Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681280 | XP_003606273.1 | 95.907 | 562 | 3 | 1 | 1 | 562 | 1 | 542 | 0.0 | 1112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681280 | sp|Q9FNI7|CSLA2_ARATH | 76.250 | 560 | 99 | 4 | 5 | 562 | 5 | 532 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681280 | G7JM38 | 95.907 | 562 | 3 | 1 | 1 | 562 | 1 | 542 | 0.0 | 1112 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039790 | Msa0681280 | 0.807502 | 4.898628e-50 | -8.615850e-47 |
| Msa0054880 | Msa0681280 | 0.807887 | 4.058361e-50 | -8.615850e-47 |
| Msa0081520 | Msa0681280 | 0.832812 | 7.633476e-56 | -8.615850e-47 |
| Msa0623900 | Msa0681280 | 0.959743 | 8.862405e-118 | -8.615850e-47 |
| Msa0623910 | Msa0681280 | 0.936382 | 1.898093e-97 | -8.615850e-47 |
| Msa0626450 | Msa0681280 | 0.811035 | 8.562642e-51 | -8.615850e-47 |
| Msa0626490 | Msa0681280 | 0.814065 | 1.862355e-51 | -8.615850e-47 |
| Msa0640840 | Msa0681280 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
| Msa0664600 | Msa0681280 | 0.808545 | 2.938550e-50 | -8.615850e-47 |
| Msa0681260 | Msa0681280 | 0.998375 | 2.775060e-263 | -8.615850e-47 |
| Msa0681280 | Msa0703950 | 0.804257 | 2.355567e-49 | -8.615850e-47 |
| Msa0681280 | Msa0709780 | 0.801821 | 7.515313e-49 | -8.615850e-47 |
| Msa0681280 | Msa0711400 | 0.832820 | 7.601123e-56 | -8.615850e-47 |
| Msa0681280 | Msa0751870 | 0.804997 | 1.651303e-49 | -8.615850e-47 |
| Msa0681280 | Msa0880270 | 0.811367 | 7.252623e-51 | -8.615850e-47 |
| Msa0681280 | Msa0930450 | 0.818058 | 2.389949e-52 | -8.615850e-47 |
| Msa0681280 | Msa0981320 | 0.827651 | 1.390828e-54 | -8.615850e-47 |
| Msa0681280 | Msa1072960 | 0.823136 | 1.629600e-53 | -8.615850e-47 |
| Msa0681280 | Msa1113340 | 0.812872 | 3.406263e-51 | -8.615850e-47 |
| Msa0681280 | Msa1160910 | 0.821123 | 4.772469e-53 | -8.615850e-47 |
| Msa0681280 | Msa1173330 | 0.833633 | 4.766818e-56 | -8.615850e-47 |
| Msa0681280 | Msa1174840 | 0.824594 | 7.416449e-54 | -8.615850e-47 |
| Msa0681280 | Msa1199820 | 0.800034 | 1.741234e-48 | -8.615850e-47 |
| Msa0681280 | Msa1206230 | 0.818035 | 2.417994e-52 | -8.615850e-47 |
| Msa0681280 | Msa1232710 | 0.819534 | 1.104484e-52 | -8.615850e-47 |
| Msa0681280 | Msa1297970 | 0.817822 | 2.701076e-52 | -8.615850e-47 |
| Msa0681280 | Msa1306640 | 0.809779 | 1.598306e-50 | -8.615850e-47 |
| Msa0681280 | Msa1307570 | 0.822152 | 2.759889e-53 | -8.615850e-47 |
| Msa0681280 | Msa1313300 | 0.824082 | 9.787157e-54 | -8.615850e-47 |
| Msa0681280 | Msa1356830 | 0.808611 | 2.844352e-50 | -8.615850e-47 |
| Msa0681280 | Msa1359490 | 0.800564 | 1.358235e-48 | -8.615850e-47 |
| Msa0681280 | Msa1371910 | 0.844535 | 7.119064e-59 | -8.615850e-47 |
| Msa0681280 | Msa1418090 | 0.803531 | 3.334369e-49 | -8.615850e-47 |
| Msa0681280 | Msa1437940 | 0.835189 | 1.939853e-56 | -8.615850e-47 |
| Msa0681280 | Msa1440960 | 0.807576 | 4.724121e-50 | -8.615850e-47 |
| Msa0681280 | Msa1449930 | 0.853435 | 2.393894e-61 | -8.615850e-47 |
| Msa0134180 | Msa0681280 | 0.804624 | 1.975497e-49 | -8.615850e-47 |
| Msa0136650 | Msa0681280 | 0.808840 | 2.541899e-50 | -8.615850e-47 |
| Msa0173890 | Msa0681280 | 0.823983 | 1.032624e-53 | -8.615850e-47 |
| Msa0174450 | Msa0681280 | 0.825293 | 5.072417e-54 | -8.615850e-47 |
| Msa0180930 | Msa0681280 | 0.812761 | 3.603466e-51 | -8.615850e-47 |
| Msa0196190 | Msa0681280 | 0.813202 | 2.883386e-51 | -8.615850e-47 |
| Msa0222560 | Msa0681280 | 0.829932 | 3.903502e-55 | -8.615850e-47 |
| Msa0375640 | Msa0681280 | 0.835009 | 2.153313e-56 | -8.615850e-47 |
| Msa0390970 | Msa0681280 | 0.809943 | 1.473776e-50 | -8.615850e-47 |
| Msa0424160 | Msa0681280 | 0.839892 | 1.207489e-57 | -8.615850e-47 |
| Msa0430260 | Msa0681280 | 0.808991 | 2.359506e-50 | -8.615850e-47 |
| Msa0435370 | Msa0681280 | 0.817642 | 2.966403e-52 | -8.615850e-47 |
| Msa0435420 | Msa0681280 | 0.837051 | 6.527229e-57 | -8.615850e-47 |
| Msa0435570 | Msa0681280 | 0.831399 | 1.706541e-55 | -8.615850e-47 |
| Msa0478870 | Msa0681280 | 0.800209 | 1.604849e-48 | -8.615850e-47 |
| Msa0249540 | Msa0681280 | 0.809802 | 1.580438e-50 | -8.615850e-47 |
| Msa0292400 | Msa0681280 | 0.806747 | 7.080418e-50 | -8.615850e-47 |
| Msa0298500 | Msa0681280 | 0.800941 | 1.137899e-48 | -8.615850e-47 |
| Msa0301820 | Msa0681280 | 0.811599 | 6.458775e-51 | -8.615850e-47 |
| Msa0307270 | Msa0681280 | 0.807672 | 4.509458e-50 | -8.615850e-47 |
| Msa0307280 | Msa0681280 | 0.808529 | 2.962296e-50 | -8.615850e-47 |
| Msa0500380 | Msa0681280 | 0.817505 | 3.185471e-52 | -8.615850e-47 |
| Msa0515800 | Msa0681280 | 0.829667 | 4.529335e-55 | -8.615850e-47 |
| Msa0546110 | Msa0681280 | 0.897447 | 1.393190e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681280 | MtrunA17_Chr4g0027221 | 95.907 | 562 | 3 | 1 | 1 | 562 | 1 | 542 | 0.0 | 1112 |
| Msa0681280 | MtrunA17_Chr7g0265711 | 64.801 | 554 | 161 | 4 | 10 | 562 | 9 | 529 | 0.0 | 775 |
| Msa0681280 | MtrunA17_Chr1g0179441 | 64.630 | 540 | 158 | 2 | 23 | 562 | 14 | 520 | 0.0 | 753 |
| Msa0681280 | MtrunA17_Chr1g0198111 | 65.511 | 548 | 155 | 4 | 16 | 562 | 13 | 527 | 0.0 | 737 |
| Msa0681280 | MtrunA17_Chr1g0179381 | 60.870 | 552 | 181 | 4 | 12 | 562 | 2 | 519 | 0.0 | 722 |
| Msa0681280 | MtrunA17_Chr1g0179421 | 60.688 | 552 | 183 | 4 | 12 | 562 | 2 | 520 | 0.0 | 720 |
| Msa0681280 | MtrunA17_Chr7g0264621 | 53.381 | 562 | 224 | 4 | 1 | 562 | 4 | 527 | 0.0 | 636 |
| Msa0681280 | MtrunA17_Chr1g0179391 | 65.230 | 348 | 101 | 1 | 141 | 488 | 1 | 328 | 1.60e-178 | 506 |
| Msa0681280 | MtrunA17_Chr4g0000581 | 44.420 | 457 | 222 | 6 | 64 | 514 | 202 | 632 | 2.25e-133 | 404 |
| Msa0681280 | MtrunA17_Chr6g0451381 | 41.929 | 477 | 241 | 6 | 26 | 495 | 138 | 585 | 3.06e-133 | 403 |
| Msa0681280 | MtrunA17_Chr3g0135191 | 43.833 | 454 | 222 | 5 | 33 | 483 | 180 | 603 | 8.09e-130 | 395 |
| Msa0681280 | MtrunA17_Chr3g0139081 | 39.677 | 557 | 283 | 9 | 28 | 559 | 155 | 683 | 2.25e-129 | 394 |
| Msa0681280 | MtrunA17_Chr8g0339101 | 37.568 | 551 | 304 | 4 | 28 | 562 | 175 | 701 | 2.28e-122 | 376 |
| Msa0681280 | MtrunA17_Chr1g0179401 | 55.303 | 132 | 58 | 1 | 12 | 142 | 2 | 133 | 3.00e-46 | 159 |
| Msa0681280 | MtrunA17_Chr4g0064791 | 39.850 | 133 | 73 | 2 | 73 | 198 | 68 | 200 | 1.49e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681280 | AT5G22740.1 | 76.250 | 560 | 99 | 4 | 5 | 562 | 5 | 532 | 0.0 | 877 |
| Msa0681280 | AT5G03760.1 | 66.426 | 554 | 152 | 5 | 10 | 562 | 10 | 530 | 0.0 | 773 |
| Msa0681280 | AT1G23480.1 | 58.577 | 548 | 193 | 4 | 16 | 562 | 39 | 553 | 0.0 | 686 |
| Msa0681280 | AT1G23480.2 | 58.577 | 548 | 193 | 4 | 16 | 562 | 39 | 553 | 0.0 | 686 |
| Msa0681280 | AT1G23480.3 | 60.700 | 514 | 168 | 4 | 50 | 562 | 1 | 481 | 0.0 | 674 |
| Msa0681280 | AT4G13410.1 | 55.455 | 550 | 206 | 4 | 12 | 560 | 26 | 537 | 0.0 | 666 |
| Msa0681280 | AT5G16190.3 | 57.463 | 536 | 192 | 3 | 26 | 560 | 4 | 504 | 0.0 | 648 |
