AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469910 MtrunA17_Chr3g0124551 99.692 325 1 0 1 325 1 325 0.0 665
Msa0469910 MtrunA17_Chr4g0063131 37.609 343 149 10 4 325 14 312 1.91e-63 203
Msa0469910 MtrunA17_Chr2g0334241 47.222 144 73 1 31 174 54 194 1.97e-37 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469910 AT2G22120.2 85.583 326 44 2 1 325 1 324 0.0 564
Msa0469910 AT2G22120.1 85.583 326 44 2 1 325 1 324 0.0 561
Msa0469910 AT1G11020.1 41.401 314 127 10 25 325 52 321 7.31e-62 200
Msa0469910 AT1G50440.5 48.936 141 66 3 32 169 60 197 3.67e-39 138
Msa0469910 AT1G50440.4 48.252 143 71 1 32 174 60 199 1.02e-38 137
Msa0469910 AT1G50440.3 48.252 143 71 1 32 174 60 199 1.75e-38 137
Msa0469910 AT1G50440.3 41.667 84 37 2 241 324 178 249 2.34e-11 63.5
Msa0469910 AT1G50440.1 48.252 143 71 1 32 174 60 199 1.75e-38 137
Msa0469910 AT1G50440.1 41.667 84 37 2 241 324 178 249 2.34e-11 63.5
Msa0469910 AT1G50440.2 48.252 143 71 1 32 174 60 199 1.75e-38 137
Msa0469910 AT1G50440.2 41.667 84 37 2 241 324 178 249 2.34e-11 63.5

Find 112 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCCTTGCTTGGCCTTTC+TGG -0.016773 3_3:+71931242 Msa0469910:CDS
TATTACCTCACTGGCATATT+TGG 0.173606 3_3:+71930949 Msa0469910:CDS
CCACTTACTCCTTGATATAT+TGG 0.218550 3_3:+71933399 Msa0469910:three_prime_UTR
GGTGGTTGTTTGGGAGGTGC+TGG 0.240913 3_3:+71932030 Msa0469910:CDS
ATAATGGCTTTGATTGTTCT+TGG 0.250383 3_3:+71932078 Msa0469910:CDS
TAGATGGTTACCAGCAAAAT+TGG 0.258741 3_3:+71930981 Msa0469910:CDS
TTGGGAGGTGCTGGGGAAGC+AGG 0.268603 3_3:+71932039 Msa0469910:CDS
GTATACTAATGTAAAGAAAA+TGG 0.288180 3_3:+71933330 Msa0469910:three_prime_UTR
ACTATCACATACTTGCTAAA+AGG 0.302128 3_3:+71932175 Msa0469910:CDS
TTGCCTTGCTTGGCCTTTCT+GGG 0.302492 3_3:+71931243 Msa0469910:CDS
GTGGTTGTTTGGGAGGTGCT+GGG 0.315040 3_3:+71932031 Msa0469910:CDS
AATTGTTGAACATGCTCAAT+TGG 0.315543 3_3:-71933082 None:intergenic
ATCGAGAGTGTTTGGATCAT+TGG 0.320049 3_3:+71929906 Msa0469910:CDS
AATGCTGAATAACATATTAC+AGG 0.335706 3_3:+71933366 Msa0469910:three_prime_UTR
CAGTGTATTGGTGGCAACTA+TGG 0.337443 3_3:+71932128 Msa0469910:CDS
AGAATTATGAATTTGATTAG+AGG 0.338703 3_3:-71928297 None:intergenic
CTATGGTGGGTCAACGGATA+TGG 0.338754 3_3:+71932145 Msa0469910:CDS
TATTTGGTTTATCTAATAGA+TGG 0.346647 3_3:+71930965 Msa0469910:CDS
ACAGAATGTGGTGGTTGTTT+GGG 0.350267 3_3:+71932021 Msa0469910:CDS
AAAATTGGCTTCGTATTCTC+TGG 0.357685 3_3:+71930996 Msa0469910:CDS
AACAGAATGTGGTGGTTGTT+TGG 0.360278 3_3:+71932020 Msa0469910:CDS
TGCCAGGCACTCTTTGTTTG+TGG 0.365795 3_3:+71931956 Msa0469910:CDS
GCTACCATTACTATTCATAA+TGG 0.370651 3_3:+71932062 Msa0469910:CDS
ACATGAACACGCAAATGATA+TGG 0.373142 3_3:-71930732 None:intergenic
ATATGTTCATCGAGAGTGTT+TGG 0.381405 3_3:+71929898 Msa0469910:CDS
CAAATGATATGGAGCCTTGC+AGG 0.383575 3_3:-71930721 None:intergenic
GAAAGATAGGTAGAGGTAGA+AGG 0.386299 3_3:+71928242 Msa0469910:five_prime_UTR
TCGAAGAGTTCGCAATGATT+TGG 0.388817 3_3:+71931286 Msa0469910:CDS
TGTCTTTGTTGCTGTCAACC+TGG 0.404337 3_3:+71931329 Msa0469910:CDS
TTTATTACAAACGGTGAAAT+GGG 0.415105 3_3:-71928129 None:intergenic
AGTTGAATAGAAAGAAAGAT+AGG 0.418929 3_3:+71928229 Msa0469910:five_prime_UTR
GTTCAACAATTGAAAACATT+GGG 0.429700 3_3:+71933094 Msa0469910:CDS
GAAGTACCTTTGCACTTACA+AGG 0.446339 3_3:-71929872 None:intergenic
TGGGAGGTGCTGGGGAAGCA+GGG 0.446534 3_3:+71932040 Msa0469910:CDS
TCCTCGATCGACCTCGAAGC+TGG 0.452350 3_3:+71928433 Msa0469910:CDS
GAAGGATCGACGGGAGGAAG+AGG 0.452406 3_3:-71928412 None:intergenic
GAGAGATGACAGGGTCTGAT+TGG 0.454470 3_3:+71933044 Msa0469910:CDS
CCAATATATCAAGGAGTAAG+TGG 0.457886 3_3:-71933399 None:intergenic
ATTGTTGAACATGCTCAATT+GGG 0.459333 3_3:-71933081 None:intergenic
ACATGCTCAATTGGGAGGGC+TGG 0.464574 3_3:-71933073 None:intergenic
AATCCGGCACTGGATTTGTT+CGG 0.468251 3_3:-71928461 None:intergenic
CATCAGTTTCGAGACAAATC+CGG 0.477726 3_3:-71928477 None:intergenic
TGGTTGTTTGGGAGGTGCTG+GGG 0.478836 3_3:+71932032 Msa0469910:CDS
CCATTGAAATTGAGCGGAGG+AGG 0.485770 3_3:-71928351 None:intergenic
GACTCATTCAAACTCATAAG+AGG 0.486898 3_3:-71933117 None:intergenic
GTTCGGAAGGACCAGCTTCG+AGG 0.486967 3_3:-71928444 None:intergenic
GTCCACAAACAAAGAGTGCC+TGG 0.491072 3_3:-71931958 None:intergenic
GGATCGACGGGAGGAAGAGG+TGG 0.492231 3_3:-71928409 None:intergenic
GTCTTTGTTGCTGTCAACCT+GGG 0.492579 3_3:+71931330 Msa0469910:CDS
ATGTTGCTGCTGATAGGAAA+TGG 0.495568 3_3:+71930751 Msa0469910:CDS
TGTGCTGACTGTCATTTGCC+AGG 0.495824 3_3:+71931940 Msa0469910:CDS
AAATTGGCTTCGTATTCTCT+GGG 0.495827 3_3:+71930997 Msa0469910:CDS
TTTCGAGACAAATCCGGCAC+TGG 0.502240 3_3:-71928471 None:intergenic
TGTTCAACAATTGAAAACAT+TGG 0.502580 3_3:+71933093 Msa0469910:CDS
TAGAGGTAGAAGGAGGAAGA+AGG 0.505789 3_3:+71928252 Msa0469910:five_prime_UTR
ATAGAAAGAAAGATAGGTAG+AGG 0.507946 3_3:+71928235 Msa0469910:five_prime_UTR
TATGCAGATTATTACCTCAC+TGG 0.509216 3_3:+71930940 Msa0469910:intron
GTGTTCATGTTGCTGCTGAT+AGG 0.512174 3_3:+71930745 Msa0469910:CDS
CTTGATATATTGGTGCTGCC+AGG 0.522999 3_3:+71933409 Msa0469910:three_prime_UTR
AAGTAATGAAGCACCCAGAA+AGG 0.537570 3_3:-71931256 None:intergenic
ACCACCACATTCTGTTGCCA+TGG 0.539867 3_3:-71932013 None:intergenic
