Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1195340 | XP_003627159.1 | 96.687 | 483 | 3 | 2 | 1 | 479 | 1 | 474 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1195340 | sp|Q9CAI5|CKL2_ARATH | 73.904 | 479 | 104 | 8 | 1 | 472 | 1 | 465 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0506530 | Msa1195340 | 0.808670 | 2.763779e-50 | -8.615850e-47 |
| Msa0531970 | Msa1195340 | 0.800411 | 1.459342e-48 | -8.615850e-47 |
| Msa0968320 | Msa1195340 | 0.812738 | 3.645754e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1195340 | MtrunA17_Chr8g0342821 | 96.687 | 483 | 3 | 2 | 1 | 479 | 1 | 474 | 0.0 | 948 |
| Msa1195340 | MtrunA17_Chr2g0329981 | 80.864 | 486 | 75 | 7 | 1 | 479 | 1 | 475 | 0.0 | 785 |
| Msa1195340 | MtrunA17_Chr4g0071031 | 72.895 | 487 | 91 | 9 | 1 | 479 | 1 | 454 | 0.0 | 666 |
| Msa1195340 | MtrunA17_Chr2g0299661 | 66.806 | 479 | 141 | 6 | 1 | 474 | 1 | 466 | 0.0 | 633 |
| Msa1195340 | MtrunA17_Chr1g0183631 | 57.851 | 484 | 156 | 10 | 1 | 470 | 1 | 450 | 0.0 | 521 |
| Msa1195340 | MtrunA17_Chr7g0261501 | 74.251 | 334 | 64 | 5 | 1 | 323 | 1 | 323 | 0.0 | 517 |
| Msa1195340 | MtrunA17_Chr1g0166821 | 75.767 | 326 | 63 | 4 | 1 | 319 | 2 | 318 | 0.0 | 517 |
| Msa1195340 | MtrunA17_Chr1g0187571 | 76.144 | 306 | 59 | 3 | 1 | 301 | 2 | 298 | 1.01e-173 | 496 |
| Msa1195340 | MtrunA17_Chr6g0486611 | 74.351 | 308 | 65 | 3 | 1 | 303 | 1 | 299 | 9.79e-170 | 484 |
| Msa1195340 | MtrunA17_Chr8g0390211 | 73.052 | 308 | 69 | 3 | 1 | 303 | 1 | 299 | 9.85e-166 | 474 |
| Msa1195340 | MtrunA17_Chr3g0140071 | 62.757 | 341 | 107 | 5 | 1 | 331 | 1 | 331 | 1.18e-152 | 441 |
| Msa1195340 | MtrunA17_Chr1g0167261 | 67.638 | 309 | 84 | 4 | 1 | 302 | 2 | 301 | 2.01e-152 | 437 |
| Msa1195340 | MtrunA17_Chr1g0146151 | 63.110 | 328 | 107 | 3 | 1 | 323 | 1 | 319 | 4.52e-151 | 437 |
| Msa1195340 | MtrunA17_Chr7g0214531 | 36.458 | 288 | 152 | 8 | 9 | 277 | 37 | 312 | 4.09e-52 | 186 |
| Msa1195340 | MtrunA17_Chr1g0213321 | 37.456 | 283 | 151 | 9 | 9 | 277 | 119 | 389 | 8.55e-51 | 183 |
| Msa1195340 | MtrunA17_Chr1g0146301 | 36.594 | 276 | 150 | 8 | 9 | 271 | 124 | 387 | 1.91e-50 | 182 |
| Msa1195340 | MtrunA17_Chr3g0140431 | 36.594 | 276 | 150 | 8 | 9 | 271 | 38 | 301 | 1.92e-50 | 181 |
| Msa1195340 | MtrunA17_Chr7g0253211 | 38.047 | 297 | 152 | 10 | 4 | 280 | 317 | 601 | 3.28e-50 | 183 |
| Msa1195340 | MtrunA17_Chr8g0340491 | 35.439 | 285 | 148 | 11 | 9 | 271 | 128 | 398 | 2.12e-44 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1195340 | AT1G72710.1 | 73.904 | 479 | 104 | 8 | 1 | 472 | 1 | 465 | 0.0 | 685 |
| Msa1195340 | AT4G26100.1 | 67.635 | 482 | 113 | 11 | 1 | 475 | 1 | 446 | 0.0 | 628 |
| Msa1195340 | AT5G57015.1 | 67.423 | 485 | 101 | 11 | 1 | 479 | 1 | 434 | 0.0 | 620 |
| Msa1195340 | AT2G19470.1 | 67.067 | 416 | 102 | 7 | 1 | 409 | 1 | 388 | 0.0 | 549 |
| Msa1195340 | AT1G03930.1 | 59.213 | 483 | 172 | 8 | 1 | 472 | 1 | 469 | 0.0 | 521 |
| Msa1195340 | AT5G44100.1 | 79.085 | 306 | 50 | 3 | 1 | 301 | 1 | 297 | 0.0 | 517 |
| Msa1195340 | AT5G44100.2 | 79.085 | 306 | 50 | 3 | 1 | 301 | 1 | 297 | 0.0 | 517 |
| Msa1195340 | AT3G23340.1 | 62.028 | 424 | 134 | 8 | 1 | 419 | 1 | 402 | 9.12e-179 | 508 |
| Msa1195340 | AT4G28540.1 | 70.448 | 335 | 78 | 4 | 1 | 323 | 5 | 330 | 6.96e-174 | 497 |
| Msa1195340 | AT4G14340.1 | 60.952 | 420 | 137 | 7 | 1 | 415 | 7 | 404 | 1.27e-173 | 496 |
| Msa1195340 | AT5G43320.1 | 54.656 | 494 | 186 | 11 | 1 | 474 | 1 | 476 | 4.96e-173 | 495 |
| Msa1195340 | AT4G14340.2 | 75.163 | 306 | 62 | 3 | 1 | 301 | 7 | 303 | 6.35e-172 | 488 |
| Msa1195340 | AT1G04440.1 | 66.667 | 345 | 101 | 3 | 1 | 340 | 1 | 336 | 1.36e-169 | 486 |
| Msa1195340 | AT5G43320.2 | 73.203 | 306 | 68 | 3 | 1 | 301 | 1 | 297 | 6.60e-168 | 478 |
| Msa1195340 | AT5G43320.3 | 73.203 | 306 | 68 | 3 | 1 | 301 | 1 | 297 | 6.60e-168 | 478 |
| Msa1195340 | AT4G28880.3 | 63.736 | 364 | 110 | 5 | 1 | 359 | 1 | 347 | 6.94e-167 | 477 |
| Msa1195340 | AT4G28880.2 | 63.736 | 364 | 110 | 5 | 1 | 359 | 1 | 347 | 6.94e-167 | 477 |
| Msa1195340 | AT4G28880.1 | 63.736 | 364 | 110 | 5 | 1 | 359 | 1 | 347 | 6.94e-167 | 477 |
| Msa1195340 | AT4G28880.4 | 63.736 | 364 | 110 | 5 | 1 | 359 | 1 | 347 | 6.94e-167 | 477 |
| Msa1195340 | AT3G23340.2 | 61.139 | 404 | 130 | 8 | 21 | 419 | 7 | 388 | 5.19e-166 | 475 |
| Msa1195340 | AT4G28860.2 | 66.071 | 336 | 99 | 4 | 1 | 331 | 1 | 326 | 1.91e-163 | 467 |
| Msa1195340 | AT4G28860.1 | 56.338 | 426 | 142 | 8 | 1 | 410 | 1 | 398 | 8.20e-163 | 467 |
| Msa1195340 | AT4G08800.1 | 65.287 | 314 | 63 | 5 | 1 | 309 | 1 | 273 | 2.59e-144 | 415 |
| Msa1195340 | AT2G25760.2 | 36.897 | 290 | 152 | 8 | 4 | 271 | 100 | 380 | 1.50e-54 | 194 |
| Msa1195340 | AT2G25760.1 | 36.207 | 290 | 151 | 9 | 4 | 271 | 100 | 377 | 1.47e-51 | 186 |
| Msa1195340 | AT5G18190.2 | 37.248 | 298 | 155 | 10 | 4 | 281 | 123 | 408 | 2.76e-50 | 182 |
| Msa1195340 | AT5G18190.1 | 37.248 | 298 | 155 | 10 | 4 | 281 | 123 | 408 | 2.76e-50 | 182 |
| Msa1195340 | AT3G03940.1 | 37.584 | 298 | 154 | 10 | 4 | 281 | 133 | 418 | 3.91e-50 | 182 |
| Msa1195340 | AT3G13670.1 | 34.932 | 292 | 159 | 8 | 9 | 281 | 137 | 416 | 4.08e-49 | 179 |
Find 149 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATCAAACATAAATAATT+TGG | 0.143188 | 8_1:+43207186 | Msa1195340:CDS |
| TTTCTTTATTGTATACTTAT+AGG | 0.154065 | 8_1:-43207405 | None:intergenic |
| GAAGAAGAAAAGGGTATATC+TGG | 0.226962 | 8_1:-43202472 | None:intergenic |
| GACAATTTCCTCATGGGTTT+AGG | 0.228856 | 8_1:+43203892 | Msa1195340:CDS |
| TAACACATGCATACAATTAA+TGG | 0.233781 | 8_1:-43207902 | None:intergenic |
| ATTTATTCAATTTCTGTAAT+AGG | 0.238085 | 8_1:+43203689 | Msa1195340:CDS |
| TTCTTCATTTGTCTGAATAT+TGG | 0.261094 | 8_1:-43202722 | None:intergenic |
| GGAAAAGATGGTAGGAATAT+TGG | 0.271839 | 8_1:+43206259 | Msa1195340:CDS |
| CATATCATTGTGAACTATAT+AGG | 0.295649 | 8_1:+43207569 | Msa1195340:three_prime_UTR |
| AAAATTGGTAGCGGATCTTT+TGG | 0.312915 | 8_1:+43202596 | Msa1195340:CDS |
| CACATGTAAAGCTTGATCTT+TGG | 0.322278 | 8_1:-43207729 | None:intergenic |
| TATCTGGGAAATGCTGAAAA+AGG | 0.327889 | 8_1:-43202456 | None:intergenic |
| ATATCATTGTGAACTATATA+GGG | 0.329871 | 8_1:+43207570 | Msa1195340:three_prime_UTR |
| CTTGCTGCTGGACCGAGTTC+TGG | 0.338183 | 8_1:+43206012 | Msa1195340:CDS |
| ACAATTTCCTCATGGGTTTA+GGG | 0.340991 | 8_1:+43203893 | Msa1195340:CDS |
| GAAAAGATGGTAGGAATATT+GGG | 0.370564 | 8_1:+43206260 | Msa1195340:CDS |