| Msa0681280 | AT2G35650.1 | 54.991 | 531 | 203 | 3 | 19 | 549 | 42 | 536 | 0.0 | 638 |
| Msa0681280 | AT1G24070.1 | 55.388 | 529 | 202 | 3 | 32 | 560 | 58 | 552 | 0.0 | 631 |
| Msa0681280 | AT5G16190.4 | 54.130 | 569 | 192 | 4 | 26 | 560 | 4 | 537 | 0.0 | 630 |
| Msa0681280 | AT2G35650.4 | 56.600 | 500 | 181 | 3 | 50 | 549 | 1 | 464 | 0.0 | 620 |
| Msa0681280 | AT2G35650.2 | 56.600 | 500 | 181 | 3 | 50 | 549 | 1 | 464 | 0.0 | 620 |
| Msa0681280 | AT5G16190.2 | 61.790 | 458 | 155 | 1 | 26 | 483 | 4 | 441 | 0.0 | 608 |
| Msa0681280 | AT5G16190.1 | 58.996 | 478 | 160 | 3 | 84 | 560 | 1 | 443 | 0.0 | 599 |
| Msa0681280 | AT3G56000.1 | 52.830 | 530 | 210 | 6 | 35 | 559 | 29 | 523 | 0.0 | 582 |
| Msa0681280 | AT4G16590.1 | 49.814 | 538 | 202 | 4 | 23 | 560 | 51 | 520 | 0.0 | 563 |
| Msa0681280 | AT1G23480.4 | 60.808 | 421 | 132 | 3 | 142 | 562 | 21 | 408 | 0.0 | 548 |
| Msa0681280 | AT4G13410.3 | 57.488 | 414 | 138 | 3 | 147 | 560 | 1 | 376 | 0.0 | 520 |
| Msa0681280 | AT2G35650.3 | 56.511 | 407 | 141 | 3 | 143 | 549 | 8 | 378 | 2.67e-174 | 498 |
| Msa0681280 | AT4G13410.2 | 56.589 | 387 | 140 | 3 | 12 | 397 | 26 | 385 | 2.00e-164 | 473 |
| Msa0681280 | AT1G24070.2 | 57.181 | 376 | 129 | 4 | 32 | 407 | 58 | 401 | 2.30e-155 | 451 |
| Msa0681280 | AT4G31590.1 | 42.739 | 482 | 246 | 6 | 6 | 483 | 138 | 593 | 3.97e-137 | 414 |
| Msa0681280 | AT3G28180.1 | 45.374 | 454 | 212 | 6 | 33 | 483 | 145 | 565 | 2.48e-136 | 411 |
| Msa0681280 | AT3G07330.1 | 39.273 | 550 | 298 | 3 | 28 | 562 | 153 | 681 | 6.07e-136 | 410 |
| Msa0681280 | AT3G07330.2 | 39.273 | 550 | 298 | 3 | 28 | 562 | 153 | 681 | 6.07e-136 | 410 |
| Msa0681280 | AT2G24630.1 | 38.087 | 575 | 309 | 9 | 6 | 559 | 138 | 686 | 2.50e-131 | 399 |
| Msa0681280 | AT2G24630.2 | 38.087 | 575 | 309 | 9 | 6 | 559 | 138 | 686 | 2.50e-131 | 399 |
| Msa0681280 | AT4G07960.1 | 39.194 | 546 | 286 | 8 | 33 | 562 | 183 | 698 | 4.32e-122 | 375 |
| Msa0681280 | AT4G07960.2 | 39.194 | 546 | 286 | 8 | 33 | 562 | 183 | 698 | 4.32e-122 | 375 |
Find 145 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGACCTTTCCATAAATT+TGG | 0.095743 | 4_4:+41435436 | None:intergenic |
| CACCTCTTGTTTCTCTAATT+TGG | 0.108542 | 4_4:+41439147 | None:intergenic |
| ACGACACTTACGAAACTTTA+AGG | 0.113447 | 4_4:+41434746 | None:intergenic |
| TTACGAAACTTTAAGGATTT+TGG | 0.126384 | 4_4:+41434753 | None:intergenic |
| AAATTATTTGTCACAAATTA+TGG | 0.147142 | 4_4:+41434404 | None:intergenic |
| CAAACATCGACCGTTGAATT+TGG | 0.165277 | 4_4:-41436323 | Msa0681280:CDS |
| ACCAAATCTACAGTTAATTT+AGG | 0.179982 | 4_4:-41434648 | Msa0681280:three_prime_UTR |
| ATAATTTGTGACAAATAATT+TGG | 0.181703 | 4_4:-41434402 | Msa0681280:three_prime_UTR |
| GAAAACAAGATCCAAATTTA+TGG | 0.196456 | 4_4:-41435447 | Msa0681280:CDS |
| CTGAGGTTCATGTTCCAATT+TGG | 0.199327 | 4_4:-41435847 | Msa0681280:CDS |
| TTTCATGGAAAGAGTTTATA+TGG | 0.210110 | 4_4:-41440120 | Msa0681280:CDS |
| CTAATTGGTTTGCTAGAATA+TGG | 0.211369 | 4_4:-41435584 | Msa0681280:CDS |
| CATATTCTAGCAAACCAATT+AGG | 0.216535 | 4_4:+41435585 | None:intergenic |
| CGTACCAAAGCGACCCTAAT+TGG | 0.229974 | 4_4:-41435599 | Msa0681280:CDS |
| TGAGGTTCATGTTCCAATTT+GGG | 0.231288 | 4_4:-41435846 | Msa0681280:CDS |
| TTCCTTTACTTGCCCATCTT+TGG | 0.241277 | 4_4:+41439183 | None:intergenic |
| TCAGCTACTCATGCTTTCTT+TGG | 0.243047 | 4_4:-41436827 | Msa0681280:CDS |
| ATGCAGGGACGGCCGGTATT+TGG | 0.246809 | 4_4:-41436577 | Msa0681280:intron |
| ACCTTCTCAATTGTAGGATT+TGG | 0.248263 | 4_4:-41434810 | Msa0681280:CDS |
| CCAAATCTACAGTTAATTTA+GGG | 0.250194 | 4_4:-41434647 | Msa0681280:three_prime_UTR |
| GAGCGGCCTGTGGGCTTTCA+TGG | 0.256933 | 4_4:-41439808 | Msa0681280:CDS |
| TCGCTGTTCGAGCAAGTCTT+AGG | 0.257915 | 4_4:-41436490 | Msa0681280:CDS |
| CATGAGCAGGCTAAATTTCT+TGG | 0.265023 | 4_4:-41434928 | Msa0681280:intron |
| AAATCTCAACCGCTGAATTA+AGG | 0.277787 | 4_4:+41436294 | None:intergenic |
| CCCTAAATTAACTGTAGATT+TGG | 0.280944 | 4_4:+41434647 | None:intergenic |
| CCTTGAACAAGAGCAATTTC+AGG | 0.303932 | 4_4:+41438987 | None:intergenic |
| GACTCTGGTATATAAACTTT+AGG | 0.307674 | 4_4:+41440266 | None:intergenic |
| CATGCTTTCTTTGGCTTCAA+TGG | 0.310696 | 4_4:-41436818 | Msa0681280:intron |
| TAGTTGTGCGCAAAGATATC+TGG | 0.325326 | 4_4:-41434226 | Msa0681280:three_prime_UTR |
| CAAGTCAAATTAAGATGATA+TGG | 0.326108 | 4_4:-41440220 | Msa0681280:CDS |
| CCTGAAATTGCTCTTGTTCA+AGG | 0.326116 | 4_4:-41438987 | Msa0681280:CDS |
| TGTAAAGAGAAAGAAATTAA+AGG | 0.330426 | 4_4:-41440339 | Msa0681280:five_prime_UTR |
| GTTCAAGGTCGTTGGAGATT+TGG | 0.339973 | 4_4:-41438972 | Msa0681280:intron |
| ATTGATGACAATGAAAATCT+TGG | 0.341186 | 4_4:+41434608 | None:intergenic |
| ACCTTAACCTTCTCAATTGT+AGG | 0.346965 | 4_4:-41434816 | Msa0681280:CDS |
| TCTGTTTGTTTCACATTCAT+AGG | 0.354373 | 4_4:-41440392 | Msa0681280:five_prime_UTR |
| CAGAACAACAGTTGAAGATA+TGG | 0.365102 | 4_4:-41436516 | Msa0681280:CDS |
| AAATGGCGATGGAGATTATA+AGG | 0.367253 | 4_4:-41436106 | Msa0681280:CDS |
| AAGAATGCAAGAGATGTCTT+TGG | 0.370356 | 4_4:-41436882 | Msa0681280:CDS |
| TCATATTTATAACGTTGTTC+AGG | 0.375349 | 4_4:+41440059 | None:intergenic |
| ATGTAAACAGCTCCCCAAAT+TGG | 0.378565 | 4_4:+41435833 | None:intergenic |
| ATTGTAGGATTTGGTTATGT+TGG | 0.379370 | 4_4:-41434801 | Msa0681280:CDS |
| TTCTACTGACCCTGTTGTTA+AGG | 0.383212 | 4_4:-41439750 | Msa0681280:intron |
| CGCTGTTCGAGCAAGTCTTA+GGG | 0.385066 | 4_4:-41436489 | Msa0681280:CDS |
| CTGAATGCTCTCAGAGTACT+TGG | 0.388265 | 4_4:+41436176 | None:intergenic |
| TCCTACAATTGAGAAGGTTA+AGG | 0.401066 | 4_4:+41434815 | None:intergenic |
| ATATTCTAGCAAACCAATTA+GGG | 0.403344 | 4_4:+41435586 | None:intergenic |
| TTGAGAAGGTTAAGGTTTGA+AGG | 0.410807 | 4_4:+41434823 | None:intergenic |
| GGAATTTGAACAAGAACAAC+AGG | 0.417109 | 4_4:+41439996 | None:intergenic |
| ATGGCTCTTCTAAGAAAATC+AGG | 0.417142 | 4_4:+41439029 | None:intergenic |
| CAGTAGAATCATCAAGTACT+TGG | 0.417324 | 4_4:+41439765 | None:intergenic |
| GTGTGCAGAAAGTGAAGTTC+TGG | 0.417439 | 4_4:-41435976 | Msa0681280:intron |
| TATGGAAAACTAATAAATAA+AGG | 0.423758 | 4_4:+41434422 | None:intergenic |
| CACAAGACCATCTGTGCTGC+TGG | 0.427142 | 4_4:+41436150 | None:intergenic |
| TTCTTTGACAACATTATTTG+TGG | 0.432930 | 4_4:-41434316 | Msa0681280:three_prime_UTR |
| TTCACAGTTGAGCAAGAAGT+TGG | 0.434090 | 4_4:-41436851 | Msa0681280:CDS |
| GTAAAGAGAAAGAAATTAAA+GGG | 0.434123 | 4_4:-41440338 | Msa0681280:five_prime_UTR |
| CAGGTTTATAAGGTTTCGAT+TGG | 0.436880 | 4_4:-41439830 | Msa0681280:CDS |
| AATGCAGCAAATGGTGGAAA+TGG | 0.437156 | 4_4:-41439210 | Msa0681280:intron |
| CTTCTTGCTCAACTGTGAAA+TGG | 0.437858 | 4_4:+41436855 | None:intergenic |
| CAAACCAATTAGGGTCGCTT+TGG | 0.439173 | 4_4:+41435595 | None:intergenic |
| AAAGGATCCAATAGAACAAA+AGG | 0.455383 | 4_4:+41435645 | None:intergenic |
| TTGCTCTTGTTCAAGGTCGT+TGG | 0.464965 | 4_4:-41438980 | Msa0681280:CDS |
| TAATTGGTTTGCTAGAATAT+GGG | 0.467443 | 4_4:-41435583 | Msa0681280:CDS |
