AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1320100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320100 MtrunA17_Chr8g0351171 96.238 319 12 0 1 319 1 319 0.0 648
Msa1320100 MtrunA17_Chr8g0351211 40.881 318 182 4 5 318 2 317 1.70e-90 273
Msa1320100 MtrunA17_Chr8g0351201 42.138 318 178 4 2 317 11 324 3.41e-90 272
Msa1320100 MtrunA17_Chr6g0474411 39.375 320 180 5 4 317 15 326 2.01e-82 252
Msa1320100 MtrunA17_Chr6g0474491 36.250 320 190 5 5 317 12 324 1.11e-72 227
Msa1320100 MtrunA17_Chr6g0474471 35.312 320 193 6 5 317 13 325 1.82e-71 224
Msa1320100 MtrunA17_Chr1g0204211 37.855 317 182 5 2 313 28 334 2.30e-71 224
Msa1320100 MtrunA17_Chr1g0204201 37.037 324 187 6 4 318 11 326 1.70e-70 222
Msa1320100 MtrunA17_Chr6g0474541 37.742 310 181 6 5 310 41 342 7.57e-69 218
Msa1320100 MtrunA17_Chr6g0474631 35.577 312 181 9 15 317 24 324 4.87e-64 205
Msa1320100 MtrunA17_Chr7g0214851 33.910 289 177 5 12 288 29 315 8.81e-52 174
Msa1320100 MtrunA17_Chr6g0477231 32.414 290 176 5 10 287 23 304 3.83e-44 154
Msa1320100 MtrunA17_Chr1g0210121 31.818 308 188 10 12 309 34 329 4.61e-44 154
Msa1320100 MtrunA17_Chr6g0477161 34.831 267 155 6 29 287 48 303 1.22e-42 155
Msa1320100 MtrunA17_Chr6g0477161 32.143 280 173 6 17 287 381 652 2.12e-40 149
Msa1320100 MtrunA17_Chr7g0268091 31.447 318 192 11 12 318 15 317 4.86e-41 145
Msa1320100 MtrunA17_Chr6g0477251 29.618 314 204 6 13 317 582 887 1.74e-39 147
Msa1320100 MtrunA17_Chr6g0477251 28.981 314 206 6 13 317 28 333 2.76e-39 147
Msa1320100 MtrunA17_Chr6g0477271 34.109 258 158 5 32 287 73 320 5.69e-39 140
Msa1320100 MtrunA17_Chr4g0025291 28.070 285 193 5 39 317 37 315 8.65e-37 134
Msa1320100 MtrunA17_Chr4g0045181 31.225 253 164 4 33 283 35 279 1.48e-34 128
Msa1320100 MtrunA17_Chr1g0191301 31.290 310 179 10 8 296 25 321 2.58e-33 125
Msa1320100 MtrunA17_Chr3g0081521 30.627 271 174 5 57 317 74 340 5.18e-33 124
Msa1320100 MtrunA17_Chr6g0474611 36.471 170 98 4 157 317 2 170 7.60e-33 119
Msa1320100 MtrunA17_Chr7g0235741 31.148 244 156 5 43 283 77 311 2.29e-31 120
Msa1320100 MtrunA17_Chr3g0133701 29.537 281 170 8 12 283 15 276 3.99e-31 119
Msa1320100 MtrunA17_Chr4g0045131 30.375 293 183 8 33 317 75 354 4.45e-31 119
Msa1320100 MtrunA17_Chr6g0477241 30.556 216 136 4 17 225 43 251 8.16e-31 117
Msa1320100 MtrunA17_Chr4g0045121 32.099 243 152 5 43 283 48 279 6.04e-30 115
Msa1320100 MtrunA17_Chr7g0259161 32.340 235 144 6 69 296 101 327 8.98e-30 116
Msa1320100 MtrunA17_Chr5g0394251 28.929 280 187 8 17 290 26 299 4.39e-29 114
Msa1320100 MtrunA17_Chr1g0196311 30.822 292 167 10 8 279 41 317 7.40e-29 114
Msa1320100 MtrunA17_Chr4g0045191 28.383 303 178 8 17 314 31 299 3.78e-28 111
Msa1320100 MtrunA17_Chr1g0149271 34.199 231 128 7 17 241 16 228 1.99e-27 108
Msa1320100 MtrunA17_Chr5g0394241 29.924 264 167 8 17 271 22 276 1.16e-25 104
Msa1320100 MtrunA17_Chr1g0205871 31.148 305 180 12 17 301 21 315 3.95e-25 103
Msa1320100 MtrunA17_Chr5g0394211 31.933 238 144 8 17 246 56 283 3.32e-24 101
Msa1320100 MtrunA17_Chr6g0458881 28.906 256 145 7 64 284 147 400 1.33e-23 100
Msa1320100 MtrunA17_Chr7g0228721 29.864 221 116 4 65 246 156 376 1.82e-23 100
Msa1320100 MtrunA17_Chr8g0353951 28.664 307 198 10 17 314 29 323 5.04e-23 97.4
Msa1320100 MtrunA17_Chr3g0095711 30.566 265 162 9 17 271 66 318 5.87e-23 97.8
Msa1320100 MtrunA17_Chr7g0233871 31.136 273 172 11 17 283 25 287 1.16e-21 93.6
Msa1320100 MtrunA17_Chr1g0205781 30.769 273 170 11 17 283 25 284 1.03e-20 90.9
Msa1320100 MtrunA17_Chr1g0205791 30.488 246 153 8 43 283 46 278 8.89e-18 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320100 AT2G45610.1 52.698 315 148 1 4 317 9 323 7.31e-124 358
Msa1320100 AT2G45600.1 40.123 324 166 8 5 317 9 315 1.53e-81 250
Msa1320100 AT5G62180.1 35.404 322 194 6 5 318 9 324 5.86e-69 218
Msa1320100 AT1G68620.1 33.333 261 161 7 17 275 36 285 7.37e-38 137
Msa1320100 AT5G16080.1 30.142 282 182 8 32 307 54 326 1.13e-33 127
Msa1320100 AT5G23530.1 29.617 287 180 8 16 296 34 304 2.14e-33 125
Msa1320100 AT5G06570.1 33.080 263 162 8 40 297 46 299 1.94e-32 123
Msa1320100 AT5G06570.2 33.080 263 162 8 40 297 46 299 1.94e-32 123
Msa1320100 AT5G06570.3 33.080 263 162 8 40 297 61 314 2.13e-32 123
Msa1320100 AT5G06570.4 33.080 263 162 8 40 297 61 314 2.13e-32 123
Msa1320100 AT5G27320.1 28.710 310 186 10 8 296 25 320 6.99e-30 116
Msa1320100 AT3G63010.1 29.139 302 177 10 16 296 37 322 1.81e-28 113
Msa1320100 AT3G05120.1 29.139 302 176 10 8 287 25 310 8.81e-28 110
Msa1320100 AT1G19190.1 28.571 266 167 7 26 283 25 275 3.31e-27 108
Msa1320100 AT3G48690.1 29.730 259 166 6 33 283 32 282 4.72e-26 105
Msa1320100 AT5G14310.1 29.688 256 143 5 65 284 142 396 1.16e-25 106
Msa1320100 AT1G47480.1 28.309 272 175 7 12 281 16 269 1.35e-25 104
Msa1320100 AT2G03550.1 28.231 294 195 6 29 317 28 310 3.04e-25 103
Msa1320100 AT3G27320.2 28.517 263 150 6 58 284 118 378 8.46e-24 101
Msa1320100 AT3G27320.1 28.517 263 150 6 58 284 150 410 1.10e-23 101
Msa1320100 AT1G49640.1 31.319 182 118 3 22 202 21 196 1.37e-23 99.0
Msa1320100 AT1G49650.1 32.979 188 116 4 17 201 74 254 2.72e-23 99.0
Msa1320100 AT1G49660.1 27.407 270 183 6 17 282 18 278 5.44e-23 97.4