GATGTCGATGGAGAGATGAC+AGG 0.540296 3_3:+71933034 Msa0469910:CDS
CAAAGACATAATTCTCTACA+AGG 0.540904 3_3:-71931314 None:intergenic
CCTCCTCCGCTCAATTTCAA+TGG 0.543191 3_3:+71928351 Msa0469910:exon
TGCTCAATTGGGAGGGCTGG+AGG 0.549699 3_3:-71933070 None:intergenic
GTCGATCGAGGAAGGATCGA+CGG 0.549972 3_3:-71928422 None:intergenic
CAGCTTACGAAAACAAAGGT+AGG 0.551469 3_3:-71933183 None:intergenic
GGATCATTGGCGATCTGTCA+AGG 0.559553 3_3:+71929919 Msa0469910:CDS
TAATGTAAAGAAAATGGAAG+AGG 0.560828 3_3:+71933336 Msa0469910:three_prime_UTR
AAAGCCATTATGAATAGTAA+TGG 0.561026 3_3:-71932066 None:intergenic
TGAAGAAAATAACAGTGGCC+TGG 0.564165 3_3:-71933427 None:intergenic
TCGATCGAGGAAGGATCGAC+GGG 0.570169 3_3:-71928421 None:intergenic
CTTCCGAACAAATCCAGTGC+CGG 0.570393 3_3:+71928458 Msa0469910:CDS
CTGGCAGCACCAATATATCA+AGG 0.571297 3_3:-71933408 None:intergenic
GTAGGGCGAGTCTACTTCTA+CGG 0.572314 3_3:-71933165 None:intergenic
TGCTCACTGCACTACCTGCA+AGG 0.573977 3_3:+71930707 Msa0469910:CDS
AAGAGGTGGGACGAGAGGTG+AGG 0.574463 3_3:-71928395 None:intergenic
AGTATTTAACAATAAAATTG+CGG 0.577606 3_3:+71933493 Msa0469910:three_prime_UTR
GGAGGAAGAGGTGGGACGAG+AGG 0.579989 3_3:-71928400 None:intergenic
GTTGAACATGCTCAATTGGG+AGG 0.580202 3_3:-71933078 None:intergenic
TGTGTTGAATTTCTGATACA+CGG 0.580231 3_3:+71933286 Msa0469910:three_prime_UTR
GCACCCAGAAAGGCCAAGCA+AGG 0.580394 3_3:-71931246 None:intergenic
TGCTAAAAGGATGTTAACAA+AGG 0.581562 3_3:+71932188 Msa0469910:CDS
GATCGACGGGAGGAAGAGGT+GGG 0.583686 3_3:-71928408 None:intergenic
TGTATTGGTGGCAACTATGG+TGG 0.584245 3_3:+71932131 Msa0469910:CDS
ATAGCTCCTTGTAAGTGCAA+AGG 0.586353 3_3:+71929866 Msa0469910:CDS
AGATAGGTAGAGGTAGAAGG+AGG 0.587353 3_3:+71928245 Msa0469910:five_prime_UTR
CGGATTTGTCTCGAAACTGA+TGG 0.587776 3_3:+71928478 Msa0469910:CDS
GCTTCGAGGTCGATCGAGGA+AGG 0.591650 3_3:-71928430 None:intergenic
GGTGTCTGATTCTGAGTGAT+CGG 0.596499 3_3:-71928374 None:intergenic
TATGTTGTTGAAGATGTCGA+TGG 0.604679 3_3:+71933022 Msa0469910:CDS
AGCTTACGAAAACAAAGGTA+GGG 0.606339 3_3:-71933182 None:intergenic
CGGCACTGGATTTGTTCGGA+AGG 0.606477 3_3:-71928457 None:intergenic
GAATGTGGTGGTTGTTTGGG+AGG 0.607809 3_3:+71932024 Msa0469910:CDS
ACCAGCTTCGAGGTCGATCG+AGG 0.612461 3_3:-71928434 None:intergenic
CATTGAAATTGAGCGGAGGA+GGG 0.613728 3_3:-71928350 None:intergenic
TAATCTACACTTTCACACAC+AGG 0.620246 3_3:-71928190 None:intergenic
TGGCAACTATGGTGGGTCAA+CGG 0.621902 3_3:+71932139 Msa0469910:CDS
CTGAGCTTCTATTATATATG+CGG 0.622061 3_3:+71931034 Msa0469910:CDS
ATCGAGGAAGGATCGACGGG+AGG 0.639041 3_3:-71928418 None:intergenic
GATCGGCCATTGAAATTGAG+CGG 0.641682 3_3:-71928357 None:intergenic
TTGAACATGCTCAATTGGGA+GGG 0.643417 3_3:-71933077 None:intergenic
ATGTCGATGGAGAGATGACA+GGG 0.646001 3_3:+71933035 Msa0469910:CDS
TGTAATCAAACTGAATTGAG+CGG 0.656179 3_3:-71933253 None:intergenic
AATTGGCTTCGTATTCTCTG+GGG 0.662271 3_3:+71930998 Msa0469910:CDS
GGAACCATGGCAACAGAATG+TGG 0.665999 3_3:+71932009 Msa0469910:CDS
CGGCCATTGAAATTGAGCGG+AGG 0.669127 3_3:-71928354 None:intergenic
AGAACAGCTTACGAAAACAA+AGG 0.678776 3_3:-71933187 None:intergenic
AACAGTGAAGAAAATAACAG+TGG 0.687560 3_3:-71933432 None:intergenic
GTATTGGTGGCAACTATGGT+GGG 0.696502 3_3:+71932132 Msa0469910:CDS
ATAAACCAAATATGCCAGTG+AGG 0.716327 3_3:-71930954 None:intergenic
ACCATGGCAACAGAATGTGG+TGG 0.804367 3_3:+71932012 Msa0469910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGAAATAATTGTTTAT+AGG + chr3_3:71928898-71928917 Msa0469910:intron 10.0%
!! TATTGAAATAATTGTTTATA+GGG + chr3_3:71928899-71928918 Msa0469910:intron 10.0%
!!! TTAACCTTTTTTAAAAATAT+AGG + chr3_3:71929459-71929478 Msa0469910:intron 10.0%
!!! AAGCAATTTTTTTTTTTTTT+GGG + chr3_3:71929730-71929749 Msa0469910:intron 10.0%
!! AAATAAATAAATTAAAACCT+TGG - chr3_3:71931897-71931916 None:intergenic 10.0%
!! ATAAATAAATATGTATCCAT+CGG - chr3_3:71929494-71929513 None:intergenic 15.0%
!!! GAAGCAATTTTTTTTTTTTT+TGG + chr3_3:71929729-71929748 Msa0469910:intron 15.0%
!!! AGCAATTTTTTTTTTTTTTG+GGG + chr3_3:71929731-71929750 Msa0469910:intron 15.0%
!! ATACATTTATACATTACAAT+CGG - chr3_3:71930886-71930905 None:intergenic 15.0%
!! TATATAGATTATCTAATTCA+GGG + chr3_3:71930903-71930922 Msa0469910:intron 15.0%
!! AAATCCTATATAATTAGTAA+AGG + chr3_3:71932366-71932385 Msa0469910:intron 15.0%
!! AATATTAATAATATCAGACA+GGG - chr3_3:71932601-71932620 None:intergenic 15.0%
!! AGTATTTAACAATAAAATTG+CGG + chr3_3:71933493-71933512 Msa0469910:three_prime_UTR 15.0%
!!! CTTTCCTTTTTTATTACAAA+CGG - chr3_3:71928141-71928160 None:intergenic 20.0%
!! AGAATTATGAATTTGATTAG+AGG - chr3_3:71928300-71928319 None:intergenic 20.0%
!! AATAAAAATCAGCAGAATTT+AGG - chr3_3:71928622-71928641 None:intergenic 20.0%
!!! TACAGTAGAATTTCATATTT+TGG + chr3_3:71929162-71929181 Msa0469910:intron 20.0%
!!! AACACTGCTTATTTTAAAAA+GGG + chr3_3:71929245-71929264 Msa0469910:intron 20.0%
!! GCATCAAATTACAAAATTTA+TGG - chr3_3:71929331-71929350 None:intergenic 20.0%
!!! CTAAACAAATTTTTTTACAG+AGG + chr3_3:71929396-71929415 Msa0469910:intron 20.0%
!!! GTGTCCTATATTTTTAAAAA+AGG - chr3_3:71929466-71929485 None:intergenic 20.0%
!!! AATGTCATTTTTAACTTTTC+CGG - chr3_3:71929613-71929632 None:intergenic 20.0%
!! ATTCCTGATTAATTATTACT+AGG + chr3_3:71930065-71930084 Msa0469910:intron 20.0%