| AGGTTAAGGTTTGAAGGAAG+AGG | 0.467765 | 4_4:+41434829 | None:intergenic |
| TCAGGATTACCAACAAGAAA+AGG | 0.469315 | 4_4:+41439005 | None:intergenic |
| ACCTCTCTTTCATTGAACAT+TGG | 0.472020 | 4_4:+41439975 | None:intergenic |
| TTTGTACCTTGGAGACCTCC+AGG | 0.476674 | 4_4:-41436456 | Msa0681280:intron |
| TTCATGGAAAGAGTTTATAT+GGG | 0.483092 | 4_4:-41440119 | Msa0681280:CDS |
| AATATGGGAGGGCTAATGAA+TGG | 0.486275 | 4_4:-41435568 | Msa0681280:CDS |
| CTTCAAGATGATGAAGAACT+TGG | 0.491348 | 4_4:-41440032 | Msa0681280:CDS |
| ATTTGTGACAAATAATTTGG+TGG | 0.493699 | 4_4:-41434399 | Msa0681280:three_prime_UTR |
| TCTTTGACAACATTATTTGT+GGG | 0.499035 | 4_4:-41434315 | Msa0681280:three_prime_UTR |
| ATATGGGAGGGCTAATGAAT+GGG | 0.499596 | 4_4:-41435567 | Msa0681280:CDS |
| TTTCGATTGGAGCGGCCTGT+GGG | 0.500405 | 4_4:-41439817 | Msa0681280:CDS |
| GTTTCGATTGGAGCGGCCTG+TGG | 0.501018 | 4_4:-41439818 | Msa0681280:CDS |
| CTTTAGACTGTTAGATAGTG+TGG | 0.501883 | 4_4:-41434500 | Msa0681280:three_prime_UTR |
| AGCAGCAATTCGCCAAATAC+CGG | 0.503544 | 4_4:+41436565 | None:intergenic |
| CTCCTCTACAAAGTACAAGA+AGG | 0.508959 | 4_4:-41434704 | Msa0681280:three_prime_UTR |
| AAGACATGACATTCTCGAAA+AGG | 0.511184 | 4_4:+41435627 | None:intergenic |
| AAGAAGATAGAAGTAATCAA+TGG | 0.520681 | 4_4:-41434584 | Msa0681280:three_prime_UTR |
| TGTTTACATTTCATTAGCAA+TGG | 0.522412 | 4_4:-41440153 | Msa0681280:CDS |
| AGGCTAAATTTCTTGGAGCT+AGG | 0.522894 | 4_4:-41434921 | Msa0681280:CDS |
| TCCCTTCTTGTACTTTGTAG+AGG | 0.524601 | 4_4:+41434702 | None:intergenic |
| TGCCAAAGATGGGCAAGTAA+AGG | 0.533260 | 4_4:-41439185 | Msa0681280:CDS |
| TCTACAGTTAATTTAGGGGA+AGG | 0.534022 | 4_4:-41434642 | Msa0681280:three_prime_UTR |
| AATCTTAATGCAGGGACGGC+CGG | 0.536598 | 4_4:-41436584 | Msa0681280:intron |
| CAAGATGATGAAGAACTTGG+TGG | 0.538757 | 4_4:-41440029 | Msa0681280:CDS |
| CAAATTGGAACATGAACCTC+AGG | 0.544374 | 4_4:+41435848 | None:intergenic |
| GAGCTACGATCTTGCGAACA+AGG | 0.545461 | 4_4:+41435924 | None:intergenic |
| AAAGCAGGTGCATTGAAAGA+AGG | 0.546072 | 4_4:-41439119 | Msa0681280:CDS |
| TGGAAATGGAATGCCAAAGA+TGG | 0.548465 | 4_4:-41439196 | Msa0681280:CDS |
| AAGTCAAATTAAGATGATAT+GGG | 0.549081 | 4_4:-41440219 | Msa0681280:CDS |
| CAATTAGGGTCGCTTTGGTA+CGG | 0.549734 | 4_4:+41435600 | None:intergenic |
| TTCGAGCAAGTCTTAGGGGA+TGG | 0.551876 | 4_4:-41436484 | Msa0681280:CDS |
| CTATCAATGAAGCAGGAGGA+TGG | 0.553186 | 4_4:-41436544 | Msa0681280:CDS |
| ATTGCTGCTATCAATGAAGC+AGG | 0.553711 | 4_4:-41436551 | Msa0681280:CDS |
| TGAGTTGAGAATGGTGATGA+TGG | 0.557907 | 4_4:+41435805 | None:intergenic |
| CTGTGGGCTTTCATGGCCGA+CGG | 0.558259 | 4_4:-41439801 | Msa0681280:CDS |
| AGTTCTTCATCATCTTGAAG+AGG | 0.559787 | 4_4:+41440035 | None:intergenic |
| CAAGATCCAAATTTATGGAA+AGG | 0.560045 | 4_4:-41435442 | Msa0681280:intron |
| GATTTACCTGGAGGTCTCCA+AGG | 0.562965 | 4_4:+41436450 | None:intergenic |
| CTCAGGAACCAAAATTGTGA+GGG | 0.566831 | 4_4:+41435865 | None:intergenic |
| TACTTTGTAGAGGAGAAACT+AGG | 0.570931 | 4_4:+41434712 | None:intergenic |
| ATTACCAACAAGAAAAGGAA+TGG | 0.571120 | 4_4:+41439010 | None:intergenic |
| TCCTCTACAAAGTACAAGAA+GGG | 0.574023 | 4_4:-41434703 | Msa0681280:three_prime_UTR |
| TAGTTCACTTGAAATGACTC+TGG | 0.578254 | 4_4:+41440251 | None:intergenic |
| GGATAAATTATGCACTCTTG+AGG | 0.579655 | 4_4:-41434378 | Msa0681280:three_prime_UTR |
| TCCAATGTTCAATGAAAGAG+AGG | 0.585758 | 4_4:-41439976 | Msa0681280:intron |
| TCAGATTCCAGCAGCACAGA+TGG | 0.587972 | 4_4:-41436157 | Msa0681280:CDS |
| CGATGTTTGACTATATCGAC+TGG | 0.589596 | 4_4:+41436337 | None:intergenic |
| ACCAAATCCTACAATTGAGA+AGG | 0.592924 | 4_4:+41434809 | None:intergenic |
| TTGGTTTGCTAGAATATGGG+AGG | 0.593945 | 4_4:-41435580 | Msa0681280:CDS |
| CTTCTAAGAAAATCAGGAGG+AGG | 0.594412 | 4_4:+41439035 | None:intergenic |
| ACAAGAGGTGGATACAAAGC+AGG | 0.594663 | 4_4:-41439134 | Msa0681280:CDS |
| AAGGTATAATCCAAATTCAA+CGG | 0.596113 | 4_4:+41436313 | None:intergenic |
| TTGAGAATGGTGATGATGGA+AGG | 0.598628 | 4_4:+41435809 | None:intergenic |
| GAGGTTCATGTTCCAATTTG+GGG | 0.599098 | 4_4:-41435845 | Msa0681280:CDS |
| TGGATTATACCTTAATTCAG+CGG | 0.604905 | 4_4:-41436303 | Msa0681280:intron |
| GCTGTTCGAGCAAGTCTTAG+GGG | 0.606955 | 4_4:-41436488 | Msa0681280:CDS |
| TGAATGAATGCAGCAAATGG+TGG | 0.612388 | 4_4:-41439216 | Msa0681280:intron |
| TGTTCCGACTGAGTTGAGAA+TGG | 0.616682 | 4_4:+41435796 | None:intergenic |
| CAGCAGCACAGATGGTCTTG+TGG | 0.617433 | 4_4:-41436149 | Msa0681280:CDS |
| ATCACCATTCTCAACTCAGT+CGG | 0.619321 | 4_4:-41435800 | Msa0681280:CDS |
| CGTCGGCCATGAAAGCCCAC+AGG | 0.620127 | 4_4:+41439802 | None:intergenic |
| TGGTTTGCTAGAATATGGGA+GGG | 0.620333 | 4_4:-41435579 | Msa0681280:CDS |
| GGAAATGGAATGCCAAAGAT+GGG | 0.629673 | 4_4:-41439195 | Msa0681280:CDS |
| TCGCAAGATCGTAGCTCACA+TGG | 0.630015 | 4_4:-41435918 | Msa0681280:CDS |
| CAAATTAGAGAAACAAGAGG+TGG | 0.630612 | 4_4:-41439146 | Msa0681280:CDS |
| CAAATCTACAGTTAATTTAG+GGG | 0.635764 | 4_4:-41434646 | Msa0681280:three_prime_UTR |
| CCTCAGGAACCAAAATTGTG+AGG | 0.640518 | 4_4:+41435864 | None:intergenic |
| GGATGCTATGACTATGTGCA+TGG | 0.646576 | 4_4:-41434873 | Msa0681280:CDS |
| TTATAAGGTTTCGATTGGAG+CGG | 0.647679 | 4_4:-41439825 | Msa0681280:CDS |
| AAGTAATCAATGGAGAACAA+AGG | 0.659534 | 4_4:-41434574 | Msa0681280:three_prime_UTR |
| TACCAAATTAGAGAAACAAG+AGG | 0.669909 | 4_4:-41439149 | Msa0681280:CDS |
| TTTGGAATACCTTAACAACA+GGG | 0.672446 | 4_4:+41439741 | None:intergenic |
| TCAGGAACCAAAATTGTGAG+GGG | 0.679056 | 4_4:+41435866 | None:intergenic |
| CAGGAACCAAAATTGTGAGG+GGG | 0.680810 | 4_4:+41435867 | None:intergenic |
| GCTGCTATCAATGAAGCAGG+AGG | 0.681209 | 4_4:-41436548 | Msa0681280:CDS |
| GATGGAGATTATAAGGAACA+AGG | 0.689212 | 4_4:-41436099 | Msa0681280:intron |
| TGGATCACGAGTCGATCCGT+CGG | 0.693005 | 4_4:+41439785 | None:intergenic |
| GCTCTTCTAAGAAAATCAGG+AGG | 0.701297 | 4_4:+41439032 | None:intergenic |
| TCAACTCAGTCGGAACACCA+AGG | 0.719213 | 4_4:-41435790 | Msa0681280:intron |
| TATGAATGTGAAACAAACAG+AGG | 0.730213 | 4_4:+41440394 | None:intergenic |
| TAAGACTTGCTCGAACAGCG+AGG | 0.744360 | 4_4:+41436492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAAATGAAAAAACA+TGG | + | chr4_4:41435107-41435126 | None:intergenic | 10.0% |
| !!! | AAAATAAAAAAACTTTTGTT+GGG | + | chr4_4:41435199-41435218 | None:intergenic | 10.0% |
| !!! | AAAAATAAAAAAACTTTTGT+TGG | + | chr4_4:41435200-41435219 | None:intergenic | 10.0% |
| !!! | AAATCTAAATTATCAATTTT+GGG | + | chr4_4:41435296-41435315 | None:intergenic | 10.0% |
| !!! | AAAATCTAAATTATCAATTT+TGG | + | chr4_4:41435297-41435316 | None:intergenic | 10.0% |
| !!! | AGATTTTTTTTAATTAAAAG+GGG | - | chr4_4:41435310-41435329 | Msa0681280:intron | 10.0% |
| !!! | GTTTAATTTTTATATAATGT+CGG | - | chr4_4:41435717-41435736 | Msa0681280:intron | 10.0% |
| !! | GTTAATATAAAATTAAAAAG+TGG | - | chr4_4:41436246-41436265 | Msa0681280:intron | 10.0% |
