Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681260 | XP_003606273.1 | 95.907 | 562 | 3 | 1 | 1 | 562 | 1 | 542 | 0.0 | 1112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681260 | sp|Q9FNI7|CSLA2_ARATH | 76.250 | 560 | 99 | 4 | 5 | 562 | 5 | 532 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681260 | G7JM38 | 95.907 | 562 | 3 | 1 | 1 | 562 | 1 | 542 | 0.0 | 1112 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039790 | Msa0681260 | 0.804965 | 1.676793e-49 | -8.615850e-47 |
| Msa0054880 | Msa0681260 | 0.805893 | 1.071259e-49 | -8.615850e-47 |
| Msa0081520 | Msa0681260 | 0.826070 | 3.319744e-54 | -8.615850e-47 |
| Msa0623900 | Msa0681260 | 0.959725 | 9.270811e-118 | -8.615850e-47 |
| Msa0623910 | Msa0681260 | 0.935431 | 8.568529e-97 | -8.615850e-47 |
| Msa0626450 | Msa0681260 | 0.808296 | 3.321498e-50 | -8.615850e-47 |
| Msa0626490 | Msa0681260 | 0.810673 | 1.025277e-50 | -8.615850e-47 |
| Msa0640840 | Msa0681260 | 0.810025 | 1.415156e-50 | -8.615850e-47 |
| Msa0664600 | Msa0681260 | 0.805686 | 1.184194e-49 | -8.615850e-47 |
| Msa0681260 | Msa0681280 | 0.998375 | 2.775060e-263 | -8.615850e-47 |
| Msa0681260 | Msa0703950 | 0.813368 | 2.651328e-51 | -8.615850e-47 |
| Msa0681260 | Msa0711400 | 0.833654 | 4.710165e-56 | -8.615850e-47 |
| Msa0681260 | Msa0751870 | 0.807516 | 4.866353e-50 | -8.615850e-47 |
| Msa0681260 | Msa0880270 | 0.811178 | 7.970503e-51 | -8.615850e-47 |
| Msa0681260 | Msa0930450 | 0.819241 | 1.287543e-52 | -8.615850e-47 |
| Msa0681260 | Msa0981320 | 0.826326 | 2.884761e-54 | -8.615850e-47 |
| Msa0681260 | Msa1072960 | 0.825832 | 3.779930e-54 | -8.615850e-47 |
| Msa0681260 | Msa1113340 | 0.809894 | 1.510093e-50 | -8.615850e-47 |
| Msa0681260 | Msa1160910 | 0.822461 | 2.340270e-53 | -8.615850e-47 |
| Msa0681260 | Msa1173330 | 0.821762 | 3.398770e-53 | -8.615850e-47 |
| Msa0681260 | Msa1174840 | 0.826137 | 3.199389e-54 | -8.615850e-47 |
| Msa0681260 | Msa1199820 | 0.801609 | 8.307506e-49 | -8.615850e-47 |
| Msa0681260 | Msa1206230 | 0.813220 | 2.857553e-51 | -8.615850e-47 |
| Msa0681260 | Msa1232710 | 0.809433 | 1.897007e-50 | -8.615850e-47 |
| Msa0681260 | Msa1297970 | 0.811654 | 6.285200e-51 | -8.615850e-47 |
| Msa0681260 | Msa1306640 | 0.809235 | 2.091614e-50 | -8.615850e-47 |
| Msa0681260 | Msa1307570 | 0.811773 | 5.920327e-51 | -8.615850e-47 |
| Msa0681260 | Msa1313300 | 0.813191 | 2.900621e-51 | -8.615850e-47 |
| Msa0681260 | Msa1356830 | 0.802128 | 6.497274e-49 | -8.615850e-47 |
| Msa0681260 | Msa1371910 | 0.845135 | 4.904332e-59 | -8.615850e-47 |
| Msa0681260 | Msa1437940 | 0.829545 | 4.847634e-55 | -8.615850e-47 |
| Msa0681260 | Msa1440960 | 0.805481 | 1.307672e-49 | -8.615850e-47 |
| Msa0681260 | Msa1449930 | 0.846790 | 1.740977e-59 | -8.615850e-47 |
| Msa0136650 | Msa0681260 | 0.804929 | 1.706062e-49 | -8.615850e-47 |
| Msa0173890 | Msa0681260 | 0.815759 | 7.839499e-52 | -8.615850e-47 |
| Msa0174450 | Msa0681260 | 0.825428 | 4.713281e-54 | -8.615850e-47 |
| Msa0180930 | Msa0681260 | 0.806492 | 8.011504e-50 | -8.615850e-47 |
| Msa0196190 | Msa0681260 | 0.807243 | 5.560237e-50 | -8.615850e-47 |
| Msa0222560 | Msa0681260 | 0.827472 | 1.535317e-54 | -8.615850e-47 |
| Msa0375640 | Msa0681260 | 0.838618 | 2.583789e-57 | -8.615850e-47 |
| Msa0390970 | Msa0681260 | 0.809253 | 2.073488e-50 | -8.615850e-47 |
| Msa0424160 | Msa0681260 | 0.842979 | 1.856876e-58 | -8.615850e-47 |
