AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1191910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191910 MtrunA17_Chr4g0037871 97.917 144 3 0 12 155 16 159 1.93e-104 296
Msa1191910 MtrunA17_Chr4g0060281 94.000 150 3 1 12 155 16 165 1.18e-101 289
Msa1191910 MtrunA17_Chr1g0149411 42.593 108 59 2 45 152 47 151 9.26e-23 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191910 AT3G07860.1 67.586 145 47 0 10 154 16 160 9.05e-63 191
Msa1191910 AT3G07860.3 67.586 145 47 0 10 154 16 160 9.05e-63 191
Msa1191910 AT3G07860.2 64.062 128 46 0 10 137 16 143 2.78e-49 156
Msa1191910 AT5G25340.1 35.849 106 64 2 46 149 19 122 4.04e-19 80.9
Msa1191910 AT4G32270.1 32.222 90 59 1 45 134 37 124 4.12e-17 76.3
Msa1191910 AT1G80060.1 31.193 109 63 3 46 146 53 157 1.07e-12 64.3
Msa1191910 AT1G80060.4 31.193 109 63 3 46 146 53 157 1.07e-12 64.3
Msa1191910 AT1G80060.5 31.193 109 63 3 46 146 53 157 1.07e-12 64.3
Msa1191910 AT1G80060.3 31.193 109 63 3 46 146 53 157 1.07e-12 64.3

Find 28 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGATGTGCTTCAAAATT+TGG 0.144653 8_1:-36836612 Msa1191910:CDS
ATCTTCAAGCGTAGGATTCT+TGG 0.255078 8_1:+36836988 None:intergenic
AACTCTCATTGGACTTGAAT+TGG 0.259182 8_1:-36836960 Msa1191910:CDS
TTGATTGCAGGAGGAGTGTT+TGG 0.266654 8_1:-36836679 Msa1191910:intron
TTACATGGAACAATCTAGTA+TGG 0.294231 8_1:-36836825 Msa1191910:CDS
GAAGGTGTTGAAAGCATTAT+TGG 0.319812 8_1:-36837035 Msa1191910:intron
TGGGGCATCGTCACATTTCT+TGG 0.329427 8_1:-36836805 Msa1191910:intron
TGATGTGATTCTTATGAATA+CGG 0.363774 8_1:-36836891 Msa1191910:CDS
AATCTAGAAGACACTCAAAA+AGG 0.379366 8_1:-36835587 Msa1191910:CDS
GAAGCACATCATCATCGTTA+AGG 0.405288 8_1:+36836621 None:intergenic
ACTCTCATTGGACTTGAATT+GGG 0.418691 8_1:-36836959 Msa1191910:CDS
TTGGGTACATCTGCAAGTAT+TGG 0.422385 8_1:+36837007 None:intergenic
GATGATGTGCTTCAAAATTT+GGG 0.438672 8_1:-36836611 Msa1191910:CDS
TGATTGCAGGAGGAGTGTTT+GGG 0.443491 8_1:-36836678 Msa1191910:intron
TCTTCAAGCGTAGGATTCTT+GGG 0.457805 8_1:+36836989 None:intergenic
TTGGTTATTGTGCGATGAGA+TGG 0.459607 8_1:-36837095 None:intergenic
GGGCGTTCGAAATAATTCTC+AGG 0.483534 8_1:-36836591 Msa1191910:intron
TGGTTATTGTGCGATGAGAT+GGG 0.507966 8_1:-36837094 None:intergenic
GAAGATGTGGAAACTCTCAT+TGG 0.517568 8_1:-36836971 Msa1191910:CDS
GAATCCTACGCTTGAAGATG+TGG 0.526900 8_1:-36836984 Msa1191910:CDS
TATGAATACGGCAACTCTCA+AGG 0.534810 8_1:-36836879 Msa1191910:CDS
GTTTCCACATCTTCAAGCGT+AGG 0.543211 8_1:+36836980 None:intergenic
TACATGGAACAATCTAGTAT+GGG 0.546371 8_1:-36836824 Msa1191910:CDS
GGTGTTGAAAGCATTATTGG+AGG 0.583098 8_1:-36837032 Msa1191910:CDS
TTGTGCGATGAGATGGGAGA+AGG 0.646862 8_1:-36837088 None:intergenic
ACATGGAACAATCTAGTATG+GGG 0.649258 8_1:-36836823 Msa1191910:CDS
CGATGAGATGGGAGAAGGTG+CGG 0.664098 8_1:-36837083 Msa1191910:CDS
GAAGGTGCGGAATACAAGAG+CGG 0.727904 8_1:-36837070 Msa1191910:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATAAATTACTAGTATT+TGG - chr8_1:36835323-36835342 Msa1191910:intron 15.0%
!! TTAATATTATTAGGAAAAAC+TGG + chr8_1:36836087-36836106 None:intergenic 15.0%
!! TAGAATAAATTACTAGTATT+TGG - chr8_1:36835323-36835342 Msa1191910:intron 15.0%
!! TTAATATTATTAGGAAAAAC+TGG + chr8_1:36836087-36836106 None:intergenic 15.0%
!! CAAGAAAAAAGTTAATTACA+TGG - chr8_1:36835007-36835026 Msa1191910:intron 20.0%
!!! AAGATATGATTTTGCTAATA+CGG + chr8_1:36835412-36835431 None:intergenic 20.0%
!! TCACAATTAAAATAGACATT+AGG + chr8_1:36836666-36836685 None:intergenic 20.0%