!! ATTAATTATTACTAGGAACT+AGG + chr3_3:71930072-71930091 Msa0469910:intron 20.0%
!! ATCATTGTTTAATTAATCAG+TGG - chr3_3:71930172-71930191 None:intergenic 20.0%
!!! ATGTTTACCTTCTTTATTTT+TGG + chr3_3:71930512-71930531 Msa0469910:intron 20.0%
!! CAAATTACCAAAAATAAAGA+AGG - chr3_3:71930522-71930541 None:intergenic 20.0%
!! AAAAATAGACAAAATATCTC+TGG - chr3_3:71930805-71930824 None:intergenic 20.0%
!!! AGATATTTTGTCTATTTTTC+TGG + chr3_3:71930806-71930825 Msa0469910:CDS 20.0%
!! GTATATAGATTATCTAATTC+AGG + chr3_3:71930902-71930921 Msa0469910:intron 20.0%
!!! TATTTGGTTTATCTAATAGA+TGG + chr3_3:71930965-71930984 Msa0469910:CDS 20.0%
!! ATATACAATATCATCATCAT+TGG - chr3_3:71931517-71931536 None:intergenic 20.0%
!!! AAGCACTTTTATATTTTGAA+GGG - chr3_3:71931631-71931650 None:intergenic 20.0%
!! ATTCTAAATAAACAAAGTGA+CGG - chr3_3:71932344-71932363 None:intergenic 20.0%
!! TCTACCTTTACTAATTATAT+AGG - chr3_3:71932373-71932392 None:intergenic 20.0%
!! GAATATTAATAATATCAGAC+AGG - chr3_3:71932602-71932621 None:intergenic 20.0%
!! TATCCTTAATAATAATTGCA+TGG + chr3_3:71932929-71932948 Msa0469910:intron 20.0%
!! GTATACTAATGTAAAGAAAA+TGG + chr3_3:71933330-71933349 Msa0469910:three_prime_UTR 20.0%
!!! TTCCATTTTACTCAAAATAA+GGG - chr3_3:71933531-71933550 None:intergenic 20.0%
!!! TTTCCATTTTACTCAAAATA+AGG - chr3_3:71933532-71933551 None:intergenic 20.0%
! TTCACCGTTTGTAATAAAAA+AGG + chr3_3:71928134-71928153 Msa0469910:five_prime_UTR 25.0%
! AGTTGAATAGAAAGAAAGAT+AGG + chr3_3:71928229-71928248 Msa0469910:five_prime_UTR 25.0%
! TGAAATTCGAAAGTTGAAAA+GGG - chr3_3:71928525-71928544 None:intergenic 25.0%
! ATGAAATTCGAAAGTTGAAA+AGG - chr3_3:71928526-71928545 None:intergenic 25.0%
!! CTTTCGAATTTCATTTTGTT+AGG + chr3_3:71928532-71928551 Msa0469910:intron 25.0%
! ACAATATCTTGATCATTGAT+TGG + chr3_3:71928691-71928710 Msa0469910:intron 25.0%
!! CAATATCTTGATCATTGATT+GGG + chr3_3:71928692-71928711 Msa0469910:intron 25.0%
!! TCCTAACAACATTAGTTTAA+GGG - chr3_3:71928785-71928804 None:intergenic 25.0%
! CATACCTGAACTAATTATAA+CGG - chr3_3:71928813-71928832 None:intergenic 25.0%
! TGAAATAATTGTTTATAGGG+AGG + chr3_3:71928902-71928921 Msa0469910:intron 25.0%
! ACTTCTTAAAGATGATTCTT+GGG - chr3_3:71929061-71929080 None:intergenic 25.0%
!!! AGTAGTTATTTTTACCTAGA+AGG + chr3_3:71929086-71929105 Msa0469910:intron 25.0%
! TACTGTATAATTTCTACACA+TGG - chr3_3:71929149-71929168 None:intergenic 25.0%
!!! CAACACTGCTTATTTTAAAA+AGG + chr3_3:71929244-71929263 Msa0469910:intron 25.0%
! TTTGTAATTTGATGCATTGA+AGG + chr3_3:71929336-71929355 Msa0469910:intron 25.0%
!!! ATTTGAAGATGATTTGGTTT+TGG - chr3_3:71929363-71929382 None:intergenic 25.0%
! CTTGTAATTTGAAGATGATT+TGG - chr3_3:71929369-71929388 None:intergenic 25.0%
! TATATAAATTTCTCGTCGTT+TGG - chr3_3:71930003-71930022 None:intergenic 25.0%
! AAGTTGTTCTTATACTATGA+TGG - chr3_3:71930033-71930052 None:intergenic 25.0%
! GTTCCTAGTAATAATTAATC+AGG - chr3_3:71930071-71930090 None:intergenic 25.0%
! TCATGATATTCAACGAATTA+CGG - chr3_3:71930258-71930277 None:intergenic 25.0%
!!! TTTCGATTTCTTTTGAGAAA+TGG - chr3_3:71930353-71930372 None:intergenic 25.0%
!! GTGTTTTCAATTTTATAACC+TGG + chr3_3:71930541-71930560 Msa0469910:intron 25.0%
! GTATATAATACAGAATATCC+AGG - chr3_3:71930562-71930581 None:intergenic 25.0%
! AGGTAATAATCTGCATAAAA+AGG - chr3_3:71930937-71930956 None:intergenic 25.0%
! CTTATATGATATTCTTATCC+AGG + chr3_3:71931090-71931109 Msa0469910:intron 25.0%
!! AACTGGTAACATTTTATATG+TGG - chr3_3:71931164-71931183 None:intergenic 25.0%
! TCAGTAATTCATAACAAAAC+TGG - chr3_3:71931181-71931200 None:intergenic 25.0%
! TGAATTACTGAATTTCATGT+TGG + chr3_3:71931190-71931209 Msa0469910:intron 25.0%
! AAGCAAGGCAAAAAATAATA+GGG - chr3_3:71931234-71931253 None:intergenic 25.0%
! TTATATATAATGGCAATACC+AGG + chr3_3:71931466-71931485 Msa0469910:intron 25.0%
!!! CAAGCACTTTTATATTTTGA+AGG - chr3_3:71931632-71931651 None:intergenic 25.0%
!!! GTCTATTTTGGTCTAAATTT+TGG + chr3_3:71931732-71931751 Msa0469910:intron 25.0%
! ACATAAATATAAAACTCAGC+TGG + chr3_3:71931787-71931806 Msa0469910:intron 25.0%
! AAAGCCATTATGAATAGTAA+TGG - chr3_3:71932069-71932088 None:intergenic 25.0%
!! TTGGACTTTTTACAGTAATT+GGG + chr3_3:71932097-71932116 Msa0469910:CDS 25.0%
!!! AAGTTTTTGATTGAGATTCT+TGG - chr3_3:71932397-71932416 None:intergenic 25.0%
!! ATTGAAAGGATATTTCTGAT+GGG + chr3_3:71932469-71932488 Msa0469910:intron 25.0%
! TATGTAATAAGGGGAAATTT+GGG - chr3_3:71932700-71932719 None:intergenic 25.0%
! TTTCGGATAGTATGTAATAA+GGG - chr3_3:71932710-71932729 None:intergenic 25.0%
! AAATCAACAATTCAAGACAA+TGG - chr3_3:71932972-71932991 None:intergenic 25.0%
! TGTTCAACAATTGAAAACAT+TGG + chr3_3:71933093-71933112 Msa0469910:CDS 25.0%
! GTTCAACAATTGAAAACATT+GGG + chr3_3:71933094-71933113 Msa0469910:CDS 25.0%
! TAATGTAAAGAAAATGGAAG+AGG + chr3_3:71933336-71933355 Msa0469910:three_prime_UTR 25.0%
! AATGCTGAATAACATATTAC+AGG + chr3_3:71933366-71933385 Msa0469910:three_prime_UTR 25.0%
!!! TACCCTTATTTTGAGTAAAA+TGG + chr3_3:71933526-71933545 Msa0469910:three_prime_UTR 25.0%
ATAGAAAGAAAGATAGGTAG+AGG + chr3_3:71928235-71928254 Msa0469910:five_prime_UTR 30.0%
TGGACTCAAATATAAGCAAA+TGG + chr3_3:71928731-71928750 Msa0469910:intron 30.0%