Msa1320100 AT3G48700.1 28.431 204 137 4 33 230 32 232 2.47e-22 95.9

Find 112 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAAATGTCAAGAAATT+AGG 0.125161 8_4:+24301656 Msa1320100:CDS
CCATCGAGGTGTTATCTTTA+TGG 0.162050 8_4:+24300799 Msa1320100:CDS
ATCATCAATTGTTATGTCTT+TGG 0.205110 8_4:-24300461 None:intergenic
CTCAATCCAAAGTGGTTATA+TGG 0.248180 8_4:-24300349 None:intergenic
TTAGGGAGGTGTCTTGTTAT+TGG 0.287339 8_4:+24301674 Msa1320100:CDS
TTCGGGGTTCGCGTCGGTTG+AGG 0.309991 8_4:-24300413 None:intergenic
TGGAAAATGTCAAGAAATTA+GGG 0.314810 8_4:+24301657 Msa1320100:CDS
CTGGATTATTAATGTAAGTT+TGG 0.326120 8_4:+24301928 Msa1320100:three_prime_UTR
AAAGGACGGCCTCGGAAATA+AGG 0.329749 8_4:+24300938 Msa1320100:CDS
TAGGGAGGTGTCTTGTTATT+GGG 0.337672 8_4:+24301675 Msa1320100:CDS
TCTTTGTATTTCTCTTAGTC+TGG 0.345016 8_4:+24301909 Msa1320100:three_prime_UTR
AATGGCAAAAGGACCACATT+TGG 0.377354 8_4:+24301637 Msa1320100:CDS
GTCGGTTGAGGGTGTCTTGT+AGG 0.384926 8_4:-24300401 None:intergenic
CGCGAACCCCGAACCTTCAC+CGG 0.388207 8_4:+24300423 Msa1320100:CDS
ATATTGATTTACTTTCATAA+TGG 0.392883 8_4:+24300559 Msa1320100:CDS
ATATGGACTTAGAGCCTCTA+AGG 0.394329 8_4:+24300872 Msa1320100:CDS
TCGGGGTTCGCGTCGGTTGA+GGG 0.394609 8_4:-24300412 None:intergenic
TGGGCCATGGCTTTGCCTAC+GGG 0.409884 8_4:+24301584 Msa1320100:CDS
GGCCATGCAGATTGGAGATA+TGG 0.411498 8_4:+24300855 Msa1320100:CDS
ACAAGGCCACTAATCCTTAG+AGG 0.416771 8_4:-24300886 None:intergenic
GACTTTGCCCTTACCAGTGT+TGG 0.417668 8_4:+24301553 Msa1320100:CDS
TTACTTTCATAATGGTGGTT+GGG 0.428229 8_4:+24300567 Msa1320100:CDS
GTGGGCCATGGCTTTGCCTA+CGG 0.428532 8_4:+24301583 Msa1320100:CDS
ATAACCGCACTAGCTCTAGT+AGG 0.431582 8_4:-24301818 None:intergenic
TTTACTTTCATAATGGTGGT+TGG 0.431824 8_4:+24300566 Msa1320100:CDS
TTTGATCCATATAACCACTT+TGG 0.433703 8_4:+24300343 Msa1320100:CDS
AGGTGTCTTGTTATTGGGTA+TGG 0.434253 8_4:+24301680 Msa1320100:CDS
TATCTTTATGGATGTGGTTG+TGG 0.434607 8_4:+24300811 Msa1320100:CDS
TGTCTCTGTCGCCTTTCGTT+GGG 0.438448 8_4:+24300663 Msa1320100:CDS
CTCAACCATTGCTCTCCATC+AGG 0.438600 8_4:-24300763 None:intergenic
TTATGAAAGTAAATCAATAT+CGG 0.442305 8_4:-24300556 None:intergenic
TCGAGCATCTTGATATTGTC+CGG 0.444661 8_4:-24300704 None:intergenic
ATCCTAAGCCCGGCTGATGC+TGG 0.450512 8_4:+24300592 Msa1320100:CDS
TTGTCTCTGTCGCCTTTCGT+TGG 0.451494 8_4:+24300662 Msa1320100:CDS
CCATTGGATTGCAATACCTA+TGG 0.454707 8_4:-24301619 None:intergenic
TGAAGCTAGGTTTGATCCTG+TGG 0.468258 8_4:+24301769 Msa1320100:CDS
TTAGAGCCTCTAAGGATTAG+TGG 0.468499 8_4:+24300880 Msa1320100:CDS
TTCAATACGGCCATGCAGAT+TGG 0.469246 8_4:+24300847 Msa1320100:CDS
GCCACGGTATTGTCGTTTGA+TGG 0.470251 8_4:-24300526 None:intergenic
TTATGGGTACCAGCATCAGC+CGG 0.476238 8_4:-24300601 None:intergenic
GCGAACCCCGAACCTTCACC+GGG 0.477024 8_4:+24300424 Msa1320100:CDS
GGGGTTCCACAATATTGATA+TGG 0.477353 8_4:+24301790 Msa1320100:CDS
TACCAGCATCAGCCGGGCTT+AGG 0.478525 8_4:-24300594 None:intergenic
GCGACAGAGACAACAATACT+AGG 0.481339 8_4:-24300652 None:intergenic
GAGCAATGGTTGAGAGACTA+TGG 0.482302 8_4:+24300772 Msa1320100:CDS
CATCATGTCCAACACTGGTA+AGG 0.489057 8_4:-24301561 None:intergenic
AGGTGTTATCTTTATGGATG+TGG 0.490354 8_4:+24300805 Msa1320100:CDS
GTTGGTCAAATGTGGGGTCC+AGG 0.492083 8_4:+24301745 Msa1320100:CDS
TGGAGAGAAAAGGACGGCCT+CGG 0.492416 8_4:+24300930 Msa1320100:CDS
GAAGCTAGGTTTGATCCTGT+GGG 0.500369 8_4:+24301770 Msa1320100:CDS
CAGCGTAGGTTACTTAAGCA+TGG 0.502232 8_4:+24301953 Msa1320100:three_prime_UTR
TTCGTTGGGCGCCAGAGACT+AGG 0.511728 8_4:+24300677 Msa1320100:CDS
TTGATTTACTTTCATAATGG+TGG 0.512216 8_4:+24300562 Msa1320100:CDS
TGTCTTGTTATTGGGTATGG+TGG 0.512697 8_4:+24301683 Msa1320100:CDS
TGACCATGTTGGTCAAATGT+GGG 0.525547 8_4:+24301738 Msa1320100:CDS
AATTATGAACCTTATTTCCG+AGG 0.528856 8_4:-24300947 None:intergenic
TATTGCAATCCAATGGCAAA+AGG 0.529808 8_4:+24301626 Msa1320100:CDS
ACACTGGTAAGGGCAAAGTC+TGG 0.531768 8_4:-24301550 None:intergenic
GTGACCATGTTGGTCAAATG+TGG 0.535257 8_4:+24301737 Msa1320100:CDS
TTCTTCCAAAAGGTTTGCAA+CGG 0.535946 8_4:+24301526 Msa1320100:intron
TATGGGTACCAGCATCAGCC+GGG 0.538444 8_4:-24300600 None:intergenic
AATCAAATGACGAATCCTGA+TGG 0.539467 8_4:+24300748 Msa1320100:CDS
TTGTTCTTGAAGGATGATGA+TGG 0.545002 8_4:-24300300 None:intergenic
TGTCCGGGTAACCTAGTCTC+TGG 0.551902 8_4:-24300688 None:intergenic
TTGAGGGTGTCTTGTAGGCA+CGG 0.553474 8_4:-24300396 None:intergenic
TACCAGTGTTGGACATGATG+TGG 0.554021 8_4:+24301564 Msa1320100:CDS
TGGGTATGGTGGAGACATCA+TGG 0.554451 8_4:+24301694 Msa1320100:CDS
GTTGGACATGATGTGGGCCA+TGG 0.554890 8_4:+24301571 Msa1320100:CDS
GGTCAACCATATCAATATTG+TGG 0.557103 8_4:-24301796 None:intergenic
GTGGGGTCCAGGTTGAAGCT+AGG 0.557168 8_4:+24301756 Msa1320100:CDS
CATAAAGATAACACCTCGAT+GGG 0.558427 8_4:-24300798 None:intergenic
TGCAAACATTGTGTTCAATA+CGG 0.560159 8_4:+24300834 Msa1320100:CDS
GTGCGGTTATAAATATTGCA+AGG 0.561146 8_4:+24301831 Msa1320100:CDS
AGCGTAGGTTACTTAAGCAT+GGG 0.562348 8_4:+24301954 Msa1320100:three_prime_UTR
ATGTAAGTTTGGTGCAGCGT+AGG 0.563718 8_4:+24301939 Msa1320100:three_prime_UTR
GGATTGAGTTTCAATCCTGA+CGG 0.564876 8_4:+24300364 Msa1320100:CDS
TGAAGGTTCGGGGTTCGCGT+CGG 0.566328 8_4:-24300419 None:intergenic
AGTCTCTGGCGCCCAACGAA+AGG 0.566700 8_4:-24300674 None:intergenic