| !!! | ATTAAATTAAGAAATAGTTT+TGG | + | chr4_4:41437249-41437268 | None:intergenic | 10.0% |
| !!! | GTTAGTTTATTTATTTATTT+AGG | - | chr4_4:41437350-41437369 | Msa0681280:intron | 10.0% |
| !! | TTCTATAATAATTCTAATTT+GGG | + | chr4_4:41439508-41439527 | None:intergenic | 10.0% |
| !! | ATTCTATAATAATTCTAATT+TGG | + | chr4_4:41439509-41439528 | None:intergenic | 10.0% |
| !!! | TTAACAAGTTTTGATTTTTA+GGG | - | chr4_4:41434262-41434281 | Msa0681280:three_prime_UTR | 15.0% |
| !!! | TTGGTAACTTTTTTTTTTTA+CGG | - | chr4_4:41434722-41434741 | Msa0681280:three_prime_UTR | 15.0% |
| !!! | AAAAATTTGACATGAATTTT+TGG | + | chr4_4:41434906-41434925 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTAATTAAAAGG+GGG | - | chr4_4:41435311-41435330 | Msa0681280:intron | 15.0% |
| !!! | ATTTTTTTTAATTAAAAGGG+GGG | - | chr4_4:41435312-41435331 | Msa0681280:intron | 15.0% |
| !!! | AACTCTAATATTTTTTTTGA+AGG | + | chr4_4:41436518-41436537 | None:intergenic | 15.0% |
| !! | AAAAAAAAGTTAACATGTTT+AGG | - | chr4_4:41436949-41436968 | Msa0681280:intron | 15.0% |
| !!! | ACTTTTTTACTTTTATGTTT+TGG | + | chr4_4:41437619-41437638 | None:intergenic | 15.0% |
| !! | TTACTAAAAAAATTACACTA+AGG | + | chr4_4:41437647-41437666 | None:intergenic | 15.0% |
| !!! | GAAATTATGATTAAGTTTTT+TGG | + | chr4_4:41438589-41438608 | None:intergenic | 15.0% |
| !!! | ATTTTAATGATGTTTTGTTT+TGG | - | chr4_4:41438622-41438641 | Msa0681280:intron | 15.0% |
| !! | AATGAACTCATAATATTATA+AGG | - | chr4_4:41439526-41439545 | Msa0681280:intron | 15.0% |
| !!! | TTTACAGTTATATATTTTGT+TGG | - | chr4_4:41440180-41440199 | Msa0681280:CDS | 15.0% |
| !! | TATGGAAAACTAATAAATAA+AGG | + | chr4_4:41440207-41440226 | None:intergenic | 15.0% |
| !! | AAATTATTTGTCACAAATTA+TGG | + | chr4_4:41440225-41440244 | None:intergenic | 15.0% |
| !!! | ATAATTTGTGACAAATAATT+TGG | - | chr4_4:41440224-41440243 | Msa0681280:CDS | 15.0% |
| !! | AACTATAAAAACTAATTCAT+TGG | + | chr4_4:41440385-41440404 | None:intergenic | 15.0% |
| !!! | CTTAACAAGTTTTGATTTTT+AGG | - | chr4_4:41434261-41434280 | Msa0681280:three_prime_UTR | 20.0% |
| !!! | TAACAAGTTTTGATTTTTAG+GGG | - | chr4_4:41434263-41434282 | Msa0681280:three_prime_UTR | 20.0% |
| !! | TGTAAAGAGAAAGAAATTAA+AGG | - | chr4_4:41434287-41434306 | Msa0681280:three_prime_UTR | 20.0% |
| !! | GTAAAGAGAAAGAAATTAAA+GGG | - | chr4_4:41434288-41434307 | Msa0681280:three_prime_UTR | 20.0% |
| !! | AAGTCAAATTAAGATGATAT+GGG | - | chr4_4:41434407-41434426 | Msa0681280:three_prime_UTR | 20.0% |
| !! | TTCAAAAATGGTACAATTAA+TGG | + | chr4_4:41434447-41434466 | None:intergenic | 20.0% |
| !!! | TAATGTTGTTTTTCTATTAC+AGG | - | chr4_4:41434777-41434796 | Msa0681280:exon | 20.0% |
| !!! | TTTTCTATTACAGGTTTATA+AGG | - | chr4_4:41434786-41434805 | Msa0681280:exon | 20.0% |
| !! | TCTTAAAATGACATCAAATT+TGG | + | chr4_4:41435084-41435103 | None:intergenic | 20.0% |
| !!! | TAAATTATCAATTTTGGGAT+TGG | + | chr4_4:41435291-41435310 | None:intergenic | 20.0% |
| !! | CAATGTATCAAAATTAAACT+CGG | + | chr4_4:41435794-41435813 | None:intergenic | 20.0% |
| !!! | GTTTTTTATATTGATTGTGT+AGG | - | chr4_4:41436083-41436102 | Msa0681280:intron | 20.0% |
| !! | TTTAGTTGAACTTCTAAATT+TGG | - | chr4_4:41436412-41436431 | Msa0681280:intron | 20.0% |
| !! | AATTTGGCAAAAATATTATG+TGG | - | chr4_4:41436428-41436447 | Msa0681280:intron | 20.0% |
| !! | ATTTGGCAAAAATATTATGT+GGG | - | chr4_4:41436429-41436448 | Msa0681280:intron | 20.0% |
| !!! | AACTTTTTTTTTTTTTCCGA+AGG | + | chr4_4:41436940-41436959 | None:intergenic | 20.0% |
| !! | AAAAAAAGAAAATGGAACAA+GGG | - | chr4_4:41436999-41437018 | Msa0681280:intron | 20.0% |
| !! | TAGTAGAAAACTTTGATATT+TGG | + | chr4_4:41437049-41437068 | None:intergenic | 20.0% |
| !! | TCATTCATAATAATCATACT+TGG | - | chr4_4:41437270-41437289 | Msa0681280:intron | 20.0% |
| !! | TTAATAATACTAAGTAGTAG+TGG | - | chr4_4:41437326-41437345 | Msa0681280:intron | 20.0% |
| !! | ATAAAAATCATGTGTTTATG+TGG | - | chr4_4:41437449-41437468 | Msa0681280:intron | 20.0% |
| !! | TAAAAATCATGTGTTTATGT+GGG | - | chr4_4:41437450-41437469 | Msa0681280:intron | 20.0% |
| !!! | TTAACTTTAACTTTTTCACA+AGG | + | chr4_4:41437592-41437611 | None:intergenic | 20.0% |
| !! | TGTTATAGTAATATTGAGAA+TGG | - | chr4_4:41437684-41437703 | Msa0681280:intron | 20.0% |
| !! | TTCAAATTAATAAAGTGCAA+GGG | + | chr4_4:41437949-41437968 | None:intergenic | 20.0% |
| !!! | CTTACTAATGTTTCATATTT+TGG | - | chr4_4:41438019-41438038 | Msa0681280:intron | 20.0% |
| !! | AACAATAAAAAAGACAAATC+TGG | - | chr4_4:41439120-41439139 | Msa0681280:CDS | 20.0% |
| !!! | ATATTCTAAAATCTTCTGTA+AGG | + | chr4_4:41439451-41439470 | None:intergenic | 20.0% |
| !!! | CAATTTTGAAGTATCATATT+AGG | - | chr4_4:41439634-41439653 | Msa0681280:intron | 20.0% |
| !!! | AACAAGTTTTGATTTTTAGG+GGG | - | chr4_4:41434264-41434283 | Msa0681280:three_prime_UTR | 25.0% |
| ! | CAAGTCAAATTAAGATGATA+TGG | - | chr4_4:41434406-41434425 | Msa0681280:three_prime_UTR | 25.0% |
| ! | TAAACACAAGCATTCAAAAA+TGG | + | chr4_4:41434459-41434478 | None:intergenic | 25.0% |
| ! | TGTTTACATTTCATTAGCAA+TGG | - | chr4_4:41434473-41434492 | Msa0681280:three_prime_UTR | 25.0% |
| ! | TTTCATGGAAAGAGTTTATA+TGG | - | chr4_4:41434506-41434525 | Msa0681280:three_prime_UTR | 25.0% |
| ! | TTCATGGAAAGAGTTTATAT+GGG | - | chr4_4:41434507-41434526 | Msa0681280:three_prime_UTR | 25.0% |
| !!! | TATGGGTTTTGTTATCATTT+TGG | - | chr4_4:41434524-41434543 | Msa0681280:three_prime_UTR | 25.0% |
| ! | TCATATTTATAACGTTGTTC+AGG | + | chr4_4:41434570-41434589 | None:intergenic | 25.0% |
| !!! | GTTCTTTGTTTTTGTTCTTT+TGG | - | chr4_4:41434693-41434712 | Msa0681280:three_prime_UTR | 25.0% |
| !! | TTTGTTCTTTTGGATTCTTT+TGG | - | chr4_4:41434703-41434722 | Msa0681280:three_prime_UTR | 25.0% |
| !! | AAGCTTTTACAAAATTACTG+TGG | - | chr4_4:41435045-41435064 | Msa0681280:intron | 25.0% |
| !! | AATTTCTAGATTCATAGTGT+CGG | - | chr4_4:41436000-41436019 | Msa0681280:intron | 25.0% |
| ! | ATAATGTTACAAAAACAACC+TGG | - | chr4_4:41436377-41436396 | Msa0681280:intron | 25.0% |
| ! | TAATGTTACAAAAACAACCT+GGG | - | chr4_4:41436378-41436397 | Msa0681280:intron | 25.0% |
| ! | TTTGGCAAAAATATTATGTG+GGG | - | chr4_4:41436430-41436449 | Msa0681280:intron | 25.0% |
| !!! | ATGAATAGGTTATTTTGTCA+AGG | - | chr4_4:41436455-41436474 | Msa0681280:intron | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr4_4:41436608-41436627 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr4_4:41436607-41436626 | Msa0681280:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr4_4:41436620-41436639 | Msa0681280:intron | 25.0% |
| !!! | AACCACTTTTTGACAAATTT+TGG | + | chr4_4:41436705-41436724 | None:intergenic | 25.0% |
| ! | TATTATGTATAGATCCAATG+TGG | - | chr4_4:41436750-41436769 | Msa0681280:intron | 25.0% |
| ! | ATTATGTATAGATCCAATGT+GGG | - | chr4_4:41436751-41436770 | Msa0681280:intron | 25.0% |