| Msa0430260 | Msa0681260 | 0.804939 | 1.697808e-49 | -8.615850e-47 |
| Msa0435370 | Msa0681260 | 0.807969 | 3.897692e-50 | -8.615850e-47 |
| Msa0435420 | Msa0681260 | 0.828930 | 6.834388e-55 | -8.615850e-47 |
| Msa0435570 | Msa0681260 | 0.824915 | 6.229956e-54 | -8.615850e-47 |
| Msa0249540 | Msa0681260 | 0.801247 | 9.852460e-49 | -8.615850e-47 |
| Msa0301820 | Msa0681260 | 0.811326 | 7.404863e-51 | -8.615850e-47 |
| Msa0307270 | Msa0681260 | 0.809823 | 1.563767e-50 | -8.615850e-47 |
| Msa0307280 | Msa0681260 | 0.812185 | 4.815136e-51 | -8.615850e-47 |
| Msa0500380 | Msa0681260 | 0.812799 | 3.534083e-51 | -8.615850e-47 |
| Msa0515800 | Msa0681260 | 0.832747 | 7.923571e-56 | -8.615850e-47 |
| Msa0546110 | Msa0681260 | 0.892436 | 1.590149e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681260 | MtrunA17_Chr4g0027221 | 95.907 | 562 | 3 | 1 | 1 | 562 | 1 | 542 | 0.0 | 1112 |
| Msa0681260 | MtrunA17_Chr7g0265711 | 64.801 | 554 | 161 | 4 | 10 | 562 | 9 | 529 | 0.0 | 775 |
| Msa0681260 | MtrunA17_Chr1g0179441 | 64.630 | 540 | 158 | 2 | 23 | 562 | 14 | 520 | 0.0 | 753 |
| Msa0681260 | MtrunA17_Chr1g0198111 | 65.511 | 548 | 155 | 4 | 16 | 562 | 13 | 527 | 0.0 | 737 |
| Msa0681260 | MtrunA17_Chr1g0179381 | 60.870 | 552 | 181 | 4 | 12 | 562 | 2 | 519 | 0.0 | 722 |
| Msa0681260 | MtrunA17_Chr1g0179421 | 60.688 | 552 | 183 | 4 | 12 | 562 | 2 | 520 | 0.0 | 720 |
| Msa0681260 | MtrunA17_Chr7g0264621 | 53.381 | 562 | 224 | 4 | 1 | 562 | 4 | 527 | 0.0 | 636 |
| Msa0681260 | MtrunA17_Chr1g0179391 | 65.230 | 348 | 101 | 1 | 141 | 488 | 1 | 328 | 1.60e-178 | 506 |
| Msa0681260 | MtrunA17_Chr4g0000581 | 44.420 | 457 | 222 | 6 | 64 | 514 | 202 | 632 | 2.25e-133 | 404 |
| Msa0681260 | MtrunA17_Chr6g0451381 | 41.929 | 477 | 241 | 6 | 26 | 495 | 138 | 585 | 3.06e-133 | 403 |
| Msa0681260 | MtrunA17_Chr3g0135191 | 43.833 | 454 | 222 | 5 | 33 | 483 | 180 | 603 | 8.09e-130 | 395 |
| Msa0681260 | MtrunA17_Chr3g0139081 | 39.677 | 557 | 283 | 9 | 28 | 559 | 155 | 683 | 2.25e-129 | 394 |
| Msa0681260 | MtrunA17_Chr8g0339101 | 37.568 | 551 | 304 | 4 | 28 | 562 | 175 | 701 | 2.28e-122 | 376 |
| Msa0681260 | MtrunA17_Chr1g0179401 | 55.303 | 132 | 58 | 1 | 12 | 142 | 2 | 133 | 3.00e-46 | 159 |
| Msa0681260 | MtrunA17_Chr4g0064791 | 39.850 | 133 | 73 | 2 | 73 | 198 | 68 | 200 | 1.49e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0681260 | AT5G22740.1 | 76.250 | 560 | 99 | 4 | 5 | 562 | 5 | 532 | 0.0 | 877 |
| Msa0681260 | AT5G03760.1 | 66.426 | 554 | 152 | 5 | 10 | 562 | 10 | 530 | 0.0 | 773 |
| Msa0681260 | AT1G23480.1 | 58.577 | 548 | 193 | 4 | 16 | 562 | 39 | 553 | 0.0 | 686 |
| Msa0681260 | AT1G23480.2 | 58.577 | 548 | 193 | 4 | 16 | 562 | 39 | 553 | 0.0 | 686 |
| Msa0681260 | AT1G23480.3 | 60.700 | 514 | 168 | 4 | 50 | 562 | 1 | 481 | 0.0 | 674 |
| Msa0681260 | AT4G13410.1 | 55.455 | 550 | 206 | 4 | 12 | 560 | 26 | 537 | 0.0 | 666 |
| Msa0681260 | AT5G16190.3 | 57.463 | 536 | 192 | 3 | 26 | 560 | 4 | 504 | 0.0 | 648 |
| Msa0681260 | AT2G35650.1 | 54.991 | 531 | 203 | 3 | 19 | 549 | 42 | 536 | 0.0 | 638 |
| Msa0681260 | AT1G24070.1 | 55.388 | 529 | 202 | 3 | 32 | 560 | 58 | 552 | 0.0 | 631 |
| Msa0681260 | AT5G16190.4 | 54.130 | 569 | 192 | 4 | 26 | 560 | 4 | 537 | 0.0 | 630 |
| Msa0681260 | AT2G35650.4 | 56.600 | 500 | 181 | 3 | 50 | 549 | 1 | 464 | 0.0 | 620 |