CGAGCATCTTGATATTGTCC+GGG 0.569073 8_4:-24300703 None:intergenic
GCACGGTGGAGAGTTCCGTC+AGG 0.576931 8_4:-24300379 None:intergenic
TAACCGCACTAGCTCTAGTA+GGG 0.577127 8_4:-24301817 None:intergenic
TGGTTGGGTCATCCTAAGCC+CGG 0.577877 8_4:+24300582 Msa1320100:CDS
ATCATGTCCAACACTGGTAA+GGG 0.578520 8_4:-24301560 None:intergenic
TCAATATTGTGGAACCCCAC+AGG 0.582193 8_4:-24301785 None:intergenic
CCATAAAGATAACACCTCGA+TGG 0.586600 8_4:-24300799 None:intergenic
GCCCACATCATGTCCAACAC+TGG 0.603571 8_4:-24301566 None:intergenic
GCGCCAGAGACTAGGTTACC+CGG 0.604483 8_4:+24300685 Msa1320100:CDS
GAACCCCGAACCTTCACCGG+GGG 0.607617 8_4:+24300426 Msa1320100:CDS
TGCGGTTATAAATATTGCAA+GGG 0.608893 8_4:+24301832 Msa1320100:CDS
GTCCATATCTCCAATCTGCA+TGG 0.609856 8_4:-24300857 None:intergenic
GGGCCATGGCTTTGCCTACG+GGG 0.610243 8_4:+24301585 Msa1320100:CDS
CGGGGACAAATCGTGACCAT+AGG 0.613124 8_4:+24301603 Msa1320100:CDS
AAGCTAGGTTTGATCCTGTG+GGG 0.615240 8_4:+24301771 Msa1320100:CDS
CCATAGGTATTGCAATCCAA+TGG 0.617062 8_4:+24301619 Msa1320100:CDS
ACATAGGTTGATTCATAACA+AGG 0.617116 8_4:-24300903 None:intergenic
GATCAAACCTAGCTTCAACC+TGG 0.619274 8_4:-24301763 None:intergenic
ACCAGTGTTGGACATGATGT+GGG 0.635087 8_4:+24301565 Msa1320100:CDS
ACAAGAATTTGTGACCATGT+TGG 0.638031 8_4:+24301727 Msa1320100:CDS
GATTGAAACTCAATCCAAAG+TGG 0.656440 8_4:-24300357 None:intergenic
TGTCCCCGTAGGCAAAGCCA+TGG 0.658805 8_4:-24301588 None:intergenic
GACCATGTTGGTCAAATGTG+GGG 0.660571 8_4:+24301739 Msa1320100:CDS
GCGTAGGTTACTTAAGCATG+GGG 0.671820 8_4:+24301955 Msa1320100:three_prime_UTR
TGACCCTACTAGAGCTAGTG+CGG 0.675155 8_4:+24301814 Msa1320100:CDS
TGGTCACGATTTGTCCCCGT+AGG 0.679424 8_4:-24301599 None:intergenic
AAAATGTCAAGAAATTAGGG+AGG 0.680447 8_4:+24301660 Msa1320100:CDS
CGAATCCTGATGGAGAGCAA+TGG 0.687815 8_4:+24300758 Msa1320100:CDS
GACCCCACATTTGACCAACA+TGG 0.691227 8_4:-24301741 None:intergenic
AACCCCGAACCTTCACCGGG+GGG 0.694765 8_4:+24300427 Msa1320100:CDS
GAGACTATGGTGACCCATCG+AGG 0.705564 8_4:+24300785 Msa1320100:CDS
ACCATCAAACGACAATACCG+TGG 0.707154 8_4:+24300525 Msa1320100:CDS
AGGGTGTCTTGTAGGCACGG+TGG 0.724739 8_4:-24300393 None:intergenic
CGAACCCCGAACCTTCACCG+GGG 0.756583 8_4:+24300425 Msa1320100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTTTGACATTATTTT+TGG - chr8_4:24300328-24300347 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - chr8_4:24300559-24300578 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + chr8_4:24300559-24300578 Msa1320100:CDS 15.0%
!!! ATTTCATTTTAGTTTTATAG+AGG + chr8_4:24301301-24301320 Msa1320100:intron 15.0%
!! TAAAATTTCAAACATCTATA+AGG - chr8_4:24301363-24301382 None:intergenic 15.0%
!!! TCAAATTTTGACATTATTTT+TGG - chr8_4:24300328-24300347 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - chr8_4:24300559-24300578 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + chr8_4:24300559-24300578 Msa1320100:CDS 15.0%
!!! ATTTCATTTTAGTTTTATAG+AGG + chr8_4:24301301-24301320 Msa1320100:intron 15.0%
!! TAAAATTTCAAACATCTATA+AGG - chr8_4:24301363-24301382 None:intergenic 15.0%
!!! TTGATGATGAGAAAAAAATA+TGG + chr8_4:24300476-24300495 Msa1320100:CDS 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + chr8_4:24300477-24300496 Msa1320100:CDS 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - chr8_4:24300620-24300639 None:intergenic 20.0%
!!! AAAATATATCTTGACTTGTT+TGG + chr8_4:24301052-24301071 Msa1320100:intron 20.0%
!!! TTGATGATGAGAAAAAAATA+TGG + chr8_4:24300476-24300495 Msa1320100:CDS 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + chr8_4:24300477-24300496 Msa1320100:CDS 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - chr8_4:24300620-24300639 None:intergenic 20.0%
!!! AAAATATATCTTGACTTGTT+TGG + chr8_4:24301052-24301071 Msa1320100:intron 20.0%
!!! ATTTTTGGTTTTGTTCTTGA+AGG - chr8_4:24300313-24300332 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - chr8_4:24300464-24300483 None:intergenic 25.0%
! TTGATTTACTTTCATAATGG+TGG + chr8_4:24300562-24300581 Msa1320100:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - chr8_4:24300621-24300640 None:intergenic 25.0%
! AATTTCAAACATCTATAAGG+TGG - chr8_4:24301360-24301379 None:intergenic 25.0%
! CAAAATTACTCATTATCATG+TGG + chr8_4:24301444-24301463 Msa1320100:intron 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + chr8_4:24301516-24301535 Msa1320100:intron 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + chr8_4:24301656-24301675 Msa1320100:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + chr8_4:24301657-24301676 Msa1320100:CDS 25.0%
!! GAGTTTTTGTCATGATTAAT+TGG + chr8_4:24301870-24301889 Msa1320100:exon 25.0%
! CTGGATTATTAATGTAAGTT+TGG + chr8_4:24301928-24301947 Msa1320100:three_prime_UTR 25.0%
!!! GATAGTGAATTTTGATTTAG+CGG - chr8_4:24300256-24300275 None:intergenic 25.0%
!!! ATTTTTGGTTTTGTTCTTGA+AGG - chr8_4:24300313-24300332 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - chr8_4:24300464-24300483 None:intergenic 25.0%
! TTGATTTACTTTCATAATGG+TGG + chr8_4:24300562-24300581 Msa1320100:CDS 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - chr8_4:24300621-24300640 None:intergenic 25.0%
! AATTTCAAACATCTATAAGG+TGG - chr8_4:24301360-24301379 None:intergenic 25.0%