!!! ATTTTAATTGTGAACTTTTC+TGG - chr8_1:36836673-36836692 Msa1191910:intron 20.0%
!! CAAGAAAAAAGTTAATTACA+TGG - chr8_1:36835007-36835026 Msa1191910:intron 20.0%
!!! AAGATATGATTTTGCTAATA+CGG + chr8_1:36835412-36835431 None:intergenic 20.0%
!! TCACAATTAAAATAGACATT+AGG + chr8_1:36836666-36836685 None:intergenic 20.0%
!!! ATTTTAATTGTGAACTTTTC+TGG - chr8_1:36836673-36836692 Msa1191910:intron 20.0%
! TGATGTGATTCTTATGAATA+CGG - chr8_1:36834956-36834975 Msa1191910:intron 25.0%
!! AAGAATTTGAAATTTGGCAA+TGG + chr8_1:36835450-36835469 None:intergenic 25.0%
! ATTGCCAAATTTCAAATTCT+TGG - chr8_1:36835449-36835468 Msa1191910:intron 25.0%
! AAAATGCGAAAACTAATCAT+TGG + chr8_1:36835891-36835910 None:intergenic 25.0%
! TCAATATTATGGTAGCAAAT+AGG - chr8_1:36835992-36836011 Msa1191910:intron 25.0%
! CAATATTATGGTAGCAAATA+GGG - chr8_1:36835993-36836012 Msa1191910:intron 25.0%
!! TGTTAATATGATCTACCTTT+TGG - chr8_1:36836042-36836061 Msa1191910:intron 25.0%
!! TTGAACGATGAATTTTGTAT+TGG - chr8_1:36836163-36836182 Msa1191910:intron 25.0%
!! TGAACGATGAATTTTGTATT+GGG - chr8_1:36836164-36836183 Msa1191910:intron 25.0%
!!! ATAACAATAACAAAAGTGCT+AGG + chr8_1:36836763-36836782 None:intergenic 25.0%
!!! CACTTTTGTTATTGTTATGT+TGG - chr8_1:36836765-36836784 Msa1191910:intron 25.0%
! GAAGAACTAAATATTGAAGA+TGG + chr8_1:36836871-36836890 None:intergenic 25.0%
!!! GGTTGTTTATTTTTTAGCAT+TGG - chr8_1:36837040-36837059 Msa1191910:intron 25.0%
! TGATGTGATTCTTATGAATA+CGG - chr8_1:36834956-36834975 Msa1191910:intron 25.0%
!! AAGAATTTGAAATTTGGCAA+TGG + chr8_1:36835450-36835469 None:intergenic 25.0%
! ATTGCCAAATTTCAAATTCT+TGG - chr8_1:36835449-36835468 Msa1191910:intron 25.0%
! AAAATGCGAAAACTAATCAT+TGG + chr8_1:36835891-36835910 None:intergenic 25.0%
! TCAATATTATGGTAGCAAAT+AGG - chr8_1:36835992-36836011 Msa1191910:intron 25.0%
! CAATATTATGGTAGCAAATA+GGG - chr8_1:36835993-36836012 Msa1191910:intron 25.0%
!! TGTTAATATGATCTACCTTT+TGG - chr8_1:36836042-36836061 Msa1191910:intron 25.0%
!! TTGAACGATGAATTTTGTAT+TGG - chr8_1:36836163-36836182 Msa1191910:intron 25.0%
!! TGAACGATGAATTTTGTATT+GGG - chr8_1:36836164-36836183 Msa1191910:intron 25.0%
!!! ATAACAATAACAAAAGTGCT+AGG + chr8_1:36836763-36836782 None:intergenic 25.0%
!!! CACTTTTGTTATTGTTATGT+TGG - chr8_1:36836765-36836784 Msa1191910:intron 25.0%
! GAAGAACTAAATATTGAAGA+TGG + chr8_1:36836871-36836890 None:intergenic 25.0%
!!! GGTTGTTTATTTTTTAGCAT+TGG - chr8_1:36837040-36837059 Msa1191910:intron 25.0%
!!! GCGAATTTCTGTTTTGAAAT+TGG - chr8_1:36834920-36834939 Msa1191910:intron 30.0%
TTACATGGAACAATCTAGTA+TGG - chr8_1:36835022-36835041 Msa1191910:intron 30.0%
TACATGGAACAATCTAGTAT+GGG - chr8_1:36835023-36835042 Msa1191910:intron 30.0%
! TTCAATGTGTTGCTAATCAA+TGG + chr8_1:36835103-36835122 None:intergenic 30.0%
!!! ATCTGATTGATTTTGATTGC+AGG - chr8_1:36835156-36835175 Msa1191910:intron 30.0%
! TGATGATGTGCTTCAAAATT+TGG - chr8_1:36835235-36835254 Msa1191910:intron 30.0%
GATGATGTGCTTCAAAATTT+GGG - chr8_1:36835236-36835255 Msa1191910:intron 30.0%
TATCTATTCTATGTCATTGC+TGG - chr8_1:36835290-36835309 Msa1191910:intron 30.0%
ATCTATTCTATGTCATTGCT+GGG - chr8_1:36835291-36835310 Msa1191910:intron 30.0%
! GTCACCAAGAATTTGAAATT+TGG + chr8_1:36835456-36835475 None:intergenic 30.0%
TTGCTTATATTGCATTACGT+TGG + chr8_1:36835478-36835497 None:intergenic 30.0%
TTGAACACACATGCATTATA+GGG - chr8_1:36835517-36835536 Msa1191910:intron 30.0%