| ATGAATACTCATCTTGGAAT+TGG | 0.372690 | 8_1:+43205085 | Msa1195340:CDS |
| ACAATAAAGAAAATATGTTT+TGG | 0.374535 | 8_1:+43207416 | Msa1195340:three_prime_UTR |
| ATTACAAGCTTATGCAATAC+AGG | 0.376870 | 8_1:-43203763 | None:intergenic |
| ATTAAACCCTAATTGAAAAT+CGG | 0.386169 | 8_1:-43202536 | None:intergenic |
| ACCTCAGTGACCGACAATAA+TGG | 0.388781 | 8_1:-43205562 | None:intergenic |
| TTTCTGCAGTCTACCTTGGC+AGG | 0.394985 | 8_1:+43205330 | Msa1195340:intron |
| TATCGAGTTCGAATTTCTTT+CGG | 0.396736 | 8_1:+43206975 | Msa1195340:CDS |
| CACTTACAGGGTCTTGCTGC+TGG | 0.397023 | 8_1:+43206000 | Msa1195340:intron |
| CTTCATACTTCCATTATTGT+CGG | 0.399001 | 8_1:+43205552 | Msa1195340:CDS |
| AATCGAAGACATAATCAAAC+TGG | 0.405895 | 8_1:-43205835 | None:intergenic |
| CCAAACCTTCACGGATGAAT+AGG | 0.413827 | 8_1:-43205631 | None:intergenic |
| GGTTTAATGGAACCTCGAAT+TGG | 0.417126 | 8_1:+43202551 | Msa1195340:exon |
| ATGCCATAAAAGTACCTATA+GGG | 0.418213 | 8_1:-43204089 | None:intergenic |
| TCAGAATTTACAAGGAAGAA+AGG | 0.421192 | 8_1:-43207288 | None:intergenic |
| AATTTGGATTCAACGCTTAG+AGG | 0.429713 | 8_1:+43207202 | Msa1195340:CDS |
| GCTAGTATGAATACTCATCT+TGG | 0.435171 | 8_1:+43205079 | Msa1195340:CDS |
| AAGATTCCATCATTAGCAAT+AGG | 0.437123 | 8_1:-43206322 | None:intergenic |
| CAACAAATTACAAACACAAC+GGG | 0.440893 | 8_1:-43207820 | None:intergenic |
| TTGGAAATAAGTTCCGTCTT+GGG | 0.443286 | 8_1:+43202570 | Msa1195340:CDS |
| CGTCATCGTAGAAGAAGAAA+AGG | 0.445616 | 8_1:-43202482 | None:intergenic |
| GACAAAATATCTTGTGTAAG+TGG | 0.446487 | 8_1:+43207877 | Msa1195340:three_prime_UTR |
| ACACCGGACCATTTCACATT+CGG | 0.447768 | 8_1:-43203613 | None:intergenic |
| CACCATAGCATCTTTAGATC+CGG | 0.452993 | 8_1:-43206380 | None:intergenic |
| ATACAACAATTGAGGGTGCT+TGG | 0.454552 | 8_1:-43203437 | None:intergenic |
| AGTTTGATTATGTCTTCGAT+TGG | 0.461696 | 8_1:+43205837 | Msa1195340:CDS |
| TTTGCTTCATACAACAATTG+AGG | 0.464158 | 8_1:-43203445 | None:intergenic |
| TCTGGACCTATTGCTAATGA+TGG | 0.466720 | 8_1:+43206316 | Msa1195340:CDS |
| TTGCTTCATACAACAATTGA+GGG | 0.471529 | 8_1:-43203444 | None:intergenic |
| ATCCTTGTGATGGATTTACT+TGG | 0.473724 | 8_1:+43203652 | Msa1195340:CDS |
| CCACTTACAAATGACTTAAC+CGG | 0.474625 | 8_1:+43206361 | Msa1195340:CDS |
| GAAAGTTTCTACATCTATTG+AGG | 0.478508 | 8_1:+43205402 | Msa1195340:CDS |
| CTGGAATACCGAATGTGAAA+TGG | 0.479886 | 8_1:+43203605 | Msa1195340:CDS |
| GCAAATGCTGATGGACAGTC+AGG | 0.482487 | 8_1:+43206051 | Msa1195340:CDS |
| GTGTTTGTAATTTGTTGTAA+TGG | 0.486115 | 8_1:+43207826 | Msa1195340:three_prime_UTR |
| CCCACTCGAAGGAGAACCTC+TGG | 0.486536 | 8_1:+43206298 | Msa1195340:CDS |
| CCGGTTAAGTCATTTGTAAG+TGG | 0.488016 | 8_1:-43206361 | None:intergenic |
| ATTGGAAATAAGTTCCGTCT+TGG | 0.488327 | 8_1:+43202569 | Msa1195340:CDS |
| GAGCACAACCGAGTATCATC+TGG | 0.489104 | 8_1:+43207157 | Msa1195340:CDS |
| CGGTTAAGTCATTTGTAAGT+GGG | 0.492030 | 8_1:-43206360 | None:intergenic |
| TCTTATGCTTGCCGATCAAA+TGG | 0.495084 | 8_1:+43203732 | Msa1195340:CDS |
| CTAGCTTCTGCAAATGCTGA+TGG | 0.497772 | 8_1:+43206042 | Msa1195340:CDS |
| AGGGATGATTTAGAGTCGCT+TGG | 0.498396 | 8_1:+43205205 | Msa1195340:CDS |
| GGTATTTCTGCAGTCTACCT+TGG | 0.499822 | 8_1:+43205326 | Msa1195340:intron |
| TCGAATTTCTTTCGGTCAAG+TGG | 0.500221 | 8_1:+43206983 | Msa1195340:CDS |
| CACATCAGCATATTCCCTAT+AGG | 0.500725 | 8_1:+43204075 | Msa1195340:CDS |
| TTTACTTGGCCCTAGTCTTG+AGG | 0.502228 | 8_1:+43203666 | Msa1195340:CDS |
| CGGAACTTATTTCCAATTCG+AGG | 0.504125 | 8_1:-43202563 | None:intergenic |
| AGCAGCCGCAATGCAGCTGT+TGG | 0.511872 | 8_1:+43207031 | Msa1195340:CDS |
| TGTTTCTTCCAGATGATACT+CGG | 0.516048 | 8_1:-43207165 | None:intergenic |
| AAGCCAGACAATTTCCTCAT+GGG | 0.517628 | 8_1:+43203886 | Msa1195340:CDS |
| CTCACGCTGGATTCAAGTCT+AGG | 0.518828 | 8_1:+43207082 | Msa1195340:CDS |
| TAGGTGTACATCATTGACTT+TGG | 0.518918 | 8_1:+43204026 | Msa1195340:intron |
| TTGAATAAATCCTCAAGACT+AGG | 0.522442 | 8_1:-43203676 | None:intergenic |
| TCAAGCTTTACATGTGAGAC+TGG | 0.523238 | 8_1:+43207736 | Msa1195340:three_prime_UTR |
| CTCCTCTCGTCCTCTCACGC+TGG | 0.525433 | 8_1:+43207069 | Msa1195340:CDS |
| AAGAAGAAAAGGGTATATCT+GGG | 0.527099 | 8_1:-43202471 | None:intergenic |
| TATGCTTGCCGATCAAATGG+TGG | 0.528271 | 8_1:+43203735 | Msa1195340:CDS |
| AAGAAAACAAATGATAGTAA+AGG | 0.529240 | 8_1:-43207515 | None:intergenic |
| TCTTCCTTGTAAATTCTGAA+AGG | 0.531260 | 8_1:+43207292 | Msa1195340:three_prime_UTR |
| GGAGCAGTCCGTAAAAGCTC+TGG | 0.531646 | 8_1:+43207103 | Msa1195340:CDS |
| AAACCCATGAGGAAATTGTC+TGG | 0.531680 | 8_1:-43203889 | None:intergenic |
| TGCAGCTGTTGGCAGTGAGA+CGG | 0.537993 | 8_1:+43207042 | Msa1195340:CDS |
| AACCGGATCTAAAGATGCTA+TGG | 0.540198 | 8_1:+43206378 | Msa1195340:CDS |
| GCGTTTCTCTACTGTAATTG+TGG | 0.540949 | 8_1:+43207689 | Msa1195340:three_prime_UTR |
| TAAACCTTTCAGAATTTACA+AGG | 0.541737 | 8_1:-43207296 | None:intergenic |
| AAAGCCAGACAATTTCCTCA+TGG | 0.544831 | 8_1:+43203885 | Msa1195340:CDS |
| TGAATAAATCCTCAAGACTA+GGG | 0.545896 | 8_1:-43203675 | None:intergenic |
| TTCTGCAGTCTACCTTGGCA+GGG | 0.547539 | 8_1:+43205331 | Msa1195340:intron |
| AAACAAGGCCCAAACCTTCA+CGG | 0.553845 | 8_1:-43205640 | None:intergenic |
| CAGCGTGAGAGGACGAGAGG+AGG | 0.553851 | 8_1:-43207068 | None:intergenic |
| CGTGACCTATTCATCCGTGA+AGG | 0.553976 | 8_1:+43205626 | Msa1195340:CDS |
| CAGAGAGAATAAGAATCTGA+CGG | 0.555069 | 8_1:+43205042 | Msa1195340:intron |
| AGCGTGAGAGGACGAGAGGA+GGG | 0.556937 | 8_1:-43207067 | None:intergenic |
| GAAGTATGAAGCAAATTCTG+AGG | 0.560679 | 8_1:-43205540 | None:intergenic |
| ATGCTTGCCGATCAAATGGT+GGG | 0.562088 | 8_1:+43203736 | Msa1195340:CDS |
| TGTGTAGGTGGTGGAAAAGA+TGG | 0.562910 | 8_1:+43206247 | Msa1195340:intron |
| GTGAAATGGTCCGGTGTGGA+AGG | 0.568781 | 8_1:+43203619 | Msa1195340:CDS |
| AGACTTGAATCCAGCGTGAG+AGG | 0.575553 | 8_1:-43207079 | None:intergenic |
| CTTTACATGTGAGACTGGAA+TGG | 0.575917 | 8_1:+43207741 | Msa1195340:three_prime_UTR |
| TCCAGAGGTTCTCCTTCGAG+TGG | 0.576149 | 8_1:-43206299 | None:intergenic |
| AAGTTCACATATCATGTCAT+CGG | 0.576819 | 8_1:+43207135 | Msa1195340:CDS |
| AGAGTACAACATCCTTGTGA+TGG | 0.579202 | 8_1:+43203642 | Msa1195340:CDS |
| CAATTACAGTAGAGAAACGC+GGG | 0.579723 | 8_1:-43207686 | None:intergenic |
| ATCATTAGCAATAGGTCCAG+AGG | 0.580010 | 8_1:-43206314 | None:intergenic |
| AGGGAAACCCACCATTTGAT+CGG | 0.583445 | 8_1:-43203743 | None:intergenic |
| CCTTGGCAGGGATTGAAAGC+AGG | 0.584404 | 8_1:+43205343 | Msa1195340:CDS |