| !! | TAAGTTAACATGTTTTCCTT+CGG | - | chr4_4:41436921-41436940 | Msa0681280:intron | 25.0% |
| ! | ACATGTTTAGGAAAAGAAAA+TGG | - | chr4_4:41436961-41436980 | Msa0681280:intron | 25.0% |
| ! | CAAAAAAAGAAAATGGAACA+AGG | - | chr4_4:41436998-41437017 | Msa0681280:intron | 25.0% |
| ! | AATAATAATATGTGTCAGTG+TGG | - | chr4_4:41437135-41437154 | Msa0681280:intron | 25.0% |
| ! | ATAATAATATGTGTCAGTGT+GGG | - | chr4_4:41437136-41437155 | Msa0681280:intron | 25.0% |
| ! | TGACATAAGAAATGAAAAGA+GGG | + | chr4_4:41437218-41437237 | None:intergenic | 25.0% |
| ! | CATAATAATCATACTTGGTT+AGG | - | chr4_4:41437275-41437294 | Msa0681280:intron | 25.0% |
| ! | CAAAAAGAAAAAGTCATCTT+TGG | + | chr4_4:41437477-41437496 | None:intergenic | 25.0% |
| !! | CTTTTTCTTTTTGTACCTTT+TGG | - | chr4_4:41437484-41437503 | Msa0681280:intron | 25.0% |
| ! | TTTACCTTACCTAATGATAT+TGG | - | chr4_4:41437552-41437571 | Msa0681280:intron | 25.0% |
| ! | ATTTGACGATGAAAAACATA+AGG | + | chr4_4:41437848-41437867 | None:intergenic | 25.0% |
| ! | CTTCAAATTAATAAAGTGCA+AGG | + | chr4_4:41437950-41437969 | None:intergenic | 25.0% |
| !!! | ATATTTTGGAATCTTAATGC+AGG | - | chr4_4:41438033-41438052 | Msa0681280:intron | 25.0% |
| !!! | TATTTTGGAATCTTAATGCA+GGG | - | chr4_4:41438034-41438053 | Msa0681280:intron | 25.0% |
| ! | TATTGAATAGAAGATTTACC+TGG | + | chr4_4:41438191-41438210 | None:intergenic | 25.0% |
| ! | ATAGATTGTGAATCATATGA+TGG | - | chr4_4:41438233-41438252 | Msa0681280:intron | 25.0% |
| ! | AAGGTATAATCCAAATTCAA+CGG | + | chr4_4:41438316-41438335 | None:intergenic | 25.0% |
| !! | CATTGCAACTTTCTTTTTAT+AGG | - | chr4_4:41438413-41438432 | Msa0681280:intron | 25.0% |
| ! | ATATTCTAGCAAACCAATTA+GGG | + | chr4_4:41439043-41439062 | None:intergenic | 25.0% |
| !!! | TAATTGGTTTGCTAGAATAT+GGG | - | chr4_4:41439043-41439062 | Msa0681280:CDS | 25.0% |
| !! | TTTCTTTTGAACTTTGACAT+TGG | + | chr4_4:41439163-41439182 | None:intergenic | 25.0% |
| ! | GAAAACAAGATCCAAATTTA+TGG | - | chr4_4:41439179-41439198 | Msa0681280:CDS | 25.0% |
| !! | CAAATTCTACATCTTCATTT+TGG | - | chr4_4:41439276-41439295 | Msa0681280:intron | 25.0% |
| ! | ATTAAAGGAATCTTGTAGTT+TGG | - | chr4_4:41439327-41439346 | Msa0681280:intron | 25.0% |
| ! | TCCTTCAATCATGAAATTAT+TGG | + | chr4_4:41439353-41439372 | None:intergenic | 25.0% |
| !!! | GTTATTTTGTTGTTTCTAGT+AGG | - | chr4_4:41439398-41439417 | Msa0681280:intron | 25.0% |
| !! | TAGGCTTGTAATTTTTGTTA+TGG | - | chr4_4:41439653-41439672 | Msa0681280:intron | 25.0% |
| !!! | TTACGAAACTTTAAGGATTT+TGG | + | chr4_4:41439876-41439895 | None:intergenic | 25.0% |
| ! | ACCAAATCTACAGTTAATTT+AGG | - | chr4_4:41439978-41439997 | Msa0681280:CDS | 25.0% |
| ! | CCAAATCTACAGTTAATTTA+GGG | - | chr4_4:41439979-41439998 | Msa0681280:CDS | 25.0% |
| ! | CAAATCTACAGTTAATTTAG+GGG | - | chr4_4:41439980-41439999 | Msa0681280:CDS | 25.0% |
| !! | ATTGATGACAATGAAAATCT+TGG | + | chr4_4:41440021-41440040 | None:intergenic | 25.0% |
| ! | AAGAAGATAGAAGTAATCAA+TGG | - | chr4_4:41440042-41440061 | Msa0681280:CDS | 25.0% |
| !!! | TTTTGTTTGCATAGATTGTT+TGG | - | chr4_4:41440150-41440169 | Msa0681280:CDS | 25.0% |
| ! | ATTTGTGACAAATAATTTGG+TGG | - | chr4_4:41440227-41440246 | Msa0681280:CDS | 25.0% |
| ! | TTCTTTGACAACATTATTTG+TGG | - | chr4_4:41440310-41440329 | Msa0681280:five_prime_UTR | 25.0% |
| ! | TCTTTGACAACATTATTTGT+GGG | - | chr4_4:41440311-41440330 | Msa0681280:five_prime_UTR | 25.0% |
| TATGAATGTGAAACAAACAG+AGG | + | chr4_4:41434235-41434254 | None:intergenic | 30.0% | |
| TCTGTTTGTTTCACATTCAT+AGG | - | chr4_4:41434234-41434253 | Msa0681280:three_prime_UTR | 30.0% | |
| GACTCTGGTATATAAACTTT+AGG | + | chr4_4:41434363-41434382 | None:intergenic | 30.0% | |
| !!! | TCATTTTGGTTAAGCTCTTT+TGG | - | chr4_4:41434538-41434557 | Msa0681280:three_prime_UTR | 30.0% |
| ! | TTTGGAATACCTTAACAACA+GGG | + | chr4_4:41434888-41434907 | None:intergenic | 30.0% |
| !!! | TTTTGGAATACCTTAACAAC+AGG | + | chr4_4:41434889-41434908 | None:intergenic | 30.0% |
| AATTCTTCAATCACCCAATA+AGG | - | chr4_4:41434933-41434952 | Msa0681280:intron | 30.0% | |
| AGAAAATGCAGATCCTTATT+GGG | + | chr4_4:41434949-41434968 | None:intergenic | 30.0% | |
| AAGAAAATGCAGATCCTTAT+TGG | + | chr4_4:41434950-41434969 | None:intergenic | 30.0% | |
| TTTACAAAATTACTGTGGCT+CGG | - | chr4_4:41435050-41435069 | Msa0681280:intron | 30.0% | |
| TACCAAATTAGAGAAACAAG+AGG | - | chr4_4:41435477-41435496 | Msa0681280:CDS | 30.0% | |
| ATTACCAACAAGAAAAGGAA+TGG | + | chr4_4:41435619-41435638 | None:intergenic | 30.0% | |
| ! | TTATATTGATTGTGTAGGAG+AGG | - | chr4_4:41436088-41436107 | Msa0681280:intron | 30.0% |
| ! | TATATTGATTGTGTAGGAGA+GGG | - | chr4_4:41436089-41436108 | Msa0681280:intron | 30.0% |
| AAGTCAAACAAGGACAAAAT+TGG | + | chr4_4:41436130-41436149 | None:intergenic | 30.0% | |
| !! | AATTTTGTCCTTGTTTGACT+TGG | - | chr4_4:41436129-41436148 | Msa0681280:CDS | 30.0% |
| !! | ATTTTGTCCTTGTTTGACTT+GGG | - | chr4_4:41436130-41436149 | Msa0681280:CDS | 30.0% |
| !! | AATTCTAAAGTATGAGTCGT+TGG | + | chr4_4:41436217-41436236 | None:intergenic | 30.0% |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr4_4:41436582-41436601 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr4_4:41436633-41436652 | Msa0681280:intron | 30.0% | |
| GTCCAAAATTTGTCAAAAAG+TGG | - | chr4_4:41436700-41436719 | Msa0681280:intron | 30.0% | |
| TAGGAAAAGAAAATGGAACA+AGG | - | chr4_4:41436968-41436987 | Msa0681280:intron | 30.0% | |
| AGGAAAAGAAAATGGAACAA+GGG | - | chr4_4:41436969-41436988 | Msa0681280:intron | 30.0% | |
| GTTGGGTCAAAAAAAGAAAA+TGG | - | chr4_4:41436991-41437010 | Msa0681280:intron | 30.0% | |
| AAATGGAACAAGGGTAAAAA+TGG | - | chr4_4:41437008-41437027 | Msa0681280:intron | 30.0% | |
| AATGGAACAAGGGTAAAAAT+GGG | - | chr4_4:41437009-41437028 | Msa0681280:intron | 30.0% | |
| ! | TTTTCTACTAGTTCCATCAA+AGG | - | chr4_4:41437059-41437078 | Msa0681280:intron | 30.0% |
| !! | GTGGTTTTGCAGTATATTTA+GGG | - | chr4_4:41437092-41437111 | Msa0681280:intron | 30.0% |
| GTGACATAAGAAATGAAAAG+AGG | + | chr4_4:41437219-41437238 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGTACCTTTTGGT+TGG | - | chr4_4:41437488-41437507 | Msa0681280:intron | 30.0% |
| AATGCATAATTCCATTACAG+TGG | + | chr4_4:41437514-41437533 | None:intergenic | 30.0% | |
| ATGACCAATATCATTAGGTA+AGG | + | chr4_4:41437559-41437578 | None:intergenic | 30.0% | |
| ! | TCTTGATGACCAATATCATT+AGG | + | chr4_4:41437564-41437583 | None:intergenic | 30.0% |
| TGGATTATACCTTAATTCAG+CGG | - | chr4_4:41438323-41438342 | Msa0681280:intron | 30.0% | |
| TATCATATCCATCTTTAGTG+CGG | - | chr4_4:41438881-41438900 | Msa0681280:intron | 30.0% | |
| CAATGAGTTTGACATAATCA+CGG | + | chr4_4:41438927-41438946 | None:intergenic | 30.0% | |
| ! | CAATTCACCTTTTGTTCTAT+TGG | - | chr4_4:41438974-41438993 | Msa0681280:CDS | 30.0% |
| AAAGGATCCAATAGAACAAA+AGG | + | chr4_4:41438984-41439003 | None:intergenic | 30.0% | |