! CATTATAGGGAAAATTTTCC+TGG - chr8_1:36835530-36835549 Msa1191910:intron 30.0%
! GTGAATTGTTTCTTCATTAG+TGG - chr8_1:36835568-36835587 Msa1191910:CDS 30.0%
TATGTAGAATAACCTGTAGT+AGG + chr8_1:36835657-36835676 None:intergenic 30.0%
TCATAAAGTGAGGGTTTATA+GGG + chr8_1:36835703-36835722 None:intergenic 30.0%
ATCATAAAGTGAGGGTTTAT+AGG + chr8_1:36835704-36835723 None:intergenic 30.0%
ACTCGTCTCATCATAAAAAA+TGG - chr8_1:36835840-36835859 Msa1191910:intron 30.0%
TACCATAATATTGACGTTTG+TGG + chr8_1:36835986-36836005 None:intergenic 30.0%
! ATTCTTTTGTCATGACATAG+GGG + chr8_1:36836243-36836262 None:intergenic 30.0%
! GATTCTTTTGTCATGACATA+GGG + chr8_1:36836244-36836263 None:intergenic 30.0%
! AGATTCTTTTGTCATGACAT+AGG + chr8_1:36836245-36836264 None:intergenic 30.0%
AATCTAGAAGACACTCAAAA+AGG - chr8_1:36836260-36836279 Msa1191910:intron 30.0%
!! AAGCTTTGTTGTTGCATATT+GGG + chr8_1:36836411-36836430 None:intergenic 30.0%
! ACAAGTTGAAACAAGAAAGA+AGG + chr8_1:36836437-36836456 None:intergenic 30.0%
AACATTTCCTAGCATATAAC+TGG - chr8_1:36836467-36836486 Msa1191910:intron 30.0%
! TTTTCCATGCATTACATGTT+CGG + chr8_1:36836520-36836539 None:intergenic 30.0%
TAGACATTAGGTGTAGTTAA+AGG + chr8_1:36836654-36836673 None:intergenic 30.0%
AATCATTGCATACGTTCAAT+AGG - chr8_1:36836840-36836859 Msa1191910:CDS 30.0%
TCAAATATTAGCCAACATGT+AGG - chr8_1:36836889-36836908 Msa1191910:CDS 30.0%
! TGGTGTTAAAATCTAGTAGA+TGG - chr8_1:36837007-36837026 Msa1191910:CDS 30.0%
GGTGTTAAAATCTAGTAGAT+GGG - chr8_1:36837008-36837027 Msa1191910:CDS 30.0%
!!! GCGAATTTCTGTTTTGAAAT+TGG - chr8_1:36834920-36834939 Msa1191910:intron 30.0%
TTACATGGAACAATCTAGTA+TGG - chr8_1:36835022-36835041 Msa1191910:intron 30.0%
TACATGGAACAATCTAGTAT+GGG - chr8_1:36835023-36835042 Msa1191910:intron 30.0%
! TTCAATGTGTTGCTAATCAA+TGG + chr8_1:36835103-36835122 None:intergenic 30.0%
!!! ATCTGATTGATTTTGATTGC+AGG - chr8_1:36835156-36835175 Msa1191910:intron 30.0%
! TGATGATGTGCTTCAAAATT+TGG - chr8_1:36835235-36835254 Msa1191910:intron 30.0%
GATGATGTGCTTCAAAATTT+GGG - chr8_1:36835236-36835255 Msa1191910:intron 30.0%
TATCTATTCTATGTCATTGC+TGG - chr8_1:36835290-36835309 Msa1191910:intron 30.0%
ATCTATTCTATGTCATTGCT+GGG - chr8_1:36835291-36835310 Msa1191910:intron 30.0%
! GTCACCAAGAATTTGAAATT+TGG + chr8_1:36835456-36835475 None:intergenic 30.0%
TTGCTTATATTGCATTACGT+TGG + chr8_1:36835478-36835497 None:intergenic 30.0%
TTGAACACACATGCATTATA+GGG - chr8_1:36835517-36835536 Msa1191910:intron 30.0%
! CATTATAGGGAAAATTTTCC+TGG - chr8_1:36835530-36835549 Msa1191910:intron 30.0%
! GTGAATTGTTTCTTCATTAG+TGG - chr8_1:36835568-36835587 Msa1191910:CDS 30.0%
TATGTAGAATAACCTGTAGT+AGG + chr8_1:36835657-36835676 None:intergenic 30.0%
TCATAAAGTGAGGGTTTATA+GGG + chr8_1:36835703-36835722 None:intergenic 30.0%
ATCATAAAGTGAGGGTTTAT+AGG + chr8_1:36835704-36835723 None:intergenic 30.0%
ACTCGTCTCATCATAAAAAA+TGG - chr8_1:36835840-36835859 Msa1191910:intron 30.0%
TACCATAATATTGACGTTTG+TGG + chr8_1:36835986-36836005 None:intergenic 30.0%
! ATTCTTTTGTCATGACATAG+GGG + chr8_1:36836243-36836262 None:intergenic 30.0%
! GATTCTTTTGTCATGACATA+GGG + chr8_1:36836244-36836263 None:intergenic 30.0%
! AGATTCTTTTGTCATGACAT+AGG + chr8_1:36836245-36836264 None:intergenic 30.0%
AATCTAGAAGACACTCAAAA+AGG - chr8_1:36836260-36836279 Msa1191910:intron 30.0%
!! AAGCTTTGTTGTTGCATATT+GGG + chr8_1:36836411-36836430 None:intergenic 30.0%
! ACAAGTTGAAACAAGAAAGA+AGG + chr8_1:36836437-36836456 None:intergenic 30.0%