! CATTAGTTTAAGGGAACTAT+CGG - chr3_3:71928776-71928795 None:intergenic 30.0%
TCCCTTAAACTAATGTTGTT+AGG + chr3_3:71928781-71928800 Msa0469910:intron 30.0%
! CTCCTAACAACATTAGTTTA+AGG - chr3_3:71928786-71928805 None:intergenic 30.0%
ATGACCGTTATAATTAGTTC+AGG + chr3_3:71928806-71928825 Msa0469910:intron 30.0%
CGTTATAATTAGTTCAGGTA+TGG + chr3_3:71928811-71928830 Msa0469910:intron 30.0%
TACACACCCCATAAAAAAAT+TGG - chr3_3:71928879-71928898 None:intergenic 30.0%
TATATATAGCAATAGTCGCA+AGG + chr3_3:71928925-71928944 Msa0469910:intron 30.0%
CACTTCTTAAAGATGATTCT+TGG - chr3_3:71929062-71929081 None:intergenic 30.0%
TCAGAAATGACCTATATTAC+AGG + chr3_3:71929423-71929442 Msa0469910:intron 30.0%
CAGAAATGACCTATATTACA+GGG + chr3_3:71929424-71929443 Msa0469910:intron 30.0%
AGAAATGACCTATATTACAG+GGG + chr3_3:71929425-71929444 Msa0469910:intron 30.0%
TAGTAGTGATGATCAATGAA+TGG - chr3_3:71929657-71929676 None:intergenic 30.0%
ATTATTACTAGGAACTAGGA+AGG + chr3_3:71930076-71930095 Msa0469910:intron 30.0%
TTATTACTAGGAACTAGGAA+GGG + chr3_3:71930077-71930096 Msa0469910:intron 30.0%
CATGATATTCAACGAATTAC+GGG - chr3_3:71930257-71930276 None:intergenic 30.0%
!! ATTTCTTTTGAGAAATGGAG+AGG - chr3_3:71930348-71930367 None:intergenic 30.0%
AGAAATCGAAAGATCCATTT+AGG + chr3_3:71930362-71930381 Msa0469910:intron 30.0%
GGCTTCAAAAACTAAACTTT+AGG - chr3_3:71930618-71930637 None:intergenic 30.0%
! TAAGCGTTGTATGTGTTAAA+TGG + chr3_3:71930658-71930677 Msa0469910:intron 30.0%
GACGAAAAAACGAAATTTCA+AGG - chr3_3:71930781-71930800 None:intergenic 30.0%
CTGAGCTTCTATTATATATG+CGG + chr3_3:71931034-71931053 Msa0469910:CDS 30.0%
! GGTAACATTTTATATGTGGA+AGG - chr3_3:71931160-71931179 None:intergenic 30.0%
CAAGCAAGGCAAAAAATAAT+AGG - chr3_3:71931235-71931254 None:intergenic 30.0%
!!! CTATTATTTTTTGCCTTGCT+TGG + chr3_3:71931233-71931252 Msa0469910:CDS 30.0%
CAAAGACATAATTCTCTACA+AGG - chr3_3:71931317-71931336 None:intergenic 30.0%
!! TGTGTTTTTAACAGTGTCAA+AGG - chr3_3:71931385-71931404 None:intergenic 30.0%
ATTGCTTTAGCACAAAATAG+CGG + chr3_3:71931548-71931567 Msa0469910:intron 30.0%
! ACTGCACTTACATTTTGTAA+TGG + chr3_3:71931576-71931595 Msa0469910:intron 30.0%
! CTGCACTTACATTTTGTAAT+GGG + chr3_3:71931577-71931596 Msa0469910:intron 30.0%
TATTATGCCAGAACTATGAT+TGG + chr3_3:71931695-71931714 Msa0469910:intron 30.0%
!!! ATGGTATTTGGTGTCTATTT+TGG + chr3_3:71931720-71931739 Msa0469910:intron 30.0%
TATGTGATGCATCTTATTGT+TGG + chr3_3:71931831-71931850 Msa0469910:intron 30.0%
CTAATGATGATTAATGACCA+AGG + chr3_3:71931877-71931896 Msa0469910:intron 30.0%
GCTACCATTACTATTCATAA+TGG + chr3_3:71932062-71932081 Msa0469910:CDS 30.0%
!! ATAATGGCTTTGATTGTTCT+TGG + chr3_3:71932078-71932097 Msa0469910:CDS 30.0%
! CTTGGACTTTTTACAGTAAT+TGG + chr3_3:71932096-71932115 Msa0469910:CDS 30.0%
! TGGGATATTTTACAGTGTAT+TGG + chr3_3:71932116-71932135 Msa0469910:CDS 30.0%
! GATATTTTACAGTGTATTGG+TGG + chr3_3:71932119-71932138 Msa0469910:CDS 30.0%
! ACTATCACATACTTGCTAAA+AGG + chr3_3:71932175-71932194 Msa0469910:CDS 30.0%
TGCTAAAAGGATGTTAACAA+AGG + chr3_3:71932188-71932207 Msa0469910:CDS 30.0%
! GATGTTAACAAAGGTTTGTT+TGG + chr3_3:71932197-71932216 Msa0469910:intron 30.0%
TTTCTCATTTACTGTGTCTT+TGG + chr3_3:71932225-71932244 Msa0469910:intron 30.0%
GCTAATTGCATAAATGCATT+AGG - chr3_3:71932313-71932332 None:intergenic 30.0%
! GATTGAAAGGATATTTCTGA+TGG + chr3_3:71932468-71932487 Msa0469910:intron 30.0%
ATTAATAATATCAGACAGGG+AGG - chr3_3:71932598-71932617 None:intergenic 30.0%
ATGTAATAAGGGGAAATTTG+GGG - chr3_3:71932699-71932718 None:intergenic 30.0%
GTATGTAATAAGGGGAAATT+TGG - chr3_3:71932701-71932720 None:intergenic 30.0%
TTCGGATAGTATGTAATAAG+GGG - chr3_3:71932709-71932728 None:intergenic 30.0%
GTTTCGGATAGTATGTAATA+AGG - chr3_3:71932711-71932730 None:intergenic 30.0%
GCACCATGCAATTATTATTA+AGG - chr3_3:71932935-71932954 None:intergenic 30.0%
ATTGTTGAACATGCTCAATT+GGG - chr3_3:71933084-71933103 None:intergenic 30.0%
AATTGTTGAACATGCTCAAT+TGG - chr3_3:71933085-71933104 None:intergenic 30.0%
TGTAATCAAACTGAATTGAG+CGG - chr3_3:71933256-71933275 None:intergenic 30.0%
TGTGTTGAATTTCTGATACA+CGG + chr3_3:71933286-71933305 Msa0469910:three_prime_UTR 30.0%
AACAGTGAAGAAAATAACAG+TGG - chr3_3:71933435-71933454 None:intergenic 30.0%
TAATCTACACTTTCACACAC+AGG - chr3_3:71928193-71928212 None:intergenic 35.0%
CTATTATTTCCGATAACCGT+TGG - chr3_3:71928956-71928975 None:intergenic 35.0%
GAAATGACCTATATTACAGG+GGG + chr3_3:71929426-71929445 Msa0469910:intron 35.0%
! TGTTTTACCCCCTGTAATAT+AGG - chr3_3:71929436-71929455 None:intergenic 35.0%
AAATATGTATCCATCGGTGT+TGG - chr3_3:71929488-71929507 None:intergenic 35.0%
CATTCATCCATCTACTATAC+CGG + chr3_3:71929591-71929610 Msa0469910:intron 35.0%
! AACTTTTCCGGTATAGTAGA+TGG - chr3_3:71929601-71929620 None:intergenic 35.0%
ACTCCTTAGACACTTCTATA+GGG - chr3_3:71929695-71929714 None:intergenic 35.0%
TACCTGAGAAGGAAACAAAA+CGG - chr3_3:71929838-71929857 None:intergenic 35.0%
!! TTTTGTTTCCTTCTCAGGTA+GGG + chr3_3:71929838-71929857 Msa0469910:intron 35.0%
!! ATATGTTCATCGAGAGTGTT+TGG + chr3_3:71929898-71929917 Msa0469910:CDS 35.0%
AGTCAGTATCTTAAACTGAC+TGG + chr3_3:71930112-71930131 Msa0469910:intron 35.0%