| CATATTCTAGCAAACCAATT+AGG | + | chr4_4:41439044-41439063 | None:intergenic | 30.0% | |
| !! | CTAATTGGTTTGCTAGAATA+TGG | - | chr4_4:41439042-41439061 | Msa0681280:CDS | 30.0% |
| !!! | AACTTTGACATTGGTTTTCT+TGG | + | chr4_4:41439154-41439173 | None:intergenic | 30.0% |
| CAAGATCCAAATTTATGGAA+AGG | - | chr4_4:41439184-41439203 | Msa0681280:CDS | 30.0% | |
| AACTGACCTTTCCATAAATT+TGG | + | chr4_4:41439193-41439212 | None:intergenic | 30.0% | |
| GCCAATAATTTCATGATTGA+AGG | - | chr4_4:41439349-41439368 | Msa0681280:intron | 30.0% | |
| ! | TGATTTGAGTTCCAAACAAA+GGG | - | chr4_4:41439570-41439589 | Msa0681280:intron | 30.0% |
| GTGAACTATAGTACAAAACT+AGG | + | chr4_4:41439605-41439624 | None:intergenic | 30.0% | |
| ! | ATTGTAGGATTTGGTTATGT+TGG | - | chr4_4:41439825-41439844 | Msa0681280:CDS | 30.0% |
| ! | CTCAAAGAGATTTTACACTA+TGG | + | chr4_4:41439853-41439872 | None:intergenic | 30.0% |
| CCCTAAATTAACTGTAGATT+TGG | + | chr4_4:41439982-41440001 | None:intergenic | 30.0% | |
| AAGTAATCAATGGAGAACAA+AGG | - | chr4_4:41440052-41440071 | Msa0681280:CDS | 30.0% | |
| TGTGGGAAAAAAAAATCTTG+AGG | - | chr4_4:41440328-41440347 | Msa0681280:five_prime_UTR | 30.0% | |
| GAGAGAGATCTCATCAAAAA+TGG | - | chr4_4:41434326-41434345 | Msa0681280:three_prime_UTR | 35.0% | |
| TAGTTCACTTGAAATGACTC+TGG | + | chr4_4:41434378-41434397 | None:intergenic | 35.0% | |
| ! | AATGGCACTTATGCTTTTCA+TGG | - | chr4_4:41434491-41434510 | Msa0681280:three_prime_UTR | 35.0% |
| AGTTCTTCATCATCTTGAAG+AGG | + | chr4_4:41434594-41434613 | None:intergenic | 35.0% | |
| CTTCAAGATGATGAAGAACT+TGG | - | chr4_4:41434594-41434613 | Msa0681280:three_prime_UTR | 35.0% | |
| GGAATTTGAACAAGAACAAC+AGG | + | chr4_4:41434633-41434652 | None:intergenic | 35.0% | |
| TCCAATGTTCAATGAAAGAG+AGG | - | chr4_4:41434650-41434669 | Msa0681280:three_prime_UTR | 35.0% | |
| ACCTCTCTTTCATTGAACAT+TGG | + | chr4_4:41434654-41434673 | None:intergenic | 35.0% | |
| CAGGTTTATAAGGTTTCGAT+TGG | - | chr4_4:41434796-41434815 | Msa0681280:CDS | 35.0% | |
| TTATAAGGTTTCGATTGGAG+CGG | - | chr4_4:41434801-41434820 | Msa0681280:CDS | 35.0% | |
| CAGTAGAATCATCAAGTACT+TGG | + | chr4_4:41434864-41434883 | None:intergenic | 35.0% | |
| TCATGAATGAATGCAGCAAA+TGG | - | chr4_4:41435407-41435426 | Msa0681280:intron | 35.0% | |
| ! | CACCTCTTGTTTCTCTAATT+TGG | + | chr4_4:41435482-41435501 | None:intergenic | 35.0% |
| CAAATTAGAGAAACAAGAGG+TGG | - | chr4_4:41435480-41435499 | Msa0681280:CDS | 35.0% | |
| ! | ATGGCTCTTCTAAGAAAATC+AGG | + | chr4_4:41435600-41435619 | None:intergenic | 35.0% |
| TCAGGATTACCAACAAGAAA+AGG | + | chr4_4:41435624-41435643 | None:intergenic | 35.0% | |
| GAAAACAAACCCTTCAATCA+CGG | - | chr4_4:41436181-41436200 | Msa0681280:CDS | 35.0% | |
| AAAACAAACCCTTCAATCAC+GGG | - | chr4_4:41436182-41436201 | Msa0681280:CDS | 35.0% | |
| TATTATGTGGGGTCATGAAT+AGG | - | chr4_4:41436441-41436460 | Msa0681280:intron | 35.0% | |
| GGTCAACTCAAAAACAAGAA+CGG | - | chr4_4:41436772-41436791 | Msa0681280:intron | 35.0% | |
| GTCAACTCAAAAACAAGAAC+GGG | - | chr4_4:41436773-41436792 | Msa0681280:intron | 35.0% | |
| AAAGAAAATGGAACAAGGGT+TGG | - | chr4_4:41436973-41436992 | Msa0681280:intron | 35.0% | |
| AAGAAAATGGAACAAGGGTT+GGG | - | chr4_4:41436974-41436993 | Msa0681280:intron | 35.0% | |
| AATATACTGCAAAACCACGT+GGG | + | chr4_4:41437090-41437109 | None:intergenic | 35.0% | |
| AAATATACTGCAAAACCACG+TGG | + | chr4_4:41437091-41437110 | None:intergenic | 35.0% | |
| !! | CGTGGTTTTGCAGTATATTT+AGG | - | chr4_4:41437091-41437110 | Msa0681280:intron | 35.0% |
| AAGGTAAAGTACACTATCAC+AGG | + | chr4_4:41437540-41437559 | None:intergenic | 35.0% | |
| AAGAATGCAAGAGATGTCTT+TGG | - | chr4_4:41437744-41437763 | Msa0681280:intron | 35.0% | |
| TCGTTAGTCAAGATATTGTG+TGG | - | chr4_4:41437880-41437899 | Msa0681280:intron | 35.0% | |
| TGATGTAATCACATGTGTCT+AGG | + | chr4_4:41437995-41438014 | None:intergenic | 35.0% | |
| CAGAACAACAGTTGAAGATA+TGG | - | chr4_4:41438110-41438129 | Msa0681280:intron | 35.0% | |
| TGAATAGAAGATTTACCTGG+AGG | + | chr4_4:41438188-41438207 | None:intergenic | 35.0% | |
| AAATCTCAACCGCTGAATTA+AGG | + | chr4_4:41438335-41438354 | None:intergenic | 35.0% | |
| ! | ATTTTGCGGAAAAGATTAGC+AGG | + | chr4_4:41438504-41438523 | None:intergenic | 35.0% |
| ! | TGCTAATCTTTTCCGCAAAA+TGG | - | chr4_4:41438503-41438522 | Msa0681280:intron | 35.0% |
| AAATGGCGATGGAGATTATA+AGG | - | chr4_4:41438520-41438539 | Msa0681280:intron | 35.0% | |
| GATGGAGATTATAAGGAACA+AGG | - | chr4_4:41438527-41438546 | Msa0681280:intron | 35.0% | |
| TGAGGTTCATGTTCCAATTT+GGG | - | chr4_4:41438780-41438799 | Msa0681280:intron | 35.0% | |
| ATAGAAAATTAAGCGCACCT+TGG | + | chr4_4:41438856-41438875 | None:intergenic | 35.0% | |
| AAGACATGACATTCTCGAAA+AGG | + | chr4_4:41439002-41439021 | None:intergenic | 35.0% | |
| ! | AACAGAGTCTCCAAGTTTTT+CGG | + | chr4_4:41439091-41439110 | None:intergenic | 35.0% |
| AATCTTCTGTCATGTGCATA+TGG | + | chr4_4:41439476-41439495 | None:intergenic | 35.0% | |
| ! | GTGATTTGAGTTCCAAACAA+AGG | - | chr4_4:41439569-41439588 | Msa0681280:intron | 35.0% |
| ! | GATTTGAGTTCCAAACAAAG+GGG | - | chr4_4:41439571-41439590 | Msa0681280:intron | 35.0% |
| !! | ATGTGTTTTTGAACATGAGC+AGG | - | chr4_4:41439685-41439704 | Msa0681280:intron | 35.0% |
| TTGAGAAGGTTAAGGTTTGA+AGG | + | chr4_4:41439806-41439825 | None:intergenic | 35.0% | |
| ACCTTAACCTTCTCAATTGT+AGG | - | chr4_4:41439810-41439829 | Msa0681280:CDS | 35.0% | |
| TCCTACAATTGAGAAGGTTA+AGG | + | chr4_4:41439814-41439833 | None:intergenic | 35.0% | |
| ACCTTCTCAATTGTAGGATT+TGG | - | chr4_4:41439816-41439835 | Msa0681280:CDS | 35.0% | |
| ACCAAATCCTACAATTGAGA+AGG | + | chr4_4:41439820-41439839 | None:intergenic | 35.0% | |
| ACGACACTTACGAAACTTTA+AGG | + | chr4_4:41439883-41439902 | None:intergenic | 35.0% | |
| TACTTTGTAGAGGAGAAACT+AGG | + | chr4_4:41439917-41439936 | None:intergenic | 35.0% | |
| TCCTCTACAAAGTACAAGAA+GGG | - | chr4_4:41439923-41439942 | Msa0681280:intron | 35.0% | |
| TCTACAGTTAATTTAGGGGA+AGG | - | chr4_4:41439984-41440003 | Msa0681280:CDS | 35.0% | |
| CTTTAGACTGTTAGATAGTG+TGG | - | chr4_4:41440126-41440145 | Msa0681280:CDS | 35.0% | |
| GGATAAATTATGCACTCTTG+AGG | - | chr4_4:41440248-41440267 | Msa0681280:CDS | 35.0% | |
| CAAGATGATGAAGAACTTGG+TGG | - | chr4_4:41434597-41434616 | Msa0681280:three_prime_UTR | 40.0% | |
| TTCTACTGACCCTGTTGTTA+AGG | - | chr4_4:41434876-41434895 | Msa0681280:CDS | 40.0% | |
| GTTGGGACTATCACTTTGAA+TGG | + | chr4_4:41435182-41435201 | None:intergenic | 40.0% | |
| !! | TAATTAAAAGGGGGGTGTTG+AGG | - | chr4_4:41435320-41435339 | Msa0681280:intron | 40.0% |
| TGAATGAATGCAGCAAATGG+TGG | - | chr4_4:41435410-41435429 | Msa0681280:intron | 40.0% | |
| ! | AATGCAGCAAATGGTGGAAA+TGG | - | chr4_4:41435416-41435435 | Msa0681280:intron | 40.0% |
| TGGAAATGGAATGCCAAAGA+TGG | - | chr4_4:41435430-41435449 | Msa0681280:intron | 40.0% | |