AACATTTCCTAGCATATAAC+TGG - chr8_1:36836467-36836486 Msa1191910:intron 30.0%
! TTTTCCATGCATTACATGTT+CGG + chr8_1:36836520-36836539 None:intergenic 30.0%
TAGACATTAGGTGTAGTTAA+AGG + chr8_1:36836654-36836673 None:intergenic 30.0%
AATCATTGCATACGTTCAAT+AGG - chr8_1:36836840-36836859 Msa1191910:CDS 30.0%
TCAAATATTAGCCAACATGT+AGG - chr8_1:36836889-36836908 Msa1191910:CDS 30.0%
! TGGTGTTAAAATCTAGTAGA+TGG - chr8_1:36837007-36837026 Msa1191910:CDS 30.0%
GGTGTTAAAATCTAGTAGAT+GGG - chr8_1:36837008-36837027 Msa1191910:CDS 30.0%
!! GAAGGTGTTGAAAGCATTAT+TGG - chr8_1:36834812-36834831 Msa1191910:intron 35.0%
AACTCTCATTGGACTTGAAT+TGG - chr8_1:36834887-36834906 Msa1191910:intron 35.0%
ACTCTCATTGGACTTGAATT+GGG - chr8_1:36834888-36834907 Msa1191910:intron 35.0%
ACATGGAACAATCTAGTATG+GGG - chr8_1:36835024-36835043 Msa1191910:intron 35.0%
!!! TGATTGATTTTGATTGCAGG+AGG - chr8_1:36835159-36835178 Msa1191910:intron 35.0%
! TATGATTTTGCTAATACGGC+AGG + chr8_1:36835408-36835427 None:intergenic 35.0%
CTTGAACACACATGCATTAT+AGG - chr8_1:36835516-36835535 Msa1191910:intron 35.0%
!! TTTCAAAAGCACTGCATGAT+TGG + chr8_1:36835614-36835633 None:intergenic 35.0%
! AATCATGCAGTGCTTTTGAA+AGG - chr8_1:36835613-36835632 Msa1191910:CDS 35.0%
ATGCAATTGCAGAATCAGAT+TGG - chr8_1:36835676-36835695 Msa1191910:intron 35.0%
CATTGCTGATCATAAAGTGA+GGG + chr8_1:36835712-36835731 None:intergenic 35.0%
TCATTGCTGATCATAAAGTG+AGG + chr8_1:36835713-36835732 None:intergenic 35.0%
! TGCTTTCATTTTCAGCTCAA+TGG - chr8_1:36835749-36835768 Msa1191910:intron 35.0%
TGGAAGTTTGTCTGATCTAA+TGG + chr8_1:36835785-36835804 None:intergenic 35.0%
! TAGTTTTCGCATTTTCTCGT+TGG - chr8_1:36835896-36835915 Msa1191910:intron 35.0%
TTCACAAAACAGTATGCAGA+AGG - chr8_1:36835938-36835957 Msa1191910:intron 35.0%
CACCACAAACGTCAATATTA+TGG - chr8_1:36835981-36836000 Msa1191910:intron 35.0%
AAACTGGTGATTGAGCATAA+CGG + chr8_1:36836071-36836090 None:intergenic 35.0%
CATCGTTCAACAATTTCAAG+AGG + chr8_1:36836153-36836172 None:intergenic 35.0%
TACTAAGGCCATGAAAAAAC+CGG + chr8_1:36836294-36836313 None:intergenic 35.0%
TTGATCAGGAAAGCTTACTA+AGG + chr8_1:36836309-36836328 None:intergenic 35.0%
!! AGCTTTGTTGTTGCATATTG+GGG + chr8_1:36836410-36836429 None:intergenic 35.0%
!! GAAGCTTTGTTGTTGCATAT+TGG + chr8_1:36836412-36836431 None:intergenic 35.0%
AGCTTATCCAGTTATATGCT+AGG + chr8_1:36836477-36836496 None:intergenic 35.0%
AATTGAGTCTACTGACAGAT+AGG - chr8_1:36836578-36836597 Msa1191910:intron 35.0%
!! AGTTAAAGGCATTTCAACCA+AGG + chr8_1:36836640-36836659 None:intergenic 35.0%
GAACGTATGCAATGATTGTT+TGG + chr8_1:36836837-36836856 None:intergenic 35.0%
! TGTGATGGAGTCATAAAATG+TGG - chr8_1:36836987-36837006 Msa1191910:CDS 35.0%
!! GAAGGTGTTGAAAGCATTAT+TGG - chr8_1:36834812-36834831 Msa1191910:intron 35.0%
AACTCTCATTGGACTTGAAT+TGG - chr8_1:36834887-36834906 Msa1191910:intron 35.0%
ACTCTCATTGGACTTGAATT+GGG - chr8_1:36834888-36834907 Msa1191910:intron 35.0%
ACATGGAACAATCTAGTATG+GGG - chr8_1:36835024-36835043 Msa1191910:intron 35.0%
!!! TGATTGATTTTGATTGCAGG+AGG - chr8_1:36835159-36835178 Msa1191910:intron 35.0%
! TATGATTTTGCTAATACGGC+AGG + chr8_1:36835408-36835427 None:intergenic 35.0%
CTTGAACACACATGCATTAT+AGG - chr8_1:36835516-36835535 Msa1191910:intron 35.0%
!! TTTCAAAAGCACTGCATGAT+TGG + chr8_1:36835614-36835633 None:intergenic 35.0%
! AATCATGCAGTGCTTTTGAA+AGG - chr8_1:36835613-36835632 Msa1191910:CDS 35.0%