! CAAAATTACTCATTATCATG+TGG + chr8_4:24301444-24301463 Msa1320100:intron 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + chr8_4:24301516-24301535 Msa1320100:intron 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + chr8_4:24301656-24301675 Msa1320100:CDS 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + chr8_4:24301657-24301676 Msa1320100:CDS 25.0%
!! GAGTTTTTGTCATGATTAAT+TGG + chr8_4:24301870-24301889 Msa1320100:exon 25.0%
! CTGGATTATTAATGTAAGTT+TGG + chr8_4:24301928-24301947 Msa1320100:three_prime_UTR 25.0%
TTTGATCCATATAACCACTT+TGG + chr8_4:24300343-24300362 Msa1320100:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + chr8_4:24300491-24300510 Msa1320100:CDS 30.0%
TTTACTTTCATAATGGTGGT+TGG + chr8_4:24300566-24300585 Msa1320100:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + chr8_4:24300567-24300586 Msa1320100:CDS 30.0%
TGCAAACATTGTGTTCAATA+CGG + chr8_4:24300834-24300853 Msa1320100:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG - chr8_4:24300906-24300925 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + chr8_4:24300910-24300929 Msa1320100:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - chr8_4:24300950-24300969 None:intergenic 30.0%
GAGAATAACACATATCTCTT+TGG + chr8_4:24301022-24301041 Msa1320100:intron 30.0%
! GTAAGTTCCTGCTATAATTT+TGG + chr8_4:24301163-24301182 Msa1320100:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - chr8_4:24301215-24301234 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - chr8_4:24301341-24301360 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + chr8_4:24301379-24301398 Msa1320100:intron 30.0%
TTGATTCAAAGAGATTAAGG+TGG - chr8_4:24301422-24301441 None:intergenic 30.0%
GTCTTGATTCAAAGAGATTA+AGG - chr8_4:24301425-24301444 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - chr8_4:24301653-24301672 None:intergenic 30.0%
AAAATGTCAAGAAATTAGGG+AGG + chr8_4:24301660-24301679 Msa1320100:CDS 30.0%
TGCGGTTATAAATATTGCAA+GGG + chr8_4:24301832-24301851 Msa1320100:CDS 30.0%
TCTTTGTATTTCTCTTAGTC+TGG + chr8_4:24301909-24301928 Msa1320100:three_prime_UTR 30.0%
TTTGATCCATATAACCACTT+TGG + chr8_4:24300343-24300362 Msa1320100:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + chr8_4:24300491-24300510 Msa1320100:CDS 30.0%
TTTACTTTCATAATGGTGGT+TGG + chr8_4:24300566-24300585 Msa1320100:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + chr8_4:24300567-24300586 Msa1320100:CDS 30.0%
TGCAAACATTGTGTTCAATA+CGG + chr8_4:24300834-24300853 Msa1320100:CDS 30.0%
!! ACATAGGTTGATTCATAACA+AGG - chr8_4:24300906-24300925 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + chr8_4:24300910-24300929 Msa1320100:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - chr8_4:24300950-24300969 None:intergenic 30.0%
GAGAATAACACATATCTCTT+TGG + chr8_4:24301022-24301041 Msa1320100:intron 30.0%
! GTAAGTTCCTGCTATAATTT+TGG + chr8_4:24301163-24301182 Msa1320100:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - chr8_4:24301215-24301234 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - chr8_4:24301341-24301360 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + chr8_4:24301379-24301398 Msa1320100:intron 30.0%
TTGATTCAAAGAGATTAAGG+TGG - chr8_4:24301422-24301441 None:intergenic 30.0%
GTCTTGATTCAAAGAGATTA+AGG - chr8_4:24301425-24301444 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - chr8_4:24301653-24301672 None:intergenic 30.0%
AAAATGTCAAGAAATTAGGG+AGG + chr8_4:24301660-24301679 Msa1320100:CDS 30.0%
TGCGGTTATAAATATTGCAA+GGG + chr8_4:24301832-24301851 Msa1320100:CDS 30.0%
TCTTTGTATTTCTCTTAGTC+TGG + chr8_4:24301909-24301928 Msa1320100:three_prime_UTR 30.0%
TTGTTCTTGAAGGATGATGA+TGG - chr8_4:24300303-24300322 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - chr8_4:24300352-24300371 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - chr8_4:24300360-24300379 None:intergenic 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - chr8_4:24300517-24300536 None:intergenic 35.0%
AATCAAATGACGAATCCTGA+TGG + chr8_4:24300748-24300767 Msa1320100:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - chr8_4:24300801-24300820 None:intergenic 35.0%
! AGGTGTTATCTTTATGGATG+TGG + chr8_4:24300805-24300824 Msa1320100:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG + chr8_4:24300811-24300830 Msa1320100:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - chr8_4:24300922-24300941 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + chr8_4:24300920-24300939 Msa1320100:CDS 35.0%
CATCAAGCCAAAATTATAGC+AGG - chr8_4:24301173-24301192 None:intergenic 35.0%
!!! GCTATAATTTTGGCTTGATG+TGG + chr8_4:24301173-24301192 Msa1320100:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + chr8_4:24301179-24301198 Msa1320100:intron 35.0%
GAGAAATCAAGAGACAAATG+AGG - chr8_4:24301258-24301277 None:intergenic 35.0%
TGTTGATCCAATGTTTGGTT+TGG - chr8_4:24301389-24301408 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - chr8_4:24301394-24301413 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + chr8_4:24301526-24301545 Msa1320100:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG + chr8_4:24301626-24301645 Msa1320100:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + chr8_4:24301727-24301746 Msa1320100:CDS 35.0%