| GGAAATGGAATGCCAAAGAT+GGG | - | chr4_4:41435431-41435450 | Msa0681280:intron | 40.0% | |
| TTCCTTTACTTGCCCATCTT+TGG | + | chr4_4:41435446-41435465 | None:intergenic | 40.0% | |
| AAAGCAGGTGCATTGAAAGA+AGG | - | chr4_4:41435507-41435526 | Msa0681280:CDS | 40.0% | |
| ! | CTTCTAAGAAAATCAGGAGG+AGG | + | chr4_4:41435594-41435613 | None:intergenic | 40.0% |
| ! | GCTCTTCTAAGAAAATCAGG+AGG | + | chr4_4:41435597-41435616 | None:intergenic | 40.0% |
| ! | AGAGCCATTCCTTTTCTTGT+TGG | - | chr4_4:41435612-41435631 | Msa0681280:CDS | 40.0% |
| CCTTGAACAAGAGCAATTTC+AGG | + | chr4_4:41435642-41435661 | None:intergenic | 40.0% | |
| CCTGAAATTGCTCTTGTTCA+AGG | - | chr4_4:41435639-41435658 | Msa0681280:CDS | 40.0% | |
| ! | TTCTAGATTCATAGTGTCGG+TGG | - | chr4_4:41436003-41436022 | Msa0681280:intron | 40.0% |
| !! | GATTGAAGGGTTTGTTTTCG+TGG | + | chr4_4:41436180-41436199 | None:intergenic | 40.0% |
| TGTTACAAAAACAACCTGGG+CGG | - | chr4_4:41436381-41436400 | Msa0681280:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | - | chr4_4:41436643-41436662 | Msa0681280:intron | 40.0% | |
| !!! | GTTTTTGAGTTGACCCACAT+TGG | + | chr4_4:41436767-41436786 | None:intergenic | 40.0% |
| AGAGGGAATAGTTGAAGTGT+CGG | + | chr4_4:41437201-41437220 | None:intergenic | 40.0% | |
| CTTCTTGCTCAACTGTGAAA+TGG | + | chr4_4:41437774-41437793 | None:intergenic | 40.0% | |
| TTCACAGTTGAGCAAGAAGT+TGG | - | chr4_4:41437775-41437794 | Msa0681280:intron | 40.0% | |
| TCAGCTACTCATGCTTTCTT+TGG | - | chr4_4:41437799-41437818 | Msa0681280:intron | 40.0% | |
| ! | CATGCTTTCTTTGGCTTCAA+TGG | - | chr4_4:41437808-41437827 | Msa0681280:intron | 40.0% |
| TTGGAATCTTAATGCAGGGA+CGG | - | chr4_4:41438038-41438057 | Msa0681280:intron | 40.0% | |
| ATTGCTGCTATCAATGAAGC+AGG | - | chr4_4:41438075-41438094 | Msa0681280:intron | 40.0% | |
| GCTGCAAAAGATTATGAGCT+AGG | + | chr4_4:41438266-41438285 | None:intergenic | 40.0% | |
| CGATGTTTGACTATATCGAC+TGG | + | chr4_4:41438292-41438311 | None:intergenic | 40.0% | |
| CAAACATCGACCGTTGAATT+TGG | - | chr4_4:41438303-41438322 | Msa0681280:intron | 40.0% | |
| !! | TAATCTCCATCGCCATTTTG+CGG | + | chr4_4:41438518-41438537 | None:intergenic | 40.0% |
| ! | TGTAATCCCCCTCACAATTT+TGG | - | chr4_4:41438753-41438772 | Msa0681280:intron | 40.0% |
| TCAGGAACCAAAATTGTGAG+GGG | + | chr4_4:41438763-41438782 | None:intergenic | 40.0% | |
| CTCAGGAACCAAAATTGTGA+GGG | + | chr4_4:41438764-41438783 | None:intergenic | 40.0% | |
| CAAATTGGAACATGAACCTC+AGG | + | chr4_4:41438781-41438800 | None:intergenic | 40.0% | |
| CTGAGGTTCATGTTCCAATT+TGG | - | chr4_4:41438779-41438798 | Msa0681280:intron | 40.0% | |
| GAGGTTCATGTTCCAATTTG+GGG | - | chr4_4:41438781-41438800 | Msa0681280:intron | 40.0% | |
| ATGTAAACAGCTCCCCAAAT+TGG | + | chr4_4:41438796-41438815 | None:intergenic | 40.0% | |
| !! | TTGAGAATGGTGATGATGGA+AGG | + | chr4_4:41438820-41438839 | None:intergenic | 40.0% |
| ! | TGAGTTGAGAATGGTGATGA+TGG | + | chr4_4:41438824-41438843 | None:intergenic | 40.0% |
| ATCACCATTCTCAACTCAGT+CGG | - | chr4_4:41438826-41438845 | Msa0681280:intron | 40.0% | |
| TGAATTGACCGCACTAAAGA+TGG | + | chr4_4:41438892-41438911 | None:intergenic | 40.0% | |
| ! | TCATCGTGTGAAACTTTTGC+AGG | - | chr4_4:41438950-41438969 | Msa0681280:intron | 40.0% |
| !! | TTGGTTTGCTAGAATATGGG+AGG | - | chr4_4:41439046-41439065 | Msa0681280:CDS | 40.0% |
| !! | TGGTTTGCTAGAATATGGGA+GGG | - | chr4_4:41439047-41439066 | Msa0681280:CDS | 40.0% |
| AATATGGGAGGGCTAATGAA+TGG | - | chr4_4:41439058-41439077 | Msa0681280:CDS | 40.0% | |
| ATATGGGAGGGCTAATGAAT+GGG | - | chr4_4:41439059-41439078 | Msa0681280:CDS | 40.0% | |
| GGACAAAATTCCCCTTTGTT+TGG | + | chr4_4:41439584-41439603 | None:intergenic | 40.0% | |
| CATGAGCAGGCTAAATTTCT+TGG | - | chr4_4:41439698-41439717 | Msa0681280:intron | 40.0% | |
| AGGCTAAATTTCTTGGAGCT+AGG | - | chr4_4:41439705-41439724 | Msa0681280:intron | 40.0% | |
| !! | GCAGTGTTTCTGTTCTTTTG+TGG | - | chr4_4:41439732-41439751 | Msa0681280:intron | 40.0% |
| AGGTTAAGGTTTGAAGGAAG+AGG | + | chr4_4:41439800-41439819 | None:intergenic | 40.0% | |
| CTCCTCTACAAAGTACAAGA+AGG | - | chr4_4:41439922-41439941 | Msa0681280:intron | 40.0% | |
| TCCCTTCTTGTACTTTGTAG+AGG | + | chr4_4:41439927-41439946 | None:intergenic | 40.0% | |
| TAGTTGTGCGCAAAGATATC+TGG | - | chr4_4:41440400-41440419 | Msa0681280:five_prime_UTR | 40.0% | |
| ! | AGAGAGAGAGAGTGTGAGAA+GGG | + | chr4_4:41434174-41434193 | None:intergenic | 45.0% |
| TGCCAAAGATGGGCAAGTAA+AGG | - | chr4_4:41435441-41435460 | Msa0681280:intron | 45.0% | |
| ACAAGAGGTGGATACAAAGC+AGG | - | chr4_4:41435492-41435511 | Msa0681280:CDS | 45.0% | |
| TTGCTCTTGTTCAAGGTCGT+TGG | - | chr4_4:41435646-41435665 | Msa0681280:CDS | 45.0% | |
| GTTCAAGGTCGTTGGAGATT+TGG | - | chr4_4:41435654-41435673 | Msa0681280:CDS | 45.0% | |
| !! | TTGTTTGACTTGGGTTAGCC+CGG | - | chr4_4:41436139-41436158 | Msa0681280:CDS | 45.0% |
| AAACCCTTCAATCACGGGTA+GGG | - | chr4_4:41436187-41436206 | Msa0681280:CDS | 45.0% | |
| ACTAAATATCATAGCCGCCC+AGG | + | chr4_4:41436398-41436417 | None:intergenic | 45.0% | |
| AAGGTCGACCATAAGACACA+TGG | + | chr4_4:41437167-41437186 | None:intergenic | 45.0% | |
| !! | GTTGAAGTGTCGGCAAGAAA+GGG | + | chr4_4:41437191-41437210 | None:intergenic | 45.0% |
| !! | AGTTGAAGTGTCGGCAAGAA+AGG | + | chr4_4:41437192-41437211 | None:intergenic | 45.0% |
| CATTACAGTGGCCAACCAAA+AGG | + | chr4_4:41437502-41437521 | None:intergenic | 45.0% | |
| !! | CTTTTGGTTGGCCACTGTAA+TGG | - | chr4_4:41437500-41437519 | Msa0681280:intron | 45.0% |
| TGGATTCGAGCCCACATATT+TGG | - | chr4_4:41437900-41437919 | Msa0681280:intron | 45.0% | |
| GACGATGCAGCCAAATATGT+GGG | + | chr4_4:41437913-41437932 | None:intergenic | 45.0% | |
| AGACGATGCAGCCAAATATG+TGG | + | chr4_4:41437914-41437933 | None:intergenic | 45.0% | |
| AGCAGCAATTCGCCAAATAC+CGG | + | chr4_4:41438064-41438083 | None:intergenic | 45.0% | |
| CTATCAATGAAGCAGGAGGA+TGG | - | chr4_4:41438082-41438101 | Msa0681280:intron | 45.0% | |
| ! | CTGAATGCTCTCAGAGTACT+TGG | + | chr4_4:41438453-41438472 | None:intergenic | 45.0% |
| ! | TCTTTTCCGCAAAATGGCGA+TGG | - | chr4_4:41438509-41438528 | Msa0681280:intron | 45.0% |
| GTGTGCAGAAAGTGAAGTTC+TGG | - | chr4_4:41438650-41438669 | Msa0681280:intron | 45.0% | |
| CAGGAACCAAAATTGTGAGG+GGG | + | chr4_4:41438762-41438781 | None:intergenic | 45.0% | |
| CCTCAGGAACCAAAATTGTG+AGG | + | chr4_4:41438765-41438784 | None:intergenic | 45.0% | |
| !!! | CCTCACAATTTTGGTTCCTG+AGG | - | chr4_4:41438762-41438781 | Msa0681280:intron | 45.0% |
| ! | TGTTCCGACTGAGTTGAGAA+TGG | + | chr4_4:41438833-41438852 | None:intergenic | 45.0% |
| ! | CAATTAGGGTCGCTTTGGTA+CGG | + | chr4_4:41439029-41439048 | None:intergenic | 45.0% |
| CAAACCAATTAGGGTCGCTT+TGG | + | chr4_4:41439034-41439053 | None:intergenic | 45.0% | |
| TGGGTTGTGACCGAAAAACT+TGG | - | chr4_4:41439078-41439097 | Msa0681280:CDS | 45.0% | |
| CTCACACTAGCTGGCATTAA+AGG | - | chr4_4:41439312-41439331 | Msa0681280:intron | 45.0% | |