| AGAGAGAATAAGAATCTGAC+GGG | 0.585309 | 8_1:+43205043 | Msa1195340:intron |
| CTTTAATAGAGCAAAGCCGT+AGG | 0.589565 | 8_1:+43205185 | Msa1195340:intron |
| CTTTGCTAGTCTCTCTGTCG+TGG | 0.590086 | 8_1:+43205512 | Msa1195340:intron |
| ATACCGAATGTGAAATGGTC+CGG | 0.593452 | 8_1:+43203610 | Msa1195340:CDS |
| TATCATTGTGAACTATATAG+GGG | 0.599817 | 8_1:+43207571 | Msa1195340:three_prime_UTR |
| ACCATCACTTACAATACCAC+GGG | 0.602147 | 8_1:-43205903 | None:intergenic |
| TTTAATAGAGCAAAGCCGTA+GGG | 0.604857 | 8_1:+43205186 | Msa1195340:intron |
| CACCATCACTTACAATACCA+CGG | 0.605886 | 8_1:-43205904 | None:intergenic |
| GGTTAAGTCATTTGTAAGTG+GGG | 0.606360 | 8_1:-43206359 | None:intergenic |
| GTCTGCATTTAAACGATGAG+AGG | 0.609688 | 8_1:+43207233 | Msa1195340:CDS |
| CTTCGTCTGATCCCACTCGA+AGG | 0.610986 | 8_1:+43206287 | Msa1195340:CDS |
| AAGCTGTATAAAATACTGCA+AGG | 0.612393 | 8_1:+43203466 | Msa1195340:CDS |
| ATCGCCACTCCTCCTTCCCG+TGG | 0.613928 | 8_1:+43205887 | Msa1195340:CDS |
| TCACAAAGTGCGGAGTGGAG+TGG | 0.616198 | 8_1:+43207328 | Msa1195340:three_prime_UTR |
| CCTGCTTTCAATCCCTGCCA+AGG | 0.616580 | 8_1:-43205343 | None:intergenic |
| AGGTTACGAAAACTATTCAT+CGG | 0.617792 | 8_1:-43207495 | None:intergenic |
| CCAGAGGTTCTCCTTCGAGT+GGG | 0.619887 | 8_1:-43206298 | None:intergenic |
| ATCCAGCGTGAGAGGACGAG+AGG | 0.620493 | 8_1:-43207071 | None:intergenic |
| TCCATTATTGTCGGTCACTG+AGG | 0.621842 | 8_1:+43205561 | Msa1195340:CDS |
| ACAACAAATTACAAACACAA+CGG | 0.624479 | 8_1:-43207821 | None:intergenic |
| CACTGCCAACAGCTGCATTG+CGG | 0.624991 | 8_1:-43207036 | None:intergenic |
| TTCGGTCAAGTGGATCTGCA+AGG | 0.626728 | 8_1:+43206993 | Msa1195340:CDS |
| ATTTCCTCATGGGTTTAGGG+AGG | 0.628140 | 8_1:+43203896 | Msa1195340:CDS |
| CTTACAATACCACGGGAAGG+AGG | 0.631667 | 8_1:-43205896 | None:intergenic |
| AATACCACGGGAAGGAGGAG+TGG | 0.634617 | 8_1:-43205891 | None:intergenic |
| TCTGCATTTAAACGATGAGA+GGG | 0.635819 | 8_1:+43207234 | Msa1195340:CDS |
| AAGTATGAAGCAAATTCTGA+GGG | 0.637275 | 8_1:-43205539 | None:intergenic |
| GCGACTCTAAATCATCCCTA+CGG | 0.637624 | 8_1:-43205201 | None:intergenic |
| TCAAGTGGATCTGCAAGGCG+AGG | 0.638769 | 8_1:+43206998 | Msa1195340:CDS |
| TCAGCATTTGCAGAAGCTAG+CGG | 0.639218 | 8_1:-43206039 | None:intergenic |
| GTCATCGTAGAAGAAGAAAA+GGG | 0.644208 | 8_1:-43202481 | None:intergenic |
| TAGGTGGTGGAAAAGATGGT+AGG | 0.644820 | 8_1:+43206251 | Msa1195340:intron |
| GCTAGCGGCAGACCAGAACT+CGG | 0.647842 | 8_1:-43206024 | None:intergenic |
| TTACAAGCTTATGCAATACA+GGG | 0.647897 | 8_1:-43203762 | None:intergenic |
| GTTGTACTCTCCTTCCACAC+CGG | 0.649985 | 8_1:-43203629 | None:intergenic |
| ATCATTGTGAACTATATAGG+GGG | 0.661977 | 8_1:+43207572 | Msa1195340:three_prime_UTR |
| GGCCAAGTAAATCCATCACA+AGG | 0.666479 | 8_1:-43203654 | None:intergenic |
| TCACTTACAATACCACGGGA+AGG | 0.675431 | 8_1:-43205899 | None:intergenic |
| GAATGTGAAATGGTCCGGTG+TGG | 0.716403 | 8_1:+43203615 | Msa1195340:CDS |
| ACAATTACAGTAGAGAAACG+CGG | 0.721587 | 8_1:-43207687 | None:intergenic |
| CACGCCTCCCTAAACCCATG+AGG | 0.721724 | 8_1:-43203900 | None:intergenic |
| AAGATGGTAGGAATATTGGG+TGG | 0.729848 | 8_1:+43206263 | Msa1195340:CDS |
| CTGTATAAAATACTGCAAGG+AGG | 0.737729 | 8_1:+43203469 | Msa1195340:CDS |
| AATTACAGTAGAGAAACGCG+GGG | 0.747677 | 8_1:-43207685 | None:intergenic |
| ATTACAGTAGAGAAACGCGG+GGG | 0.751501 | 8_1:-43207684 | None:intergenic |
| TTACAGTAGAGAAACGCGGG+GGG | 0.757505 | 8_1:-43207683 | None:intergenic |
| TATGCTTTATATCATCCCTG+AGG | 0.757607 | 8_1:-43207550 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTCTTTTTCAAAATT+CGG | - | chr8_1:43202771-43202790 | None:intergenic | 10.0% |
| !!! | TTTTTATTCTTTTGAATTTT+TGG | + | chr8_1:43202804-43202823 | Msa1195340:intron | 10.0% |
| !!! | TCCTATTTATATTTTATTTT+TGG | + | chr8_1:43205663-43205682 | Msa1195340:intron | 10.0% |
| !! | TCCAAAAATAAAATATAAAT+AGG | - | chr8_1:43205667-43205686 | None:intergenic | 10.0% |
| !!! | TTAAGTTATTTAATTTTTAG+TGG | + | chr8_1:43205963-43205982 | Msa1195340:intron | 10.0% |
| !!! | TCAATATTTATTTGAAATAT+TGG | + | chr8_1:43206551-43206570 | Msa1195340:intron | 10.0% |
| !!! | AATATTTTTCATTTTCTTAA+CGG | - | chr8_1:43207935-43207954 | None:intergenic | 10.0% |
| !!! | AATTTTCTTTTTCAAAATTC+GGG | - | chr8_1:43202770-43202789 | None:intergenic | 15.0% |
| !! | AAATAAAGTAATGATTGATT+AGG | + | chr8_1:43203138-43203157 | Msa1195340:intron | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | + | chr8_1:43203689-43203708 | Msa1195340:CDS | 15.0% |
| !!! | TTTTGTAAAATCTATTATCA+TGG | + | chr8_1:43204199-43204218 | Msa1195340:intron | 15.0% |
| !!! | TGAATCCTTTAATATTATTT+TGG | + | chr8_1:43204598-43204617 | Msa1195340:intron | 15.0% |
| !! | GATTACCAAAATAATATTAA+AGG | - | chr8_1:43204606-43204625 | None:intergenic | 15.0% |
| !! | AAAAACTAATTGATACTTAA+TGG | - | chr8_1:43204727-43204746 | None:intergenic | 15.0% |
| !! | GTGAATAAAAAGTTATTAAA+AGG | + | chr8_1:43204821-43204840 | Msa1195340:intron | 15.0% |
| !!! | AATGATTTTAAAAGACATAA+TGG | - | chr8_1:43205474-43205493 | None:intergenic | 15.0% |
| !! | AAAATATAAATAGGAAAACA+AGG | - | chr8_1:43205658-43205677 | None:intergenic | 15.0% |
| !!! | AAAAAATTAAAGTTTTGTCT+TGG | + | chr8_1:43206625-43206644 | Msa1195340:intron | 15.0% |
| !! | TTTCTTTATTGTATACTTAT+AGG | - | chr8_1:43207408-43207427 | None:intergenic | 15.0% |
| !!! | ACAATAAAGAAAATATGTTT+TGG | + | chr8_1:43207416-43207435 | Msa1195340:three_prime_UTR | 15.0% |
| !! | GTTAAGAAAATGAAAAATAT+TGG | + | chr8_1:43207934-43207953 | Msa1195340:three_prime_UTR | 15.0% |
| !! | ATTAAACCCTAATTGAAAAT+CGG | - | chr8_1:43202539-43202558 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTGTGAATTTT+AGG | + | chr8_1:43202670-43202689 | Msa1195340:intron | 20.0% |
| !!! | TTTTGTTGTTGTGAATTTTA+GGG | + | chr8_1:43202671-43202690 | Msa1195340:intron | 20.0% |
| !!! | TCAATAACAACAAAAGTATT+CGG | - | chr8_1:43202842-43202861 | None:intergenic | 20.0% |
| !! | TAAATTTACGAACTGATATT+TGG | + | chr8_1:43203218-43203237 | Msa1195340:intron | 20.0% |
| !!! | ATTTTTGTTTTGTTTGATTC+AGG | + | chr8_1:43203402-43203421 | Msa1195340:intron | 20.0% |
| !! | AGTTATTATGTTTGTAAGTA+TGG | - | chr8_1:43204544-43204563 | None:intergenic | 20.0% |
| !! | TTGATTGTATACCTATTATA+TGG | - | chr8_1:43204659-43204678 | None:intergenic | 20.0% |
| !! | GAATTTATGCCAATTAAATT+TGG | + | chr8_1:43204845-43204864 | Msa1195340:intron | 20.0% |
| !! | AATAAGTAATCATAAAGACT+AGG | - | chr8_1:43204924-43204943 | None:intergenic | 20.0% |
| !!! | GTTCTTATGTATTTTTTAAG+AGG | + | chr8_1:43205232-43205251 | Msa1195340:intron | 20.0% |
| !!! | TTATGTATTTTTTAAGAGGA+AGG | + | chr8_1:43205236-43205255 | Msa1195340:intron | 20.0% |
| !! | TGTCAAATGCTAAATAATAA+AGG | - | chr8_1:43205276-43205295 | None:intergenic | 20.0% |
| !!! | CATTTGACATATCTTTTAAT+TGG | + | chr8_1:43205287-43205306 | Msa1195340:intron | 20.0% |
| !!! | TTTAAAATCATTGTTGATTG+TGG | + | chr8_1:43205482-43205501 | Msa1195340:intron | 20.0% |
| !!! | TTAAAATCATTGTTGATTGT+GGG | + | chr8_1:43205483-43205502 | Msa1195340:intron | 20.0% |
| !!! | TTTTTTCTTTGTCATAGTTT+AGG | + | chr8_1:43205750-43205769 | Msa1195340:intron | 20.0% |
| !! | TAACAAATGAAAATCATTCA+AGG | - | chr8_1:43206200-43206219 | None:intergenic | 20.0% |
| !!! | TAATTTTTTCCTTGGATAAA+GGG | - | chr8_1:43206614-43206633 | None:intergenic | 20.0% |
| !!! | TTAATTTTTTCCTTGGATAA+AGG | - | chr8_1:43206615-43206634 | None:intergenic | 20.0% |
| !!! | CAAAACTTTAATTTTTTCCT+TGG | - | chr8_1:43206622-43206641 | None:intergenic | 20.0% |
| !! | CACATCAAACATAAATAATT+TGG | + | chr8_1:43207186-43207205 | Msa1195340:CDS | 20.0% |
| !!! | ATAAAGAAAATATGTTTTGG+TGG | + | chr8_1:43207419-43207438 | Msa1195340:three_prime_UTR | 20.0% |
| !! | AAGAAAACAAATGATAGTAA+AGG | - | chr8_1:43207518-43207537 | None:intergenic | 20.0% |
| !! | ATATCATTGTGAACTATATA+GGG | + | chr8_1:43207570-43207589 | Msa1195340:three_prime_UTR | 20.0% |
| !! | TTCAATTCCGATTTTCAATT+AGG | + | chr8_1:43202529-43202548 | Msa1195340:five_prime_UTR | 25.0% |
| !! | TCAATTCCGATTTTCAATTA+GGG | + | chr8_1:43202530-43202549 | Msa1195340:five_prime_UTR | 25.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | + | chr8_1:43202538-43202557 | Msa1195340:exon | 25.0% |
| ! | ATCACAAAAATGCAAGAAAT+TGG | - | chr8_1:43202649-43202668 | None:intergenic | 25.0% |
| !!! | TTAATTTGTGTTTTTGTTGC+AGG | + | chr8_1:43202697-43202716 | Msa1195340:intron | 25.0% |
| ! | TTCTTCATTTGTCTGAATAT+TGG | - | chr8_1:43202725-43202744 | None:intergenic | 25.0% |
| ! | TTATTGAAGTTTGATGAGAA+GGG | + | chr8_1:43202855-43202874 | Msa1195340:intron | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | + | chr8_1:43202932-43202951 | Msa1195340:intron | 25.0% |
| ! | TATGGGATATTGAATTTCAT+TGG | + | chr8_1:43202958-43202977 | Msa1195340:intron | 25.0% |
| ! | TCAGTTAAGTTAATGATTAC+TGG | + | chr8_1:43203111-43203130 | Msa1195340:intron | 25.0% |
| ! | TATAACTTCAAATACCAAAC+CGG | - | chr8_1:43203176-43203195 | None:intergenic | 25.0% |
| ! | ATACACAAATTCACTAAGTT+GGG | - | chr8_1:43203504-43203523 | None:intergenic | 25.0% |
| ! | AATACACAAATTCACTAAGT+TGG | - | chr8_1:43203505-43203524 | None:intergenic | 25.0% |
| !! | CTTAGTGAATTTGTGTATTT+TGG | + | chr8_1:43203506-43203525 | Msa1195340:intron | 25.0% |
| !!! | TTGGCTTAAATGTTTTTTGT+TGG | + | chr8_1:43203564-43203583 | Msa1195340:intron | 25.0% |
| !!! | TGGCTTAAATGTTTTTTGTT+GGG | + | chr8_1:43203565-43203584 | Msa1195340:intron | 25.0% |
| ! | TTGAGACATTATAAGAAAAC+TGG | - | chr8_1:43203798-43203817 | None:intergenic | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | + | chr8_1:43203857-43203876 | Msa1195340:CDS | 25.0% |
| !! | TTTTCTGATTTTATTCAGCA+TGG | + | chr8_1:43204118-43204137 | Msa1195340:intron | 25.0% |
| !! | CAAAATAAGAAAGCATGATA+GGG | - | chr8_1:43204184-43204203 | None:intergenic | 25.0% |
| !! | ACAAAATAAGAAAGCATGAT+AGG | - | chr8_1:43204185-43204204 | None:intergenic | 25.0% |
| ! | GCTATCATGAATTATTTATG+TGG | + | chr8_1:43204252-43204271 | Msa1195340:intron | 25.0% |
| ! | AATTTGGACATCCATATAAT+AGG | + | chr8_1:43204645-43204664 | Msa1195340:intron | 25.0% |
| ! | CCAATGAAACCAAATTTAAT+TGG | - | chr8_1:43204857-43204876 | None:intergenic | 25.0% |
| !! | CCAATTAAATTTGGTTTCAT+TGG | + | chr8_1:43204854-43204873 | Msa1195340:intron | 25.0% |
| ! | AATCAATGGCTATTAAGAAA+GGG | - | chr8_1:43205140-43205159 | None:intergenic | 25.0% |
| ! | AAATCAATGGCTATTAAGAA+AGG | - | chr8_1:43205141-43205160 | None:intergenic | 25.0% |
| !!! | CATTTTCAGGTAAAAATCAA+TGG | - | chr8_1:43205154-43205173 | None:intergenic | 25.0% |
| ! | ATTGGATACTCTTTCTTATT+TGG | + | chr8_1:43205305-43205324 | Msa1195340:intron | 25.0% |
| ! | AAAGAGAAGTTAAAACAACA+AGG | - | chr8_1:43206080-43206099 | None:intergenic | 25.0% |
| ! | TCCAACATCATATATGATTA+AGG | + | chr8_1:43206525-43206544 | Msa1195340:intron | 25.0% |
| ! | TCCTTAATCATATATGATGT+TGG | - | chr8_1:43206529-43206548 | None:intergenic | 25.0% |
| ! | TTAGAAACCAACAAAAGAAA+TGG | - | chr8_1:43206657-43206676 | None:intergenic | 25.0% |
| ! | TATGATAACTATACAACACA+CGG | - | chr8_1:43206845-43206864 | None:intergenic | 25.0% |
| ! | TTGTATAAACTTAATCAGCA+GGG | - | chr8_1:43206877-43206896 | None:intergenic | 25.0% |
| ! | TACAAGGTTATCTGTTTATA+TGG | + | chr8_1:43206892-43206911 | Msa1195340:intron | 25.0% |
| ! | TAAACCTTTCAGAATTTACA+AGG | - | chr8_1:43207299-43207318 | None:intergenic | 25.0% |
| ! | CATATCATTGTGAACTATAT+AGG | + | chr8_1:43207569-43207588 | Msa1195340:three_prime_UTR | 25.0% |
| ! | TATCATTGTGAACTATATAG+GGG | + | chr8_1:43207571-43207590 | Msa1195340:three_prime_UTR | 25.0% |
| ! | ACAACAAATTACAAACACAA+CGG | - | chr8_1:43207824-43207843 | None:intergenic | 25.0% |
| !!! | GTGTTTGTAATTTGTTGTAA+TGG | + | chr8_1:43207826-43207845 | Msa1195340:three_prime_UTR | 25.0% |
| ! | TAACACATGCATACAATTAA+TGG | - | chr8_1:43207905-43207924 | None:intergenic | 25.0% |
| !! | ATTTTTCATTTTCTTAACGG+TGG | - | chr8_1:43207932-43207951 | None:intergenic | 25.0% |
| AAAATCCAAAAAACAGCGTT+AGG | + | chr8_1:43202328-43202347 | Msa1195340:five_prime_UTR | 30.0% | |
| GAAAAAGGAAAGGACAAAAT+AGG | - | chr8_1:43202444-43202463 | None:intergenic | 30.0% | |
| ! | AAGAAGAAAAGGGTATATCT+GGG | - | chr8_1:43202474-43202493 | None:intergenic | 30.0% |
| !! | TCTTTTGGAGAGATCTATTT+AGG | + | chr8_1:43202611-43202630 | Msa1195340:CDS | 30.0% |
| GTTATTGAAGTTTGATGAGA+AGG | + | chr8_1:43202854-43202873 | Msa1195340:intron | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | + | chr8_1:43202940-43202959 | Msa1195340:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | + | chr8_1:43202941-43202960 | Msa1195340:intron | 30.0% | |
| TAATCGATACTTCGATTACA+AGG | - | chr8_1:43203026-43203045 | None:intergenic | 30.0% | |
| AGGTAATTAGATGATTGATC+AGG | + | chr8_1:43203053-43203072 | Msa1195340:intron | 30.0% | |
| TGATTAACCAAGTCTGATTA+TGG | - | chr8_1:43203094-43203113 | None:intergenic | 30.0% | |
| TTGCTTCATACAACAATTGA+GGG | - | chr8_1:43203447-43203466 | None:intergenic | 30.0% | |
| TTTGCTTCATACAACAATTG+AGG | - | chr8_1:43203448-43203467 | None:intergenic | 30.0% | |
| AAGCTGTATAAAATACTGCA+AGG | + | chr8_1:43203466-43203485 | Msa1195340:CDS | 30.0% | |
| TAGACTTCATATTACTCACT+TGG | + | chr8_1:43203545-43203564 | Msa1195340:intron | 30.0% | |
| ! | TTTGTTGGGTTTCTTTTCTT+TGG | + | chr8_1:43203579-43203598 | Msa1195340:intron | 30.0% |
| TGAATAAATCCTCAAGACTA+GGG | - | chr8_1:43203678-43203697 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | - | chr8_1:43203679-43203698 | None:intergenic | 30.0% | |
| TTACAAGCTTATGCAATACA+GGG | - | chr8_1:43203765-43203784 | None:intergenic | 30.0% | |
| ATTACAAGCTTATGCAATAC+AGG | - | chr8_1:43203766-43203785 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | + | chr8_1:43203858-43203877 | Msa1195340:CDS | 30.0% |
| AATTGATACATAACAAGCGT+TGG | - | chr8_1:43203988-43204007 | None:intergenic | 30.0% | |
| ! | ATTCCCTATAGGTACTTTTA+TGG | + | chr8_1:43204086-43204105 | Msa1195340:intron | 30.0% |
| !! | ATGCCATAAAAGTACCTATA+GGG | - | chr8_1:43204092-43204111 | None:intergenic | 30.0% |
| ATGATAGGGAATATATCGAT+GGG | - | chr8_1:43204170-43204189 | None:intergenic | 30.0% | |
| ATCATGGAAAATCCTATATC+TGG | + | chr8_1:43204215-43204234 | Msa1195340:intron | 30.0% | |
| ! | AAAATCCTATATCTGGAATC+TGG | + | chr8_1:43204222-43204241 | Msa1195340:intron | 30.0% |
| GCTGATTACTACTATTTAGT+AGG | + | chr8_1:43204278-43204297 | Msa1195340:intron | 30.0% | |
| GATTACTACTATTTAGTAGG+AGG | + | chr8_1:43204281-43204300 | Msa1195340:intron | 30.0% | |
| AAGAAAATAGAATCAATGCC+AGG | - | chr8_1:43204406-43204425 | None:intergenic | 30.0% | |
| AACAATCATGCAAGGATTAT+AGG | - | chr8_1:43204450-43204469 | None:intergenic | 30.0% | |
| AATGGATCTTAGTTCAAACA+AGG | - | chr8_1:43204517-43204536 | None:intergenic | 30.0% | |
| ATAACTTATGTTGCTGTAAG+TGG | + | chr8_1:43204962-43204981 | Msa1195340:intron | 30.0% | |
| ATGAATACTCATCTTGGAAT+TGG | + | chr8_1:43205085-43205104 | Msa1195340:CDS | 30.0% | |
| ! | AGCAAAAAACTCACATTTTC+AGG | - | chr8_1:43205167-43205186 | None:intergenic | 30.0% |
| GAAAGTTTCTACATCTATTG+AGG | + | chr8_1:43205402-43205421 | Msa1195340:CDS | 30.0% | |
| TACATCTATTGAGGTATGAT+TGG | + | chr8_1:43205411-43205430 | Msa1195340:intron | 30.0% | |
| AAGTATGAAGCAAATTCTGA+GGG | - | chr8_1:43205542-43205561 | None:intergenic | 30.0% | |
| CTTCATACTTCCATTATTGT+CGG | + | chr8_1:43205552-43205571 | Msa1195340:CDS | 30.0% | |
| ! | CTTTTCAGATAAGCATAATC+TGG | - | chr8_1:43205599-43205618 | None:intergenic | 30.0% |
| ! | AACCTAAACTATGGTTTTCA+AGG | - | chr8_1:43205705-43205724 | None:intergenic | 30.0% |
| !! | TCATAGTTTAGGTTCTAGAT+GGG | + | chr8_1:43205761-43205780 | Msa1195340:intron | 30.0% |
| AATCGAAGACATAATCAAAC+TGG | - | chr8_1:43205838-43205857 | None:intergenic | 30.0% | |
| AGTTTGATTATGTCTTCGAT+TGG | + | chr8_1:43205837-43205856 | Msa1195340:CDS | 30.0% | |
| !!! | TACCAGTGCATTTTTTAATG+TGG | + | chr8_1:43206218-43206237 | Msa1195340:intron | 30.0% |
| GAAAAGATGGTAGGAATATT+GGG | + | chr8_1:43206260-43206279 | Msa1195340:CDS | 30.0% | |
| AAGATTCCATCATTAGCAAT+AGG | - | chr8_1:43206325-43206344 | None:intergenic | 30.0% | |
| ! | TATGGTGCGTGTTTTATATA+TGG | + | chr8_1:43206396-43206415 | Msa1195340:intron | 30.0% |
| ! | ATGGTGCGTGTTTTATATAT+GGG | + | chr8_1:43206397-43206416 | Msa1195340:intron | 30.0% |
| AATCATATATGATGTTGGAC+AGG | - | chr8_1:43206524-43206543 | None:intergenic | 30.0% | |
| ACCATTAAACTCAGTAGTAT+GGG | - | chr8_1:43206767-43206786 | None:intergenic | 30.0% | |
| GAGTTTAATGGTGTGAATAT+TGG | + | chr8_1:43206775-43206794 | Msa1195340:intron | 30.0% | |
| CTTGTATAAACTTAATCAGC+AGG | - | chr8_1:43206878-43206897 | None:intergenic | 30.0% | |
| ! | CTGCTGATTAAGTTTATACA+AGG | + | chr8_1:43206876-43206895 | Msa1195340:intron | 30.0% |
| TATCGAGTTCGAATTTCTTT+CGG | + | chr8_1:43206975-43206994 | Msa1195340:CDS | 30.0% | |
| AAGTTCACATATCATGTCAT+CGG | + | chr8_1:43207135-43207154 | Msa1195340:CDS | 30.0% | |
| TCAGAATTTACAAGGAAGAA+AGG | - | chr8_1:43207291-43207310 | None:intergenic | 30.0% | |
| TCTTCCTTGTAAATTCTGAA+AGG | + | chr8_1:43207292-43207311 | Msa1195340:three_prime_UTR | 30.0% | |
| ! | ATACTCATTTTCACAAAGTG+CGG | + | chr8_1:43207318-43207337 | Msa1195340:three_prime_UTR | 30.0% |
| AGGTTACGAAAACTATTCAT+CGG | - | chr8_1:43207498-43207517 | None:intergenic | 30.0% | |
| !!! | TCTTTGATATTTTTAGCCTC+AGG | + | chr8_1:43207534-43207553 | Msa1195340:three_prime_UTR | 30.0% |
| !!! | CTTTGATATTTTTAGCCTCA+GGG | + | chr8_1:43207535-43207554 | Msa1195340:three_prime_UTR | 30.0% |
| ATCATTGTGAACTATATAGG+GGG | + | chr8_1:43207572-43207591 | Msa1195340:three_prime_UTR | 30.0% | |
| CAACAAATTACAAACACAAC+GGG | - | chr8_1:43207823-43207842 | None:intergenic | 30.0% | |
| GACAAAATATCTTGTGTAAG+TGG | + | chr8_1:43207877-43207896 | Msa1195340:three_prime_UTR | 30.0% | |
| TATCTGGGAAATGCTGAAAA+AGG | - | chr8_1:43202459-43202478 | None:intergenic | 35.0% | |
| ! | GAAGAAGAAAAGGGTATATC+TGG | - | chr8_1:43202475-43202494 | None:intergenic | 35.0% |
| GTCATCGTAGAAGAAGAAAA+GGG | - | chr8_1:43202484-43202503 | None:intergenic | 35.0% | |
| ATTGGAAATAAGTTCCGTCT+TGG | + | chr8_1:43202569-43202588 | Msa1195340:CDS | 35.0% | |
| TTGGAAATAAGTTCCGTCTT+GGG | + | chr8_1:43202570-43202589 | Msa1195340:CDS | 35.0% | |
| ! | TACCAATTTTTCTCCCAAGA+CGG | - | chr8_1:43202586-43202605 | None:intergenic | 35.0% |
| !!! | AAAATTGGTAGCGGATCTTT+TGG | + | chr8_1:43202596-43202615 | Msa1195340:CDS | 35.0% |
| ! | GTTTTCGATACTGAACTTGT+TGG | + | chr8_1:43202990-43203009 | Msa1195340:intron | 35.0% |
| GTAATCACCATAATCAGACT+TGG | + | chr8_1:43203084-43203103 | Msa1195340:intron | 35.0% | |
| ! | GATTAGGTGATGTTGATTAC+CGG | + | chr8_1:43203154-43203173 | Msa1195340:intron | 35.0% |
| CTGTATAAAATACTGCAAGG+AGG | + | chr8_1:43203469-43203488 | Msa1195340:CDS | 35.0% | |
| !! | ATCCTTGTGATGGATTTACT+TGG | + | chr8_1:43203652-43203671 | Msa1195340:CDS | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | + | chr8_1:43203893-43203912 | Msa1195340:CDS | 35.0% | |
| TTCATATCTGCCTCTTATGT+AGG | + | chr8_1:43204007-43204026 | Msa1195340:intron | 35.0% | |
| ATGATGTACACCTACATAAG+AGG | - | chr8_1:43204020-43204039 | None:intergenic | 35.0% | |
| !! | TAGGTGTACATCATTGACTT+TGG | + | chr8_1:43204026-43204045 | Msa1195340:intron | 35.0% |
| !! | GATGCCATAAAAGTACCTAT+AGG | - | chr8_1:43204093-43204112 | None:intergenic | 35.0% |
| TGATAGGGAATATATCGATG+GGG | - | chr8_1:43204169-43204188 | None:intergenic | 35.0% | |
| CATGATAGGGAATATATCGA+TGG | - | chr8_1:43204171-43204190 | None:intergenic | 35.0% | |
| AACATCCAGATTCCAGATAT+AGG | - | chr8_1:43204230-43204249 | None:intergenic | 35.0% | |
| ATGCAAATAACTTAGCGAAC+TGG | - | chr8_1:43204476-43204495 | None:intergenic | 35.0% | |
| GTTTGTAAGTATGGCATCAA+TGG | - | chr8_1:43204535-43204554 | None:intergenic | 35.0% | |
| GATTCTTATTCTCTCTGCAA+GGG | - | chr8_1:43205039-43205058 | None:intergenic | 35.0% | |
| AGATTCTTATTCTCTCTGCA+AGG | - | chr8_1:43205040-43205059 | None:intergenic | 35.0% | |
| CAGAGAGAATAAGAATCTGA+CGG | + | chr8_1:43205042-43205061 | Msa1195340:intron | 35.0% | |
| AGAGAGAATAAGAATCTGAC+GGG | + | chr8_1:43205043-43205062 | Msa1195340:intron | 35.0% | |
| GCTAGTATGAATACTCATCT+TGG | + | chr8_1:43205079-43205098 | Msa1195340:CDS | 35.0% | |
| TTTAATAGAGCAAAGCCGTA+GGG | + | chr8_1:43205186-43205205 | Msa1195340:intron | 35.0% | |
| GAAGTATGAAGCAAATTCTG+AGG | - | chr8_1:43205543-43205562 | None:intergenic | 35.0% | |
| GTCCTTGAAAACCATAGTTT+AGG | + | chr8_1:43205700-43205719 | Msa1195340:intron | 35.0% | |
| !! | ACCATAGTTTAGGTTCTAGA+TGG | + | chr8_1:43205710-43205729 | Msa1195340:intron | 35.0% |
| !! | CCATAGTTTAGGTTCTAGAT+GGG | + | chr8_1:43205711-43205730 | Msa1195340:intron | 35.0% |
| !! | GTCATAGTTTAGGTTCTAGA+TGG | + | chr8_1:43205760-43205779 | Msa1195340:intron | 35.0% |
| ACATAATCAAACTGGAATCC+TGG | - | chr8_1:43205830-43205849 | None:intergenic | 35.0% | |
| CACCACATTAAAAAATGCAC+TGG | - | chr8_1:43206223-43206242 | None:intergenic | 35.0% | |
| GGAAAAGATGGTAGGAATAT+TGG | + | chr8_1:43206259-43206278 | Msa1195340:CDS | 35.0% | |
| GGTTAAGTCATTTGTAAGTG+GGG | - | chr8_1:43206362-43206381 | None:intergenic | 35.0% | |
| CGGTTAAGTCATTTGTAAGT+GGG | - | chr8_1:43206363-43206382 | None:intergenic | 35.0% | |
| CCACTTACAAATGACTTAAC+CGG | + | chr8_1:43206361-43206380 | Msa1195340:CDS | 35.0% | |
| ! | GTGCATTCCATTTCTTTTGT+TGG | + | chr8_1:43206647-43206666 | Msa1195340:intron | 35.0% |
| ! | GTTGGTTTCTAAATGTAAGC+AGG | + | chr8_1:43206665-43206684 | Msa1195340:intron | 35.0% |
| ACCCATACTACTGAGTTTAA+TGG | + | chr8_1:43206763-43206782 | Msa1195340:intron | 35.0% | |
| CACCATTAAACTCAGTAGTA+TGG | - | chr8_1:43206768-43206787 | None:intergenic | 35.0% | |
| CGTACTGTGCAAGTTAATAT+TGG | + | chr8_1:43206798-43206817 | Msa1195340:intron | 35.0% | |
| TGTTTCTTCCAGATGATACT+CGG | - | chr8_1:43207168-43207187 | None:intergenic | 35.0% | |
| AATTTGGATTCAACGCTTAG+AGG | + | chr8_1:43207202-43207221 | Msa1195340:CDS | 35.0% | |
| TCTGCATTTAAACGATGAGA+GGG | + | chr8_1:43207234-43207253 | Msa1195340:CDS | 35.0% | |
| AGAAAAAGCTGCAAGCAAAT+TGG | + | chr8_1:43207374-43207393 | Msa1195340:three_prime_UTR | 35.0% | |
| GAAAAAGCTGCAAGCAAATT+GGG | + | chr8_1:43207375-43207394 | Msa1195340:three_prime_UTR | 35.0% | |
| !!! | TTTACGAGGCTAGTTTTGTT+AGG | - | chr8_1:43207448-43207467 | None:intergenic | 35.0% |
| ! | ATGAACAGAAGCTTTTTACG+AGG | - | chr8_1:43207462-43207481 | None:intergenic | 35.0% |
| TATGCTTTATATCATCCCTG+AGG | - | chr8_1:43207553-43207572 | None:intergenic | 35.0% | |
| ACAATTACAGTAGAGAAACG+CGG | - | chr8_1:43207690-43207709 | None:intergenic | 35.0% | |
| CACATGTAAAGCTTGATCTT+TGG | - | chr8_1:43207732-43207751 | None:intergenic | 35.0% | |
| ATCCAAAAAACAGCGTTAGG+TGG | + | chr8_1:43202331-43202350 | Msa1195340:five_prime_UTR | 40.0% | |
| !!! | TACCACCTAACGCTGTTTTT+TGG | - | chr8_1:43202336-43202355 | None:intergenic | 40.0% |
| GGGAAATGCTGAAAAAGGAA+AGG | - | chr8_1:43202454-43202473 | None:intergenic | 40.0% | |
| CGTCATCGTAGAAGAAGAAA+AGG | - | chr8_1:43202485-43202504 | None:intergenic | 40.0% | |
| GGTTTAATGGAACCTCGAAT+TGG | + | chr8_1:43202551-43202570 | Msa1195340:exon | 40.0% | |
| CGGAACTTATTTCCAATTCG+AGG | - | chr8_1:43202566-43202585 | None:intergenic | 40.0% | |
| TTCCGTCTTGGGAGAAAAAT+TGG | + | chr8_1:43202581-43202600 | Msa1195340:CDS | 40.0% | |
| CTTGGGAGAAAAATTGGTAG+CGG | + | chr8_1:43202587-43202606 | Msa1195340:CDS | 40.0% | |
| !! | GAAGTATCGATTACAGACGT+AGG | + | chr8_1:43203033-43203052 | Msa1195340:intron | 40.0% |
| ! | GATGATTGATCAGGTTAGTC+AGG | + | chr8_1:43203062-43203081 | Msa1195340:intron | 40.0% |
| !! | ATACAACAATTGAGGGTGCT+TGG | - | chr8_1:43203440-43203459 | None:intergenic | 40.0% |
| !! | GGTTTCTTTTCTTTGGAAGC+TGG | + | chr8_1:43203586-43203605 | Msa1195340:intron | 40.0% |
| CTGGAATACCGAATGTGAAA+TGG | + | chr8_1:43203605-43203624 | Msa1195340:CDS | 40.0% | |
| ATACCGAATGTGAAATGGTC+CGG | + | chr8_1:43203610-43203629 | Msa1195340:CDS | 40.0% | |
| AGAGTACAACATCCTTGTGA+TGG | + | chr8_1:43203642-43203661 | Msa1195340:CDS | 40.0% | |
| TCTTATGCTTGCCGATCAAA+TGG | + | chr8_1:43203732-43203751 | Msa1195340:CDS | 40.0% | |
| GTCCCGATGTAAAAATGACT+TGG | - | chr8_1:43203863-43203882 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | + | chr8_1:43203885-43203904 | Msa1195340:CDS | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | + | chr8_1:43203886-43203905 | Msa1195340:CDS | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | - | chr8_1:43203892-43203911 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | + | chr8_1:43203892-43203911 | Msa1195340:CDS | 40.0% | |
| CACATCAGCATATTCCCTAT+AGG | + | chr8_1:43204075-43204094 | Msa1195340:CDS | 40.0% | |
| ! | ACTAATTTTGAGCTTTGCGC+AGG | + | chr8_1:43204359-43204378 | Msa1195340:intron | 40.0% |
| ! | CTAATTTTGAGCTTTGCGCA+GGG | + | chr8_1:43204360-43204379 | Msa1195340:intron | 40.0% |
| ACTGGTGTAACAATCATGCA+AGG | - | chr8_1:43204458-43204477 | None:intergenic | 40.0% | |
| TATGTTGCTGTAAGTGGTCA+AGG | + | chr8_1:43204968-43204987 | Msa1195340:intron | 40.0% | |
| CTTTAATAGAGCAAAGCCGT+AGG | + | chr8_1:43205185-43205204 | Msa1195340:intron | 40.0% | |
| CTATTCATCCGTGAAGGTTT+GGG | + | chr8_1:43205632-43205651 | Msa1195340:intron | 40.0% | |
| ! | CCCATCTAGAACCTAAACTA+TGG | - | chr8_1:43205714-43205733 | None:intergenic | 40.0% |
| ACCATCACTTACAATACCAC+GGG | - | chr8_1:43205906-43205925 | None:intergenic | 40.0% | |
| CACCATCACTTACAATACCA+CGG | - | chr8_1:43205907-43205926 | None:intergenic | 40.0% | |
| AGTGACAATGTGACACTTAC+AGG | + | chr8_1:43205987-43206006 | Msa1195340:intron | 40.0% | |
| GTGACAATGTGACACTTACA+GGG | + | chr8_1:43205988-43206007 | Msa1195340:intron | 40.0% | |
| GGATGAGTCAGATGACAAAA+AGG | - | chr8_1:43206179-43206198 | None:intergenic | 40.0% | |
| AAGATGGTAGGAATATTGGG+TGG | + | chr8_1:43206263-43206282 | Msa1195340:CDS | 40.0% | |
| ATCATTAGCAATAGGTCCAG+AGG | - | chr8_1:43206317-43206336 | None:intergenic | 40.0% | |
| TCTGGACCTATTGCTAATGA+TGG | + | chr8_1:43206316-43206335 | Msa1195340:CDS | 40.0% | |
| CCGGTTAAGTCATTTGTAAG+TGG | - | chr8_1:43206364-43206383 | None:intergenic | 40.0% | |
| AACCGGATCTAAAGATGCTA+TGG | + | chr8_1:43206378-43206397 | Msa1195340:CDS | 40.0% | |
| CACCATAGCATCTTTAGATC+CGG | - | chr8_1:43206383-43206402 | None:intergenic | 40.0% | |
| CTTGCAGAAGTCAAAGATGA+TGG | + | chr8_1:43206450-43206469 | Msa1195340:intron | 40.0% | |
| GACTGTTTACCCTTTATCCA+AGG | + | chr8_1:43206602-43206621 | Msa1195340:intron | 40.0% | |
| TCGAATTTCTTTCGGTCAAG+TGG | + | chr8_1:43206983-43207002 | Msa1195340:CDS | 40.0% | |
| GTCTGCATTTAAACGATGAG+AGG | + | chr8_1:43207233-43207252 | Msa1195340:CDS | 40.0% | |
| AATTACAGTAGAGAAACGCG+GGG | - | chr8_1:43207688-43207707 | None:intergenic | 40.0% | |
| CAATTACAGTAGAGAAACGC+GGG | - | chr8_1:43207689-43207708 | None:intergenic | 40.0% | |
| GCGTTTCTCTACTGTAATTG+TGG | + | chr8_1:43207689-43207708 | Msa1195340:three_prime_UTR | 40.0% | |
| TCAAGCTTTACATGTGAGAC+TGG | + | chr8_1:43207736-43207755 | Msa1195340:three_prime_UTR | 40.0% | |
| CTTTACATGTGAGACTGGAA+TGG | + | chr8_1:43207741-43207760 | Msa1195340:three_prime_UTR | 40.0% | |
| ! | GGTGATGTTGATTACCGGTT+TGG | + | chr8_1:43203159-43203178 | Msa1195340:intron | 45.0% |
| ACACCGGACCATTTCACATT+CGG | - | chr8_1:43203616-43203635 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACA+AGG | - | chr8_1:43203657-43203676 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | + | chr8_1:43203666-43203685 | Msa1195340:CDS | 45.0% |
| TATGCTTGCCGATCAAATGG+TGG | + | chr8_1:43203735-43203754 | Msa1195340:CDS | 45.0% | |
| ATGCTTGCCGATCAAATGGT+GGG | + | chr8_1:43203736-43203755 | Msa1195340:CDS | 45.0% | |
| AGGGAAACCCACCATTTGAT+CGG | - | chr8_1:43203746-43203765 | None:intergenic | 45.0% | |
| ATTTCCTCATGGGTTTAGGG+AGG | + | chr8_1:43203896-43203915 | Msa1195340:CDS | 45.0% | |
| !!! | CTTTCCTGGTTTTGCATTCC+TGG | + | chr8_1:43204385-43204404 | Msa1195340:intron | 45.0% |
| AATGCCAGGAATGCAAAACC+AGG | - | chr8_1:43204392-43204411 | None:intergenic | 45.0% | |
| TATTACACACCCCAGAGAGA+GGG | - | chr8_1:43204893-43204912 | None:intergenic | 45.0% | |
| ATATTACACACCCCAGAGAG+AGG | - | chr8_1:43204894-43204913 | None:intergenic | 45.0% | |
| GCGACTCTAAATCATCCCTA+CGG | - | chr8_1:43205204-43205223 | None:intergenic | 45.0% | |
| ! | AGGGATGATTTAGAGTCGCT+TGG | + | chr8_1:43205205-43205224 | Msa1195340:CDS | 45.0% |
| ! | GGTATTTCTGCAGTCTACCT+TGG | + | chr8_1:43205326-43205345 | Msa1195340:intron | 45.0% |
| TCCATTATTGTCGGTCACTG+AGG | + | chr8_1:43205561-43205580 | Msa1195340:CDS | 45.0% | |
| ACCTCAGTGACCGACAATAA+TGG | - | chr8_1:43205565-43205584 | None:intergenic | 45.0% | |
| CCAAACCTTCACGGATGAAT+AGG | - | chr8_1:43205634-43205653 | None:intergenic | 45.0% | |
| CCTATTCATCCGTGAAGGTT+TGG | + | chr8_1:43205631-43205650 | Msa1195340:intron | 45.0% | |
| AAACAAGGCCCAAACCTTCA+CGG | - | chr8_1:43205643-43205662 | None:intergenic | 45.0% | |
| TCACTTACAATACCACGGGA+AGG | - | chr8_1:43205902-43205921 | None:intergenic | 45.0% | |
| TCCCGTGGTATTGTAAGTGA+TGG | + | chr8_1:43205902-43205921 | Msa1195340:intron | 45.0% | |
| TGCTGTCTCATTACGTTAGC+TGG | + | chr8_1:43205927-43205946 | Msa1195340:intron | 45.0% | |
| TCAGCATTTGCAGAAGCTAG+CGG | - | chr8_1:43206042-43206061 | None:intergenic | 45.0% | |
| CTAGCTTCTGCAAATGCTGA+TGG | + | chr8_1:43206042-43206061 | Msa1195340:CDS | 45.0% | |
| TTAATGTGGTGCCTCTGTGT+AGG | + | chr8_1:43206232-43206251 | Msa1195340:intron | 45.0% | |
| !! | TGTGTAGGTGGTGGAAAAGA+TGG | + | chr8_1:43206247-43206266 | Msa1195340:intron | 45.0% |
| !! | TAGGTGGTGGAAAAGATGGT+AGG | + | chr8_1:43206251-43206270 | Msa1195340:intron | 45.0% |
| CATCTTACATTCCCCTTCTC+CGG | + | chr8_1:43206725-43206744 | Msa1195340:intron | 45.0% | |
| ATCTTACATTCCCCTTCTCC+GGG | + | chr8_1:43206726-43206745 | Msa1195340:intron | 45.0% | |
| ! | TCTGAGCACCAGAGCTTTTA+CGG | - | chr8_1:43207114-43207133 | None:intergenic | 45.0% |
| ! | CATTTTCACAAAGTGCGGAG+TGG | + | chr8_1:43207323-43207342 | Msa1195340:three_prime_UTR | 45.0% |
| ATTACAGTAGAGAAACGCGG+GGG | - | chr8_1:43207687-43207706 | None:intergenic | 45.0% | |
| !!! | TTTTGATTATTAATTAATTA+AGG | - | chr8_1:43202312-43202331 | None:intergenic | 5.0% |
| !!! | TATAATTTTTTTAGATAATT+TGG | + | chr8_1:43204629-43204648 | Msa1195340:intron | 5.0% |
| GAATGTGAAATGGTCCGGTG+TGG | + | chr8_1:43203615-43203634 | Msa1195340:CDS | 50.0% | |
| GTTGTACTCTCCTTCCACAC+CGG | - | chr8_1:43203632-43203651 | None:intergenic | 50.0% | |
| TTTCTGCAGTCTACCTTGGC+AGG | + | chr8_1:43205330-43205349 | Msa1195340:intron | 50.0% | |
| TTCTGCAGTCTACCTTGGCA+GGG | + | chr8_1:43205331-43205350 | Msa1195340:intron | 50.0% | |
| ! | CTTTGCTAGTCTCTCTGTCG+TGG | + | chr8_1:43205512-43205531 | Msa1195340:intron | 50.0% |
| CGTGACCTATTCATCCGTGA+AGG | + | chr8_1:43205626-43205645 | Msa1195340:CDS | 50.0% | |
| ! | TGTTCTTGCCTTGTTGCTCC+AGG | + | chr8_1:43205809-43205828 | Msa1195340:intron | 50.0% |
| ACTGGAATCCTGGAGCAACA+AGG | - | chr8_1:43205820-43205839 | None:intergenic | 50.0% | |
| CTTACAATACCACGGGAAGG+AGG | - | chr8_1:43205899-43205918 | None:intergenic | 50.0% | |
| ! | GCAAATGCTGATGGACAGTC+AGG | + | chr8_1:43206051-43206070 | Msa1195340:CDS | 50.0% |
| ! | CTTTTCCACCACCTACACAG+AGG | - | chr8_1:43206246-43206265 | None:intergenic | 50.0% |
| AACTCAGTAGTATGGGTCCG+TGG | - | chr8_1:43206760-43206779 | None:intergenic | 50.0% | |
| TTCGGTCAAGTGGATCTGCA+AGG | + | chr8_1:43206993-43207012 | Msa1195340:CDS | 50.0% | |
| AGACTTGAATCCAGCGTGAG+AGG | - | chr8_1:43207082-43207101 | None:intergenic | 50.0% | |
| CTCACGCTGGATTCAAGTCT+AGG | + | chr8_1:43207082-43207101 | Msa1195340:CDS | 50.0% | |
| GAGCACAACCGAGTATCATC+TGG | + | chr8_1:43207157-43207176 | Msa1195340:CDS | 50.0% | |
| TTACAGTAGAGAAACGCGGG+GGG | - | chr8_1:43207686-43207705 | None:intergenic | 50.0% | |
| GTGAAATGGTCCGGTGTGGA+AGG | + | chr8_1:43203619-43203638 | Msa1195340:CDS | 55.0% | |
| CTTTGCGCAGGGAACTTTCC+TGG | + | chr8_1:43204371-43204390 | Msa1195340:intron | 55.0% | |
| CCTGCTTTCAATCCCTGCCA+AGG | - | chr8_1:43205346-43205365 | None:intergenic | 55.0% | |
| CCTTGGCAGGGATTGAAAGC+AGG | + | chr8_1:43205343-43205362 | Msa1195340:CDS | 55.0% | |
| AATACCACGGGAAGGAGGAG+TGG | - | chr8_1:43205894-43205913 | None:intergenic | 55.0% | |
| CACTTACAGGGTCTTGCTGC+TGG | + | chr8_1:43206000-43206019 | Msa1195340:intron | 55.0% | |
| ATGTGGTGCCTCTGTGTAGG+TGG | + | chr8_1:43206235-43206254 | Msa1195340:intron | 55.0% | |
| CTTCGTCTGATCCCACTCGA+AGG | + | chr8_1:43206287-43206306 | Msa1195340:CDS | 55.0% | |
| CCAGAGGTTCTCCTTCGAGT+GGG | - | chr8_1:43206301-43206320 | None:intergenic | 55.0% | |
| TCCAGAGGTTCTCCTTCGAG+TGG | - | chr8_1:43206302-43206321 | None:intergenic | 55.0% | |
| TGGAAGTGAAGCCCGGAGAA+GGG | - | chr8_1:43206740-43206759 | None:intergenic | 55.0% | |
| TTCTCCGGGCTTCACTTCCA+CGG | + | chr8_1:43206740-43206759 | Msa1195340:intron | 55.0% | |
| TCAAGTGGATCTGCAAGGCG+AGG | + | chr8_1:43206998-43207017 | Msa1195340:CDS | 55.0% | |
| CACTGCCAACAGCTGCATTG+CGG | - | chr8_1:43207039-43207058 | None:intergenic | 55.0% | |
| TGCAGCTGTTGGCAGTGAGA+CGG | + | chr8_1:43207042-43207061 | Msa1195340:CDS | 55.0% | |
| GGAGCAGTCCGTAAAAGCTC+TGG | + | chr8_1:43207103-43207122 | Msa1195340:CDS | 55.0% | |
| TCACAAAGTGCGGAGTGGAG+TGG | + | chr8_1:43207328-43207347 | Msa1195340:three_prime_UTR | 55.0% | |
| CACGCCTCCCTAAACCCATG+AGG | - | chr8_1:43203903-43203922 | None:intergenic | 60.0% | |
| CCAGAGAGAGGGAGAGAGTC+GGG | - | chr8_1:43204882-43204901 | None:intergenic | 60.0% | |
| CCCAGAGAGAGGGAGAGAGT+CGG | - | chr8_1:43204883-43204902 | None:intergenic | 60.0% | |
| CCGACTCTCTCCCTCTCTCT+GGG | + | chr8_1:43204880-43204899 | Msa1195340:intron | 60.0% | |
| CGACTCTCTCCCTCTCTCTG+GGG | + | chr8_1:43204881-43204900 | Msa1195340:intron | 60.0% | |
| CTTGCTGCTGGACCGAGTTC+TGG | + | chr8_1:43206012-43206031 | Msa1195340:CDS | 60.0% | |
| GCTAGCGGCAGACCAGAACT+CGG | - | chr8_1:43206027-43206046 | None:intergenic | 60.0% | |
| TGGTGCCTCTGTGTAGGTGG+TGG | + | chr8_1:43206238-43206257 | Msa1195340:intron | 60.0% | |
| CCCACTCGAAGGAGAACCTC+TGG | + | chr8_1:43206298-43206317 | Msa1195340:CDS | 60.0% | |
| GGAAGTGAAGCCCGGAGAAG+GGG | - | chr8_1:43206739-43206758 | None:intergenic | 60.0% | |
| GTGGAAGTGAAGCCCGGAGA+AGG | - | chr8_1:43206741-43206760 | None:intergenic | 60.0% | |
| AGCAGCCGCAATGCAGCTGT+TGG | + | chr8_1:43207031-43207050 | Msa1195340:CDS | 60.0% | |
| AGCGTGAGAGGACGAGAGGA+GGG | - | chr8_1:43207070-43207089 | None:intergenic | 60.0% | |
| ATCCAGCGTGAGAGGACGAG+AGG | - | chr8_1:43207074-43207093 | None:intergenic | 60.0% | |
| CCCGACTCTCTCCCTCTCTC+TGG | + | chr8_1:43204879-43204898 | Msa1195340:intron | 65.0% | |
| ATCGCCACTCCTCCTTCCCG+TGG | + | chr8_1:43205887-43205906 | Msa1195340:CDS | 65.0% | |
| GGGTCCGTGGAAGTGAAGCC+CGG | - | chr8_1:43206747-43206766 | None:intergenic | 65.0% | |
| CAGCGTGAGAGGACGAGAGG+AGG | - | chr8_1:43207071-43207090 | None:intergenic | 65.0% | |
| CTCCTCTCGTCCTCTCACGC+TGG | + | chr8_1:43207069-43207088 | Msa1195340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 43202273 | 43207994 | 43202273 | ID=Msa1195340;Name=Msa1195340 |
| chr8_1 | mRNA | 43202273 | 43207994 | 43202273 | ID=Msa1195340-mRNA-1;Parent=Msa1195340;Name=Msa1195340-mRNA-1;_AED=0.12;_eAED=0.12;_QI=284|0.85|0.8|1|1|1|15|727|479 |
| chr8_1 | exon | 43202273 | 43202632 | 43202273 | ID=Msa1195340-mRNA-1:exon:13976;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43202719 | 43202759 | 43202719 | ID=Msa1195340-mRNA-1:exon:13977;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43203424 | 43203493 | 43203424 | ID=Msa1195340-mRNA-1:exon:13978;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43203605 | 43203780 | 43203605 | ID=Msa1195340-mRNA-1:exon:13979;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43203835 | 43203930 | 43203835 | ID=Msa1195340-mRNA-1:exon:13980;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43204029 | 43204096 | 43204029 | ID=Msa1195340-mRNA-1:exon:13981;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43205045 | 43205106 | 43205045 | ID=Msa1195340-mRNA-1:exon:13982;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43205194 | 43205239 | 43205194 | ID=Msa1195340-mRNA-1:exon:13983;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43205252 | 43205257 | 43205252 | ID=Msa1195340-mRNA-1:exon:13984;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43205339 | 43205423 | 43205339 | ID=Msa1195340-mRNA-1:exon:13985;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43205521 | 43205647 | 43205521 | ID=Msa1195340-mRNA-1:exon:13986;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43205831 | 43205913 | 43205831 | ID=Msa1195340-mRNA-1:exon:13987;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43206009 | 43206072 | 43206009 | ID=Msa1195340-mRNA-1:exon:13988;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43206254 | 43206399 | 43206254 | ID=Msa1195340-mRNA-1:exon:13989;Parent=Msa1195340-mRNA-1 |
| chr8_1 | exon | 43206974 | 43207994 | 43206974 | ID=Msa1195340-mRNA-1:exon:13990;Parent=Msa1195340-mRNA-1 |
| chr8_1 | five_prime_UTR | 43202273 | 43202556 | 43202273 | ID=Msa1195340-mRNA-1:five_prime_utr;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43202557 | 43202632 | 43202557 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43202719 | 43202759 | 43202719 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43203424 | 43203493 | 43203424 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43203605 | 43203780 | 43203605 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43203835 | 43203930 | 43203835 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43204029 | 43204096 | 43204029 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43205045 | 43205106 | 43205045 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43205194 | 43205239 | 43205194 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43205252 | 43205257 | 43205252 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43205339 | 43205423 | 43205339 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43205521 | 43205647 | 43205521 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43205831 | 43205913 | 43205831 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43206009 | 43206072 | 43206009 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43206254 | 43206399 | 43206254 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | CDS | 43206974 | 43207267 | 43206974 | ID=Msa1195340-mRNA-1:cds;Parent=Msa1195340-mRNA-1 |
| chr8_1 | three_prime_UTR | 43207268 | 43207994 | 43207268 | ID=Msa1195340-mRNA-1:three_prime_utr;Parent=Msa1195340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