ATGCAATTGCAGAATCAGAT+TGG - chr8_1:36835676-36835695 Msa1191910:intron 35.0%
CATTGCTGATCATAAAGTGA+GGG + chr8_1:36835712-36835731 None:intergenic 35.0%
TCATTGCTGATCATAAAGTG+AGG + chr8_1:36835713-36835732 None:intergenic 35.0%
! TGCTTTCATTTTCAGCTCAA+TGG - chr8_1:36835749-36835768 Msa1191910:intron 35.0%
TGGAAGTTTGTCTGATCTAA+TGG + chr8_1:36835785-36835804 None:intergenic 35.0%
! TAGTTTTCGCATTTTCTCGT+TGG - chr8_1:36835896-36835915 Msa1191910:intron 35.0%
TTCACAAAACAGTATGCAGA+AGG - chr8_1:36835938-36835957 Msa1191910:intron 35.0%
CACCACAAACGTCAATATTA+TGG - chr8_1:36835981-36836000 Msa1191910:intron 35.0%
AAACTGGTGATTGAGCATAA+CGG + chr8_1:36836071-36836090 None:intergenic 35.0%
CATCGTTCAACAATTTCAAG+AGG + chr8_1:36836153-36836172 None:intergenic 35.0%
TACTAAGGCCATGAAAAAAC+CGG + chr8_1:36836294-36836313 None:intergenic 35.0%
TTGATCAGGAAAGCTTACTA+AGG + chr8_1:36836309-36836328 None:intergenic 35.0%
!! AGCTTTGTTGTTGCATATTG+GGG + chr8_1:36836410-36836429 None:intergenic 35.0%
!! GAAGCTTTGTTGTTGCATAT+TGG + chr8_1:36836412-36836431 None:intergenic 35.0%
AGCTTATCCAGTTATATGCT+AGG + chr8_1:36836477-36836496 None:intergenic 35.0%
AATTGAGTCTACTGACAGAT+AGG - chr8_1:36836578-36836597 Msa1191910:intron 35.0%
!! AGTTAAAGGCATTTCAACCA+AGG + chr8_1:36836640-36836659 None:intergenic 35.0%
GAACGTATGCAATGATTGTT+TGG + chr8_1:36836837-36836856 None:intergenic 35.0%
! TGTGATGGAGTCATAAAATG+TGG - chr8_1:36836987-36837006 Msa1191910:CDS 35.0%
ATACAAGAGCGGTTTGAAGA+AGG - chr8_1:36834788-36834807 Msa1191910:CDS 40.0%
!! GGTGTTGAAAGCATTATTGG+AGG - chr8_1:36834815-36834834 Msa1191910:intron 40.0%
TTGGGTACATCTGCAAGTAT+TGG + chr8_1:36834843-36834862 None:intergenic 40.0%
TCTTCAAGCGTAGGATTCTT+GGG + chr8_1:36834861-36834880 None:intergenic 40.0%
ATCTTCAAGCGTAGGATTCT+TGG + chr8_1:36834862-36834881 None:intergenic 40.0%
GAAGATGTGGAAACTCTCAT+TGG - chr8_1:36834876-36834895 Msa1191910:intron 40.0%
TATGAATACGGCAACTCTCA+AGG - chr8_1:36834968-36834987 Msa1191910:intron 40.0%
GAAGCACATCATCATCGTTA+AGG + chr8_1:36835229-36835248 None:intergenic 40.0%
! AATACGGCAGGCATTTCTTT+TGG + chr8_1:36835396-36835415 None:intergenic 40.0%
!! TGCTTTTGAAAGGAAGCTGA+GGG - chr8_1:36835623-36835642 Msa1191910:intron 40.0%
! ATTTTCAGCTCAATGGAACC+TGG - chr8_1:36835756-36835775 Msa1191910:intron 40.0%
TGTCTGATCTAATGGAAACC+AGG + chr8_1:36835777-36835796 None:intergenic 40.0%
TAGAGAAGCTTCAGAGAGTA+TGG + chr8_1:36835805-36835824 None:intergenic 40.0%
AACTAATCATTGGCCAACTC+AGG + chr8_1:36835881-36835900 None:intergenic 40.0%
! TTTCGCATTTTCTCGTTGGT+AGG - chr8_1:36835900-36835919 Msa1191910:intron 40.0%
GGGACAAAATGTATCTGCAT+TGG + chr8_1:36836223-36836242 None:intergenic 40.0%
! ACTCAAAAAGGAGAAAGCAC+CGG - chr8_1:36836272-36836291 Msa1191910:intron 40.0%
!!! AGAAAGCACCGGTTTTTTCA+TGG - chr8_1:36836283-36836302 Msa1191910:intron 40.0%
! GCATGTTTGGTGATCTCTAT+TGG - chr8_1:36836360-36836379 Msa1191910:intron 40.0%
! GTTTGGTGATCTCTATTGGT+CGG - chr8_1:36836364-36836383 Msa1191910:intron 40.0%
! TTTGGTGATCTCTATTGGTC+GGG - chr8_1:36836365-36836384 Msa1191910:intron 40.0%
ACATGTTCGGACAGAAATGA+TGG + chr8_1:36836507-36836526 None:intergenic 40.0%
! AGTCGAGCATATTTTGTCCT+TGG - chr8_1:36836620-36836639 Msa1191910:CDS 40.0%
TTGTTTGGTCCTTCAAGTGT+TGG + chr8_1:36836822-36836841 None:intergenic 40.0%
ATAGCAACTGTCCTACATGT+TGG + chr8_1:36836903-36836922 None:intergenic 40.0%
AACATGTAGGACAGTTGCTA+TGG - chr8_1:36836902-36836921 Msa1191910:CDS 40.0%