| TTCTGTAAGGCTCATGTGCA+TGG | + | chr4_4:41439438-41439457 | None:intergenic | 45.0% | |
| GGATGCTATGACTATGTGCA+TGG | - | chr4_4:41439753-41439772 | Msa0681280:CDS | 45.0% | |
| !!! | TTAGATTTTTTTTAATTAAA+AGG | - | chr4_4:41435308-41435327 | Msa0681280:intron | 5.0% |
| !!! | TAGATTTTTTTTAATTAAAA+GGG | - | chr4_4:41435309-41435328 | Msa0681280:intron | 5.0% |
| !!! | TTTTTTTAGTAATAAAATTA+AGG | - | chr4_4:41437655-41437674 | Msa0681280:intron | 5.0% |
| !!! | TTTTTTTTTTTTATAGATTT+TGG | + | chr4_4:41440089-41440108 | None:intergenic | 5.0% |
| ! | GAGAGAGAGAGAGTGTGAGA+AGG | + | chr4_4:41434175-41434194 | None:intergenic | 50.0% |
| GGGCTAACCCAAGTCAAACA+AGG | + | chr4_4:41436140-41436159 | None:intergenic | 50.0% | |
| !! | ACTTGGGTTAGCCCGGTTTA+GGG | - | chr4_4:41436146-41436165 | Msa0681280:CDS | 50.0% |
| TTAGCCCGGTTTAGGGGAAT+GGG | - | chr4_4:41436153-41436172 | Msa0681280:CDS | 50.0% | |
| CAAACCCTTCAATCACGGGT+AGG | - | chr4_4:41436186-41436205 | Msa0681280:CDS | 50.0% | |
| GTTCCCTACCCGTGATTGAA+GGG | + | chr4_4:41436193-41436212 | None:intergenic | 50.0% | |
| TGTTCCCTACCCGTGATTGA+AGG | + | chr4_4:41436194-41436213 | None:intergenic | 50.0% | |
| GGGTAGCACCATGTGTCTTA+TGG | - | chr4_4:41437156-41437175 | Msa0681280:intron | 50.0% | |
| !! | AGTGTCGGCAAGAAAGGGTA+AGG | + | chr4_4:41437186-41437205 | None:intergenic | 50.0% |
| AATCTTAATGCAGGGACGGC+CGG | - | chr4_4:41438042-41438061 | Msa0681280:intron | 50.0% | |
| GCTGCTATCAATGAAGCAGG+AGG | - | chr4_4:41438078-41438097 | Msa0681280:intron | 50.0% | |
| ! | TAAGACTTGCTCGAACAGCG+AGG | + | chr4_4:41438137-41438156 | None:intergenic | 50.0% |
| TCGCTGTTCGAGCAAGTCTT+AGG | - | chr4_4:41438136-41438155 | Msa0681280:intron | 50.0% | |
| CGCTGTTCGAGCAAGTCTTA+GGG | - | chr4_4:41438137-41438156 | Msa0681280:intron | 50.0% | |
| GCTGTTCGAGCAAGTCTTAG+GGG | - | chr4_4:41438138-41438157 | Msa0681280:intron | 50.0% | |
| TTCGAGCAAGTCTTAGGGGA+TGG | - | chr4_4:41438142-41438161 | Msa0681280:intron | 50.0% | |
| TTTGTACCTTGGAGACCTCC+AGG | - | chr4_4:41438170-41438189 | Msa0681280:intron | 50.0% | |
| GATTTACCTGGAGGTCTCCA+AGG | + | chr4_4:41438179-41438198 | None:intergenic | 50.0% | |
| TCAGATTCCAGCAGCACAGA+TGG | - | chr4_4:41438469-41438488 | Msa0681280:intron | 50.0% | |
| GAGCTACGATCTTGCGAACA+AGG | + | chr4_4:41438705-41438724 | None:intergenic | 50.0% | |
| TCGCAAGATCGTAGCTCACA+TGG | - | chr4_4:41438708-41438727 | Msa0681280:intron | 50.0% | |
| TCAACTCAGTCGGAACACCA+AGG | - | chr4_4:41438836-41438855 | Msa0681280:intron | 50.0% | |
| CGTACCAAAGCGACCCTAAT+TGG | - | chr4_4:41439027-41439046 | Msa0681280:CDS | 50.0% | |
| CACTTGTCACTCACACTAGC+TGG | - | chr4_4:41439303-41439322 | Msa0681280:intron | 50.0% | |
| TTTCGATTGGAGCGGCCTGT+GGG | - | chr4_4:41434809-41434828 | Msa0681280:CDS | 55.0% | |
| TGGATCACGAGTCGATCCGT+CGG | + | chr4_4:41434844-41434863 | None:intergenic | 55.0% | |
| !! | TCATAGTGTCGGTGGCTTGC+TGG | - | chr4_4:41436011-41436030 | Msa0681280:intron | 55.0% |
| !! | GACTTGGGTTAGCCCGGTTT+AGG | - | chr4_4:41436145-41436164 | Msa0681280:CDS | 55.0% |
| !! | CTTGGGTTAGCCCGGTTTAG+GGG | - | chr4_4:41436147-41436166 | Msa0681280:CDS | 55.0% |
| GTTAGCCCGGTTTAGGGGAA+TGG | - | chr4_4:41436152-41436171 | Msa0681280:CDS | 55.0% | |
| TGGACCCATTCCCCTAAACC+GGG | + | chr4_4:41436160-41436179 | None:intergenic | 55.0% | |
| GTGGACCCATTCCCCTAAAC+CGG | + | chr4_4:41436161-41436180 | None:intergenic | 55.0% | |
| !! | CACGTGGGAAGTGCCTTTGA+TGG | + | chr4_4:41437075-41437094 | None:intergenic | 55.0% |
| !! | CATCAAAGGCACTTCCCACG+TGG | - | chr4_4:41437073-41437092 | Msa0681280:intron | 55.0% |
| CACAAGACCATCTGTGCTGC+TGG | + | chr4_4:41438479-41438498 | None:intergenic | 55.0% | |
| ! | CAGCAGCACAGATGGTCTTG+TGG | - | chr4_4:41438477-41438496 | Msa0681280:intron | 55.0% |
| GTTTCGATTGGAGCGGCCTG+TGG | - | chr4_4:41434808-41434827 | Msa0681280:CDS | 60.0% | |
| CTGTGGGCTTTCATGGCCGA+CGG | - | chr4_4:41434825-41434844 | Msa0681280:CDS | 60.0% | |
| ATGCAGGGACGGCCGGTATT+TGG | - | chr4_4:41438049-41438068 | Msa0681280:intron | 60.0% | |
| GAGCGGCCTGTGGGCTTTCA+TGG | - | chr4_4:41434818-41434837 | Msa0681280:CDS | 65.0% | |
| CGTCGGCCATGAAAGCCCAC+AGG | + | chr4_4:41434827-41434846 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 41434170 | 41440478 | 41434170 | ID=Msa0681280;Name=Msa0681280 |
| chr4_4 | mRNA | 41434170 | 41440478 | 41434170 | ID=Msa0681280-mRNA-1;Parent=Msa0681280;Name=Msa0681280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|0.77|0.9|0.9|1|1|10|618|562 |
| chr4_4 | exon | 41434170 | 41434941 | 41434170 | ID=Msa0681280-mRNA-1:exon:9879;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41435443 | 41435676 | 41435443 | ID=Msa0681280-mRNA-1:exon:9878;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41435791 | 41435990 | 41435791 | ID=Msa0681280-mRNA-1:exon:9877;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41436100 | 41436213 | 41436100 | ID=Msa0681280-mRNA-1:exon:9876;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41436304 | 41436363 | 41436304 | ID=Msa0681280-mRNA-1:exon:9875;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41436457 | 41436593 | 41436457 | ID=Msa0681280-mRNA-1:exon:9874;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41436819 | 41436929 | 41436819 | ID=Msa0681280-mRNA-1:exon:9873;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41438973 | 41439225 | 41438973 | ID=Msa0681280-mRNA-1:exon:9872;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41439751 | 41439849 | 41439751 | ID=Msa0681280-mRNA-1:exon:9871;Parent=Msa0681280-mRNA-1 |
| chr4_4 | exon | 41439977 | 41440478 | 41439977 | ID=Msa0681280-mRNA-1:exon:9870;Parent=Msa0681280-mRNA-1 |
| chr4_4 | five_prime_UTR | 41440304 | 41440478 | 41440304 | ID=Msa0681280-mRNA-1:five_prime_utr;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41439977 | 41440303 | 41439977 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41439751 | 41439849 | 41439751 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41438973 | 41439225 | 41438973 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41436819 | 41436929 | 41436819 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41436457 | 41436593 | 41436457 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41436304 | 41436363 | 41436304 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41436100 | 41436213 | 41436100 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41435791 | 41435990 | 41435791 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41435443 | 41435676 | 41435443 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | CDS | 41434788 | 41434941 | 41434788 | ID=Msa0681280-mRNA-1:cds;Parent=Msa0681280-mRNA-1 |
| chr4_4 | three_prime_UTR | 41434170 | 41434787 | 41434170 | ID=Msa0681280-mRNA-1:three_prime_utr;Parent=Msa0681280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