| Msa0681260 | AT2G35650.2 | 56.600 | 500 | 181 | 3 | 50 | 549 | 1 | 464 | 0.0 | 620 |
| Msa0681260 | AT5G16190.2 | 61.790 | 458 | 155 | 1 | 26 | 483 | 4 | 441 | 0.0 | 608 |
| Msa0681260 | AT5G16190.1 | 58.996 | 478 | 160 | 3 | 84 | 560 | 1 | 443 | 0.0 | 599 |
| Msa0681260 | AT3G56000.1 | 52.830 | 530 | 210 | 6 | 35 | 559 | 29 | 523 | 0.0 | 582 |
| Msa0681260 | AT4G16590.1 | 49.814 | 538 | 202 | 4 | 23 | 560 | 51 | 520 | 0.0 | 563 |
| Msa0681260 | AT1G23480.4 | 60.808 | 421 | 132 | 3 | 142 | 562 | 21 | 408 | 0.0 | 548 |
| Msa0681260 | AT4G13410.3 | 57.488 | 414 | 138 | 3 | 147 | 560 | 1 | 376 | 0.0 | 520 |
| Msa0681260 | AT2G35650.3 | 56.511 | 407 | 141 | 3 | 143 | 549 | 8 | 378 | 2.67e-174 | 498 |
| Msa0681260 | AT4G13410.2 | 56.589 | 387 | 140 | 3 | 12 | 397 | 26 | 385 | 2.00e-164 | 473 |
| Msa0681260 | AT1G24070.2 | 57.181 | 376 | 129 | 4 | 32 | 407 | 58 | 401 | 2.30e-155 | 451 |
| Msa0681260 | AT4G31590.1 | 42.739 | 482 | 246 | 6 | 6 | 483 | 138 | 593 | 3.97e-137 | 414 |
| Msa0681260 | AT3G28180.1 | 45.374 | 454 | 212 | 6 | 33 | 483 | 145 | 565 | 2.48e-136 | 411 |
| Msa0681260 | AT3G07330.1 | 39.273 | 550 | 298 | 3 | 28 | 562 | 153 | 681 | 6.07e-136 | 410 |
| Msa0681260 | AT3G07330.2 | 39.273 | 550 | 298 | 3 | 28 | 562 | 153 | 681 | 6.07e-136 | 410 |
| Msa0681260 | AT2G24630.1 | 38.087 | 575 | 309 | 9 | 6 | 559 | 138 | 686 | 2.50e-131 | 399 |
| Msa0681260 | AT2G24630.2 | 38.087 | 575 | 309 | 9 | 6 | 559 | 138 | 686 | 2.50e-131 | 399 |
| Msa0681260 | AT4G07960.1 | 39.194 | 546 | 286 | 8 | 33 | 562 | 183 | 698 | 4.32e-122 | 375 |
| Msa0681260 | AT4G07960.2 | 39.194 | 546 | 286 | 8 | 33 | 562 | 183 | 698 | 4.32e-122 | 375 |
Find 145 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGACCTTTCCATAAATT+TGG | 0.095743 | 4_4:+41399794 | None:intergenic |
| CACCTCTTGTTTCTCTAATT+TGG | 0.108542 | 4_4:+41403504 | None:intergenic |
| ACGACACTTACGAAACTTTA+AGG | 0.113447 | 4_4:+41399104 | None:intergenic |
| TTACGAAACTTTAAGGATTT+TGG | 0.126384 | 4_4:+41399111 | None:intergenic |
| AAATTATTTGTCACAAATTA+TGG | 0.147142 | 4_4:+41398762 | None:intergenic |
| CAAACATCGACCGTTGAATT+TGG | 0.165277 | 4_4:-41400680 | Msa0681260:CDS |
| ACCAAATCTACAGTTAATTT+AGG | 0.179982 | 4_4:-41399006 | Msa0681260:three_prime_UTR |
| ATAATTTGTGACAAATAATT+TGG | 0.181703 | 4_4:-41398760 | Msa0681260:three_prime_UTR |
| GAAAACAAGATCCAAATTTA+TGG | 0.196456 | 4_4:-41399805 | Msa0681260:CDS |
| CTGAGGTTCATGTTCCAATT+TGG | 0.199327 | 4_4:-41400205 | Msa0681260:CDS |
| TTTCATGGAAAGAGTTTATA+TGG | 0.210110 | 4_4:-41404476 | Msa0681260:CDS |
| CTAATTGGTTTGCTAGAATA+TGG | 0.211369 | 4_4:-41399942 | Msa0681260:CDS |
| CATATTCTAGCAAACCAATT+AGG | 0.216535 | 4_4:+41399943 | None:intergenic |
| CGTACCAAAGCGACCCTAAT+TGG | 0.229974 | 4_4:-41399957 | Msa0681260:CDS |
| TGAGGTTCATGTTCCAATTT+GGG | 0.231288 | 4_4:-41400204 | Msa0681260:CDS |
| TTCCTTTACTTGCCCATCTT+TGG | 0.241277 | 4_4:+41403540 | None:intergenic |
| TCAGCTACTCATGCTTTCTT+TGG | 0.243047 | 4_4:-41401184 | Msa0681260:CDS |
| ATGCAGGGACGGCCGGTATT+TGG | 0.246809 | 4_4:-41400934 | Msa0681260:intron |
| ACCTTCTCAATTGTAGGATT+TGG | 0.248263 | 4_4:-41399168 | Msa0681260:CDS |
| CCAAATCTACAGTTAATTTA+GGG | 0.250194 | 4_4:-41399005 | Msa0681260:three_prime_UTR |
| GAGCGGCCTGTGGGCTTTCA+TGG | 0.256933 | 4_4:-41404164 | Msa0681260:CDS |
| TCGCTGTTCGAGCAAGTCTT+AGG | 0.257915 | 4_4:-41400847 | Msa0681260:CDS |