! CTAGTAGATGGGTTCACTTT+AGG - chr8_1:36837019-36837038 Msa1191910:CDS 40.0%
ATACAAGAGCGGTTTGAAGA+AGG - chr8_1:36834788-36834807 Msa1191910:CDS 40.0%
!! GGTGTTGAAAGCATTATTGG+AGG - chr8_1:36834815-36834834 Msa1191910:intron 40.0%
TTGGGTACATCTGCAAGTAT+TGG + chr8_1:36834843-36834862 None:intergenic 40.0%
TCTTCAAGCGTAGGATTCTT+GGG + chr8_1:36834861-36834880 None:intergenic 40.0%
ATCTTCAAGCGTAGGATTCT+TGG + chr8_1:36834862-36834881 None:intergenic 40.0%
GAAGATGTGGAAACTCTCAT+TGG - chr8_1:36834876-36834895 Msa1191910:intron 40.0%
TATGAATACGGCAACTCTCA+AGG - chr8_1:36834968-36834987 Msa1191910:intron 40.0%
GAAGCACATCATCATCGTTA+AGG + chr8_1:36835229-36835248 None:intergenic 40.0%
! AATACGGCAGGCATTTCTTT+TGG + chr8_1:36835396-36835415 None:intergenic 40.0%
!! TGCTTTTGAAAGGAAGCTGA+GGG - chr8_1:36835623-36835642 Msa1191910:intron 40.0%
! ATTTTCAGCTCAATGGAACC+TGG - chr8_1:36835756-36835775 Msa1191910:intron 40.0%
TGTCTGATCTAATGGAAACC+AGG + chr8_1:36835777-36835796 None:intergenic 40.0%
TAGAGAAGCTTCAGAGAGTA+TGG + chr8_1:36835805-36835824 None:intergenic 40.0%
AACTAATCATTGGCCAACTC+AGG + chr8_1:36835881-36835900 None:intergenic 40.0%
! TTTCGCATTTTCTCGTTGGT+AGG - chr8_1:36835900-36835919 Msa1191910:intron 40.0%
GGGACAAAATGTATCTGCAT+TGG + chr8_1:36836223-36836242 None:intergenic 40.0%
! ACTCAAAAAGGAGAAAGCAC+CGG - chr8_1:36836272-36836291 Msa1191910:intron 40.0%
!!! AGAAAGCACCGGTTTTTTCA+TGG - chr8_1:36836283-36836302 Msa1191910:intron 40.0%
! GCATGTTTGGTGATCTCTAT+TGG - chr8_1:36836360-36836379 Msa1191910:intron 40.0%
! GTTTGGTGATCTCTATTGGT+CGG - chr8_1:36836364-36836383 Msa1191910:intron 40.0%
! TTTGGTGATCTCTATTGGTC+GGG - chr8_1:36836365-36836384 Msa1191910:intron 40.0%
ACATGTTCGGACAGAAATGA+TGG + chr8_1:36836507-36836526 None:intergenic 40.0%
! AGTCGAGCATATTTTGTCCT+TGG - chr8_1:36836620-36836639 Msa1191910:CDS 40.0%
TTGTTTGGTCCTTCAAGTGT+TGG + chr8_1:36836822-36836841 None:intergenic 40.0%
ATAGCAACTGTCCTACATGT+TGG + chr8_1:36836903-36836922 None:intergenic 40.0%
AACATGTAGGACAGTTGCTA+TGG - chr8_1:36836902-36836921 Msa1191910:CDS 40.0%
! CTAGTAGATGGGTTCACTTT+AGG - chr8_1:36837019-36837038 Msa1191910:CDS 40.0%
GAATCCTACGCTTGAAGATG+TGG - chr8_1:36834863-36834882 Msa1191910:intron 45.0%
GTTTCCACATCTTCAAGCGT+AGG + chr8_1:36834870-36834889 None:intergenic 45.0%
!! TTGATTGCAGGAGGAGTGTT+TGG - chr8_1:36835168-36835187 Msa1191910:intron 45.0%
!! TGATTGCAGGAGGAGTGTTT+GGG - chr8_1:36835169-36835188 Msa1191910:intron 45.0%
GGGCGTTCGAAATAATTCTC+AGG - chr8_1:36835256-36835275 Msa1191910:intron 45.0%
GCATGTGTGTTCAAGCACAA+GGG + chr8_1:36835511-36835530 None:intergenic 45.0%
TGCATGTGTGTTCAAGCACA+AGG + chr8_1:36835512-36835531 None:intergenic 45.0%
!! GTGCTTTTGAAAGGAAGCTG+AGG - chr8_1:36835622-36835641 Msa1191910:intron 45.0%
!! GCTTTTGAAAGGAAGCTGAG+GGG - chr8_1:36835624-36835643 Msa1191910:intron 45.0%
ATGATGAGACGAGTTCGACT+GGG + chr8_1:36835834-36835853 None:intergenic 45.0%
TATGATGAGACGAGTTCGAC+TGG + chr8_1:36835835-36835854 None:intergenic 45.0%
ACTTTGCAAGTCTCCTGAGT+TGG - chr8_1:36835865-36835884 Msa1191910:intron 45.0%
AGTATGCAGAAGGATACTGC+AGG - chr8_1:36835948-36835967 Msa1191910:intron 45.0%
TGAGCATAACGGCTTCCAAA+AGG + chr8_1:36836060-36836079 None:intergenic 45.0%
CAACAATTTCAAGAGGCGAG+AGG + chr8_1:36836146-36836165 None:intergenic 45.0%
! TCCTGATCAACAGCACTGAA+AGG - chr8_1:36836319-36836338 Msa1191910:intron 45.0%
! ACCTTTCAGTGCTGTTGATC+AGG + chr8_1:36836323-36836342 None:intergenic 45.0%