GGTCAACCATATCAATATTG+TGG - chr8_4:24301799-24301818 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG + chr8_4:24301831-24301850 Msa1320100:CDS 35.0%
TTGTTCTTGAAGGATGATGA+TGG - chr8_4:24300303-24300322 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - chr8_4:24300352-24300371 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - chr8_4:24300360-24300379 None:intergenic 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - chr8_4:24300517-24300536 None:intergenic 35.0%
AATCAAATGACGAATCCTGA+TGG + chr8_4:24300748-24300767 Msa1320100:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - chr8_4:24300801-24300820 None:intergenic 35.0%
! AGGTGTTATCTTTATGGATG+TGG + chr8_4:24300805-24300824 Msa1320100:CDS 35.0%
TATCTTTATGGATGTGGTTG+TGG + chr8_4:24300811-24300830 Msa1320100:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - chr8_4:24300922-24300941 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + chr8_4:24300920-24300939 Msa1320100:CDS 35.0%
CATCAAGCCAAAATTATAGC+AGG - chr8_4:24301173-24301192 None:intergenic 35.0%
!!! GCTATAATTTTGGCTTGATG+TGG + chr8_4:24301173-24301192 Msa1320100:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + chr8_4:24301179-24301198 Msa1320100:intron 35.0%
GAGAAATCAAGAGACAAATG+AGG - chr8_4:24301258-24301277 None:intergenic 35.0%
TGTTGATCCAATGTTTGGTT+TGG - chr8_4:24301389-24301408 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - chr8_4:24301394-24301413 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + chr8_4:24301526-24301545 Msa1320100:intron 35.0%
TATTGCAATCCAATGGCAAA+AGG + chr8_4:24301626-24301645 Msa1320100:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + chr8_4:24301727-24301746 Msa1320100:CDS 35.0%
GGTCAACCATATCAATATTG+TGG - chr8_4:24301799-24301818 None:intergenic 35.0%
GTGCGGTTATAAATATTGCA+AGG + chr8_4:24301831-24301850 Msa1320100:CDS 35.0%
GGATTGAGTTTCAATCCTGA+CGG + chr8_4:24300364-24300383 Msa1320100:CDS 40.0%
TCGAGCATCTTGATATTGTC+CGG - chr8_4:24300707-24300726 None:intergenic 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + chr8_4:24300719-24300738 Msa1320100:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + chr8_4:24300720-24300739 Msa1320100:CDS 40.0%
CCATAAAGATAACACCTCGA+TGG - chr8_4:24300802-24300821 None:intergenic 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + chr8_4:24300799-24300818 Msa1320100:CDS 40.0%
ATATGGACTTAGAGCCTCTA+AGG + chr8_4:24300872-24300891 Msa1320100:CDS 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + chr8_4:24300880-24300899 Msa1320100:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + chr8_4:24300924-24300943 Msa1320100:CDS 40.0%
! ACAAGTTTTCTCGTGTCTCA+AGG + chr8_4:24301087-24301106 Msa1320100:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG - chr8_4:24301563-24301582 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - chr8_4:24301622-24301641 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + chr8_4:24301619-24301638 Msa1320100:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - chr8_4:24301638-24301657 None:intergenic 40.0%
AATGGCAAAAGGACCACATT+TGG + chr8_4:24301637-24301656 Msa1320100:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + chr8_4:24301674-24301693 Msa1320100:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + chr8_4:24301675-24301694 Msa1320100:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + chr8_4:24301680-24301699 Msa1320100:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + chr8_4:24301683-24301702 Msa1320100:CDS 40.0%
TGACCATGTTGGTCAAATGT+GGG + chr8_4:24301738-24301757 Msa1320100:CDS 40.0%
GGGGTTCCACAATATTGATA+TGG + chr8_4:24301790-24301809 Msa1320100:CDS 40.0%
AGCGTAGGTTACTTAAGCAT+GGG + chr8_4:24301954-24301973 Msa1320100:three_prime_UTR 40.0%
GGATTGAGTTTCAATCCTGA+CGG + chr8_4:24300364-24300383 Msa1320100:CDS 40.0%
TCGAGCATCTTGATATTGTC+CGG - chr8_4:24300707-24300726 None:intergenic 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + chr8_4:24300719-24300738 Msa1320100:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + chr8_4:24300720-24300739 Msa1320100:CDS 40.0%
CCATAAAGATAACACCTCGA+TGG - chr8_4:24300802-24300821 None:intergenic 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + chr8_4:24300799-24300818 Msa1320100:CDS 40.0%
ATATGGACTTAGAGCCTCTA+AGG + chr8_4:24300872-24300891 Msa1320100:CDS 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + chr8_4:24300880-24300899 Msa1320100:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + chr8_4:24300924-24300943 Msa1320100:CDS 40.0%
! ACAAGTTTTCTCGTGTCTCA+AGG + chr8_4:24301087-24301106 Msa1320100:intron 40.0%
ATCATGTCCAACACTGGTAA+GGG - chr8_4:24301563-24301582 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - chr8_4:24301622-24301641 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + chr8_4:24301619-24301638 Msa1320100:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - chr8_4:24301638-24301657 None:intergenic 40.0%