| CATGAGCAGGCTAAATTTCT+TGG | 0.265023 | 4_4:-41399286 | Msa0681260:intron |
| AAATCTCAACCGCTGAATTA+AGG | 0.277787 | 4_4:+41400651 | None:intergenic |
| CCCTAAATTAACTGTAGATT+TGG | 0.280944 | 4_4:+41399005 | None:intergenic |
| CCTTGAACAAGAGCAATTTC+AGG | 0.303932 | 4_4:+41403344 | None:intergenic |
| GACTCTGGTATATAAACTTT+AGG | 0.307674 | 4_4:+41404622 | None:intergenic |
| CATGCTTTCTTTGGCTTCAA+TGG | 0.310696 | 4_4:-41401175 | Msa0681260:intron |
| TAGTTGTGCGCAAAGATATC+TGG | 0.325326 | 4_4:-41398584 | Msa0681260:three_prime_UTR |
| CAAGTCAAATTAAGATGATA+TGG | 0.326108 | 4_4:-41404576 | Msa0681260:CDS |
| CCTGAAATTGCTCTTGTTCA+AGG | 0.326116 | 4_4:-41403344 | Msa0681260:CDS |
| TGTAAAGAGAAAGAAATTAA+AGG | 0.330426 | 4_4:-41404695 | Msa0681260:five_prime_UTR |
| GTTCAAGGTCGTTGGAGATT+TGG | 0.339973 | 4_4:-41403329 | Msa0681260:intron |
| ATTGATGACAATGAAAATCT+TGG | 0.341186 | 4_4:+41398966 | None:intergenic |
| ACCTTAACCTTCTCAATTGT+AGG | 0.346965 | 4_4:-41399174 | Msa0681260:CDS |
| TCTGTTTGTTTCACATTCAT+AGG | 0.354373 | 4_4:-41404748 | Msa0681260:five_prime_UTR |
| CAGAACAACAGTTGAAGATA+TGG | 0.365102 | 4_4:-41400873 | Msa0681260:CDS |
| AAATGGCGATGGAGATTATA+AGG | 0.367253 | 4_4:-41400464 | Msa0681260:CDS |
| AAGAATGCAAGAGATGTCTT+TGG | 0.370356 | 4_4:-41401239 | Msa0681260:CDS |
| TCATATTTATAACGTTGTTC+AGG | 0.375349 | 4_4:+41404415 | None:intergenic |
| ATGTAAACAGCTCCCCAAAT+TGG | 0.378565 | 4_4:+41400191 | None:intergenic |
| ATTGTAGGATTTGGTTATGT+TGG | 0.379370 | 4_4:-41399159 | Msa0681260:CDS |
| TTCTACTGACCCTGTTGTTA+AGG | 0.383212 | 4_4:-41404106 | Msa0681260:intron |
| CGCTGTTCGAGCAAGTCTTA+GGG | 0.385066 | 4_4:-41400846 | Msa0681260:CDS |
| CTGAATGCTCTCAGAGTACT+TGG | 0.388265 | 4_4:+41400534 | None:intergenic |
| TCCTACAATTGAGAAGGTTA+AGG | 0.401066 | 4_4:+41399173 | None:intergenic |
| ATATTCTAGCAAACCAATTA+GGG | 0.403344 | 4_4:+41399944 | None:intergenic |
| TTGAGAAGGTTAAGGTTTGA+AGG | 0.410807 | 4_4:+41399181 | None:intergenic |
| GGAATTTGAACAAGAACAAC+AGG | 0.417109 | 4_4:+41404352 | None:intergenic |
| ATGGCTCTTCTAAGAAAATC+AGG | 0.417142 | 4_4:+41403386 | None:intergenic |
| CAGTAGAATCATCAAGTACT+TGG | 0.417324 | 4_4:+41404121 | None:intergenic |
| GTGTGCAGAAAGTGAAGTTC+TGG | 0.417439 | 4_4:-41400334 | Msa0681260:intron |
| TATGGAAAACTAATAAATAA+AGG | 0.423758 | 4_4:+41398780 | None:intergenic |
| CACAAGACCATCTGTGCTGC+TGG | 0.427142 | 4_4:+41400508 | None:intergenic |
| TTCTTTGACAACATTATTTG+TGG | 0.432930 | 4_4:-41398674 | Msa0681260:three_prime_UTR |
| TTCACAGTTGAGCAAGAAGT+TGG | 0.434090 | 4_4:-41401208 | Msa0681260:CDS |
| GTAAAGAGAAAGAAATTAAA+GGG | 0.434123 | 4_4:-41404694 | Msa0681260:five_prime_UTR |
| CAGGTTTATAAGGTTTCGAT+TGG | 0.436880 | 4_4:-41404186 | Msa0681260:CDS |
| AATGCAGCAAATGGTGGAAA+TGG | 0.437156 | 4_4:-41403567 | Msa0681260:intron |
| CTTCTTGCTCAACTGTGAAA+TGG | 0.437858 | 4_4:+41401212 | None:intergenic |
| CAAACCAATTAGGGTCGCTT+TGG | 0.439173 | 4_4:+41399953 | None:intergenic |
| AAAGGATCCAATAGAACAAA+AGG | 0.455383 | 4_4:+41400003 | None:intergenic |
| TTGCTCTTGTTCAAGGTCGT+TGG | 0.464965 | 4_4:-41403337 | Msa0681260:CDS |
| TAATTGGTTTGCTAGAATAT+GGG | 0.467443 | 4_4:-41399941 | Msa0681260:CDS |
| AGGTTAAGGTTTGAAGGAAG+AGG | 0.467765 | 4_4:+41399187 | None:intergenic |
| TCAGGATTACCAACAAGAAA+AGG | 0.469315 | 4_4:+41403362 | None:intergenic |
| ACCTCTCTTTCATTGAACAT+TGG | 0.472020 | 4_4:+41404331 | None:intergenic |