CTGTCCGAACATGTAATGCA+TGG - chr8_1:36836513-36836532 Msa1191910:intron 45.0%
ATGTAGGACAGTTGCTATGG+TGG - chr8_1:36836905-36836924 Msa1191910:CDS 45.0%
CACATTCTCTCAGTGGTTGT+TGG + chr8_1:36836971-36836990 None:intergenic 45.0%
CAACCACTGAGAGAATGTGA+TGG - chr8_1:36836972-36836991 Msa1191910:CDS 45.0%
ACTCCATCACATTCTCTCAG+TGG + chr8_1:36836978-36836997 None:intergenic 45.0%
GAATCCTACGCTTGAAGATG+TGG - chr8_1:36834863-36834882 Msa1191910:intron 45.0%
GTTTCCACATCTTCAAGCGT+AGG + chr8_1:36834870-36834889 None:intergenic 45.0%
!! TTGATTGCAGGAGGAGTGTT+TGG - chr8_1:36835168-36835187 Msa1191910:intron 45.0%
!! TGATTGCAGGAGGAGTGTTT+GGG - chr8_1:36835169-36835188 Msa1191910:intron 45.0%
GGGCGTTCGAAATAATTCTC+AGG - chr8_1:36835256-36835275 Msa1191910:intron 45.0%
GCATGTGTGTTCAAGCACAA+GGG + chr8_1:36835511-36835530 None:intergenic 45.0%
TGCATGTGTGTTCAAGCACA+AGG + chr8_1:36835512-36835531 None:intergenic 45.0%
!! GTGCTTTTGAAAGGAAGCTG+AGG - chr8_1:36835622-36835641 Msa1191910:intron 45.0%
!! GCTTTTGAAAGGAAGCTGAG+GGG - chr8_1:36835624-36835643 Msa1191910:intron 45.0%
ATGATGAGACGAGTTCGACT+GGG + chr8_1:36835834-36835853 None:intergenic 45.0%
TATGATGAGACGAGTTCGAC+TGG + chr8_1:36835835-36835854 None:intergenic 45.0%
ACTTTGCAAGTCTCCTGAGT+TGG - chr8_1:36835865-36835884 Msa1191910:intron 45.0%
AGTATGCAGAAGGATACTGC+AGG - chr8_1:36835948-36835967 Msa1191910:intron 45.0%
TGAGCATAACGGCTTCCAAA+AGG + chr8_1:36836060-36836079 None:intergenic 45.0%
CAACAATTTCAAGAGGCGAG+AGG + chr8_1:36836146-36836165 None:intergenic 45.0%
! TCCTGATCAACAGCACTGAA+AGG - chr8_1:36836319-36836338 Msa1191910:intron 45.0%
! ACCTTTCAGTGCTGTTGATC+AGG + chr8_1:36836323-36836342 None:intergenic 45.0%
CTGTCCGAACATGTAATGCA+TGG - chr8_1:36836513-36836532 Msa1191910:intron 45.0%
ATGTAGGACAGTTGCTATGG+TGG - chr8_1:36836905-36836924 Msa1191910:CDS 45.0%
CACATTCTCTCAGTGGTTGT+TGG + chr8_1:36836971-36836990 None:intergenic 45.0%
CAACCACTGAGAGAATGTGA+TGG - chr8_1:36836972-36836991 Msa1191910:CDS 45.0%
ACTCCATCACATTCTCTCAG+TGG + chr8_1:36836978-36836997 None:intergenic 45.0%
!!! TAGATTTTTTTAATATTATT+AGG + chr8_1:36836096-36836115 None:intergenic 5.0%
!!! TAGATTTTTTTAATATTATT+AGG + chr8_1:36836096-36836115 None:intergenic 5.0%
! GAAGGTGCGGAATACAAGAG+CGG - chr8_1:36834777-36834796 Msa1191910:CDS 50.0%
!! TGGGGCATCGTCACATTTCT+TGG - chr8_1:36835042-36835061 Msa1191910:intron 50.0%
CACAGTGCTTCAAGCAAACC+AGG + chr8_1:36835551-36835570 None:intergenic 50.0%
! TGGCTGCAAGTTCTAGCACT+AGG + chr8_1:36835594-36835613 None:intergenic 50.0%
!! CGCATTTTCTCGTTGGTAGG+TGG - chr8_1:36835903-36835922 Msa1191910:intron 50.0%
! TTCTCGTTGGTAGGTGGCAA+TGG - chr8_1:36835909-36835928 Msa1191910:intron 50.0%
! GAAGGTGCGGAATACAAGAG+CGG - chr8_1:36834777-36834796 Msa1191910:CDS 50.0%
!! TGGGGCATCGTCACATTTCT+TGG - chr8_1:36835042-36835061 Msa1191910:intron 50.0%
CACAGTGCTTCAAGCAAACC+AGG + chr8_1:36835551-36835570 None:intergenic 50.0%
! TGGCTGCAAGTTCTAGCACT+AGG + chr8_1:36835594-36835613 None:intergenic 50.0%
!! CGCATTTTCTCGTTGGTAGG+TGG - chr8_1:36835903-36835922 Msa1191910:intron 50.0%
! TTCTCGTTGGTAGGTGGCAA+TGG - chr8_1:36835909-36835928 Msa1191910:intron 50.0%
GAGCGGTTTGAAGAAGGCGA+AGG - chr8_1:36834794-36834813 Msa1191910:intron 55.0%
AAAGGAAGCTGAGGGGAGCT+GGG - chr8_1:36835631-36835650 Msa1191910:intron 55.0%
GCACTGAAAGGTTGAGCTCG+TGG - chr8_1:36836331-36836350 Msa1191910:intron 55.0%