TGAATATCATGACACTGCAA+AGG + chr3_3:71930266-71930285 Msa0469910:intron 35.0%
AAATGAGCAAGGTATAGACA+GGG - chr3_3:71930472-71930491 None:intergenic 35.0%
TTCTTTGACTGAAATGAGCA+AGG - chr3_3:71930483-71930502 None:intergenic 35.0%
TGCTCATTTCAGTCAAAGAA+AGG + chr3_3:71930483-71930502 Msa0469910:intron 35.0%
TGTTAAATGGTGTACTTTGC+AGG + chr3_3:71930671-71930690 Msa0469910:intron 35.0%
ACATGAACACGCAAATGATA+TGG - chr3_3:71930735-71930754 None:intergenic 35.0%
CAATCGGATAAGTATGTAGA+TGG - chr3_3:71930870-71930889 None:intergenic 35.0%
TATGCAGATTATTACCTCAC+TGG + chr3_3:71930940-71930959 Msa0469910:intron 35.0%
TATTACCTCACTGGCATATT+TGG + chr3_3:71930949-71930968 Msa0469910:CDS 35.0%
ATAAACCAAATATGCCAGTG+AGG - chr3_3:71930957-71930976 None:intergenic 35.0%
TAGATGGTTACCAGCAAAAT+TGG + chr3_3:71930981-71931000 Msa0469910:CDS 35.0%
! AAAATTGGCTTCGTATTCTC+TGG + chr3_3:71930996-71931015 Msa0469910:CDS 35.0%
! AAATTGGCTTCGTATTCTCT+GGG + chr3_3:71930997-71931016 Msa0469910:CDS 35.0%
AAGGAGAAAACTCTGAACTT+GGG - chr3_3:71931141-71931160 None:intergenic 35.0%
! ATGTTGGCATTTTCAAATGC+AGG + chr3_3:71931206-71931225 Msa0469910:intron 35.0%
! TTTTTAACAGTGTCAAAGGC+TGG - chr3_3:71931381-71931400 None:intergenic 35.0%
TTGTGCTAAAGCAATGAGAA+TGG - chr3_3:71931543-71931562 None:intergenic 35.0%
!! TATAAAAGTGCTTGTCGTTC+TGG + chr3_3:71931638-71931657 Msa0469910:intron 35.0%
CTATGATTGGAGATGGTATT+TGG + chr3_3:71931708-71931727 Msa0469910:intron 35.0%
!! AAACAAAGTGACGGATAACT+GGG - chr3_3:71932335-71932354 None:intergenic 35.0%
!! TAAACAAAGTGACGGATAAC+TGG - chr3_3:71932336-71932355 None:intergenic 35.0%
CACTTCAAATCTCGATTGAA+AGG + chr3_3:71932455-71932474 Msa0469910:intron 35.0%
TCACATGCATTGTTCTGTAT+GGG + chr3_3:71932536-71932555 Msa0469910:intron 35.0%
TGTAATAAGGGGAAATTTGG+GGG - chr3_3:71932698-71932717 None:intergenic 35.0%
AAGAAATGGAAGAGCAATAG+GGG - chr3_3:71932832-71932851 None:intergenic 35.0%
GAAGAAATGGAAGAGCAATA+GGG - chr3_3:71932833-71932852 None:intergenic 35.0%
AATTGTACCACAGGAAGAAA+TGG - chr3_3:71932846-71932865 None:intergenic 35.0%
CTGTGGTACAATTTAGTCAT+GGG + chr3_3:71932853-71932872 Msa0469910:intron 35.0%
AAAATGTCTGTAATGCTCAC+TGG - chr3_3:71932900-71932919 None:intergenic 35.0%
GACAATGGCAGAATATTTCA+GGG - chr3_3:71932957-71932976 None:intergenic 35.0%
AGACAATGGCAGAATATTTC+AGG - chr3_3:71932958-71932977 None:intergenic 35.0%
! CTGTTGTTACTTCTCATCAT+AGG + chr3_3:71932997-71933016 Msa0469910:intron 35.0%
TATGTTGTTGAAGATGTCGA+TGG + chr3_3:71933022-71933041 Msa0469910:CDS 35.0%
GACTCATTCAAACTCATAAG+AGG - chr3_3:71933120-71933139 None:intergenic 35.0%
AGCTTACGAAAACAAAGGTA+GGG - chr3_3:71933185-71933204 None:intergenic 35.0%
AGAACAGCTTACGAAAACAA+AGG - chr3_3:71933190-71933209 None:intergenic 35.0%
CCAATATATCAAGGAGTAAG+TGG - chr3_3:71933402-71933421 None:intergenic 35.0%
CCACTTACTCCTTGATATAT+TGG + chr3_3:71933399-71933418 Msa0469910:three_prime_UTR 35.0%
GAAAGATAGGTAGAGGTAGA+AGG + chr3_3:71928242-71928261 Msa0469910:five_prime_UTR 40.0%
CATCAGTTTCGAGACAAATC+CGG - chr3_3:71928480-71928499 None:intergenic 40.0%
! TGGGCTTTGATTCGAATTGT+TGG + chr3_3:71928711-71928730 Msa0469910:intron 40.0%
!!! TCAGGGGGCCAATTTTTTTA+TGG + chr3_3:71928868-71928887 Msa0469910:intron 40.0%
!!! CAGGGGGCCAATTTTTTTAT+GGG + chr3_3:71928869-71928888 Msa0469910:intron 40.0%
!!! AGGGGGCCAATTTTTTTATG+GGG + chr3_3:71928870-71928889 Msa0469910:intron 40.0%
ATATAGCAATAGTCGCAAGG+AGG + chr3_3:71928928-71928947 Msa0469910:intron 40.0%
TATAGCAATAGTCGCAAGGA+GGG + chr3_3:71928929-71928948 Msa0469910:intron 40.0%
ACTCAACACATACTCCTTCT+AGG - chr3_3:71929103-71929122 None:intergenic 40.0%
! TAGAAGGAGTATGTGTTGAG+TGG + chr3_3:71929102-71929121 Msa0469910:intron 40.0%
GTTCATGCTTCATAGCTCAA+CGG - chr3_3:71929208-71929227 None:intergenic 40.0%
ATGAAGCATGAACTTCGACA+TGG + chr3_3:71929215-71929234 Msa0469910:intron 40.0%
TGAGCCAATTTCGGTTTACA+GGG - chr3_3:71929288-71929307 None:intergenic 40.0%
TTGAGCCAATTTCGGTTTAC+AGG - chr3_3:71929289-71929308 None:intergenic 40.0%
CTTGTGGTTTGAGCCAATTT+CGG - chr3_3:71929297-71929316 None:intergenic 40.0%
! GAAATTGGCTCAAACCACAA+GGG + chr3_3:71929296-71929315 Msa0469910:intron 40.0%
! AAATTGGCTCAAACCACAAG+GGG + chr3_3:71929297-71929316 Msa0469910:intron 40.0%
!! AAGCCCTATAGAAGTGTCTA+AGG + chr3_3:71929689-71929708 Msa0469910:intron 40.0%
CACTCCTTAGACACTTCTAT+AGG - chr3_3:71929696-71929715 None:intergenic 40.0%
!!! TACCGTTTTGTTTCCTTCTC+AGG + chr3_3:71929833-71929852 Msa0469910:intron 40.0%
!!! GTTTTGTTTCCTTCTCAGGT+AGG + chr3_3:71929837-71929856 Msa0469910:intron 40.0%
TATGAAATCCCTACCTGAGA+AGG - chr3_3:71929849-71929868 None:intergenic 40.0%
ATAGCTCCTTGTAAGTGCAA+AGG + chr3_3:71929866-71929885 Msa0469910:CDS 40.0%
! GAAGTACCTTTGCACTTACA+AGG - chr3_3:71929875-71929894 None:intergenic 40.0%
!! ATCGAGAGTGTTTGGATCAT+TGG + chr3_3:71929906-71929925 Msa0469910:CDS 40.0%
GGGATAGAGAGATAACTGAA+GGG - chr3_3:71930309-71930328 None:intergenic 40.0%
TGGGATAGAGAGATAACTGA+AGG - chr3_3:71930310-71930329 None:intergenic 40.0%
TCAGTTATCTCTCTATCCCA+TGG + chr3_3:71930310-71930329 Msa0469910:intron 40.0%
GAGGATCTCAACTTAACCAT+GGG - chr3_3:71930329-71930348 None:intergenic 40.0%