| TTTGTACCTTGGAGACCTCC+AGG | 0.476674 | 4_4:-41400813 | Msa0681260:intron |
| TTCATGGAAAGAGTTTATAT+GGG | 0.483092 | 4_4:-41404475 | Msa0681260:CDS |
| AATATGGGAGGGCTAATGAA+TGG | 0.486275 | 4_4:-41399926 | Msa0681260:CDS |
| CTTCAAGATGATGAAGAACT+TGG | 0.491348 | 4_4:-41404388 | Msa0681260:CDS |
| ATTTGTGACAAATAATTTGG+TGG | 0.493699 | 4_4:-41398757 | Msa0681260:three_prime_UTR |
| TCTTTGACAACATTATTTGT+GGG | 0.499035 | 4_4:-41398673 | Msa0681260:three_prime_UTR |
| ATATGGGAGGGCTAATGAAT+GGG | 0.499596 | 4_4:-41399925 | Msa0681260:CDS |
| TTTCGATTGGAGCGGCCTGT+GGG | 0.500405 | 4_4:-41404173 | Msa0681260:CDS |
| GTTTCGATTGGAGCGGCCTG+TGG | 0.501018 | 4_4:-41404174 | Msa0681260:CDS |
| CTTTAGACTGTTAGATAGTG+TGG | 0.501883 | 4_4:-41398858 | Msa0681260:three_prime_UTR |
| AGCAGCAATTCGCCAAATAC+CGG | 0.503544 | 4_4:+41400922 | None:intergenic |
| CTCCTCTACAAAGTACAAGA+AGG | 0.508959 | 4_4:-41399062 | Msa0681260:three_prime_UTR |
| AAGACATGACATTCTCGAAA+AGG | 0.511184 | 4_4:+41399985 | None:intergenic |
| AAGAAGATAGAAGTAATCAA+TGG | 0.520681 | 4_4:-41398942 | Msa0681260:three_prime_UTR |
| TGTTTACATTTCATTAGCAA+TGG | 0.522412 | 4_4:-41404509 | Msa0681260:CDS |
| AGGCTAAATTTCTTGGAGCT+AGG | 0.522894 | 4_4:-41399279 | Msa0681260:CDS |
| TCCCTTCTTGTACTTTGTAG+AGG | 0.524601 | 4_4:+41399060 | None:intergenic |
| TGCCAAAGATGGGCAAGTAA+AGG | 0.533260 | 4_4:-41403542 | Msa0681260:CDS |
| TCTACAGTTAATTTAGGGGA+AGG | 0.534022 | 4_4:-41399000 | Msa0681260:three_prime_UTR |
| AATCTTAATGCAGGGACGGC+CGG | 0.536598 | 4_4:-41400941 | Msa0681260:intron |
| CAAGATGATGAAGAACTTGG+TGG | 0.538757 | 4_4:-41404385 | Msa0681260:CDS |
| CAAATTGGAACATGAACCTC+AGG | 0.544374 | 4_4:+41400206 | None:intergenic |
| GAGCTACGATCTTGCGAACA+AGG | 0.545461 | 4_4:+41400282 | None:intergenic |
| AAAGCAGGTGCATTGAAAGA+AGG | 0.546072 | 4_4:-41403476 | Msa0681260:CDS |
| TGGAAATGGAATGCCAAAGA+TGG | 0.548465 | 4_4:-41403553 | Msa0681260:CDS |
| AAGTCAAATTAAGATGATAT+GGG | 0.549081 | 4_4:-41404575 | Msa0681260:CDS |
| CAATTAGGGTCGCTTTGGTA+CGG | 0.549734 | 4_4:+41399958 | None:intergenic |
| TTCGAGCAAGTCTTAGGGGA+TGG | 0.551876 | 4_4:-41400841 | Msa0681260:CDS |
| CTATCAATGAAGCAGGAGGA+TGG | 0.553186 | 4_4:-41400901 | Msa0681260:CDS |
| ATTGCTGCTATCAATGAAGC+AGG | 0.553711 | 4_4:-41400908 | Msa0681260:CDS |
| TGAGTTGAGAATGGTGATGA+TGG | 0.557907 | 4_4:+41400163 | None:intergenic |
| CTGTGGGCTTTCATGGCCGA+CGG | 0.558259 | 4_4:-41404157 | Msa0681260:CDS |
| AGTTCTTCATCATCTTGAAG+AGG | 0.559787 | 4_4:+41404391 | None:intergenic |
| CAAGATCCAAATTTATGGAA+AGG | 0.560045 | 4_4:-41399800 | Msa0681260:intron |
| GATTTACCTGGAGGTCTCCA+AGG | 0.562965 | 4_4:+41400807 | None:intergenic |
| CTCAGGAACCAAAATTGTGA+GGG | 0.566831 | 4_4:+41400223 | None:intergenic |
| TACTTTGTAGAGGAGAAACT+AGG | 0.570931 | 4_4:+41399070 | None:intergenic |
| ATTACCAACAAGAAAAGGAA+TGG | 0.571120 | 4_4:+41403367 | None:intergenic |
| TCCTCTACAAAGTACAAGAA+GGG | 0.574023 | 4_4:-41399061 | Msa0681260:three_prime_UTR |
| TAGTTCACTTGAAATGACTC+TGG | 0.578254 | 4_4:+41404607 | None:intergenic |
| GGATAAATTATGCACTCTTG+AGG | 0.579655 | 4_4:-41398736 | Msa0681260:three_prime_UTR |
| TCCAATGTTCAATGAAAGAG+AGG | 0.585758 | 4_4:-41404332 | Msa0681260:intron |
| TCAGATTCCAGCAGCACAGA+TGG | 0.587972 | 4_4:-41400515 | Msa0681260:CDS |
| CGATGTTTGACTATATCGAC+TGG | 0.589596 | 4_4:+41400694 | None:intergenic |
