AlfalfaGEDB | Msa1195070

M. sativa cultivar zhongmu-4 / Msa1195070

KEGG: -
GO: -
PFAM: PF01582.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195070	XP_003628577.1	89.831	413	38	2	11	421	12	422	0.0	755

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195070	sp\|V9M398\|RUN1_VITRO	40.291	412	223	9	14	415	25	423	2.27e-88	295

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195070	G7LDU5	89.831	413	38	2	11	421	12	422	0.0	755

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007080	Msa1195070	0.817276	3.586724e-52	-8.615850e-47
Msa0088550	Msa1195070	0.809960	1.461404e-50	-8.615850e-47
Msa0135360	Msa1195070	0.810176	1.313104e-50	-8.615850e-47
Msa0419990	Msa1195070	0.817030	4.074280e-52	-8.615850e-47
Msa0465930	Msa1195070	0.806530	7.867861e-50	-8.615850e-47
Msa0465970	Msa1195070	0.805458	1.321787e-49	-8.615850e-47
Msa0773610	Msa1195070	0.814700	1.347979e-51	-8.615850e-47
Msa1194930	Msa1195070	0.804808	1.808193e-49	-8.615850e-47
Msa1194940	Msa1195070	0.800998	1.107802e-48	-8.615850e-47
Msa1195070	Msa1248550	0.838810	2.304685e-57	-8.615850e-47

Showing 1 to 10 of 14 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195070	MtrunA17_Chr8g0363851	90.756	238	22	0	184	421	1	238	6.84e-144	440
Msa1195070	MtrunA17_Chr6g0454931	41.705	434	215	8	17	418	51	478	3.58e-104	327
Msa1195070	MtrunA17_Chr4g0005851	43.510	416	220	7	11	418	32	440	1.82e-102	328
Msa1195070	MtrunA17_Chr6g0455211	41.371	423	220	7	17	418	40	455	5.38e-101	323
Msa1195070	MtrunA17_Chr4g0009401	42.298	409	221	6	16	418	505	904	1.09e-100	328
Msa1195070	MtrunA17_Chr4g0009401	31.678	423	244	15	16	416	5	404	6.28e-43	161
Msa1195070	MtrunA17_Chr4g0009141	41.220	410	227	6	16	418	526	928	1.48e-100	328
Msa1195070	MtrunA17_Chr4g0009141	30.822	438	273	14	1	417	1	429	1.81e-50	183
Msa1195070	MtrunA17_Chr4g0009241	41.951	410	224	6	16	418	548	950	3.15e-100	327
Msa1195070	MtrunA17_Chr4g0009241	29.318	440	265	13	13	416	16	445	1.03e-47	175

Showing 1 to 10 of 393 entries

Previous1 2 3 4 5…40Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1195070	AT1G27170.1	47.596	416	203	6	13	421	11	418	4.62e-123	388
Msa1195070	AT1G27170.2	46.265	415	208	7	13	421	13	418	1.48e-122	387
Msa1195070	AT1G27180.5	44.286	420	215	9	13	417	9	424	2.75e-105	340
Msa1195070	AT1G27180.8	44.286	420	215	9	13	417	9	424	2.75e-105	340
Msa1195070	AT1G27180.1	44.286	420	215	9	13	417	173	588	1.16e-104	340
Msa1195070	AT1G27180.1	45.890	146	71	3	13	153	14	156	3.45e-37	145
Msa1195070	AT1G27180.3	42.619	420	219	10	13	417	14	426	1.14e-102	329
Msa1195070	AT1G27180.2	42.619	420	219	10	13	417	14	426	2.77e-101	329
Msa1195070	AT5G36930.3	36.983	411	243	5	13	418	11	410	2.55e-75	254
Msa1195070	AT5G36930.2	36.983	411	243	5	13	418	14	413	3.44e-75	254

