGACATAACAATTGATGATGAGAAAAAAATATGGGTTCGAATTTTCAGGCCAACAAAACTACCATCAAACGACAATACCGTGGCGCGTTTACCGATATTGATTTACTTTCATAATGGTGGTTGGGTCATCCTAAGCCCGGCTGATGCTGGTACCCATAAAAAATGTTCGAATCTTGCTTCTGACATTCCTAGTATTGTTGTCTCTGTCGCCTTTCGTTGGGCGCCAGAGACTAGGTTACCCGGACAATATCAAGATGCTCGAGATGCTATTTTGTGGGTGAAAAATCAAATGACGAATCCTGATGGAGAGCAATGGTTGAGAGACTATGGTGACCCATCGAGGTGTTATCTTTATGGATGTGGTTGTGGTGCAAACATTGTGTTCAATACGGCCATTCAGATTGGAGATATGGACTTAGAGCCTCTAAGGATTAGTGGCCTTGTTATGAATCAACCTATGTTTTCTGGAGAGAAAAGGACGGCCTCGGAAATAAGGTTTGCAACGGACCAGACTTTGCCCTTACCAGTGTTGGACATGATGTGGGCCATGGCTTTGCCTACGGGGACAAATCGTGACCATAGGTATTGCAATCCAATGGCAAAAGGACCACATTTGGAAAATGTCAAGAAATTAGGGAGGTGTCTTGTTATTGGGTATGGTGGAGACATCATGGTTGATCGACAACAAGAATTTGTGACCATGTTGGTCAAATGTGGGGTCCAGGTTGAAGCTAGGTTTGATCCTGTGGGGTTCCACAATATTGATATGGTTGACCCTACTAGAGCTAGTGCGGTTATAAATATTGCAAGGGAGTTTATTATACTTTGA
Protein sequence

>Msa1239510

MSKFDPYNHFGLSFNPDGTLHRAYKTPSTDANPEPSPGVSTVSKDITIDDEKKIWVRIFRPTKLPSNDNTVARLPILIYFHNGGWVILSPADAGTHKKCSNLASDIPSIVVSVAFRWAPETRLPGQYQDARDAILWVKNQMTNPDGEQWLRDYGDPSRCYLYGCGCGANIVFNTAIQIGDMDLEPLRISGLVMNQPMFSGEKRTASEIRFATDQTLPLPVLDMMWAMALPTGTNRDHRYCNPMAKGPHLENVKKLGRCLVIGYGGDIMVDRQQEFVTMLVKCGVQVEARFDPVGFHNIDMVDPTRASAVINIAREFIIL*