| ACCAAATCCTACAATTGAGA+AGG | 0.592924 | 4_4:+41399167 | None:intergenic |
| TTGGTTTGCTAGAATATGGG+AGG | 0.593945 | 4_4:-41399938 | Msa0681260:CDS |
| CTTCTAAGAAAATCAGGAGG+AGG | 0.594412 | 4_4:+41403392 | None:intergenic |
| ACAAGAGGTGGATACAAAGC+AGG | 0.594663 | 4_4:-41403491 | Msa0681260:CDS |
| AAGGTATAATCCAAATTCAA+CGG | 0.596113 | 4_4:+41400670 | None:intergenic |
| TTGAGAATGGTGATGATGGA+AGG | 0.598628 | 4_4:+41400167 | None:intergenic |
| GAGGTTCATGTTCCAATTTG+GGG | 0.599098 | 4_4:-41400203 | Msa0681260:CDS |
| TGGATTATACCTTAATTCAG+CGG | 0.604905 | 4_4:-41400660 | Msa0681260:intron |
| GCTGTTCGAGCAAGTCTTAG+GGG | 0.606955 | 4_4:-41400845 | Msa0681260:CDS |
| TGAATGAATGCAGCAAATGG+TGG | 0.612388 | 4_4:-41403573 | Msa0681260:intron |
| TGTTCCGACTGAGTTGAGAA+TGG | 0.616682 | 4_4:+41400154 | None:intergenic |
| CAGCAGCACAGATGGTCTTG+TGG | 0.617433 | 4_4:-41400507 | Msa0681260:CDS |
| ATCACCATTCTCAACTCAGT+CGG | 0.619321 | 4_4:-41400158 | Msa0681260:CDS |
| CGTCGGCCATGAAAGCCCAC+AGG | 0.620127 | 4_4:+41404158 | None:intergenic |
| TGGTTTGCTAGAATATGGGA+GGG | 0.620333 | 4_4:-41399937 | Msa0681260:CDS |
| GGAAATGGAATGCCAAAGAT+GGG | 0.629673 | 4_4:-41403552 | Msa0681260:CDS |
| TCGCAAGATCGTAGCTCACA+TGG | 0.630015 | 4_4:-41400276 | Msa0681260:CDS |
| CAAATTAGAGAAACAAGAGG+TGG | 0.630612 | 4_4:-41403503 | Msa0681260:CDS |
| CAAATCTACAGTTAATTTAG+GGG | 0.635764 | 4_4:-41399004 | Msa0681260:three_prime_UTR |
| CCTCAGGAACCAAAATTGTG+AGG | 0.640518 | 4_4:+41400222 | None:intergenic |
| GGATGCTATGACTATGTGCA+TGG | 0.646576 | 4_4:-41399231 | Msa0681260:CDS |
| TTATAAGGTTTCGATTGGAG+CGG | 0.647679 | 4_4:-41404181 | Msa0681260:CDS |
| AAGTAATCAATGGAGAACAA+AGG | 0.659534 | 4_4:-41398932 | Msa0681260:three_prime_UTR |
| TACCAAATTAGAGAAACAAG+AGG | 0.669909 | 4_4:-41403506 | Msa0681260:CDS |
| TTTGGAATACCTTAACAACA+GGG | 0.672446 | 4_4:+41404097 | None:intergenic |
| TCAGGAACCAAAATTGTGAG+GGG | 0.679056 | 4_4:+41400224 | None:intergenic |
| CAGGAACCAAAATTGTGAGG+GGG | 0.680810 | 4_4:+41400225 | None:intergenic |
| GCTGCTATCAATGAAGCAGG+AGG | 0.681209 | 4_4:-41400905 | Msa0681260:CDS |
| GATGGAGATTATAAGGAACA+AGG | 0.689212 | 4_4:-41400457 | Msa0681260:intron |
| TGGATCACGAGTCGATCCGT+CGG | 0.693005 | 4_4:+41404141 | None:intergenic |
| GCTCTTCTAAGAAAATCAGG+AGG | 0.701297 | 4_4:+41403389 | None:intergenic |
| TCAACTCAGTCGGAACACCA+AGG | 0.719213 | 4_4:-41400148 | Msa0681260:intron |
| TATGAATGTGAAACAAACAG+AGG | 0.730213 | 4_4:+41404750 | None:intergenic |
| TAAGACTTGCTCGAACAGCG+AGG | 0.744360 | 4_4:+41400849 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAAATGAAAAAACA+TGG | + | chr4_4:41399465-41399484 | None:intergenic | 10.0% |
| !!! | AAAATAAAAAAACTTTTGTT+GGG | + | chr4_4:41399557-41399576 | None:intergenic | 10.0% |
| !!! | AAAAATAAAAAAACTTTTGT+TGG | + | chr4_4:41399558-41399577 | None:intergenic | 10.0% |
| !!! | AAATCTAAATTATCAATTTT+GGG | + | chr4_4:41399654-41399673 | None:intergenic | 10.0% |
| !!! | AAAATCTAAATTATCAATTT+TGG | + | chr4_4:41399655-41399674 | None:intergenic | 10.0% |
| !!! | AGATTTTTTTTAATTAAAAG+GGG | - | chr4_4:41399668-41399687 | Msa0681260:intron | 10.0% |
| !!! | GTTTAATTTTTATATAATGT+CGG | - | chr4_4:41400074-41400093 | Msa0681260:intron | 10.0% |
| !! | GTTAATATAAAATTAAAAAG+TGG | - | chr4_4:41400603-41400622 | Msa0681260:intron | 10.0% |
| !!! | ATTAAATTAAGAAATAGTTT+TGG | + | chr4_4:41401606-41401625 | None:intergenic | 10.0% |