AGAGGATCTCAACTTAACCA+TGG - chr3_3:71930330-71930349 None:intergenic 40.0%
! GATCCATTTAGGACAGAGAT+AGG + chr3_3:71930373-71930392 Msa0469910:intron 40.0%
GAGAGATAGACACAAATGAG+AGG - chr3_3:71930404-71930423 None:intergenic 40.0%
TCGTTTGGAGAGCTCTATTT+AGG - chr3_3:71930428-71930447 None:intergenic 40.0%
GAGATCCTCTACAATTCGTT+TGG - chr3_3:71930443-71930462 None:intergenic 40.0%
AATGAGCAAGGTATAGACAG+GGG - chr3_3:71930471-71930490 None:intergenic 40.0%
GAAATGAGCAAGGTATAGAC+AGG - chr3_3:71930473-71930492 None:intergenic 40.0%
! AGCAGACTATAAAGTGGGTT+GGG - chr3_3:71930639-71930658 None:intergenic 40.0%
TAGCAGACTATAAAGTGGGT+TGG - chr3_3:71930640-71930659 None:intergenic 40.0%
CGCTTAGCAGACTATAAAGT+GGG - chr3_3:71930644-71930663 None:intergenic 40.0%
ACGCTTAGCAGACTATAAAG+TGG - chr3_3:71930645-71930664 None:intergenic 40.0%
AAATGGTGTACTTTGCAGGA+AGG + chr3_3:71930675-71930694 Msa0469910:intron 40.0%
ATGTTGCTGCTGATAGGAAA+TGG + chr3_3:71930751-71930770 Msa0469910:CDS 40.0%
GAAACAGTTAACCTACAAGC+TGG - chr3_3:71930836-71930855 None:intergenic 40.0%
GTTAACTGTTTCCATCCATC+TGG + chr3_3:71930844-71930863 Msa0469910:intron 40.0%
TAAGTATGTAGATGGCCAGA+TGG - chr3_3:71930862-71930881 None:intergenic 40.0%
! GAATACGAAGCCAATTTTGC+TGG - chr3_3:71930994-71931013 None:intergenic 40.0%
! AATTGGCTTCGTATTCTCTG+GGG + chr3_3:71930998-71931017 Msa0469910:CDS 40.0%
GGAGAAAAGGAGAAAATTCC+TGG - chr3_3:71931111-71931130 None:intergenic 40.0%
AGGAGAAAACTCTGAACTTG+GGG - chr3_3:71931140-71931159 None:intergenic 40.0%
GAAGGAGAAAACTCTGAACT+TGG - chr3_3:71931142-71931161 None:intergenic 40.0%
! AAGTAATGAAGCACCCAGAA+AGG - chr3_3:71931259-71931278 None:intergenic 40.0%
TCGAAGAGTTCGCAATGATT+TGG + chr3_3:71931286-71931305 Msa0469910:CDS 40.0%
! TAAAATCAGTGCTGTTACCC+AGG - chr3_3:71931350-71931369 None:intergenic 40.0%
ACCATCTCCAATCATAGTTC+TGG - chr3_3:71931705-71931724 None:intergenic 40.0%
! TGATTGCACTGCATGTTTTG+AGG + chr3_3:71931981-71932000 Msa0469910:CDS 40.0%
!! GATTGCACTGCATGTTTTGA+GGG + chr3_3:71931982-71932001 Msa0469910:CDS 40.0%
AACAGAATGTGGTGGTTGTT+TGG + chr3_3:71932020-71932039 Msa0469910:CDS 40.0%
ACAGAATGTGGTGGTTGTTT+GGG + chr3_3:71932021-71932040 Msa0469910:CDS 40.0%
GTCACATGCATTGTTCTGTA+TGG + chr3_3:71932535-71932554 Msa0469910:intron 40.0%
CACATGCATTGTTCTGTATG+GGG + chr3_3:71932537-71932556 Msa0469910:intron 40.0%
CAGATGGGACAGAATTGTTT+CGG - chr3_3:71932727-71932746 None:intergenic 40.0%
AACTTGCATATGCAGCAGAT+GGG - chr3_3:71932742-71932761 None:intergenic 40.0%
AAACTTGCATATGCAGCAGA+TGG - chr3_3:71932743-71932762 None:intergenic 40.0%
TGTCACCAAGGATCAACTTT+GGG - chr3_3:71932780-71932799 None:intergenic 40.0%
ATGTCACCAAGGATCAACTT+TGG - chr3_3:71932781-71932800 None:intergenic 40.0%
GGAAGAAATGGAAGAGCAAT+AGG - chr3_3:71932834-71932853 None:intergenic 40.0%
CCATGACTAAATTGTACCAC+AGG - chr3_3:71932855-71932874 None:intergenic 40.0%
CCTGTGGTACAATTTAGTCA+TGG + chr3_3:71932852-71932871 Msa0469910:intron 40.0%
TGGTACAATTTAGTCATGGG+AGG + chr3_3:71932856-71932875 Msa0469910:intron 40.0%
GGTACAATTTAGTCATGGGA+GGG + chr3_3:71932857-71932876 Msa0469910:intron 40.0%
TTGAACATGCTCAATTGGGA+GGG - chr3_3:71933080-71933099 None:intergenic 40.0%
CAGCTTACGAAAACAAAGGT+AGG - chr3_3:71933186-71933205 None:intergenic 40.0%
TGAAGAAAATAACAGTGGCC+TGG - chr3_3:71933430-71933449 None:intergenic 40.0%
AGATAGGTAGAGGTAGAAGG+AGG + chr3_3:71928245-71928264 Msa0469910:five_prime_UTR 45.0%
TAGAGGTAGAAGGAGGAAGA+AGG + chr3_3:71928252-71928271 Msa0469910:five_prime_UTR 45.0%
CATTGAAATTGAGCGGAGGA+GGG - chr3_3:71928353-71928372 None:intergenic 45.0%
GATCGGCCATTGAAATTGAG+CGG - chr3_3:71928360-71928379 None:intergenic 45.0%
GGTGTCTGATTCTGAGTGAT+CGG - chr3_3:71928377-71928396 None:intergenic 45.0%
! AATCCGGCACTGGATTTGTT+CGG - chr3_3:71928464-71928483 None:intergenic 45.0%
CGGATTTGTCTCGAAACTGA+TGG + chr3_3:71928478-71928497 Msa0469910:CDS 45.0%
!! TTCAGGTATGGCTTTGTGAG+AGG + chr3_3:71928823-71928842 Msa0469910:intron 45.0%
!! TCAGGTATGGCTTTGTGAGA+GGG + chr3_3:71928824-71928843 Msa0469910:intron 45.0%
TTTGTGAGAGGGTGAAGTGA+CGG + chr3_3:71928835-71928854 Msa0469910:intron 45.0%
ACATTTACTGACGTACCCCA+GGG - chr3_3:71928994-71929013 None:intergenic 45.0%
TACATTTACTGACGTACCCC+AGG - chr3_3:71928995-71929014 None:intergenic 45.0%
AGTATGTGTTGAGTGGTGCT+TGG + chr3_3:71929109-71929128 Msa0469910:intron 45.0%
GTATGTGTTGAGTGGTGCTT+GGG + chr3_3:71929110-71929129 Msa0469910:intron 45.0%
ACCTCCCTGTAAACCGAAAT+TGG + chr3_3:71929281-71929300 Msa0469910:intron 45.0%
! CGAAATTGGCTCAAACCACA+AGG + chr3_3:71929295-71929314 Msa0469910:intron 45.0%
ATATAGGACACCAACACCGA+TGG + chr3_3:71929475-71929494 Msa0469910:intron 45.0%
GACAGTTGTCTGACGAGTTT+CGG + chr3_3:71929753-71929772 Msa0469910:intron 45.0%
CGATATATCATGCACAGCTC+TGG - chr3_3:71929799-71929818 None:intergenic 45.0%
TTACTAGGAACTAGGAAGGG+TGG + chr3_3:71930080-71930099 Msa0469910:intron 45.0%
! CACTTGTTGACCACTAAGCA+AGG - chr3_3:71930141-71930160 None:intergenic 45.0%
! ACGGGCTAATACACATCGAT+TGG - chr3_3:71930239-71930258 None:intergenic 45.0%
GTGCCTATCTCTGTCCTAAA+TGG - chr3_3:71930379-71930398 None:intergenic 45.0%
GCTCTCCAAACGAATTGTAG+AGG + chr3_3:71930435-71930454 Msa0469910:intron 45.0%