Showing 1 to 10 of 393 entries

Previous1 2 3 4 5…40Next

Find 290 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAATGGTTTCATGA+AGG	0.605469	8_1:+42860152	Msa1195070:CDS
AAACAGCTTCCAGCTTCTAT+AGG	0.343002	8_1:+42863669	Msa1195070:three_prime_UTR
AAACCTTGACATTGTTGGAT+TGG	0.430833	8_1:-42859821	None:intergenic
AAACTCATCTTCACTCTCAG+TGG	0.652894	8_1:-42865080	None:intergenic
AAAGAACTCCCTTCCACCAT+TGG	0.466866	8_1:+42863318	Msa1195070:three_prime_UTR
AAAGATCTTGCTTCTCAAGA+AGG	0.453048	8_1:+42860002	Msa1195070:CDS
AAAGATGGAGGAAACAGCTA+TGG	0.580150	8_1:+42863716	Msa1195070:three_prime_UTR
AAAGCAAATTGTGTCTCTTA+CGG	0.383557	8_1:+42860337	Msa1195070:CDS
AAAGCATTACCAGAAAACAT+AGG	0.604438	8_1:+42862967	Msa1195070:three_prime_UTR
AAATCGAGTTCTGCTAGTGT+TGG	0.587797	8_1:+42860088	Msa1195070:CDS

Showing 1 to 10 of 290 entries

Previous1 2 3 4 5…29Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTAGGTGAAATGATAACAA+TGG	-	chr8_1:42858974-42858993	None:intergenic	30.0%
ATAGGATTTGTGATCTTCAA+AGG	+	chr8_1:42859028-42859047	Msa1195070:CDS	30.0%
ATCTCATGTCAGAAAACAAA+AGG	+	chr8_1:42859083-42859102	Msa1195070:CDS	30.0%
TCTCATGTCAGAAAACAAAA+GGG	+	chr8_1:42859084-42859103	Msa1195070:CDS	30.0%
AGACGTTCTATGCTTAAAAT+AGG	+	chr8_1:42859171-42859190	Msa1195070:CDS	30.0%
CAATTTGCATCTAAAGAAGA+TGG	+	chr8_1:42859951-42859970	Msa1195070:CDS	30.0%
TTCACAAACTATTCTTCTGA+TGG	-	chr8_1:42860069-42860088	None:intergenic	30.0%
TTGATGCTTTGATTGGTAAA+AGG	+	chr8_1:42860135-42860154	Msa1195070:CDS	30.0%
TGATGCTTTGATTGGTAAAA+GGG	+	chr8_1:42860136-42860155	Msa1195070:CDS	30.0%
AAAGCAAATTGTGTCTCTTA+CGG	+	chr8_1:42860337-42860356	Msa1195070:CDS	30.0%

Showing 1 to 10 of 440 entries

Previous1 2 3 4 5…44Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	42858742	42865483	42858742	ID=Msa1195070;Name=Msa1195070
chr8_1	mRNA	42858742	42865483	42858742	ID=Msa1195070-mRNA-1;Parent=Msa1195070;Name=Msa1195070-mRNA-1;_AED=0.03;_eAED=0.03;_QI=12\|1\|1\|1\|0.8\|0.5\|6\|3142\|426
chr8_1	exon	42858742	42859229	42858742	ID=Msa1195070-mRNA-1:exon:13778;Parent=Msa1195070-mRNA-1
chr8_1	exon	42859680	42860801	42859680	ID=Msa1195070-mRNA-1:exon:13779;Parent=Msa1195070-mRNA-1
chr8_1	exon	42861669	42861722	42861669	ID=Msa1195070-mRNA-1:exon:13780;Parent=Msa1195070-mRNA-1
chr8_1	exon	42861745	42861998	42861745	ID=Msa1195070-mRNA-1:exon:13781;Parent=Msa1195070-mRNA-1
chr8_1	exon	42862706	42864283	42862706	ID=Msa1195070-mRNA-1:exon:13782;Parent=Msa1195070-mRNA-1
chr8_1	exon	42864545	42865483	42864545	ID=Msa1195070-mRNA-1:exon:13783;Parent=Msa1195070-mRNA-1
chr8_1	five_prime_UTR	42858742	42858753	42858742	ID=Msa1195070-mRNA-1:five_prime_utr;Parent=Msa1195070-mRNA-1
chr8_1	CDS	42858754	42859229	42858754	ID=Msa1195070-mRNA-1:cds;Parent=Msa1195070-mRNA-1
chr8_1	CDS	42859680	42860484	42859680	ID=Msa1195070-mRNA-1:cds;Parent=Msa1195070-mRNA-1
chr8_1	three_prime_UTR	42860485	42860801	42860485	ID=Msa1195070-mRNA-1:three_prime_utr;Parent=Msa1195070-mRNA-1
chr8_1	three_prime_UTR	42861669	42861722	42861669	ID=Msa1195070-mRNA-1:three_prime_utr;Parent=Msa1195070-mRNA-1
chr8_1	three_prime_UTR	42861745	42861998	42861745	ID=Msa1195070-mRNA-1:three_prime_utr;Parent=Msa1195070-mRNA-1
chr8_1	three_prime_UTR	42862706	42864283	42862706	ID=Msa1195070-mRNA-1:three_prime_utr;Parent=Msa1195070-mRNA-1
chr8_1	three_prime_UTR	42864545	42865483	42864545	ID=Msa1195070-mRNA-1:three_prime_utr;Parent=Msa1195070-mRNA-1