AATGGCAAAAGGACCACATT+TGG + chr8_4:24301637-24301656 Msa1320100:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + chr8_4:24301674-24301693 Msa1320100:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + chr8_4:24301675-24301694 Msa1320100:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + chr8_4:24301680-24301699 Msa1320100:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + chr8_4:24301683-24301702 Msa1320100:CDS 40.0%
TGACCATGTTGGTCAAATGT+GGG + chr8_4:24301738-24301757 Msa1320100:CDS 40.0%
GGGGTTCCACAATATTGATA+TGG + chr8_4:24301790-24301809 Msa1320100:CDS 40.0%
AGCGTAGGTTACTTAAGCAT+GGG + chr8_4:24301954-24301973 Msa1320100:three_prime_UTR 40.0%
ACCATCAAACGACAATACCG+TGG + chr8_4:24300525-24300544 Msa1320100:CDS 45.0%
GCGACAGAGACAACAATACT+AGG - chr8_4:24300655-24300674 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+GGG - chr8_4:24300706-24300725 None:intergenic 45.0%
GAGCAATGGTTGAGAGACTA+TGG + chr8_4:24300772-24300791 Msa1320100:CDS 45.0%
TTCAATACGGCCATGCAGAT+TGG + chr8_4:24300847-24300866 Msa1320100:CDS 45.0%
GTCCATATCTCCAATCTGCA+TGG - chr8_4:24300860-24300879 None:intergenic 45.0%
ACAAGGCCACTAATCCTTAG+AGG - chr8_4:24300889-24300908 None:intergenic 45.0%
!! TGACTTGTTTGGATGTGCGA+TGG + chr8_4:24301063-24301082 Msa1320100:intron 45.0%
CATCATGTCCAACACTGGTA+AGG - chr8_4:24301564-24301583 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG + chr8_4:24301564-24301583 Msa1320100:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + chr8_4:24301565-24301584 Msa1320100:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + chr8_4:24301737-24301756 Msa1320100:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + chr8_4:24301739-24301758 Msa1320100:CDS 45.0%
GATCAAACCTAGCTTCAACC+TGG - chr8_4:24301766-24301785 None:intergenic 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + chr8_4:24301769-24301788 Msa1320100:CDS 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + chr8_4:24301770-24301789 Msa1320100:CDS 45.0%
AAGCTAGGTTTGATCCTGTG+GGG + chr8_4:24301771-24301790 Msa1320100:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG - chr8_4:24301788-24301807 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - chr8_4:24301820-24301839 None:intergenic 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - chr8_4:24301821-24301840 None:intergenic 45.0%
!! ATGTAAGTTTGGTGCAGCGT+AGG + chr8_4:24301939-24301958 Msa1320100:three_prime_UTR 45.0%
CAGCGTAGGTTACTTAAGCA+TGG + chr8_4:24301953-24301972 Msa1320100:three_prime_UTR 45.0%
GCGTAGGTTACTTAAGCATG+GGG + chr8_4:24301955-24301974 Msa1320100:three_prime_UTR 45.0%
ACCATCAAACGACAATACCG+TGG + chr8_4:24300525-24300544 Msa1320100:CDS 45.0%
GCGACAGAGACAACAATACT+AGG - chr8_4:24300655-24300674 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+GGG - chr8_4:24300706-24300725 None:intergenic 45.0%
GAGCAATGGTTGAGAGACTA+TGG + chr8_4:24300772-24300791 Msa1320100:CDS 45.0%
TTCAATACGGCCATGCAGAT+TGG + chr8_4:24300847-24300866 Msa1320100:CDS 45.0%
GTCCATATCTCCAATCTGCA+TGG - chr8_4:24300860-24300879 None:intergenic 45.0%
ACAAGGCCACTAATCCTTAG+AGG - chr8_4:24300889-24300908 None:intergenic 45.0%
!! TGACTTGTTTGGATGTGCGA+TGG + chr8_4:24301063-24301082 Msa1320100:intron 45.0%
CATCATGTCCAACACTGGTA+AGG - chr8_4:24301564-24301583 None:intergenic 45.0%
! TACCAGTGTTGGACATGATG+TGG + chr8_4:24301564-24301583 Msa1320100:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + chr8_4:24301565-24301584 Msa1320100:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + chr8_4:24301737-24301756 Msa1320100:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + chr8_4:24301739-24301758 Msa1320100:CDS 45.0%
GATCAAACCTAGCTTCAACC+TGG - chr8_4:24301766-24301785 None:intergenic 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + chr8_4:24301769-24301788 Msa1320100:CDS 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + chr8_4:24301770-24301789 Msa1320100:CDS 45.0%
AAGCTAGGTTTGATCCTGTG+GGG + chr8_4:24301771-24301790 Msa1320100:CDS 45.0%
TCAATATTGTGGAACCCCAC+AGG - chr8_4:24301788-24301807 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - chr8_4:24301820-24301839 None:intergenic 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - chr8_4:24301821-24301840 None:intergenic 45.0%
!! ATGTAAGTTTGGTGCAGCGT+AGG + chr8_4:24301939-24301958 Msa1320100:three_prime_UTR 45.0%
CAGCGTAGGTTACTTAAGCA+TGG + chr8_4:24301953-24301972 Msa1320100:three_prime_UTR 45.0%
GCGTAGGTTACTTAAGCATG+GGG + chr8_4:24301955-24301974 Msa1320100:three_prime_UTR 45.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - chr8_4:24300399-24300418 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - chr8_4:24300529-24300548 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - chr8_4:24300545-24300564 None:intergenic 50.0%
TTATGGGTACCAGCATCAGC+CGG - chr8_4:24300604-24300623 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + chr8_4:24300662-24300681 Msa1320100:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + chr8_4:24300663-24300682 Msa1320100:CDS 50.0%
CGAATCCTGATGGAGAGCAA+TGG + chr8_4:24300758-24300777 Msa1320100:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - chr8_4:24300766-24300785 None:intergenic 50.0%
GGCCATGCAGATTGGAGATA+TGG + chr8_4:24300855-24300874 Msa1320100:CDS 50.0%
AAAGGACGGCCTCGGAAATA+AGG + chr8_4:24300938-24300957 Msa1320100:CDS 50.0%