CAAATGATATGGAGCCTTGC+AGG - chr3_3:71930724-71930743 None:intergenic 45.0%
GTGTTCATGTTGCTGCTGAT+AGG + chr3_3:71930745-71930764 Msa0469910:CDS 45.0%
TATGTAGATGGCCAGATGGA+TGG - chr3_3:71930858-71930877 None:intergenic 45.0%
TGTCTTTGTTGCTGTCAACC+TGG + chr3_3:71931329-71931348 Msa0469910:CDS 45.0%
GTCTTTGTTGCTGTCAACCT+GGG + chr3_3:71931330-71931349 Msa0469910:CDS 45.0%
ATAACGACGCTTCAAGCAGA+TGG - chr3_3:71931423-71931442 None:intergenic 45.0%
GTGTAGTGTACGCTAAAACC+TGG - chr3_3:71931487-71931506 None:intergenic 45.0%
GCCAGAACTATGATTGGAGA+TGG + chr3_3:71931701-71931720 Msa0469910:intron 45.0%
! CAGTGTATTGGTGGCAACTA+TGG + chr3_3:71932128-71932147 Msa0469910:CDS 45.0%
! TGTATTGGTGGCAACTATGG+TGG + chr3_3:71932131-71932150 Msa0469910:CDS 45.0%
! GTATTGGTGGCAACTATGGT+GGG + chr3_3:71932132-71932151 Msa0469910:CDS 45.0%
TCAGCTACTAGCGTAACTCT+AGG + chr3_3:71932513-71932532 Msa0469910:intron 45.0%
GGACGAAATGAGGTACGAAT+GGG - chr3_3:71932677-71932696 None:intergenic 45.0%
GAAATTTGGGGGACGAAATG+AGG - chr3_3:71932687-71932706 None:intergenic 45.0%
! CAAGGATCAACTTTGGGAGT+TGG - chr3_3:71932774-71932793 None:intergenic 45.0%
! CAACTCCCAAAGTTGATCCT+TGG + chr3_3:71932772-71932791 Msa0469910:intron 45.0%
TGCTCTTCCATTTCTTCCTG+TGG + chr3_3:71932836-71932855 Msa0469910:intron 45.0%
ATGTCGATGGAGAGATGACA+GGG + chr3_3:71933035-71933054 Msa0469910:CDS 45.0%
GTTGAACATGCTCAATTGGG+AGG - chr3_3:71933081-71933100 None:intergenic 45.0%
CTGGCAGCACCAATATATCA+AGG - chr3_3:71933411-71933430 None:intergenic 45.0%
!! CTTGATATATTGGTGCTGCC+AGG + chr3_3:71933409-71933428 Msa0469910:three_prime_UTR 45.0%
!! ATTAACTATATTATATATAA+TGG + chr3_3:71931456-71931475 Msa0469910:intron 5.0%
CCATTGAAATTGAGCGGAGG+AGG - chr3_3:71928354-71928373 None:intergenic 50.0%
CCTCCTCCGCTCAATTTCAA+TGG + chr3_3:71928351-71928370 Msa0469910:exon 50.0%
CTTCCGAACAAATCCAGTGC+CGG + chr3_3:71928458-71928477 Msa0469910:CDS 50.0%
TTTCGAGACAAATCCGGCAC+TGG - chr3_3:71928474-71928493 None:intergenic 50.0%
AGTGACGGTGAAGAAGGTTC+AGG + chr3_3:71928850-71928869 Msa0469910:intron 50.0%
GTGACGGTGAAGAAGGTTCA+GGG + chr3_3:71928851-71928870 Msa0469910:intron 50.0%
TGACGGTGAAGAAGGTTCAG+GGG + chr3_3:71928852-71928871 Msa0469910:intron 50.0%
AAGGAGGGACCAACGGTTAT+CGG + chr3_3:71928944-71928963 Msa0469910:intron 50.0%
AGTCCAGCAGTTCTTAACCC+TGG + chr3_3:71928974-71928993 Msa0469910:intron 50.0%
GTCCAGCAGTTCTTAACCCT+GGG + chr3_3:71928975-71928994 Msa0469910:intron 50.0%
TCCAGCAGTTCTTAACCCTG+GGG + chr3_3:71928976-71928995 Msa0469910:intron 50.0%
GCCAATTTCGGTTTACAGGG+AGG - chr3_3:71929285-71929304 None:intergenic 50.0%
TATGGTACTTTCGCCCCTTG+TGG - chr3_3:71929313-71929332 None:intergenic 50.0%
GTCTGACGAGTTTCGGACAT+CGG + chr3_3:71929760-71929779 Msa0469910:intron 50.0%
TCTGACGAGTTTCGGACATC+GGG + chr3_3:71929761-71929780 Msa0469910:intron 50.0%
GGATCATTGGCGATCTGTCA+AGG + chr3_3:71929919-71929938 Msa0469910:CDS 50.0%
TGACTGGAAGCCTTGCTTAG+TGG + chr3_3:71930128-71930147 Msa0469910:intron 50.0%
!! TTTCTGGCTGTCCAGCTTGT+AGG + chr3_3:71930822-71930841 Msa0469910:intron 50.0%
CTTGGGGCAAGATGGAGAAA+AGG - chr3_3:71931124-71931143 None:intergenic 50.0%
ACTCTGAACTTGGGGCAAGA+TGG - chr3_3:71931132-71931151 None:intergenic 50.0%
! TTTGCCTTGCTTGGCCTTTC+TGG + chr3_3:71931242-71931261 Msa0469910:CDS 50.0%
! TTGCCTTGCTTGGCCTTTCT+GGG + chr3_3:71931243-71931262 Msa0469910:CDS 50.0%
!! TGTGCTGACTGTCATTTGCC+AGG + chr3_3:71931940-71931959 Msa0469910:CDS 50.0%
! TGCCAGGCACTCTTTGTTTG+TGG + chr3_3:71931956-71931975 Msa0469910:CDS 50.0%
!! GTCCACAAACAAAGAGTGCC+TGG - chr3_3:71931961-71931980 None:intergenic 50.0%
!!! ACTGCATGTTTTGAGGGCTG+TGG + chr3_3:71931988-71932007 Msa0469910:CDS 50.0%
!! TTTTGAGGGCTGTGGAACCA+TGG + chr3_3:71931996-71932015 Msa0469910:CDS 50.0%
GGAACCATGGCAACAGAATG+TGG + chr3_3:71932009-71932028 Msa0469910:CDS 50.0%
ACCATGGCAACAGAATGTGG+TGG + chr3_3:71932012-71932031 Msa0469910:CDS 50.0%
ACCACCACATTCTGTTGCCA+TGG - chr3_3:71932016-71932035 None:intergenic 50.0%
GAATGTGGTGGTTGTTTGGG+AGG + chr3_3:71932024-71932043 Msa0469910:CDS 50.0%
!! TGGCAACTATGGTGGGTCAA+CGG + chr3_3:71932139-71932158 Msa0469910:CDS 50.0%
!! CTATGGTGGGTCAACGGATA+TGG + chr3_3:71932145-71932164 Msa0469910:CDS 50.0%
TAGGAGTCAGCAGAACACTC+AGG - chr3_3:71932637-71932656 None:intergenic 50.0%
!! GAATGGGCTGAGTGAGAGTT+TGG - chr3_3:71932661-71932680 None:intergenic 50.0%
GGGACGAAATGAGGTACGAA+TGG - chr3_3:71932678-71932697 None:intergenic 50.0%
ACACTCACGTACTCATGAGG+GGG - chr3_3:71932804-71932823 None:intergenic 50.0%
CACACTCACGTACTCATGAG+GGG - chr3_3:71932805-71932824 None:intergenic 50.0%
GCACACTCACGTACTCATGA+GGG - chr3_3:71932806-71932825 None:intergenic 50.0%
TGCACACTCACGTACTCATG+AGG - chr3_3:71932807-71932826 None:intergenic 50.0%
GATGTCGATGGAGAGATGAC+AGG + chr3_3:71933034-71933053 Msa0469910:CDS 50.0%
GAGAGATGACAGGGTCTGAT+TGG + chr3_3:71933044-71933063 Msa0469910:CDS 50.0%
GTAGGGCGAGTCTACTTCTA+CGG - chr3_3:71933168-71933187 None:intergenic 50.0%
CGGCCATTGAAATTGAGCGG+AGG - chr3_3:71928357-71928376 None:intergenic 55.0%
TCGATCGAGGAAGGATCGAC+GGG - chr3_3:71928424-71928443 None:intergenic 55.0%