Gene Sequence

>Msa1195070

ATGATGTCATCATCTTCTTCAGGCGGAGGAGCATTCAGGTTACGTTGGGATGTGTTTTTGAGTTTCCGAGGAGAAGACACTCGCGAATGTTTCACCAAAAAACTGTATGAATCACTGCACAAACAAGGTGTTCGGTCTTTCATGGATGATGAGGGTTTGGATCGTGGGGACCACATAGCTACCACTCTTCTTGAAGCCATTGATGACTCTGCTGCTTCCATTGTTATCATTTCACCTAACTATGCTGATTCTCATTGGTGTCTTGATGAACTCAATAGGATTTGTGATCTTCAAAGGCTTATTATTCCTGTTTTCTATAAGGTTGATCCATCTCATGTCAGAAAACAAAAGGGTCCTTTTAAAAAAGGGTTTAAGGATCTTCAAAACAGGTTTGGGGAAGATAAACTTTCGAAGTGGAGACGTTCTATGCTTAAAATAGGTGGTCTTGCTGGCTTGGTTTTCAATCCTATTTCTAGTGATGATGGCGAGCATGAGAATCTGATACGTCGTTTGGTGAAAAGGGTTTTGAAGGAGTTGAGTAATACTCCAATGGTTGTGTCTGAGTTTGCTGTGGGGATCAATGAACGTGTTGAGAAGGTGATGGATTTGTTACAACTCCAATCCAACAATGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGTGTTGGCAAGACAACCCTTGCTAAGGCTCTCTTCAATAGTCTTGTTGGTCGTTTCGAGCGCAGATGCTTCATATCAAATGTGAGACAATTTGCATCTAAAGAAGATGGTTTGCTTTCTATTCAAAGCAATATAATTAAAGATCTTGCTTCTCAAGAAGGAGCGCAAAGTTTTATCAGTGATGTCAGTGCTGGTATTTCTTCCATCAGAAGAATAGTTTGTGAAAATCGAGTTCTGCTAGTGTTGGATGATGTTGATCATGTAAATCAGCTTGATGCTTTGATTGGTAAAAGGGAATGGTTTCATGAAGGAAGCTGTATAATAATTACAACAAGAGATACAACTGTTTTGCCTGAAAAACATGTCAATAAGCTGTTTGAAGTTACAGAATTGAATCCTGAAGAAGCCCGAGAGTTATTCAGTTACCATGCATTGAGGAAAAAGGATCCTCCACCAGACTTTCTGAGTTGTTCAAAGCAAATTGTGTCTCTTACGGGAAGAATGCCATTGGCTTTGGAAGTGTTTGGTTGCTTTCTGTTTGGGAAGAGAAGGGTGGAAGAATGGGAGGATGTAGTTGAGAAGCTGAAAACAATTCGCCCGGGAATCTTCATGATGTGTTGA

Protein sequence

>Msa1195070

MMSSSSSGGGAFRLRWDVFLSFRGEDTRECFTKKLYESLHKQGVRSFMDDEGLDRGDHIATTLLEAIDDSAASIVIISPNYADSHWCLDELNRICDLQRLIIPVFYKVDPSHVRKQKGPFKKGFKDLQNRFGEDKLSKWRRSMLKIGGLAGLVFNPISSDDGEHENLIRRLVKRVLKELSNTPMVVSEFAVGINERVEKVMDLLQLQSNNVKVLGLYGMGGVGKTTLAKALFNSLVGRFERRCFISNVRQFASKEDGLLSIQSNIIKDLASQEGAQSFISDVSAGISSIRRIVCENRVLLVLDDVDHVNQLDALIGKREWFHEGSCIIITTRDTTVLPEKHVNKLFEVTELNPEEARELFSYHALRKKDPPPDFLSCSKQIVSLTGRMPLALEVFGCFLFGKRRVEEWEDVVEKLKTIRPGIFMMC*