GGCACTGCACAACCAAACAT+AGG + chr8_4:24301200-24301219 Msa1320100:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - chr8_4:24301534-24301553 None:intergenic 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - chr8_4:24301553-24301572 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + chr8_4:24301553-24301572 Msa1320100:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG + chr8_4:24301694-24301713 Msa1320100:CDS 50.0%
GACCCCACATTTGACCAACA+TGG - chr8_4:24301744-24301763 None:intergenic 50.0%
TGACCCTACTAGAGCTAGTG+CGG + chr8_4:24301814-24301833 Msa1320100:CDS 50.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - chr8_4:24300399-24300418 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - chr8_4:24300529-24300548 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - chr8_4:24300545-24300564 None:intergenic 50.0%
TTATGGGTACCAGCATCAGC+CGG - chr8_4:24300604-24300623 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + chr8_4:24300662-24300681 Msa1320100:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + chr8_4:24300663-24300682 Msa1320100:CDS 50.0%
CGAATCCTGATGGAGAGCAA+TGG + chr8_4:24300758-24300777 Msa1320100:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - chr8_4:24300766-24300785 None:intergenic 50.0%
GGCCATGCAGATTGGAGATA+TGG + chr8_4:24300855-24300874 Msa1320100:CDS 50.0%
AAAGGACGGCCTCGGAAATA+AGG + chr8_4:24300938-24300957 Msa1320100:CDS 50.0%
GGCACTGCACAACCAAACAT+AGG + chr8_4:24301200-24301219 Msa1320100:intron 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - chr8_4:24301534-24301553 None:intergenic 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - chr8_4:24301553-24301572 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + chr8_4:24301553-24301572 Msa1320100:CDS 50.0%
! TGGGTATGGTGGAGACATCA+TGG + chr8_4:24301694-24301713 Msa1320100:CDS 50.0%
GACCCCACATTTGACCAACA+TGG - chr8_4:24301744-24301763 None:intergenic 50.0%
TGACCCTACTAGAGCTAGTG+CGG + chr8_4:24301814-24301833 Msa1320100:CDS 50.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - chr8_4:24300404-24300423 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + chr8_4:24300582-24300601 Msa1320100:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - chr8_4:24300603-24300622 None:intergenic 55.0%
TGTCCGGGTAACCTAGTCTC+TGG - chr8_4:24300691-24300710 None:intergenic 55.0%
GAGACTATGGTGACCCATCG+AGG + chr8_4:24300785-24300804 Msa1320100:CDS 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + chr8_4:24300930-24300949 Msa1320100:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - chr8_4:24301569-24301588 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + chr8_4:24301571-24301590 Msa1320100:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - chr8_4:24301602-24301621 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + chr8_4:24301603-24301622 Msa1320100:CDS 55.0%
GTTGGTCAAATGTGGGGTCC+AGG + chr8_4:24301745-24301764 Msa1320100:CDS 55.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - chr8_4:24300404-24300423 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + chr8_4:24300582-24300601 Msa1320100:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - chr8_4:24300603-24300622 None:intergenic 55.0%
TGTCCGGGTAACCTAGTCTC+TGG - chr8_4:24300691-24300710 None:intergenic 55.0%
GAGACTATGGTGACCCATCG+AGG + chr8_4:24300785-24300804 Msa1320100:CDS 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + chr8_4:24300930-24300949 Msa1320100:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - chr8_4:24301569-24301588 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + chr8_4:24301571-24301590 Msa1320100:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - chr8_4:24301602-24301621 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + chr8_4:24301603-24301622 Msa1320100:CDS 55.0%
GTTGGTCAAATGTGGGGTCC+AGG + chr8_4:24301745-24301764 Msa1320100:CDS 55.0%
! AGGGTGTCTTGTAGGCACGG+TGG - chr8_4:24300396-24300415 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - chr8_4:24300422-24300441 None:intergenic 60.0%
AGAACCCCCCGGTGAAGGTT+CGG - chr8_4:24300434-24300453 None:intergenic 60.0%
ACCTTCACCGGGGGGTTCTA+CGG + chr8_4:24300435-24300454 Msa1320100:CDS 60.0%
TTGGACACCGTAGAACCCCC+CGG - chr8_4:24300445-24300464 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + chr8_4:24300592-24300611 Msa1320100:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - chr8_4:24300597-24300616 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - chr8_4:24300677-24300696 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + chr8_4:24300677-24300696 Msa1320100:CDS 60.0%
GCGCCAGAGACTAGGTTACC+CGG + chr8_4:24300685-24300704 Msa1320100:CDS 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + chr8_4:24301583-24301602 Msa1320100:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + chr8_4:24301584-24301603 Msa1320100:CDS 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - chr8_4:24301591-24301610 None:intergenic 60.0%
! GTGGGGTCCAGGTTGAAGCT+AGG + chr8_4:24301756-24301775 Msa1320100:CDS 60.0%
! AGGGTGTCTTGTAGGCACGG+TGG - chr8_4:24300396-24300415 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - chr8_4:24300422-24300441 None:intergenic 60.0%