AAGGTTGAGCTCGTGGCATG+TGG - chr8_1:36836338-36836357 Msa1191910:intron 55.0%
CTCGTGGCATGTGGCATGTT+TGG - chr8_1:36836347-36836366 Msa1191910:intron 55.0%
!! AAGTGTTGGTGCAGCGCAGA+GGG + chr8_1:36836808-36836827 None:intergenic 55.0%
TGCGCTGCACCAACACTTGA+AGG - chr8_1:36836810-36836829 Msa1191910:CDS 55.0%
GAGCGGTTTGAAGAAGGCGA+AGG - chr8_1:36834794-36834813 Msa1191910:intron 55.0%
AAAGGAAGCTGAGGGGAGCT+GGG - chr8_1:36835631-36835650 Msa1191910:intron 55.0%
GCACTGAAAGGTTGAGCTCG+TGG - chr8_1:36836331-36836350 Msa1191910:intron 55.0%
AAGGTTGAGCTCGTGGCATG+TGG - chr8_1:36836338-36836357 Msa1191910:intron 55.0%
CTCGTGGCATGTGGCATGTT+TGG - chr8_1:36836347-36836366 Msa1191910:intron 55.0%
!! AAGTGTTGGTGCAGCGCAGA+GGG + chr8_1:36836808-36836827 None:intergenic 55.0%
TGCGCTGCACCAACACTTGA+AGG - chr8_1:36836810-36836829 Msa1191910:CDS 55.0%
GAAAGGAAGCTGAGGGGAGC+TGG - chr8_1:36835630-36835649 Msa1191910:intron 60.0%
! GGTGCAGCGCAGAGGGTATA+AGG + chr8_1:36836801-36836820 None:intergenic 60.0%
!! CAAGTGTTGGTGCAGCGCAG+AGG + chr8_1:36836809-36836828 None:intergenic 60.0%
GAAAGGAAGCTGAGGGGAGC+TGG - chr8_1:36835630-36835649 Msa1191910:intron 60.0%
! GGTGCAGCGCAGAGGGTATA+AGG + chr8_1:36836801-36836820 None:intergenic 60.0%
!! CAAGTGTTGGTGCAGCGCAG+AGG + chr8_1:36836809-36836828 None:intergenic 60.0%
AGGGGAGCTGGGCCTACTAC+AGG - chr8_1:36835642-36835661 Msa1191910:intron 65.0%
AGGGGAGCTGGGCCTACTAC+AGG - chr8_1:36835642-36835661 Msa1191910:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 36834766 36837103 36834766 ID=Msa1191910;Name=Msa1191910
chr8_1 mRNA 36834766 36837103 36834766 ID=Msa1191910-mRNA-1;Parent=Msa1191910;Name=Msa1191910-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.5|0.2|0.8|0.25|0.4|5|0|169
chr8_1 exon 36837071 36837103 36837071 ID=Msa1191910-mRNA-1:exon:12219;Parent=Msa1191910-mRNA-1
chr8_1 exon 36836806 36837053 36836806 ID=Msa1191910-mRNA-1:exon:12218;Parent=Msa1191910-mRNA-1
chr8_1 exon 36836592 36836691 36836592 ID=Msa1191910-mRNA-1:exon:12217;Parent=Msa1191910-mRNA-1
chr8_1 exon 36835559 36835640 36835559 ID=Msa1191910-mRNA-1:exon:12216;Parent=Msa1191910-mRNA-1
chr8_1 exon 36834766 36834812 36834766 ID=Msa1191910-mRNA-1:exon:12215;Parent=Msa1191910-mRNA-1
chr8_1 CDS 36837071 36837103 36837071 ID=Msa1191910-mRNA-1:cds;Parent=Msa1191910-mRNA-1
chr8_1 CDS 36836806 36837053 36836806 ID=Msa1191910-mRNA-1:cds;Parent=Msa1191910-mRNA-1
chr8_1 CDS 36836592 36836691 36836592 ID=Msa1191910-mRNA-1:cds;Parent=Msa1191910-mRNA-1
chr8_1 CDS 36835559 36835640 36835559 ID=Msa1191910-mRNA-1:cds;Parent=Msa1191910-mRNA-1
chr8_1 CDS 36834766 36834812 36834766 ID=Msa1191910-mRNA-1:cds;Parent=Msa1191910-mRNA-1
Gene Sequence

>Msa1191910

ATGAGATGGGAGAAGGTGCGGAATACAAGAGCGGTGTTGAAAGCATTATTGGAGGATCCAATACTTGCAGATGTACCCAAGAATCCTACGCTTGAAGATGTGGAAACTCTCATTGGACTTGAATTGGGTAGTGCAATGCGAATTTCTGTTTTGAAATTGGATGCAACTTCGTTTGATGTGATTCTTATGAATACGGCAACTCTCAAGGATTTGAAACTTGCTATCAAGAAAAAAGTTAATTACATGGAACAATCTAGTATGGGGCATCGTCACATTTCTTGGAGGAGTGTTTGGGCTAATTATTGTTTGTCATTCGATAACAACAAGCTCCTTAACGATGATGATGTGCTTCAAAATTTGGGCGTTCGAAATAATTCTCAGATACATTTTGTCCCCTATGTCATGACAAAAGAATCTAGAAGACACTCAAAAAGGAGAAAGCACCGGTTTTTTCATGGCCTTACATTGGAGAATAAACTTGCAGATGTTCTTGAAGCAGAGTTAACATAG

Protein sequence

>Msa1191910

MRWEKVRNTRAVLKALLEDPILADVPKNPTLEDVETLIGLELGSAMRISVLKLDATSFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISWRSVWANYCLSFDNNKLLNDDDVLQNLGVRNNSQIHFVPYVMTKESRRHSKRRKHRFFHGLTLENKLADVLEAELT*