GTCGATCGAGGAAGGATCGA+CGG - chr3_3:71928425-71928444 None:intergenic 55.0%
! CGGCACTGGATTTGTTCGGA+AGG - chr3_3:71928460-71928479 None:intergenic 55.0%
GGGTGAAGTGACGGTGAAGA+AGG + chr3_3:71928844-71928863 Msa0469910:intron 55.0%
GACGGTGAAGAAGGTTCAGG+GGG + chr3_3:71928853-71928872 Msa0469910:intron 55.0%
TAGTCGCAAGGAGGGACCAA+CGG + chr3_3:71928937-71928956 Msa0469910:intron 55.0%
ACCCCAGGGTTAAGAACTGC+TGG - chr3_3:71928980-71928999 None:intergenic 55.0%
TGCTCACTGCACTACCTGCA+AGG + chr3_3:71930707-71930726 Msa0469910:CDS 55.0%
!! GTGGTTGTTTGGGAGGTGCT+GGG + chr3_3:71932031-71932050 Msa0469910:CDS 55.0%
!! TGGTTGTTTGGGAGGTGCTG+GGG + chr3_3:71932032-71932051 Msa0469910:CDS 55.0%
GGCTGAGTGAGAGTTTGGCT+AGG - chr3_3:71932656-71932675 None:intergenic 55.0%
TCATGAGGGGGATGTCACCA+AGG - chr3_3:71932792-71932811 None:intergenic 55.0%
ACATGCTCAATTGGGAGGGC+TGG - chr3_3:71933076-71933095 None:intergenic 55.0%
AAGAGGTGGGACGAGAGGTG+AGG - chr3_3:71928398-71928417 None:intergenic 60.0%
GATCGACGGGAGGAAGAGGT+GGG - chr3_3:71928411-71928430 None:intergenic 60.0%
GAAGGATCGACGGGAGGAAG+AGG - chr3_3:71928415-71928434 None:intergenic 60.0%
ATCGAGGAAGGATCGACGGG+AGG - chr3_3:71928421-71928440 None:intergenic 60.0%
GCTTCGAGGTCGATCGAGGA+AGG - chr3_3:71928433-71928452 None:intergenic 60.0%
TCCTCGATCGACCTCGAAGC+TGG + chr3_3:71928433-71928452 Msa0469910:CDS 60.0%
ACCAGCTTCGAGGTCGATCG+AGG - chr3_3:71928437-71928456 None:intergenic 60.0%
GTTCGGAAGGACCAGCTTCG+AGG - chr3_3:71928447-71928466 None:intergenic 60.0%
GCACCCAGAAAGGCCAAGCA+AGG - chr3_3:71931249-71931268 None:intergenic 60.0%
! GGTGGTTGTTTGGGAGGTGC+TGG + chr3_3:71932030-71932049 Msa0469910:CDS 60.0%
TGCTCAATTGGGAGGGCTGG+AGG - chr3_3:71933073-71933092 None:intergenic 60.0%
GGAGGAAGAGGTGGGACGAG+AGG - chr3_3:71928403-71928422 None:intergenic 65.0%
GGATCGACGGGAGGAAGAGG+TGG - chr3_3:71928412-71928431 None:intergenic 65.0%
!! TTGGGAGGTGCTGGGGAAGC+AGG + chr3_3:71932039-71932058 Msa0469910:CDS 65.0%
!! TGGGAGGTGCTGGGGAAGCA+GGG + chr3_3:71932040-71932059 Msa0469910:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71928131 71933558 71928131 ID=Msa0469910;Name=Msa0469910
chr3_3 mRNA 71928131 71933558 71928131 ID=Msa0469910-mRNA-1;Parent=Msa0469910;Name=Msa0469910-mRNA-1;_AED=0.14;_eAED=0.14;_QI=239|1|1|1|1|1|7|432|325
chr3_3 exon 71928131 71928499 71928131 ID=Msa0469910-mRNA-1:exon:17727;Parent=Msa0469910-mRNA-1
chr3_3 exon 71929855 71929940 71929855 ID=Msa0469910-mRNA-1:exon:17728;Parent=Msa0469910-mRNA-1
chr3_3 exon 71930693 71930839 71930693 ID=Msa0469910-mRNA-1:exon:17729;Parent=Msa0469910-mRNA-1
chr3_3 exon 71930947 71931055 71930947 ID=Msa0469910-mRNA-1:exon:17730;Parent=Msa0469910-mRNA-1
chr3_3 exon 71931228 71931351 71931228 ID=Msa0469910-mRNA-1:exon:17731;Parent=Msa0469910-mRNA-1
chr3_3 exon 71931936 71932209 71931936 ID=Msa0469910-mRNA-1:exon:17732;Parent=Msa0469910-mRNA-1
chr3_3 exon 71933019 71933558 71933019 ID=Msa0469910-mRNA-1:exon:17733;Parent=Msa0469910-mRNA-1
chr3_3 five_prime_UTR 71928131 71928369 71928131 ID=Msa0469910-mRNA-1:five_prime_utr;Parent=Msa0469910-mRNA-1
chr3_3 CDS 71928370 71928499 71928370 ID=Msa0469910-mRNA-1:cds;Parent=Msa0469910-mRNA-1
chr3_3 CDS 71929855 71929940 71929855 ID=Msa0469910-mRNA-1:cds;Parent=Msa0469910-mRNA-1
chr3_3 CDS 71930693 71930839 71930693 ID=Msa0469910-mRNA-1:cds;Parent=Msa0469910-mRNA-1
chr3_3 CDS 71930947 71931055 71930947 ID=Msa0469910-mRNA-1:cds;Parent=Msa0469910-mRNA-1
chr3_3 CDS 71931228 71931351 71931228 ID=Msa0469910-mRNA-1:cds;Parent=Msa0469910-mRNA-1
chr3_3 CDS 71931936 71932209 71931936 ID=Msa0469910-mRNA-1:cds;Parent=Msa0469910-mRNA-1
chr3_3 CDS 71933019 71933126 71933019 ID=Msa0469910-mRNA-1:cds;Parent=Msa0469910-mRNA-1
chr3_3 three_prime_UTR 71933127 71933558 71933127 ID=Msa0469910-mRNA-1:three_prime_utr;Parent=Msa0469910-mRNA-1
Gene Sequence

>Msa0469910

ATGGCCGATCACTCAGAATCAGACACCTCACCTCTCGTCCCACCTCTTCCTCCCGTCGATCCTTCCTCGATCGACCTCGAAGCTGGTCCTTCCGAACAAATCCAGTGCCGGATTTGTCTCGAAACTGATGGTAGGGATTTCATAGCTCCTTGTAAGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGATCATTGGCGATCTGTCAAGGAAGGATTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGAGAACCTTGAAATTTCGTTTTTTCGTCACCAGAGATATTTTGTCTATTTTTCTGGCTGTCCAGCTTATTATTACCTCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAAAATTGGCTTCGTATTCTCTGGGGTTTTGATAGTGCACTGAGCTTCTATTATATATGCGGAGCCCTATTATTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAACCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGACTGTCATTTGCCAGGCACTCTTTGTTTGTGGACTGATTGCACTGCATGTTTTGAGGGCTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTACTATTCATAATGGCTTTGATTGTTCTTGGACTTTTTACAGTAATTGGGATATTTTACAGTGTATTGGTGGCAACTATGGTGGGTCAACGGATATGGCAACGTCACTATCACATACTTGCTAAAAGGATGTTAACAAAGGAGTATGTTGTTGAAGATGTCGATGGAGAGATGACAGGGTCTGATTGGTCTCCTCCAGCCCTCCCAATTGAGCATGTTCAACAATTGAAAACATTGGGCCTCTTATGA

Protein sequence

>Msa0469910

MADHSESDTSPLVPPLPPVDPSSIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRSVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILSIFLAVQLIITSLAYLVYLIDGYQQNWLRILWGFDSALSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCLWTDCTACFEGCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPALPIEHVQQLKTLGLL*