Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199820 | XP_024628495.1 | 97.181 | 603 | 16 | 1 | 1 | 603 | 1 | 602 | 0.0 | 1221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199820 | sp|Q501H5|SFH13_ARATH | 57.524 | 638 | 223 | 18 | 1 | 603 | 1 | 625 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0681260 | Msa1199820 | 0.801609 | 8.307506e-49 | -8.615850e-47 |
| Msa0681280 | Msa1199820 | 0.800034 | 1.741234e-48 | -8.615850e-47 |
| Msa0136650 | Msa1199820 | 0.808416 | 3.130990e-50 | -8.615850e-47 |
| Msa0430260 | Msa1199820 | 0.803896 | 2.801468e-49 | -8.615850e-47 |
| Msa0981320 | Msa1199820 | 0.806684 | 7.298785e-50 | -8.615850e-47 |
| Msa1080000 | Msa1199820 | 0.821223 | 4.525814e-53 | -8.615850e-47 |
| Msa0301820 | Msa1199820 | 0.813417 | 2.586952e-51 | -8.615850e-47 |
| Msa1174840 | Msa1199820 | 0.806944 | 6.432494e-50 | -8.615850e-47 |
| Msa1199820 | Msa1252980 | 0.901710 | 2.034051e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199820 | MtrunA17_Chr8g0369291 | 97.181 | 603 | 16 | 1 | 1 | 603 | 1 | 602 | 0.0 | 1221 |
| Msa1199820 | MtrunA17_Chr3g0080051 | 65.282 | 602 | 193 | 8 | 14 | 603 | 21 | 618 | 0.0 | 757 |
| Msa1199820 | MtrunA17_Chr1g0155521 | 43.954 | 612 | 299 | 14 | 14 | 603 | 31 | 620 | 1.61e-157 | 465 |
| Msa1199820 | MtrunA17_Chr4g0035391 | 41.639 | 598 | 301 | 14 | 29 | 603 | 43 | 615 | 9.34e-142 | 424 |
| Msa1199820 | MtrunA17_Chr3g0144911 | 54.103 | 390 | 169 | 5 | 14 | 396 | 30 | 416 | 1.58e-140 | 415 |
| Msa1199820 | MtrunA17_Chr7g0236461 | 42.414 | 580 | 277 | 12 | 34 | 595 | 39 | 579 | 2.13e-139 | 418 |
| Msa1199820 | MtrunA17_Chr3g0141821 | 42.978 | 591 | 296 | 11 | 14 | 597 | 13 | 569 | 3.10e-135 | 406 |
| Msa1199820 | MtrunA17_Chr5g0404711 | 49.072 | 377 | 178 | 7 | 29 | 399 | 12 | 380 | 1.04e-119 | 363 |
| Msa1199820 | MtrunA17_Chr3g0144891 | 38.061 | 557 | 297 | 12 | 33 | 584 | 37 | 550 | 1.02e-113 | 351 |
| Msa1199820 | MtrunA17_Chr8g0372651 | 58.451 | 284 | 114 | 2 | 59 | 339 | 45 | 327 | 2.02e-108 | 337 |
| Msa1199820 | MtrunA17_Chr4g0035361 | 40.519 | 501 | 243 | 13 | 91 | 584 | 2 | 454 | 7.67e-106 | 327 |
| Msa1199820 | MtrunA17_Chr5g0399151 | 46.732 | 306 | 157 | 4 | 30 | 332 | 54 | 356 | 4.00e-89 | 283 |
| Msa1199820 | MtrunA17_Chr4g0035381 | 51.626 | 246 | 118 | 1 | 81 | 326 | 75 | 319 | 9.61e-87 | 275 |
| Msa1199820 | MtrunA17_Chr4g0076441 | 27.817 | 284 | 173 | 8 | 85 | 359 | 26 | 286 | 8.24e-19 | 88.2 |
| Msa1199820 | MtrunA17_Chr3g0102691 | 29.630 | 270 | 161 | 9 | 85 | 346 | 26 | 274 | 1.26e-17 | 84.7 |
| Msa1199820 | MtrunA17_Chr2g0290661 | 31.944 | 216 | 128 | 6 | 90 | 298 | 38 | 241 | 3.54e-17 | 83.2 |
| Msa1199820 | MtrunA17_Chr3g0131581 | 28.520 | 277 | 167 | 11 | 35 | 303 | 11 | 264 | 4.19e-16 | 79.0 |
| Msa1199820 | MtrunA17_Chr4g0004981 | 27.727 | 220 | 135 | 10 | 91 | 301 | 126 | 330 | 8.81e-12 | 67.8 |
| Msa1199820 | MtrunA17_Chr1g0161441 | 26.316 | 247 | 158 | 10 | 64 | 304 | 3 | 231 | 1.18e-11 | 65.5 |
| Msa1199820 | MtrunA17_Chr1g0155071 | 25.896 | 251 | 157 | 9 | 60 | 301 | 9 | 239 | 1.75e-11 | 65.5 |
| Msa1199820 | MtrunA17_Chr8g0385291 | 29.185 | 233 | 132 | 11 | 91 | 310 | 182 | 394 | 2.15e-11 | 66.6 |
| Msa1199820 | MtrunA17_Chr8g0385681 | 29.224 | 219 | 123 | 9 | 93 | 304 | 55 | 248 | 8.20e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199820 | AT1G55690.2 | 57.524 | 638 | 223 | 18 | 1 | 603 | 1 | 625 | 0.0 | 653 |
| Msa1199820 | AT1G55690.4 | 57.524 | 638 | 223 | 18 | 1 | 603 | 1 | 625 | 0.0 | 653 |
| Msa1199820 | AT1G55690.1 | 57.524 | 638 | 223 | 18 | 1 | 603 | 1 | 625 | 0.0 | 653 |
| Msa1199820 | AT1G55690.5 | 57.524 | 638 | 223 | 18 | 1 | 603 | 1 | 625 | 0.0 | 653 |
| Msa1199820 | AT1G55690.3 | 57.188 | 633 | 224 | 17 | 1 | 599 | 1 | 620 | 0.0 | 643 |
| Msa1199820 | AT5G56160.1 | 47.658 | 619 | 264 | 10 | 1 | 603 | 1 | 575 | 0.0 | 543 |
| Msa1199820 | AT5G56160.3 | 47.658 | 619 | 264 | 10 | 1 | 603 | 1 | 575 | 0.0 | 543 |
| Msa1199820 | AT5G56160.2 | 65.205 | 342 | 115 | 2 | 1 | 338 | 1 | 342 | 2.81e-162 | 473 |
| Msa1199820 | AT4G39170.1 | 43.328 | 607 | 304 | 13 | 14 | 603 | 30 | 613 | 5.48e-157 | 464 |
| Msa1199820 | AT4G39170.2 | 43.328 | 607 | 302 | 14 | 14 | 603 | 30 | 611 | 3.21e-155 | 459 |
| Msa1199820 | AT3G24840.7 | 45.315 | 587 | 266 | 17 | 14 | 594 | 23 | 560 | 9.17e-152 | 449 |
| Msa1199820 | AT3G24840.3 | 45.315 | 587 | 266 | 17 | 14 | 594 | 23 | 560 | 9.17e-152 | 449 |
| Msa1199820 | AT3G24840.5 | 45.315 | 587 | 266 | 17 | 14 | 594 | 23 | 560 | 9.17e-152 | 449 |
| Msa1199820 | AT2G21520.1 | 41.558 | 616 | 321 | 11 | 14 | 603 | 30 | 632 | 2.75e-151 | 450 |
| Msa1199820 | AT2G21520.2 | 41.558 | 616 | 321 | 11 | 14 | 603 | 34 | 636 | 2.98e-151 | 450 |
| Msa1199820 | AT2G21520.3 | 41.558 | 616 | 321 | 11 | 14 | 603 | 34 | 636 | 2.98e-151 | 450 |
| Msa1199820 | AT3G24840.1 | 45.145 | 587 | 266 | 17 | 14 | 594 | 23 | 559 | 7.41e-151 | 447 |
| Msa1199820 | AT3G24840.6 | 45.145 | 587 | 266 | 17 | 14 | 594 | 23 | 559 | 7.41e-151 | 447 |
| Msa1199820 | AT3G24840.4 | 45.145 | 587 | 266 | 17 | 14 | 594 | 23 | 559 | 7.41e-151 | 447 |
| Msa1199820 | AT3G24840.2 | 45.145 | 587 | 266 | 17 | 14 | 594 | 23 | 559 | 7.41e-151 | 447 |
| Msa1199820 | AT1G19650.1 | 40.555 | 577 | 311 | 11 | 40 | 603 | 50 | 607 | 2.36e-126 | 385 |
| Msa1199820 | AT4G39180.3 | 51.667 | 360 | 158 | 6 | 11 | 357 | 15 | 371 | 2.94e-125 | 380 |
| Msa1199820 | AT4G39180.2 | 51.667 | 360 | 158 | 6 | 11 | 357 | 15 | 371 | 2.94e-125 | 380 |
| Msa1199820 | AT2G21540.6 | 54.094 | 342 | 147 | 6 | 11 | 348 | 15 | 350 | 3.23e-125 | 380 |
| Msa1199820 | AT2G21540.2 | 54.094 | 342 | 147 | 6 | 11 | 348 | 15 | 350 | 3.23e-125 | 380 |
| Msa1199820 | AT2G21540.1 | 54.094 | 342 | 147 | 6 | 11 | 348 | 15 | 350 | 3.23e-125 | 380 |
| Msa1199820 | AT2G21540.4 | 54.094 | 342 | 147 | 6 | 11 | 348 | 15 | 350 | 3.23e-125 | 380 |
| Msa1199820 | AT4G39180.1 | 54.192 | 334 | 146 | 5 | 11 | 340 | 15 | 345 | 3.27e-125 | 380 |
| Msa1199820 | AT2G21540.3 | 54.094 | 342 | 147 | 6 | 11 | 348 | 15 | 350 | 3.97e-125 | 380 |
| Msa1199820 | AT2G21540.5 | 54.094 | 342 | 147 | 6 | 11 | 348 | 15 | 350 | 3.97e-125 | 380 |
| Msa1199820 | AT4G34580.2 | 55.352 | 327 | 138 | 5 | 12 | 333 | 7 | 330 | 4.51e-124 | 377 |
| Msa1199820 | AT4G34580.1 | 55.352 | 327 | 138 | 5 | 12 | 333 | 7 | 330 | 4.51e-124 | 377 |
| Msa1199820 | AT2G18180.2 | 54.952 | 313 | 134 | 3 | 21 | 330 | 12 | 320 | 2.75e-119 | 365 |
| Msa1199820 | AT2G18180.1 | 54.952 | 313 | 134 | 3 | 21 | 330 | 12 | 320 | 3.10e-119 | 365 |
| Msa1199820 | AT1G75370.1 | 38.927 | 578 | 313 | 12 | 42 | 603 | 58 | 611 | 4.64e-118 | 364 |
| Msa1199820 | AT4G36490.1 | 54.984 | 311 | 134 | 3 | 23 | 330 | 10 | 317 | 5.31e-118 | 361 |
| Msa1199820 | AT1G19650.3 | 51.253 | 359 | 167 | 5 | 40 | 393 | 50 | 405 | 2.56e-117 | 356 |
| Msa1199820 | AT1G75370.2 | 39.243 | 581 | 310 | 13 | 42 | 603 | 58 | 614 | 3.49e-117 | 363 |
| Msa1199820 | AT2G16380.2 | 53.988 | 326 | 144 | 4 | 14 | 335 | 9 | 332 | 1.50e-116 | 358 |
| Msa1199820 | AT2G16380.1 | 53.988 | 326 | 144 | 4 | 14 | 335 | 9 | 332 | 1.50e-116 | 358 |
| Msa1199820 | AT1G19650.2 | 40.114 | 526 | 290 | 10 | 85 | 603 | 28 | 535 | 7.39e-116 | 355 |
| Msa1199820 | AT2G18180.4 | 61.826 | 241 | 91 | 1 | 90 | 330 | 10 | 249 | 1.21e-109 | 337 |
| Msa1199820 | AT2G18180.3 | 61.826 | 241 | 91 | 1 | 90 | 330 | 10 | 249 | 1.94e-109 | 337 |
| Msa1199820 | AT2G18180.5 | 61.883 | 223 | 84 | 1 | 108 | 330 | 1 | 222 | 4.88e-101 | 314 |
| Msa1199820 | AT2G16380.3 | 59.649 | 228 | 91 | 1 | 108 | 335 | 1 | 227 | 5.94e-97 | 303 |
| Msa1199820 | AT5G47510.2 | 49.627 | 268 | 131 | 2 | 60 | 324 | 18 | 284 | 3.43e-90 | 283 |
| Msa1199820 | AT5G47510.1 | 49.627 | 268 | 131 | 2 | 60 | 324 | 17 | 283 | 9.23e-90 | 283 |
| Msa1199820 | AT5G47510.4 | 49.627 | 268 | 131 | 2 | 60 | 324 | 18 | 284 | 9.41e-90 | 283 |
| Msa1199820 | AT5G47510.3 | 52.423 | 227 | 107 | 1 | 98 | 324 | 2 | 227 | 1.02e-82 | 262 |
| Msa1199820 | AT1G55840.1 | 31.646 | 237 | 147 | 6 | 85 | 317 | 31 | 256 | 6.38e-19 | 88.6 |
| Msa1199820 | AT1G55840.2 | 31.646 | 237 | 147 | 6 | 85 | 317 | 4 | 229 | 9.49e-19 | 87.8 |
| Msa1199820 | AT5G47730.4 | 30.233 | 215 | 131 | 5 | 91 | 298 | 39 | 241 | 5.39e-16 | 80.1 |
| Msa1199820 | AT5G47730.1 | 30.233 | 215 | 131 | 5 | 91 | 298 | 39 | 241 | 5.39e-16 | 80.1 |
Find 139 sgRNAs with CRISPR-Local
Find 334 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGTTTAGGATTAGAATTT+TGG | 0.179579 | 8_1:-52080381 | Msa1199820:CDS |
| CTAAATGCAAGCTCATTTAT+TGG | 0.191638 | 8_1:-52079592 | Msa1199820:three_prime_UTR |
| GCCATTGCAAAATGATGATA+TGG | 0.233525 | 8_1:-52080858 | Msa1199820:CDS |
| ACTTGACGCATATAAGAAAT+TGG | 0.251963 | 8_1:+52080444 | None:intergenic |
| GTTCTTTGGAGGAAACAATT+TGG | 0.252962 | 8_1:-52084180 | Msa1199820:CDS |
| ACTAAGTTTCCTTTGTCTAA+TGG | 0.270733 | 8_1:+52081120 | None:intergenic |
| GGAAAAGCAAAATTGATTAT+AGG | 0.271718 | 8_1:-52084457 | Msa1199820:CDS |
| CAGGCACTTCGATCAGAAAT+TGG | 0.276437 | 8_1:-52080498 | Msa1199820:CDS |
| AAGTGTGCTGATATATCTTT+TGG | 0.288321 | 8_1:-52080425 | Msa1199820:CDS |
| AACATTACCTTCATTATATT+AGG | 0.291864 | 8_1:+52081633 | None:intergenic |
| GAAAATGCTTATGAGCTCTT+TGG | 0.319819 | 8_1:-52080185 | Msa1199820:CDS |
| CTGTATCTTTGCGATAGTTT+TGG | 0.320908 | 8_1:+52082064 | None:intergenic |
| AATGGTCCTCTATTTAGATT+TGG | 0.325560 | 8_1:-52079392 | Msa1199820:three_prime_UTR |
| CATTCAGATGTGGGAAGATA+TGG | 0.333166 | 8_1:-52084202 | Msa1199820:CDS |
| TCAATGCTGGTCCTGGCTTT+AGG | 0.333637 | 8_1:-52082124 | Msa1199820:CDS |
| GATATGCTCTTCCACAGTTT+AGG | 0.360724 | 8_1:-52080394 | Msa1199820:CDS |
| TGTGGGAAGATATGGTTCTT+TGG | 0.374248 | 8_1:-52084194 | Msa1199820:CDS |
| CCAAGCCTCTCAATGTAAAC+TGG | 0.379238 | 8_1:+52082575 | None:intergenic |
| GAAACTTAGTAATCCTCGTT+TGG | 0.382318 | 8_1:-52081107 | Msa1199820:CDS |
| AGCTGTAAAGATAATGCTTC+TGG | 0.386054 | 8_1:-52080929 | Msa1199820:CDS |
| CTGGCTTTAGGAAGATGCTT+TGG | 0.391128 | 8_1:-52082112 | Msa1199820:CDS |
| TAGGTATTTCCGCCGGTCTA+TGG | 0.392022 | 8_1:+52080218 | None:intergenic |
| TCATTAATCATTACTATGTC+AGG | 0.395677 | 8_1:-52084714 | Msa1199820:intron |
| TTAGTAAGAGCGAGATTTGA+AGG | 0.396950 | 8_1:+52079444 | None:intergenic |
| TTTGTAGTTGTGTTTGAAAA+TGG | 0.401093 | 8_1:+52081446 | None:intergenic |
| GTAGTGGAGAGTGGAGAGAA+GGG | 0.411847 | 8_1:+52084843 | None:intergenic |
| TCATCTCTATCATCTTCAAT+TGG | 0.419200 | 8_1:+52084431 | None:intergenic |
| TGTAATTTAAATAAAGACTT+TGG | 0.426001 | 8_1:+52081844 | None:intergenic |
| GCCTACTGCTGCCAATCTCT+TGG | 0.426130 | 8_1:-52082290 | Msa1199820:CDS |
| AAATTGGTTCGGCTTTGTTA+AGG | 0.430507 | 8_1:-52080482 | Msa1199820:CDS |
| CCAGTTTACATTGAGAGGCT+TGG | 0.438181 | 8_1:-52082575 | Msa1199820:CDS |
| AAACACTAAATTACAAAGGA+TGG | 0.449467 | 8_1:-52079327 | Msa1199820:three_prime_UTR |
| AGTTTCCTTTGTCTAATGGA+TGG | 0.453115 | 8_1:+52081124 | None:intergenic |
| AGAGAAACATAGGTATGAAA+TGG | 0.454060 | 8_1:-52079410 | Msa1199820:three_prime_UTR |
| GTAGAGCTCTCTCGAACTCC+TGG | 0.454796 | 8_1:+52082489 | None:intergenic |
| GTTGTTCATTGGAAACTTTG+AGG | 0.455809 | 8_1:+52081479 | None:intergenic |
| TGTAGTGGAGAGTGGAGAGA+AGG | 0.459599 | 8_1:+52084842 | None:intergenic |
| TGGATGTCTTAGATCAAGTA+AGG | 0.460310 | 8_1:-52081670 | Msa1199820:CDS |
| CAAAACTATCGCAAAGATAC+AGG | 0.460862 | 8_1:-52082063 | Msa1199820:intron |
| TCATTTATTGGACCCACAAA+AGG | 0.462330 | 8_1:-52079580 | Msa1199820:three_prime_UTR |
| TAGTAAGAGCGAGATTTGAA+GGG | 0.474837 | 8_1:+52079445 | None:intergenic |
| TGTGATAGCAGCCAAGAGAT+TGG | 0.475570 | 8_1:+52082279 | None:intergenic |
| AGGTTATCATGGAGTTGATA+AGG | 0.479015 | 8_1:-52082606 | Msa1199820:CDS |
| TATTACCCTCAAGGTTATCA+TGG | 0.482317 | 8_1:-52082617 | Msa1199820:CDS |
| ATATGTCAACAGCAGAATCT+TGG | 0.484810 | 8_1:-52081168 | Msa1199820:CDS |
| TATATCGTCAATGCTGGTCC+TGG | 0.487761 | 8_1:-52082131 | Msa1199820:CDS |
| GTGTGATAATGATCATGATT+AGG | 0.489636 | 8_1:+52084356 | None:intergenic |
| CAAAGCATCTTCCTAAAGCC+AGG | 0.490122 | 8_1:+52082113 | None:intergenic |
| GCCGACCAGTTTACATTGAG+AGG | 0.495905 | 8_1:-52082580 | Msa1199820:CDS |
| TCAAGAAACTTCTGAGCAGC+AGG | 0.496593 | 8_1:+52082089 | None:intergenic |
| GTTTCCTTTGTCTAATGGAT+GGG | 0.500173 | 8_1:+52081125 | None:intergenic |
| ACTTCGATCAGAAATTGGTT+CGG | 0.501529 | 8_1:-52080493 | Msa1199820:CDS |
| CCATTGCAAAATGATGATAT+GGG | 0.501678 | 8_1:-52080857 | Msa1199820:CDS |
| GGCGGAAATACCTATGGAAA+AGG | 0.503354 | 8_1:-52080209 | Msa1199820:CDS |
| CAACTCCATGATAACCTTGA+GGG | 0.508319 | 8_1:+52082612 | None:intergenic |
| CTAAGACATCCACCTTCTCC+AGG | 0.511880 | 8_1:+52081681 | None:intergenic |
| AATATTAGATGTACATGGCT+TGG | 0.512053 | 8_1:-52082408 | Msa1199820:intron |
| AAGCATTATCTTTACAGCTA+CGG | 0.514810 | 8_1:+52080933 | None:intergenic |
| TGAAGACGTTCTTGTATACA+TGG | 0.518346 | 8_1:+52080271 | None:intergenic |
| CACTGTCCAAATCTAAATAG+AGG | 0.525238 | 8_1:+52079386 | None:intergenic |
| CATATCTTCCCACATCTGAA+TGG | 0.525456 | 8_1:+52084203 | None:intergenic |
| AGTATAGAGAATAACCCTCT+TGG | 0.533030 | 8_1:+52080126 | None:intergenic |
| GAATGATCCTAATATAATGA+AGG | 0.534117 | 8_1:-52081640 | Msa1199820:intron |
| AGATCAATTTCAATTTACTC+AGG | 0.536555 | 8_1:-52080885 | Msa1199820:CDS |
| TTAGATCAAGTAAGGGTCCA+TGG | 0.537543 | 8_1:-52081662 | Msa1199820:CDS |
| TTTGGGGTGGAAGGACTAGC+CGG | 0.538584 | 8_1:+52079234 | None:intergenic |
| AATCCATCGCTTTGATGCAA+TGG | 0.539148 | 8_1:+52082445 | None:intergenic |
| CAAATGTATATCGTCAATGC+TGG | 0.541743 | 8_1:-52082137 | Msa1199820:CDS |
| AACACTAAATTACAAAGGAT+GGG | 0.543472 | 8_1:-52079326 | Msa1199820:three_prime_UTR |
| AGTAAGAGCGAGATTTGAAG+GGG | 0.547056 | 8_1:+52079446 | None:intergenic |
| GGGAAGATATGGTTCTTTGG+AGG | 0.550950 | 8_1:-52084191 | Msa1199820:CDS |
| TGCTTATGAGCTCTTTGGAT+AGG | 0.551453 | 8_1:-52080180 | Msa1199820:CDS |
| AGATGATAGAGATGAACAAG+AGG | 0.552908 | 8_1:-52084423 | Msa1199820:CDS |
| GGTGGCTCGTGTAAATGTCC+TGG | 0.553097 | 8_1:-52081699 | Msa1199820:CDS |
| TGTCAAAACACCTTCTGAAG+AGG | 0.553214 | 8_1:-52080305 | Msa1199820:CDS |
| TAAGAAGGTCAAGAATAAGA+AGG | 0.555650 | 8_1:-52084541 | Msa1199820:CDS |
| ACCACATTATGACAAAATCA+AGG | 0.557940 | 8_1:-52079283 | Msa1199820:three_prime_UTR |
| TGAGTAGTTGTTATCACCAC+AGG | 0.558230 | 8_1:-52079623 | Msa1199820:three_prime_UTR |
| TGTGGAACTTAGCCATAGAC+CGG | 0.561162 | 8_1:-52080230 | Msa1199820:CDS |
| CAGAAGAAGAGAGATTAAGA+AGG | 0.562345 | 8_1:-52084556 | Msa1199820:CDS |
| ATTATATTAGGATCATTCCA+TGG | 0.564352 | 8_1:+52081645 | None:intergenic |
| TAGACCGGCGGAAATACCTA+TGG | 0.565565 | 8_1:-52080215 | Msa1199820:CDS |
| CTCTCTCGAACTCCTGGACA+TGG | 0.567372 | 8_1:+52082495 | None:intergenic |
| CCATAGAGAAAACATAGGGA+TGG | 0.571456 | 8_1:-52079514 | Msa1199820:three_prime_UTR |
| TCATTTACATAGAGAAACAT+AGG | 0.573084 | 8_1:-52079420 | Msa1199820:three_prime_UTR |
| GCATTTAGTATTGTCTCCTG+TGG | 0.574944 | 8_1:+52079607 | None:intergenic |
| ATATTTAAAATACCATGTCC+AGG | 0.575974 | 8_1:-52082507 | Msa1199820:CDS |
| GCCTCTCAATGTAAACTGGT+CGG | 0.576699 | 8_1:+52082579 | None:intergenic |
| AACAAAGATGTTGTGTTGTG+TGG | 0.577161 | 8_1:+52084804 | None:intergenic |
| TCTGTCCATAGAGAAAACAT+AGG | 0.579494 | 8_1:-52079519 | Msa1199820:three_prime_UTR |
| GCTCCATTGCATCAAAGCGA+TGG | 0.582925 | 8_1:-52082448 | Msa1199820:CDS |
| TTGAGAAGACCATTCAGATG+TGG | 0.587288 | 8_1:-52084212 | Msa1199820:CDS |
| CTTGATGCGCATAACCACAA+TGG | 0.587615 | 8_1:-52082534 | Msa1199820:CDS |
| CTGTCCATAGAGAAAACATA+GGG | 0.587810 | 8_1:-52079518 | Msa1199820:three_prime_UTR |
| TGAGATACTGTAGTGGAGAG+TGG | 0.589168 | 8_1:+52084834 | None:intergenic |
| ATTGGACCCACAAAAGGCTG+AGG | 0.592411 | 8_1:-52079574 | Msa1199820:three_prime_UTR |
| CATTCTCTCAAGAAAACAAG+AGG | 0.592966 | 8_1:-52084479 | Msa1199820:CDS |
| TTAGTTTGTTCATAATGTGG+AGG | 0.594499 | 8_1:-52081521 | Msa1199820:intron |
| CATAGAGAAAACATAGGGAT+GGG | 0.594853 | 8_1:-52079513 | Msa1199820:three_prime_UTR |
| GTATTGCAATATTACCCTCA+AGG | 0.595104 | 8_1:-52082626 | Msa1199820:CDS |
| TAGATTTGGACAGTGTGGAG+AGG | 0.597314 | 8_1:-52079378 | Msa1199820:three_prime_UTR |
| CTATTTAGATTTGGACAGTG+TGG | 0.598345 | 8_1:-52079383 | Msa1199820:three_prime_UTR |
| TGAGAAGACCATTCAGATGT+GGG | 0.599172 | 8_1:-52084211 | Msa1199820:CDS |
| GAGAAACCTTACCTTGAGGA+TGG | 0.600349 | 8_1:+52084149 | None:intergenic |
| CTTGCCCATCCATTAGACAA+AGG | 0.602311 | 8_1:-52081129 | Msa1199820:CDS |
| GAGAACACAGAACAATATTG+TGG | 0.605661 | 8_1:-52080359 | Msa1199820:CDS |
| ATCATTATCACACACTCTTG+AGG | 0.610477 | 8_1:-52084346 | Msa1199820:intron |
| TTTGATGCAATGGAGCATGC+TGG | 0.613304 | 8_1:+52082455 | None:intergenic |
| ACCCACAAAAGGCTGAGGCA+AGG | 0.617538 | 8_1:-52079569 | Msa1199820:three_prime_UTR |
| TCAACTCCATGATAACCTTG+AGG | 0.626407 | 8_1:+52082611 | None:intergenic |
| TGGAACTGATACCATCCTCA+AGG | 0.627272 | 8_1:-52084160 | Msa1199820:intron |
| TGTAAATGTCCTGGAGAAGG+TGG | 0.627369 | 8_1:-52081690 | Msa1199820:CDS |
| ATGTACATCTAATATTGTTG+TGG | 0.630684 | 8_1:+52082415 | None:intergenic |
| CGACCTTGAAAATACCAAGA+GGG | 0.632338 | 8_1:-52080140 | Msa1199820:intron |
| GTTATGCGCATCAAGCGGCT+AGG | 0.632760 | 8_1:+52082542 | None:intergenic |
| AGAATACGATCCTCTTCAGA+AGG | 0.634299 | 8_1:+52080295 | None:intergenic |
| TACACGATATCATCGACTCT+AGG | 0.636683 | 8_1:-52081825 | Msa1199820:intron |
| AAAATTCTAATCCTAAACTG+TGG | 0.639752 | 8_1:+52080383 | None:intergenic |
| AAACAAACACTAAATTACAA+AGG | 0.639956 | 8_1:-52079331 | Msa1199820:three_prime_UTR |
| TATCATGGAGTTGATAAGGA+AGG | 0.642212 | 8_1:-52082602 | Msa1199820:CDS |
| TCGTGTAAATGTCCTGGAGA+AGG | 0.642895 | 8_1:-52081693 | Msa1199820:CDS |
| TTGTGGTTATGCGCATCAAG+CGG | 0.644616 | 8_1:+52082537 | None:intergenic |
| AACACAGAACAATATTGTGG+TGG | 0.644913 | 8_1:-52080356 | Msa1199820:CDS |
| TGATAATGATCATGATTAGG+AGG | 0.646729 | 8_1:+52084359 | None:intergenic |
| ACAACAATATTAGATGTACA+TGG | 0.648869 | 8_1:-52082413 | Msa1199820:CDS |
| ATTCTCTCAAGAAAACAAGA+GGG | 0.654597 | 8_1:-52084478 | Msa1199820:CDS |
| GCCAAGAGATTGGCAGCAGT+AGG | 0.654613 | 8_1:+52082289 | None:intergenic |
| CATTGCAAAATGATGATATG+GGG | 0.660842 | 8_1:-52080856 | Msa1199820:CDS |
| TGATCAACTGAGGCCAAACG+AGG | 0.665772 | 8_1:+52081094 | None:intergenic |
| CACTTCTTCATGATCAACTG+AGG | 0.666648 | 8_1:+52081084 | None:intergenic |
| ATCTCACTGAGATACTGTAG+TGG | 0.667356 | 8_1:+52084827 | None:intergenic |
| GGATGTCTTAGATCAAGTAA+GGG | 0.672342 | 8_1:-52081669 | Msa1199820:CDS |
| ACTTGTACAGAGAATTCCAA+AGG | 0.675982 | 8_1:-52080827 | Msa1199820:intron |
| GGCTGAGGCAAGGAATGACA+CGG | 0.676742 | 8_1:-52079559 | Msa1199820:three_prime_UTR |
| TGAGCTACTAGAGAATCTGA+AGG | 0.697572 | 8_1:-52079996 | Msa1199820:CDS |
| ATGTTGTAAAATGAAAATGT+CGG | 0.713873 | 8_1:+52084741 | None:intergenic |
| TCGACCTTGAAAATACCAAG+AGG | 0.727189 | 8_1:-52080141 | Msa1199820:CDS |
| AGATAACAGTTACTACCCCG+AGG | 0.730209 | 8_1:-52082251 | Msa1199820:intron |
| GGAACTTAGCCATAGACCGG+CGG | 0.738146 | 8_1:-52080227 | Msa1199820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAAACATATTTTATTTA+TGG | - | chr8_1:52080185-52080204 | Msa1199820:CDS | 10.0% |
| !!! | TGAAAACATATTTTATTTAT+GGG | - | chr8_1:52080186-52080205 | Msa1199820:CDS | 10.0% |
| !! | TTTGTCAATTAATAAATAAA+GGG | + | chr8_1:52080380-52080399 | None:intergenic | 10.0% |
| !!! | TTTTGTCAATTAATAAATAA+AGG | + | chr8_1:52080381-52080400 | None:intergenic | 10.0% |
| !!! | GATAAATTAATTGTATTTTA+TGG | + | chr8_1:52080705-52080724 | None:intergenic | 10.0% |
| !!! | TATATATTATAACTTTTTGT+TGG | - | chr8_1:52082071-52082090 | Msa1199820:CDS | 10.0% |
| !!! | TTTTTCAATAATCTTAATTT+GGG | - | chr8_1:52083334-52083353 | Msa1199820:intron | 10.0% |
| !! | TAATAAATAGTACTTATATT+CGG | + | chr8_1:52084232-52084251 | None:intergenic | 10.0% |
| !! | GTGAAATTTATATATATTTA+CGG | - | chr8_1:52084368-52084387 | Msa1199820:CDS | 10.0% |
| !!! | ATGCATTTTTGTTTATTATT+AGG | - | chr8_1:52079844-52079863 | Msa1199820:intron | 15.0% |
| !! | TTGTAAAAAGTTACTATTAA+AGG | - | chr8_1:52080317-52080336 | Msa1199820:CDS | 15.0% |
| !!! | TATTATGTTGATTGTTAATT+TGG | - | chr8_1:52080410-52080429 | Msa1199820:CDS | 15.0% |
| !!! | AAATTAATTGTATTTTATGG+AGG | + | chr8_1:52080702-52080721 | None:intergenic | 15.0% |
| !!! | ATATTTATTGATTATAGTAC+TGG | - | chr8_1:52080854-52080873 | Msa1199820:CDS | 15.0% |
| !! | TGTAATTTAAATAAAGACTT+TGG | + | chr8_1:52082263-52082282 | None:intergenic | 15.0% |
| !!! | GTTTTTCAATAATCTTAATT+TGG | - | chr8_1:52083333-52083352 | Msa1199820:intron | 15.0% |
| !!! | TTTTTTCTTTTTTTTTACTC+CGG | - | chr8_1:52084851-52084870 | Msa1199820:five_prime_UTR | 15.0% |
| !! | ATGTTGTAAAATGAAAATGT+CGG | + | chr8_1:52079366-52079385 | None:intergenic | 20.0% |
| !! | TTGAAATGTGATATGAAAAT+AGG | - | chr8_1:52079487-52079506 | Msa1199820:three_prime_UTR | 20.0% |
| !! | TGAAATGTGATATGAAAATA+GGG | - | chr8_1:52079488-52079507 | Msa1199820:three_prime_UTR | 20.0% |
| !!! | TCTCTTTCTATTTTCTTAAA+AGG | - | chr8_1:52079974-52079993 | Msa1199820:intron | 20.0% |
| !!! | GTTACAATTTTGATTAATGT+TGG | - | chr8_1:52080129-52080148 | Msa1199820:intron | 20.0% |
| !! | ATGGTTAGAAAATGAATATA+AGG | + | chr8_1:52080488-52080507 | None:intergenic | 20.0% |
| !! | ATGAGTTTAATGAACTAAAA+TGG | + | chr8_1:52080507-52080526 | None:intergenic | 20.0% |
| !!! | AGTAATTAATTTTGTTGCAT+TGG | - | chr8_1:52080587-52080606 | Msa1199820:intron | 20.0% |
| !! | ATAATTGTAGAACATTTATG+AGG | + | chr8_1:52080914-52080933 | None:intergenic | 20.0% |
| !! | TTGATTGTAGAACATTTAAT+AGG | + | chr8_1:52080952-52080971 | None:intergenic | 20.0% |
| !! | TATATACAAGTTTAACTCAA+TGG | - | chr8_1:52081312-52081331 | Msa1199820:intron | 20.0% |
| !!! | ACTAAAACTGATGTTATTTT+GGG | + | chr8_1:52081896-52081915 | None:intergenic | 20.0% |
| !!! | TTTTTTGCTTATATTTACAG+AGG | - | chr8_1:52082178-52082197 | Msa1199820:intron | 20.0% |
| !! | AATATAATGTAGTATGATGA+AGG | + | chr8_1:52082317-52082336 | None:intergenic | 20.0% |
| !!! | ACATTATATTTCTATTCAGA+TGG | - | chr8_1:52082327-52082346 | Msa1199820:intron | 20.0% |
| !! | AACATTACCTTCATTATATT+AGG | + | chr8_1:52082474-52082493 | None:intergenic | 20.0% |
| !!! | ATTTTAGTTTGTTCATAATG+TGG | - | chr8_1:52082580-52082599 | Msa1199820:CDS | 20.0% |
| !!! | GATGATATAATTTACTGATT+TGG | - | chr8_1:52082739-52082758 | Msa1199820:intron | 20.0% |
| !!! | AGATAAAACAGTATTTTGAA+TGG | + | chr8_1:52083127-52083146 | None:intergenic | 20.0% |
| !!! | TATTTTGTAACATTTGAAAG+TGG | - | chr8_1:52083509-52083528 | Msa1199820:intron | 20.0% |
| !!! | CAAATTCTCATATTTTTTAC+AGG | - | chr8_1:52083587-52083606 | Msa1199820:intron | 20.0% |
| !!! | AATTTTTTGTAATATGATGC+AGG | - | chr8_1:52084048-52084067 | Msa1199820:intron | 20.0% |
| !! | TCATAAAAAATGTGTATTCT+AGG | - | chr8_1:52084287-52084306 | Msa1199820:intron | 20.0% |
| !! | AAACAAACACTAAATTACAA+AGG | - | chr8_1:52084773-52084792 | Msa1199820:five_prime_UTR | 20.0% |
| ! | TCATTAATCATTACTATGTC+AGG | - | chr8_1:52079390-52079409 | Msa1199820:three_prime_UTR | 25.0% |
| ! | GAAATGTGATATGAAAATAG+GGG | - | chr8_1:52079489-52079508 | Msa1199820:three_prime_UTR | 25.0% |
| ! | GGAAAAGCAAAATTGATTAT+AGG | - | chr8_1:52079647-52079666 | Msa1199820:exon | 25.0% |
| !!! | TTATTAGGTTTTTGAAAGCT+AGG | - | chr8_1:52079859-52079878 | Msa1199820:intron | 25.0% |
| !!! | TATTAGGTTTTTGAAAGCTA+GGG | - | chr8_1:52079860-52079879 | Msa1199820:intron | 25.0% |
| !! | ATTTCACCATTTTCCAAAAT+TGG | - | chr8_1:52080022-52080041 | Msa1199820:CDS | 25.0% |
| ! | AATTTGTATAATCAGTGCAT+TGG | + | chr8_1:52080296-52080315 | None:intergenic | 25.0% |
| !!! | GTTGATTTGTTGACTAATTT+GGG | + | chr8_1:52080466-52080485 | None:intergenic | 25.0% |
| !! | ATTCTCATGATTTTGTAAAC+AGG | + | chr8_1:52080618-52080637 | None:intergenic | 25.0% |
| !! | TTTAAGAGTGACTTTTATTC+AGG | - | chr8_1:52080771-52080790 | Msa1199820:intron | 25.0% |
| !! | TTAAGAGTGACTTTTATTCA+GGG | - | chr8_1:52080772-52080791 | Msa1199820:intron | 25.0% |
| !!! | TTGTTTTTTTGCTTGTAGTA+CGG | - | chr8_1:52080820-52080839 | Msa1199820:intron | 25.0% |
| !!! | ATCTTAGCTTTTTTTAGATC+AGG | + | chr8_1:52081007-52081026 | None:intergenic | 25.0% |
| ! | AAAGCTAAGATTAATGTCTA+TGG | - | chr8_1:52081016-52081035 | Msa1199820:intron | 25.0% |
| ! | AGAATATGCTAAACATTGTA+GGG | + | chr8_1:52081065-52081084 | None:intergenic | 25.0% |
| ! | GAGCATTAAATTAGAGTAAT+TGG | - | chr8_1:52081107-52081126 | Msa1199820:CDS | 25.0% |
| ! | CTCTAAATTTCATCATTAAC+AGG | - | chr8_1:52081135-52081154 | Msa1199820:CDS | 25.0% |
| !! | AAAAGATGTTTTCCAGTTAA+AGG | - | chr8_1:52081286-52081305 | Msa1199820:intron | 25.0% |
| !! | AAAGATGTTTTCCAGTTAAA+GGG | - | chr8_1:52081287-52081306 | Msa1199820:intron | 25.0% |
| ! | TTGTATATATTCCCTTTAAC+TGG | + | chr8_1:52081301-52081320 | None:intergenic | 25.0% |
| ! | ATGTGTCTAATGATATTTGA+AGG | - | chr8_1:52081429-52081448 | Msa1199820:intron | 25.0% |
| !! | TTTTAAATATCGATCCATTG+TGG | + | chr8_1:52081587-52081606 | None:intergenic | 25.0% |
| !! | ATATTTAAAATACCATGTCC+AGG | - | chr8_1:52081597-52081616 | Msa1199820:intron | 25.0% |
| ! | ATGTACATCTAATATTGTTG+TGG | + | chr8_1:52081692-52081711 | None:intergenic | 25.0% |
| ! | ACAACAATATTAGATGTACA+TGG | - | chr8_1:52081691-52081710 | Msa1199820:CDS | 25.0% |
| !!! | GACTAAAACTGATGTTATTT+TGG | + | chr8_1:52081897-52081916 | None:intergenic | 25.0% |
| ! | AAGATAAATACATGTATCGT+TGG | + | chr8_1:52082154-52082173 | None:intergenic | 25.0% |
| ! | AAGTAATGCATTATATCAGT+AGG | + | chr8_1:52082217-52082236 | None:intergenic | 25.0% |
| !! | CATTACTTTCATGAATTTTC+AGG | - | chr8_1:52082229-52082248 | Msa1199820:intron | 25.0% |
| ! | ATTATATTAGGATCATTCCA+TGG | + | chr8_1:52082462-52082481 | None:intergenic | 25.0% |
| ! | GAATGATCCTAATATAATGA+AGG | - | chr8_1:52082464-52082483 | Msa1199820:CDS | 25.0% |
| ! | TTTGTAGTTGTGTTTGAAAA+TGG | + | chr8_1:52082661-52082680 | None:intergenic | 25.0% |
| !! | TTTTCAAACACAACTACAAA+AGG | - | chr8_1:52082661-52082680 | Msa1199820:intron | 25.0% |
| ! | TAACTCTTCTTGACAATAAA+TGG | - | chr8_1:52082690-52082709 | Msa1199820:intron | 25.0% |
| ! | TAATAACAAGTCTTCTCAAA+TGG | + | chr8_1:52083064-52083083 | None:intergenic | 25.0% |
| ! | AGATCAATTTCAATTTACTC+AGG | - | chr8_1:52083219-52083238 | Msa1199820:intron | 25.0% |
| !! | CAAAAATATTCCTTTGAAAG+TGG | - | chr8_1:52083394-52083413 | Msa1199820:intron | 25.0% |
| !! | ATATGAGAATTTGTTCAACA+TGG | + | chr8_1:52083478-52083497 | None:intergenic | 25.0% |
| ! | TTGTTCAACATGGAATATTA+AGG | + | chr8_1:52083570-52083589 | None:intergenic | 25.0% |
| !! | ATATGAGAATTTGTTCAACA+TGG | + | chr8_1:52083478-52083497 | None:intergenic | 25.0% |
| ! | AAAATTCTAATCCTAAACTG+TGG | + | chr8_1:52083724-52083743 | None:intergenic | 25.0% |
| !!! | ACAGTTTAGGATTAGAATTT+TGG | - | chr8_1:52083723-52083742 | Msa1199820:intron | 25.0% |
| ! | AAACCAACCTATGTTAATTT+AGG | - | chr8_1:52084313-52084332 | Msa1199820:intron | 25.0% |
| ! | AACCAACCTATGTTAATTTA+GGG | - | chr8_1:52084314-52084333 | Msa1199820:intron | 25.0% |
| ! | TCATTTACATAGAGAAACAT+AGG | - | chr8_1:52084684-52084703 | Msa1199820:intron | 25.0% |
| ! | AAACACTAAATTACAAAGGA+TGG | - | chr8_1:52084777-52084796 | Msa1199820:five_prime_UTR | 25.0% |
| ! | AACACTAAATTACAAAGGAT+GGG | - | chr8_1:52084778-52084797 | Msa1199820:five_prime_UTR | 25.0% |
| TAAGAAGGTCAAGAATAAGA+AGG | - | chr8_1:52079563-52079582 | Msa1199820:three_prime_UTR | 30.0% | |
| ATTCTCTCAAGAAAACAAGA+GGG | - | chr8_1:52079626-52079645 | Msa1199820:three_prime_UTR | 30.0% | |
| TCATCTCTATCATCTTCAAT+TGG | + | chr8_1:52079676-52079695 | None:intergenic | 30.0% | |
| ! | TGATAATGATCATGATTAGG+AGG | + | chr8_1:52079748-52079767 | None:intergenic | 30.0% |
| ! | GTGTGATAATGATCATGATT+AGG | + | chr8_1:52079751-52079770 | None:intergenic | 30.0% |
| TGGAAAATGGTGAAATTAAG+AGG | + | chr8_1:52080018-52080037 | None:intergenic | 30.0% | |
| ATCTTAGCCCAAATATTTGA+TGG | + | chr8_1:52080064-52080083 | None:intergenic | 30.0% | |
| TCAAATATTTGGGCTAAGAT+AGG | - | chr8_1:52080064-52080083 | Msa1199820:intron | 30.0% | |
| CAAATATTTGGGCTAAGATA+GGG | - | chr8_1:52080065-52080084 | Msa1199820:intron | 30.0% | |
| CTTGACATATTATCTGATGA+TGG | + | chr8_1:52080162-52080181 | None:intergenic | 30.0% | |
| !! | GGTTGATTTGTTGACTAATT+TGG | + | chr8_1:52080467-52080486 | None:intergenic | 30.0% |
| !! | TTGAACTGAGTCTTGTTAAA+AGG | - | chr8_1:52080736-52080755 | Msa1199820:intron | 30.0% |
| AATGTTCTACAATCAATCAC+TGG | - | chr8_1:52080956-52080975 | Msa1199820:CDS | 30.0% | |
| GAGAATATGCTAAACATTGT+AGG | + | chr8_1:52081066-52081085 | None:intergenic | 30.0% | |
| AGCATATTCTCAGAAAAGTA+TGG | - | chr8_1:52081075-52081094 | Msa1199820:intron | 30.0% | |
| GTTCTCTAAATGTACATAAG+AGG | - | chr8_1:52081172-52081191 | Msa1199820:CDS | 30.0% | |
| AATATTAGATGTACATGGCT+TGG | - | chr8_1:52081696-52081715 | Msa1199820:CDS | 30.0% | |
| ATAGTGTCATGTGTAATACA+GGG | - | chr8_1:52081776-52081795 | Msa1199820:intron | 30.0% | |
| AAGAGACAATGTAAAAACCT+CGG | + | chr8_1:52081873-52081892 | None:intergenic | 30.0% | |
| ! | GAGTTAGTTTACATAGTAAG+AGG | + | chr8_1:52081919-52081938 | None:intergenic | 30.0% |
| ! | TGCCTATATTTTGTTACAGA+GGG | + | chr8_1:52082111-52082130 | None:intergenic | 30.0% |
| ! | TTGCCTATATTTTGTTACAG+AGG | + | chr8_1:52082112-52082131 | None:intergenic | 30.0% |
| ! | GGCAAAAAAGTATATGTATC+TGG | - | chr8_1:52082127-52082146 | Msa1199820:CDS | 30.0% |
| !!! | AGTCAATTGCCAGATTTTTT+GGG | - | chr8_1:52082384-52082403 | Msa1199820:intron | 30.0% |
| !! | AGAGTATTGTGACACTAATT+TGG | - | chr8_1:52082549-52082568 | Msa1199820:CDS | 30.0% |
| ! | GAGTATTGTGACACTAATTT+GGG | - | chr8_1:52082550-52082569 | Msa1199820:CDS | 30.0% |
| !! | TTAGTTTGTTCATAATGTGG+AGG | - | chr8_1:52082583-52082602 | Msa1199820:CDS | 30.0% |
| ! | GTCAATTTTCTGTTGTTCAT+TGG | + | chr8_1:52082639-52082658 | None:intergenic | 30.0% |
| CTTCTTGACAATAAATGGTT+TGG | - | chr8_1:52082695-52082714 | Msa1199820:intron | 30.0% | |
| AGACTTAAAGGACTGATATA+GGG | - | chr8_1:52082814-52082833 | Msa1199820:intron | 30.0% | |
| TATAGAAAAAATCACGCTTC+CGG | + | chr8_1:52082854-52082873 | None:intergenic | 30.0% | |
| ACTAAGTTTCCTTTGTCTAA+TGG | + | chr8_1:52082987-52083006 | None:intergenic | 30.0% | |
| !! | ACAGTATTTTGAATGGTTGA+AGG | + | chr8_1:52083120-52083139 | None:intergenic | 30.0% |
| ! | CAAAATACTGTTTTATCTGC+AGG | - | chr8_1:52083129-52083148 | Msa1199820:intron | 30.0% |
| AAGCATTATCTTTACAGCTA+CGG | + | chr8_1:52083174-52083193 | None:intergenic | 30.0% | |
| !! | ATCTCTTTTGAGCGTTTTTT+CGG | + | chr8_1:52083203-52083222 | None:intergenic | 30.0% |
| CCATTGCAAAATGATGATAT+GGG | - | chr8_1:52083247-52083266 | Msa1199820:intron | 30.0% | |
| CATTGCAAAATGATGATATG+GGG | - | chr8_1:52083248-52083267 | Msa1199820:intron | 30.0% | |
| GAAACTAAACAAGACAATCT+AGG | + | chr8_1:52083364-52083383 | None:intergenic | 30.0% | |
| GTTTCAATTTCCACTTTCAA+AGG | + | chr8_1:52083407-52083426 | None:intergenic | 30.0% | |
| AAACTCACTAGCAAGTATTT+CGG | - | chr8_1:52083538-52083557 | Msa1199820:intron | 30.0% | |
| ACTTGACGCATATAAGAAAT+TGG | + | chr8_1:52083663-52083682 | None:intergenic | 30.0% | |
| !! | AAGTGTGCTGATATATCTTT+TGG | - | chr8_1:52083679-52083698 | Msa1199820:intron | 30.0% |
| !! | AAGACTAGAAAAAGCATTTG+TGG | - | chr8_1:52083856-52083875 | Msa1199820:intron | 30.0% |
| ! | TTTTTGTAATATGATGCAGG+TGG | - | chr8_1:52084051-52084070 | Msa1199820:intron | 30.0% |
| ACCAACCTATGTTAATTTAG+GGG | - | chr8_1:52084315-52084334 | Msa1199820:intron | 30.0% | |
| AAACTCCCCTAAATTAACAT+AGG | + | chr8_1:52084323-52084342 | None:intergenic | 30.0% | |
| ! | TGTTAATTTAGGGGAGTTTT+AGG | - | chr8_1:52084324-52084343 | Msa1199820:intron | 30.0% |
| CTAAATGCAAGCTCATTTAT+TGG | - | chr8_1:52084512-52084531 | Msa1199820:CDS | 30.0% | |
| AGAGAAACATAGGTATGAAA+TGG | - | chr8_1:52084694-52084713 | Msa1199820:intron | 30.0% | |
| AATGGTCCTCTATTTAGATT+TGG | - | chr8_1:52084712-52084731 | Msa1199820:intron | 30.0% | |
| ACCACATTATGACAAAATCA+AGG | - | chr8_1:52084821-52084840 | Msa1199820:five_prime_UTR | 30.0% | |
| ! | TCCTTGATTTTGTCATAATG+TGG | + | chr8_1:52084825-52084844 | None:intergenic | 30.0% |
| AACAAAGATGTTGTGTTGTG+TGG | + | chr8_1:52079303-52079322 | None:intergenic | 35.0% | |
| ATGTGATATGAAAATAGGGG+TGG | - | chr8_1:52079492-52079511 | Msa1199820:three_prime_UTR | 35.0% | |
| CAGAAGAAGAGAGATTAAGA+AGG | - | chr8_1:52079548-52079567 | Msa1199820:three_prime_UTR | 35.0% | |
| CATTCTCTCAAGAAAACAAG+AGG | - | chr8_1:52079625-52079644 | Msa1199820:three_prime_UTR | 35.0% | |
| AGATGATAGAGATGAACAAG+AGG | - | chr8_1:52079681-52079700 | Msa1199820:intron | 35.0% | |
| ATCATTATCACACACTCTTG+AGG | - | chr8_1:52079758-52079777 | Msa1199820:intron | 35.0% | |
| ! | GTTCTTTGGAGGAAACAATT+TGG | - | chr8_1:52079924-52079943 | Msa1199820:intron | 35.0% |
| TTGGTCCTCCATCAAATATT+TGG | - | chr8_1:52080053-52080072 | Msa1199820:intron | 35.0% | |
| TGGTCCTCCATCAAATATTT+GGG | - | chr8_1:52080054-52080073 | Msa1199820:intron | 35.0% | |
| TTAGCCCAAATATTTGATGG+AGG | + | chr8_1:52080061-52080080 | None:intergenic | 35.0% | |
| ! | AATGAGTGAAGTGTTAGAAG+TGG | + | chr8_1:52080437-52080456 | None:intergenic | 35.0% |
| ! | GACGCTTAATTTGAGACATA+AGG | - | chr8_1:52080564-52080583 | Msa1199820:intron | 35.0% |
| !! | CTTTTATTCAGGGAAAGTGT+TGG | - | chr8_1:52080782-52080801 | Msa1199820:intron | 35.0% |
| ! | TTTGCTTGTAGTACGGATTA+TGG | - | chr8_1:52080827-52080846 | Msa1199820:intron | 35.0% |
| !! | TTATAGTACTGGTTAGACTC+TGG | - | chr8_1:52080865-52080884 | Msa1199820:CDS | 35.0% |
| TACAATCAATCACTGGTAGT+AGG | - | chr8_1:52080963-52080982 | Msa1199820:intron | 35.0% | |
| TCATCATTAACAGGTTGCAT+TGG | - | chr8_1:52081144-52081163 | Msa1199820:CDS | 35.0% | |
| ! | GGATTTTGAATTTGAAGAGC+TGG | - | chr8_1:52081450-52081469 | Msa1199820:CDS | 35.0% |
| GTATTGCAATATTACCCTCA+AGG | - | chr8_1:52081478-52081497 | Msa1199820:CDS | 35.0% | |
| TATTACCCTCAAGGTTATCA+TGG | - | chr8_1:52081487-52081506 | Msa1199820:CDS | 35.0% | |
| !! | AGGTTATCATGGAGTTGATA+AGG | - | chr8_1:52081498-52081517 | Msa1199820:CDS | 35.0% |
| !! | TATCATGGAGTTGATAAGGA+AGG | - | chr8_1:52081502-52081521 | Msa1199820:CDS | 35.0% |
| GATAGTGTCATGTGTAATAC+AGG | - | chr8_1:52081775-52081794 | Msa1199820:intron | 35.0% | |
| AGAGACAATGTAAAAACCTC+GGG | + | chr8_1:52081872-52081891 | None:intergenic | 35.0% | |
| CAAATGTATATCGTCAATGC+TGG | - | chr8_1:52081967-52081986 | Msa1199820:intron | 35.0% | |
| ! | CTGTATCTTTGCGATAGTTT+TGG | + | chr8_1:52082043-52082062 | None:intergenic | 35.0% |
| CAAAACTATCGCAAAGATAC+AGG | - | chr8_1:52082041-52082060 | Msa1199820:intron | 35.0% | |
| CTCCCTCTGTAACAAAATAT+AGG | - | chr8_1:52082106-52082125 | Msa1199820:CDS | 35.0% | |
| CATTATATCAGTAGGACTTC+AGG | + | chr8_1:52082209-52082228 | None:intergenic | 35.0% | |
| !!! | CAGTCAATTGCCAGATTTTT+TGG | - | chr8_1:52082383-52082402 | Msa1199820:intron | 35.0% |
| TGGATGTCTTAGATCAAGTA+AGG | - | chr8_1:52082434-52082453 | Msa1199820:CDS | 35.0% | |
| GGATGTCTTAGATCAAGTAA+GGG | - | chr8_1:52082435-52082454 | Msa1199820:CDS | 35.0% | |
| CACAATACTCTAGATGAACA+TGG | + | chr8_1:52082540-52082559 | None:intergenic | 35.0% | |
| GTTGTTCATTGGAAACTTTG+AGG | + | chr8_1:52082628-52082647 | None:intergenic | 35.0% | |
| ATGTACGTCTTGAGACTTAA+AGG | - | chr8_1:52082802-52082821 | Msa1199820:intron | 35.0% | |
| GAGACTTAAAGGACTGATAT+AGG | - | chr8_1:52082813-52082832 | Msa1199820:intron | 35.0% | |
| TTAAAGGACTGATATAGGGT+CGG | - | chr8_1:52082818-52082837 | Msa1199820:intron | 35.0% | |
| ATATGTCAACAGCAGAATCT+TGG | - | chr8_1:52082936-52082955 | Msa1199820:intron | 35.0% | |
| ! | GTTTCCTTTGTCTAATGGAT+GGG | + | chr8_1:52082982-52083001 | None:intergenic | 35.0% |
| AGTTTCCTTTGTCTAATGGA+TGG | + | chr8_1:52082983-52083002 | None:intergenic | 35.0% | |
| GAAACTTAGTAATCCTCGTT+TGG | - | chr8_1:52082997-52083016 | Msa1199820:intron | 35.0% | |
| ! | GATCATGAAGAAGTGAGTTT+TGG | - | chr8_1:52083028-52083047 | Msa1199820:intron | 35.0% |
| AGTCTTCTCAAATGGTTCAA+AGG | + | chr8_1:52083056-52083075 | None:intergenic | 35.0% | |
| AGCTGTAAAGATAATGCTTC+TGG | - | chr8_1:52083175-52083194 | Msa1199820:intron | 35.0% | |
| GCCATTGCAAAATGATGATA+TGG | - | chr8_1:52083246-52083265 | Msa1199820:intron | 35.0% | |
| ! | CCCATATCATCATTTTGCAA+TGG | + | chr8_1:52083250-52083269 | None:intergenic | 35.0% |
| ACTTGTACAGAGAATTCCAA+AGG | - | chr8_1:52083277-52083296 | Msa1199820:intron | 35.0% | |
| TACAGAGAATTCCAAAGGTA+CGG | - | chr8_1:52083282-52083301 | Msa1199820:intron | 35.0% | |
| ACTTCGATCAGAAATTGGTT+CGG | - | chr8_1:52083611-52083630 | Msa1199820:intron | 35.0% | |
| !! | AAATTGGTTCGGCTTTGTTA+AGG | - | chr8_1:52083622-52083641 | Msa1199820:intron | 35.0% |
| GAGAACACAGAACAATATTG+TGG | - | chr8_1:52083745-52083764 | Msa1199820:intron | 35.0% | |
| AACACAGAACAATATTGTGG+TGG | - | chr8_1:52083748-52083767 | Msa1199820:intron | 35.0% | |
| !!! | GTGTTTTGACATCTTCTGTA+AGG | + | chr8_1:52083790-52083809 | None:intergenic | 35.0% |
| TGAAGACGTTCTTGTATACA+TGG | + | chr8_1:52083836-52083855 | None:intergenic | 35.0% | |
| ! | AGCATTTTCTCCTTTTCCAT+AGG | + | chr8_1:52083908-52083927 | None:intergenic | 35.0% |
| GAAAATGCTTATGAGCTCTT+TGG | - | chr8_1:52083919-52083938 | Msa1199820:intron | 35.0% | |
| ! | TAACCCTCTTGGTATTTTCA+AGG | + | chr8_1:52083970-52083989 | None:intergenic | 35.0% |
| AGTATAGAGAATAACCCTCT+TGG | + | chr8_1:52083981-52084000 | None:intergenic | 35.0% | |
| TCCCCTAAATTAACATAGGT+TGG | + | chr8_1:52084319-52084338 | None:intergenic | 35.0% | |
| !!! | GAGTTTTAGGAATGACTTCA+TGG | - | chr8_1:52084337-52084356 | Msa1199820:intron | 35.0% |
| !! | TTTTAGGAATGACTTCATGG+TGG | - | chr8_1:52084340-52084359 | Msa1199820:intron | 35.0% |
| !! | CAAAGAAGACTGTTTTGTTG+AGG | - | chr8_1:52084457-52084476 | Msa1199820:CDS | 35.0% |
| TCATTTATTGGACCCACAAA+AGG | - | chr8_1:52084524-52084543 | Msa1199820:CDS | 35.0% | |
| TCTGTCCATAGAGAAAACAT+AGG | - | chr8_1:52084585-52084604 | Msa1199820:CDS | 35.0% | |
| CTGTCCATAGAGAAAACATA+GGG | - | chr8_1:52084586-52084605 | Msa1199820:CDS | 35.0% | |
| CATAGAGAAAACATAGGGAT+GGG | - | chr8_1:52084591-52084610 | Msa1199820:CDS | 35.0% | |
| TAGTAAGAGCGAGATTTGAA+GGG | + | chr8_1:52084662-52084681 | None:intergenic | 35.0% | |
| TTAGTAAGAGCGAGATTTGA+AGG | + | chr8_1:52084663-52084682 | None:intergenic | 35.0% | |
| CACTGTCCAAATCTAAATAG+AGG | + | chr8_1:52084721-52084740 | None:intergenic | 35.0% | |
| CTATTTAGATTTGGACAGTG+TGG | - | chr8_1:52084721-52084740 | Msa1199820:exon | 35.0% | |
| ATCTCACTGAGATACTGTAG+TGG | + | chr8_1:52079280-52079299 | None:intergenic | 40.0% | |
| TTGAGAAGACCATTCAGATG+TGG | - | chr8_1:52079892-52079911 | Msa1199820:intron | 40.0% | |
| TGAGAAGACCATTCAGATGT+GGG | - | chr8_1:52079893-52079912 | Msa1199820:intron | 40.0% | |
| CATATCTTCCCACATCTGAA+TGG | + | chr8_1:52079904-52079923 | None:intergenic | 40.0% | |
| CATTCAGATGTGGGAAGATA+TGG | - | chr8_1:52079902-52079921 | Msa1199820:intron | 40.0% | |
| TGTGGGAAGATATGGTTCTT+TGG | - | chr8_1:52079910-52079929 | Msa1199820:intron | 40.0% | |
| GAAAGAGAAACCTTACCTTG+AGG | + | chr8_1:52079962-52079981 | None:intergenic | 40.0% | |
| TTTGATGGAGGACCAAAACT+GGG | + | chr8_1:52080049-52080068 | None:intergenic | 40.0% | |
| ATTTGATGGAGGACCAAAAC+TGG | + | chr8_1:52080050-52080069 | None:intergenic | 40.0% | |
| ! | CTTGTAGTACGGATTATGGT+TGG | - | chr8_1:52080831-52080850 | Msa1199820:CDS | 40.0% |
| AATCAGCAGTGTTCTATGCT+AGG | - | chr8_1:52081387-52081406 | Msa1199820:intron | 40.0% | |
| CAACTCCATGATAACCTTGA+GGG | + | chr8_1:52081495-52081514 | None:intergenic | 40.0% | |
| TCAACTCCATGATAACCTTG+AGG | + | chr8_1:52081496-52081515 | None:intergenic | 40.0% | |
| AATCCATCGCTTTGATGCAA+TGG | + | chr8_1:52081662-52081681 | None:intergenic | 40.0% | |
| !! | ATGTACATGGCTTGGTATGT+AGG | - | chr8_1:52081704-52081723 | Msa1199820:CDS | 40.0% |
| GAGACAATGTAAAAACCTCG+GGG | + | chr8_1:52081871-52081890 | None:intergenic | 40.0% | |
| TGTCTGCAAATACACGTTGA+CGG | + | chr8_1:52081941-52081960 | None:intergenic | 40.0% | |
| !! | TACACGATATCATCGACTCT+AGG | - | chr8_1:52082279-52082298 | Msa1199820:CDS | 40.0% |
| !!! | CAATTGCCAGATTTTTTGGG+TGG | - | chr8_1:52082387-52082406 | Msa1199820:intron | 40.0% |
| TTAGATCAAGTAAGGGTCCA+TGG | - | chr8_1:52082442-52082461 | Msa1199820:CDS | 40.0% | |
| GTCTCAAGACGTACATATCA+GGG | + | chr8_1:52082798-52082817 | None:intergenic | 40.0% | |
| AGTCTCAAGACGTACATATC+AGG | + | chr8_1:52082799-52082818 | None:intergenic | 40.0% | |
| ! | ACATCCTTTTCTCAACTTGC+AGG | - | chr8_1:52082901-52082920 | Msa1199820:intron | 40.0% |
| ! | CATCCTTTTCTCAACTTGCA+GGG | - | chr8_1:52082902-52082921 | Msa1199820:intron | 40.0% |
| CACTTCTTCATGATCAACTG+AGG | + | chr8_1:52083023-52083042 | None:intergenic | 40.0% | |
| ! | TACTGTTTTATCTGCAGGCT+AGG | - | chr8_1:52083134-52083153 | Msa1199820:intron | 40.0% |
| ! | ACTGTTTTATCTGCAGGCTA+GGG | - | chr8_1:52083135-52083154 | Msa1199820:intron | 40.0% |
| ! | ACAGAGAATTCCAAAGGTAC+GGG | - | chr8_1:52083283-52083302 | Msa1199820:intron | 40.0% |
| ACCATATGTACTGTTCCTGT+CGG | - | chr8_1:52083429-52083448 | Msa1199820:intron | 40.0% | |
| GATATGCTCTTCCACAGTTT+AGG | - | chr8_1:52083710-52083729 | Msa1199820:intron | 40.0% | |
| ! | TGTCAAAACACCTTCTGAAG+AGG | - | chr8_1:52083799-52083818 | Msa1199820:intron | 40.0% |
| AGAATACGATCCTCTTCAGA+AGG | + | chr8_1:52083812-52083831 | None:intergenic | 40.0% | |
| ! | TTTTCCATAGGTATTTCCGC+CGG | + | chr8_1:52083896-52083915 | None:intergenic | 40.0% |
| TGCTTATGAGCTCTTTGGAT+AGG | - | chr8_1:52083924-52083943 | Msa1199820:intron | 40.0% | |
| TCGACCTTGAAAATACCAAG+AGG | - | chr8_1:52083963-52083982 | Msa1199820:intron | 40.0% | |
| CGACCTTGAAAATACCAAGA+GGG | - | chr8_1:52083964-52083983 | Msa1199820:intron | 40.0% | |
| TGAGCTACTAGAGAATCTGA+AGG | - | chr8_1:52084108-52084127 | Msa1199820:intron | 40.0% | |
| TGAGTAGTTGTTATCACCAC+AGG | - | chr8_1:52084481-52084500 | Msa1199820:CDS | 40.0% | |
| GCATTTAGTATTGTCTCCTG+TGG | + | chr8_1:52084500-52084519 | None:intergenic | 40.0% | |
| ! | CCATCCCTATGTTTTCTCTA+TGG | + | chr8_1:52084593-52084612 | None:intergenic | 40.0% |
| CCATAGAGAAAACATAGGGA+TGG | - | chr8_1:52084590-52084609 | Msa1199820:CDS | 40.0% | |
| AGTAAGAGCGAGATTTGAAG+GGG | + | chr8_1:52084661-52084680 | None:intergenic | 40.0% | |
| AGTGGAGAGAAGGGAAAAAG+AGG | + | chr8_1:52079255-52079274 | None:intergenic | 45.0% | |
| ! | TGAGATACTGTAGTGGAGAG+TGG | + | chr8_1:52079273-52079292 | None:intergenic | 45.0% |
| GGGAAGATATGGTTCTTTGG+AGG | - | chr8_1:52079913-52079932 | Msa1199820:intron | 45.0% | |
| TGGAACTGATACCATCCTCA+AGG | - | chr8_1:52079944-52079963 | Msa1199820:intron | 45.0% | |
| CTGATACCATCCTCAAGGTA+AGG | - | chr8_1:52079949-52079968 | Msa1199820:intron | 45.0% | |
| GAGAAACCTTACCTTGAGGA+TGG | + | chr8_1:52079958-52079977 | None:intergenic | 45.0% | |
| !! | CTGGGGCCAATTTTGGAAAA+TGG | + | chr8_1:52080031-52080050 | None:intergenic | 45.0% |
| ! | TCCAAAATTGGCCCCAGTTT+TGG | - | chr8_1:52080034-52080053 | Msa1199820:CDS | 45.0% |
| ! | ACCAAAACTGGGGCCAATTT+TGG | + | chr8_1:52080038-52080057 | None:intergenic | 45.0% |
| TTGATGGAGGACCAAAACTG+GGG | + | chr8_1:52080048-52080067 | None:intergenic | 45.0% | |
| AAATGTTAACTAGTGCCCCC+GGG | + | chr8_1:52080357-52080376 | None:intergenic | 45.0% | |
| GAAATGTTAACTAGTGCCCC+CGG | + | chr8_1:52080358-52080377 | None:intergenic | 45.0% | |
| GCCTCTCAATGTAAACTGGT+CGG | + | chr8_1:52081528-52081547 | None:intergenic | 45.0% | |
| CCAAGCCTCTCAATGTAAAC+TGG | + | chr8_1:52081532-52081551 | None:intergenic | 45.0% | |
| CCAGTTTACATTGAGAGGCT+TGG | - | chr8_1:52081529-52081548 | Msa1199820:intron | 45.0% | |
| TTGTGGTTATGCGCATCAAG+CGG | + | chr8_1:52081570-52081589 | None:intergenic | 45.0% | |
| CTTGATGCGCATAACCACAA+TGG | - | chr8_1:52081570-52081589 | Msa1199820:intron | 45.0% | |
| TTTGATGCAATGGAGCATGC+TGG | + | chr8_1:52081652-52081671 | None:intergenic | 45.0% | |
| TGTGATAGCAGCCAAGAGAT+TGG | + | chr8_1:52081828-52081847 | None:intergenic | 45.0% | |
| AGATAACAGTTACTACCCCG+AGG | - | chr8_1:52081853-52081872 | Msa1199820:CDS | 45.0% | |
| TATATCGTCAATGCTGGTCC+TGG | - | chr8_1:52081973-52081992 | Msa1199820:intron | 45.0% | |
| ! | CAAAGCATCTTCCTAAAGCC+AGG | + | chr8_1:52081994-52082013 | None:intergenic | 45.0% |
| !! | CTGGCTTTAGGAAGATGCTT+TGG | - | chr8_1:52081992-52082011 | Msa1199820:intron | 45.0% |
| TCAAGAAACTTCTGAGCAGC+AGG | + | chr8_1:52082018-52082037 | None:intergenic | 45.0% | |
| TCGTGTAAATGTCCTGGAGA+AGG | - | chr8_1:52082411-52082430 | Msa1199820:CDS | 45.0% | |
| TGTAAATGTCCTGGAGAAGG+TGG | - | chr8_1:52082414-52082433 | Msa1199820:CDS | 45.0% | |
| CTTGCCCATCCATTAGACAA+AGG | - | chr8_1:52082975-52082994 | Msa1199820:intron | 45.0% | |
| CCATATGTACTGTTCCTGTC+GGG | - | chr8_1:52083430-52083449 | Msa1199820:intron | 45.0% | |
| CAGGCACTTCGATCAGAAAT+TGG | - | chr8_1:52083606-52083625 | Msa1199820:intron | 45.0% | |
| TGTGGAACTTAGCCATAGAC+CGG | - | chr8_1:52083874-52083893 | Msa1199820:intron | 45.0% | |
| GGCGGAAATACCTATGGAAA+AGG | - | chr8_1:52083895-52083914 | Msa1199820:intron | 45.0% | |
| TAGATTTGGACAGTGTGGAG+AGG | - | chr8_1:52084726-52084745 | Msa1199820:five_prime_UTR | 45.0% | |
| ! | GTAGTGGAGAGTGGAGAGAA+GGG | + | chr8_1:52079264-52079283 | None:intergenic | 50.0% |
| ! | TGTAGTGGAGAGTGGAGAGA+AGG | + | chr8_1:52079265-52079284 | None:intergenic | 50.0% |
| !! | AGCATGCTTAAAGAGTGCCC+CGG | + | chr8_1:52080230-52080249 | None:intergenic | 50.0% |
| AATGTTAACTAGTGCCCCCG+GGG | + | chr8_1:52080356-52080375 | None:intergenic | 50.0% | |
| GCCGACCAGTTTACATTGAG+AGG | - | chr8_1:52081524-52081543 | Msa1199820:intron | 50.0% | |
| GCTCCATTGCATCAAAGCGA+TGG | - | chr8_1:52081656-52081675 | Msa1199820:CDS | 50.0% | |
| ! | TCAATGCTGGTCCTGGCTTT+AGG | - | chr8_1:52081980-52081999 | Msa1199820:intron | 50.0% |
| CACGAGCCACCCAAAAAATC+TGG | + | chr8_1:52082396-52082415 | None:intergenic | 50.0% | |
| CTAAGACATCCACCTTCTCC+AGG | + | chr8_1:52082426-52082445 | None:intergenic | 50.0% | |
| TAGGGTCGGACTTTAAGCAC+CGG | - | chr8_1:52082832-52082851 | Msa1199820:intron | 50.0% | |
| ! | CGTCCCTGCAAGTTGAGAAA+AGG | + | chr8_1:52082908-52082927 | None:intergenic | 50.0% |
| TGATCAACTGAGGCCAAACG+AGG | + | chr8_1:52083013-52083032 | None:intergenic | 50.0% | |
| CCCGACAGGAACAGTACATA+TGG | + | chr8_1:52083433-52083452 | None:intergenic | 50.0% | |
| CGATACTAATCACACCCGAC+AGG | + | chr8_1:52083447-52083466 | None:intergenic | 50.0% | |
| TAGGTATTTCCGCCGGTCTA+TGG | + | chr8_1:52083889-52083908 | None:intergenic | 50.0% | |
| TAGACCGGCGGAAATACCTA+TGG | - | chr8_1:52083889-52083908 | Msa1199820:intron | 50.0% | |
| ATTGGACCCACAAAAGGCTG+AGG | - | chr8_1:52084530-52084549 | Msa1199820:CDS | 50.0% | |
| ! | TCCTTGCCTCAGCCTTTTGT+GGG | + | chr8_1:52084539-52084558 | None:intergenic | 50.0% |
| ! | TTCCTTGCCTCAGCCTTTTG+TGG | + | chr8_1:52084540-52084559 | None:intergenic | 50.0% |
| ! | GTCTTGTTAACGAGTGCCCC+CGG | - | chr8_1:52080208-52080227 | Msa1199820:CDS | 55.0% |
| TCTTGTTAACGAGTGCCCCC+GGG | - | chr8_1:52080209-52080228 | Msa1199820:CDS | 55.0% | |
| !! | ATGCTTAAAGAGTGCCCCGG+GGG | + | chr8_1:52080227-52080246 | None:intergenic | 55.0% |
| !! | CATGCTTAAAGAGTGCCCCG+GGG | + | chr8_1:52080228-52080247 | None:intergenic | 55.0% |
| !! | GCATGCTTAAAGAGTGCCCC+GGG | + | chr8_1:52080229-52080248 | None:intergenic | 55.0% |
| AAGGTCCTTAACCAGTGCCC+CGG | - | chr8_1:52080336-52080355 | Msa1199820:CDS | 55.0% | |
| GTTATGCGCATCAAGCGGCT+AGG | + | chr8_1:52081565-52081584 | None:intergenic | 55.0% | |
| CTCTCTCGAACTCCTGGACA+TGG | + | chr8_1:52081612-52081631 | None:intergenic | 55.0% | |
| GTAGAGCTCTCTCGAACTCC+TGG | + | chr8_1:52081618-52081637 | None:intergenic | 55.0% | |
| GGAGTTCGAGAGAGCTCTAC+AGG | - | chr8_1:52081618-52081637 | Msa1199820:intron | 55.0% | |
| GCCTACTGCTGCCAATCTCT+TGG | - | chr8_1:52081814-52081833 | Msa1199820:intron | 55.0% | |
| GCCAAGAGATTGGCAGCAGT+AGG | + | chr8_1:52081818-52081837 | None:intergenic | 55.0% | |
| GGTGGCTCGTGTAAATGTCC+TGG | - | chr8_1:52082405-52082424 | Msa1199820:intron | 55.0% | |
| GCAAGACACACCCGTACCTT+TGG | + | chr8_1:52083296-52083315 | None:intergenic | 55.0% | |
| AAGGTACGGGTGTGTCTTGC+AGG | - | chr8_1:52083296-52083315 | Msa1199820:intron | 55.0% | |
| AGGTACGGGTGTGTCTTGCA+GGG | - | chr8_1:52083297-52083316 | Msa1199820:intron | 55.0% | |
| GGAACTTAGCCATAGACCGG+CGG | - | chr8_1:52083877-52083896 | Msa1199820:intron | 55.0% | |
| ACCCACAAAAGGCTGAGGCA+AGG | - | chr8_1:52084535-52084554 | Msa1199820:CDS | 55.0% | |
| GGCTGAGGCAAGGAATGACA+CGG | - | chr8_1:52084545-52084564 | Msa1199820:CDS | 55.0% | |
| ! | TTTGGGGTGGAAGGACTAGC+CGG | + | chr8_1:52084873-52084892 | None:intergenic | 55.0% |
| CTTGTTAACGAGTGCCCCCG+GGG | - | chr8_1:52080210-52080229 | Msa1199820:CDS | 60.0% | |
| AGGTCCTTAACCAGTGCCCC+GGG | - | chr8_1:52080337-52080356 | Msa1199820:CDS | 60.0% | |
| GGTACGGGTGTGTCTTGCAG+GGG | - | chr8_1:52083298-52083317 | Msa1199820:intron | 60.0% | |
| GTACGGGTGTGTCTTGCAGG+GGG | - | chr8_1:52083299-52083318 | Msa1199820:intron | 60.0% | |
| TACGGGTGTGTCTTGCAGGG+GGG | - | chr8_1:52083300-52083319 | Msa1199820:intron | 60.0% | |
| GGTCCTTAACCAGTGCCCCG+GGG | - | chr8_1:52080338-52080357 | Msa1199820:CDS | 65.0% | |
| GTCCTTAACCAGTGCCCCGG+GGG | - | chr8_1:52080339-52080358 | Msa1199820:CDS | 65.0% | |
| ACGGGTGTGTCTTGCAGGGG+GGG | - | chr8_1:52083301-52083320 | Msa1199820:intron | 65.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | + | chr8_1:52080344-52080363 | None:intergenic | 70.0% |
| AACTAGTGCCCCCGGGGCAC+TGG | + | chr8_1:52080350-52080369 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 52079229 | 52084897 | 52079229 | ID=Msa1199820;Name=Msa1199820 |
| chr8_1 | mRNA | 52079229 | 52084897 | 52079229 | ID=Msa1199820-mRNA-1;Parent=Msa1199820;Name=Msa1199820-mRNA-1;_AED=0.11;_eAED=0.11;_QI=176|1|1|1|1|1|14|420|603 |
| chr8_1 | exon | 52079229 | 52079669 | 52079229 | ID=Msa1199820-mRNA-1:exon:16592;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52079982 | 52080056 | 52079982 | ID=Msa1199820-mRNA-1:exon:16591;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52080141 | 52080517 | 52080141 | ID=Msa1199820-mRNA-1:exon:16590;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52080828 | 52080975 | 52080828 | ID=Msa1199820-mRNA-1:exon:16589;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52081087 | 52081203 | 52081087 | ID=Msa1199820-mRNA-1:exon:16588;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52081444 | 52081539 | 52081444 | ID=Msa1199820-mRNA-1:exon:16587;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52081641 | 52081740 | 52081641 | ID=Msa1199820-mRNA-1:exon:16586;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52081826 | 52081875 | 52081826 | ID=Msa1199820-mRNA-1:exon:16585;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52082064 | 52082168 | 52082064 | ID=Msa1199820-mRNA-1:exon:16584;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52082252 | 52082329 | 52082252 | ID=Msa1199820-mRNA-1:exon:16583;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52082409 | 52082675 | 52082409 | ID=Msa1199820-mRNA-1:exon:16582;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52084161 | 52084260 | 52084161 | ID=Msa1199820-mRNA-1:exon:16581;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52084347 | 52084617 | 52084347 | ID=Msa1199820-mRNA-1:exon:16580;Parent=Msa1199820-mRNA-1 |
| chr8_1 | exon | 52084715 | 52084897 | 52084715 | ID=Msa1199820-mRNA-1:exon:16579;Parent=Msa1199820-mRNA-1 |
| chr8_1 | five_prime_UTR | 52084722 | 52084897 | 52084722 | ID=Msa1199820-mRNA-1:five_prime_utr;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52084715 | 52084721 | 52084715 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52084347 | 52084617 | 52084347 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52084161 | 52084260 | 52084161 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52082409 | 52082675 | 52082409 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52082252 | 52082329 | 52082252 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52082064 | 52082168 | 52082064 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52081826 | 52081875 | 52081826 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52081641 | 52081740 | 52081641 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52081444 | 52081539 | 52081444 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52081087 | 52081203 | 52081087 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52080828 | 52080975 | 52080828 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52080141 | 52080517 | 52080141 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52079982 | 52080056 | 52079982 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | CDS | 52079649 | 52079669 | 52079649 | ID=Msa1199820-mRNA-1:cds;Parent=Msa1199820-mRNA-1 |
| chr8_1 | three_prime_UTR | 52079229 | 52079648 | 52079229 | ID=Msa1199820-mRNA-1:three_prime_utr;Parent=Msa1199820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