AGAACCCCCCGGTGAAGGTT+CGG - chr8_4:24300434-24300453 None:intergenic 60.0%
ACCTTCACCGGGGGGTTCTA+CGG + chr8_4:24300435-24300454 Msa1320100:CDS 60.0%
TTGGACACCGTAGAACCCCC+CGG - chr8_4:24300445-24300464 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + chr8_4:24300592-24300611 Msa1320100:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - chr8_4:24300597-24300616 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - chr8_4:24300677-24300696 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + chr8_4:24300677-24300696 Msa1320100:CDS 60.0%
GCGCCAGAGACTAGGTTACC+CGG + chr8_4:24300685-24300704 Msa1320100:CDS 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + chr8_4:24301583-24301602 Msa1320100:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + chr8_4:24301584-24301603 Msa1320100:CDS 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - chr8_4:24301591-24301610 None:intergenic 60.0%
! GTGGGGTCCAGGTTGAAGCT+AGG + chr8_4:24301756-24301775 Msa1320100:CDS 60.0%
GCACGGTGGAGAGTTCCGTC+AGG - chr8_4:24300382-24300401 None:intergenic 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - chr8_4:24300415-24300434 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - chr8_4:24300416-24300435 None:intergenic 65.0%
CGCGAACCCCGAACCTTCAC+CGG + chr8_4:24300423-24300442 Msa1320100:CDS 65.0%
GCGAACCCCGAACCTTCACC+GGG + chr8_4:24300424-24300443 Msa1320100:CDS 65.0%
CGAACCCCGAACCTTCACCG+GGG + chr8_4:24300425-24300444 Msa1320100:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + chr8_4:24300426-24300445 Msa1320100:CDS 65.0%
AACCCCGAACCTTCACCGGG+GGG + chr8_4:24300427-24300446 Msa1320100:CDS 65.0%
AACCCCCCGGTGAAGGTTCG+GGG - chr8_4:24300432-24300451 None:intergenic 65.0%
GAACCCCCCGGTGAAGGTTC+GGG - chr8_4:24300433-24300452 None:intergenic 65.0%
ACCGTAGAACCCCCCGGTGA+AGG - chr8_4:24300439-24300458 None:intergenic 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + chr8_4:24301585-24301604 Msa1320100:CDS 65.0%
GCACGGTGGAGAGTTCCGTC+AGG - chr8_4:24300382-24300401 None:intergenic 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - chr8_4:24300415-24300434 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - chr8_4:24300416-24300435 None:intergenic 65.0%
CGCGAACCCCGAACCTTCAC+CGG + chr8_4:24300423-24300442 Msa1320100:CDS 65.0%
GCGAACCCCGAACCTTCACC+GGG + chr8_4:24300424-24300443 Msa1320100:CDS 65.0%
CGAACCCCGAACCTTCACCG+GGG + chr8_4:24300425-24300444 Msa1320100:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + chr8_4:24300426-24300445 Msa1320100:CDS 65.0%
AACCCCGAACCTTCACCGGG+GGG + chr8_4:24300427-24300446 Msa1320100:CDS 65.0%
AACCCCCCGGTGAAGGTTCG+GGG - chr8_4:24300432-24300451 None:intergenic 65.0%
GAACCCCCCGGTGAAGGTTC+GGG - chr8_4:24300433-24300452 None:intergenic 65.0%
ACCGTAGAACCCCCCGGTGA+AGG - chr8_4:24300439-24300458 None:intergenic 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + chr8_4:24301585-24301604 Msa1320100:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 24300254 24302008 24300254 ID=Msa1320100;Name=Msa1320100
chr8_4 mRNA 24300254 24302008 24300254 ID=Msa1320100-mRNA-1;Parent=Msa1320100;Name=Msa1320100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=80|1|1|1|1|1|2|137|319
chr8_4 exon 24300254 24300959 24300254 ID=Msa1320100-mRNA-1:exon:8353;Parent=Msa1320100-mRNA-1
chr8_4 exon 24301538 24302008 24301538 ID=Msa1320100-mRNA-1:exon:8354;Parent=Msa1320100-mRNA-1
chr8_4 five_prime_UTR 24300254 24300333 24300254 ID=Msa1320100-mRNA-1:five_prime_utr;Parent=Msa1320100-mRNA-1
chr8_4 CDS 24300334 24300959 24300334 ID=Msa1320100-mRNA-1:cds;Parent=Msa1320100-mRNA-1
chr8_4 CDS 24301538 24301871 24301538 ID=Msa1320100-mRNA-1:cds;Parent=Msa1320100-mRNA-1
chr8_4 three_prime_UTR 24301872 24302008 24301872 ID=Msa1320100-mRNA-1:three_prime_utr;Parent=Msa1320100-mRNA-1
Gene Sequence

>Msa1320100

ATGTCAAAATTTGATCCATATAACCACTTTGGATTGAGTTTCAATCCTGACGGAACTCTCCACCGTGCCTACAAGACACCCTCAACCGACGCGAACCCCGAACCTTCACCGGGGGGTTCTACGGTGTCCAAAGACATAACAATTGATGATGAGAAAAAAATATGGGTTCGAATTTTCAGGCCAACAAAACTACCATCAAACGACAATACCGTGGCGCGTTTACCGATATTGATTTACTTTCATAATGGTGGTTGGGTCATCCTAAGCCCGGCTGATGCTGGTACCCATAAAAAATGTTCGAATCTTGCTTCTGACATTCCTAGTATTGTTGTCTCTGTCGCCTTTCGTTGGGCGCCAGAGACTAGGTTACCCGGACAATATCAAGATGCTCGAGATGCTATTTTGTGGGTGAAAAATCAAATGACGAATCCTGATGGAGAGCAATGGTTGAGAGACTATGGTGACCCATCGAGGTGTTATCTTTATGGATGTGGTTGTGGTGCAAACATTGTGTTCAATACGGCCATGCAGATTGGAGATATGGACTTAGAGCCTCTAAGGATTAGTGGCCTTGTTATGAATCAACCTATGTTTTCTGGAGAGAAAAGGACGGCCTCGGAAATAAGGTTTGCAACGGACCAGACTTTGCCCTTACCAGTGTTGGACATGATGTGGGCCATGGCTTTGCCTACGGGGACAAATCGTGACCATAGGTATTGCAATCCAATGGCAAAAGGACCACATTTGGAAAATGTCAAGAAATTAGGGAGGTGTCTTGTTATTGGGTATGGTGGAGACATCATGGTTGATCGACAACAAGAATTTGTGACCATGTTGGTCAAATGTGGGGTCCAGGTTGAAGCTAGGTTTGATCCTGTGGGGTTCCACAATATTGATATGGTTGACCCTACTAGAGCTAGTGCGGTTATAAATATTGCAAGGGAGTTTATTATACTTTGA
Protein sequence

>Msa1320100

MSKFDPYNHFGLSFNPDGTLHRAYKTPSTDANPEPSPGGSTVSKDITIDDEKKIWVRIFRPTKLPSNDNTVARLPILIYFHNGGWVILSPADAGTHKKCSNLASDIPSIVVSVAFRWAPETRLPGQYQDARDAILWVKNQMTNPDGEQWLRDYGDPSRCYLYGCGCGANIVFNTAMQIGDMDLEPLRISGLVMNQPMFSGEKRTASEIRFATDQTLPLPVLDMMWAMALPTGTNRDHRYCNPMAKGPHLENVKKLGRCLVIGYGGDIMVDRQQEFVTMLVKCGVQVEARFDPVGFHNIDMVDPTRASAVINIAREFIIL*