| !!! | GTTAGTTTATTTATTTATTT+AGG | - | chr4_4:41401707-41401726 | Msa0681260:intron | 10.0% |
| !! | TTCTATAATAATTCTAATTT+GGG | + | chr4_4:41403864-41403883 | None:intergenic | 10.0% |
| !! | ATTCTATAATAATTCTAATT+TGG | + | chr4_4:41403865-41403884 | None:intergenic | 10.0% |
| !!! | TTAACAAGTTTTGATTTTTA+GGG | - | chr4_4:41398620-41398639 | Msa0681260:three_prime_UTR | 15.0% |
| !!! | TTGGTAACTTTTTTTTTTTA+CGG | - | chr4_4:41399080-41399099 | Msa0681260:three_prime_UTR | 15.0% |
| !!! | AAAAATTTGACATGAATTTT+TGG | + | chr4_4:41399264-41399283 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTAATTAAAAGG+GGG | - | chr4_4:41399669-41399688 | Msa0681260:intron | 15.0% |
| !!! | AACTCTAATATTTTTTTTGA+AGG | + | chr4_4:41400875-41400894 | None:intergenic | 15.0% |
| !! | AAAAAAAAGTTAACATGTTT+AGG | - | chr4_4:41401306-41401325 | Msa0681260:intron | 15.0% |
| !!! | ACTTTTTTACTTTTATGTTT+TGG | + | chr4_4:41401976-41401995 | None:intergenic | 15.0% |
| !! | TTACTAAAAAAATTACACTA+AGG | + | chr4_4:41402004-41402023 | None:intergenic | 15.0% |
| !!! | GAAATTATGATTAAGTTTTT+TGG | + | chr4_4:41402945-41402964 | None:intergenic | 15.0% |
| !!! | ATTTTAATGATGTTTTGTTT+TGG | - | chr4_4:41402978-41402997 | Msa0681260:intron | 15.0% |
| !! | AATGAACTCATAATATTATA+AGG | - | chr4_4:41403882-41403901 | Msa0681260:intron | 15.0% |
| !!! | TTTACAGTTATATATTTTGT+TGG | - | chr4_4:41404536-41404555 | Msa0681260:CDS | 15.0% |
| !! | TATGGAAAACTAATAAATAA+AGG | + | chr4_4:41404563-41404582 | None:intergenic | 15.0% |
| !! | AAATTATTTGTCACAAATTA+TGG | + | chr4_4:41404581-41404600 | None:intergenic | 15.0% |
| !!! | ATAATTTGTGACAAATAATT+TGG | - | chr4_4:41404580-41404599 | Msa0681260:CDS | 15.0% |
| !! | AACTATAAAAACTAATTCAT+TGG | + | chr4_4:41404741-41404760 | None:intergenic | 15.0% |
| !!! | CTTAACAAGTTTTGATTTTT+AGG | - | chr4_4:41398619-41398638 | Msa0681260:three_prime_UTR | 20.0% |
| !!! | TAACAAGTTTTGATTTTTAG+GGG | - | chr4_4:41398621-41398640 | Msa0681260:three_prime_UTR | 20.0% |
| !! | TGTAAAGAGAAAGAAATTAA+AGG | - | chr4_4:41398645-41398664 | Msa0681260:three_prime_UTR | 20.0% |
| !! | GTAAAGAGAAAGAAATTAAA+GGG | - | chr4_4:41398646-41398665 | Msa0681260:three_prime_UTR | 20.0% |
| !! | AAGTCAAATTAAGATGATAT+GGG | - | chr4_4:41398765-41398784 | Msa0681260:three_prime_UTR | 20.0% |
| !! | TTCAAAAATGGTACAATTAA+TGG | + | chr4_4:41398805-41398824 | None:intergenic | 20.0% |
| !!! | TAATGTTGTTTTTCTATTAC+AGG | - | chr4_4:41399135-41399154 | Msa0681260:exon | 20.0% |
| !!! | TTTTCTATTACAGGTTTATA+AGG | - | chr4_4:41399144-41399163 | Msa0681260:exon | 20.0% |
| !! | TCTTAAAATGACATCAAATT+TGG | + | chr4_4:41399442-41399461 | None:intergenic | 20.0% |
| !!! | TAAATTATCAATTTTGGGAT+TGG | + | chr4_4:41399649-41399668 | None:intergenic | 20.0% |
| !! | CAATGTATCAAAATTAAACT+CGG | + | chr4_4:41400151-41400170 | None:intergenic | 20.0% |
| !!! | GTTTTTTATATTGATTGTGT+AGG | - | chr4_4:41400440-41400459 | Msa0681260:intron | 20.0% |
| !! | TTTAGTTGAACTTCTAAATT+TGG | - | chr4_4:41400769-41400788 | Msa0681260:intron | 20.0% |
| !! | AATTTGGCAAAAATATTATG+TGG | - | chr4_4:41400785-41400804 | Msa0681260:intron | 20.0% |
| !! | ATTTGGCAAAAATATTATGT+GGG | - | chr4_4:41400786-41400805 | Msa0681260:intron | 20.0% |
| !!! | AACTTTTTTTTTTTTTCCGA+AGG | + | chr4_4:41401297-41401316 | None:intergenic | 20.0% |
| !! | AAAAAAAGAAAATGGAACAA+GGG | - | chr4_4:41401356-41401375 | Msa0681260:intron | 20.0% |
| !! | TAGTAGAAAACTTTGATATT+TGG | + | chr4_4:41401406-41401425 | None:intergenic | 20.0% |
| !! | TCATTCATAATAATCATACT+TGG | - | chr4_4:41401627-41401646 | Msa0681260:intron | 20.0% |
| !! | TTAATAATACTAAGTAGTAG+TGG | - | chr4_4:41401683-41401702 | Msa0681260:intron | 20.0% |
| !! | ATAAAAATCATGTGTTTATG+TGG | - | chr4_4:41401806-41401825 | Msa0681260:intron | 20.0% |
| !! | TAAAAATCATGTGTTTATGT+GGG | - | chr4_4:41401807-41401826 | Msa0681260:intron | 20.0% |
| !!! | TTAACTTTAACTTTTTCACA+AGG | + | chr4_4:41401949-41401968 | None:intergenic | 20.0% |
| !! | TGTTATAGTAATATTGAGAA+TGG | - | chr4_4:41402041-41402060 | Msa0681260:intron | 20.0% |
| !! | TTCAAATTAATAAAGTGCAA+GGG | + | chr4_4:41402306-41402325 | None:intergenic | 20.0% |
| !!! | CTTACTAATGTTTCATATTT+TGG | - | chr4_4:41402376-41402395 | Msa0681260:intron | 20.0% |
| !! | AACAATAAAAAAGACAAATC+TGG | - | chr4_4:41403476-41403495 | Msa0681260:CDS | 20.0% |
| !!! | ATATTCTAAAATCTTCTGTA+AGG | + | chr4_4:41403807-41403826 | None:intergenic | 20.0% |
| !!! | CAATTTTGAAGTATCATATT+AGG | - | chr4_4:41403990-41404009 | Msa0681260:intron | 20.0% |
| !!! | AACAAGTTTTGATTTTTAGG+GGG | - | chr4_4:41398622-41398641 | Msa0681260:three_prime_UTR | 25.0% |
| ! | CAAGTCAAATTAAGATGATA+TGG | - | chr4_4:41398764-41398783 | Msa0681260:three_prime_UTR | 25.0% |
| ! | TAAACACAAGCATTCAAAAA+TGG | + | chr4_4:41398817-41398836 | None:intergenic | 25.0% |
| ! | TGTTTACATTTCATTAGCAA+TGG | - | chr4_4:41398831-41398850 | Msa0681260:three_prime_UTR | 25.0% |
| ! | TTTCATGGAAAGAGTTTATA+TGG | - | chr4_4:41398864-41398883 | Msa0681260:three_prime_UTR | 25.0% |
| ! | TTCATGGAAAGAGTTTATAT+GGG | - | chr4_4:41398865-41398884 | Msa0681260:three_prime_UTR | 25.0% |
| !!! | TATGGGTTTTGTTATCATTT+TGG | - | chr4_4:41398882-41398901 | Msa0681260:three_prime_UTR | 25.0% |
| ! | TCATATTTATAACGTTGTTC+AGG | + | chr4_4:41398928-41398947 | None:intergenic | 25.0% |
| !!! | GTTCTTTGTTTTTGTTCTTT+TGG | - | chr4_4:41399051-41399070 | Msa0681260:three_prime_UTR | 25.0% |
| !! | TTTGTTCTTTTGGATTCTTT+TGG | - | chr4_4:41399061-41399080 | Msa0681260:three_prime_UTR | 25.0% |
| !! | AAGCTTTTACAAAATTACTG+TGG | - | chr4_4:41399403-41399422 | Msa0681260:intron | 25.0% |
| !! | AATTTCTAGATTCATAGTGT+CGG | - | chr4_4:41400357-41400376 | Msa0681260:intron | 25.0% |
| ! | ATAATGTTACAAAAACAACC+TGG | - | chr4_4:41400734-41400753 | Msa0681260:intron | 25.0% |
| ! | TAATGTTACAAAAACAACCT+GGG | - | chr4_4:41400735-41400754 | Msa0681260:intron | 25.0% |
| ! | TTTGGCAAAAATATTATGTG+GGG | - | chr4_4:41400787-41400806 | Msa0681260:intron | 25.0% |
| !!! | ATGAATAGGTTATTTTGTCA+AGG | - | chr4_4:41400812-41400831 | Msa0681260:intron | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr4_4:41400965-41400984 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr4_4:41400964-41400983 | Msa0681260:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr4_4:41400977-41400996 | Msa0681260:intron | 25.0% |
| !!! | AACCACTTTTTGACAAATTT+TGG | + | chr4_4:41401062-41401081 | None:intergenic | 25.0% |
| ! | TATTATGTATAGATCCAATG+TGG | - | chr4_4:41401107-41401126 | Msa0681260:intron | 25.0% |
| ! | ATTATGTATAGATCCAATGT+GGG | - | chr4_4:41401108-41401127 | Msa0681260:intron | 25.0% |
| !! | TAAGTTAACATGTTTTCCTT+CGG | - | chr4_4:41401278-41401297 | Msa0681260:intron | 25.0% |
| ! | ACATGTTTAGGAAAAGAAAA+TGG | - | chr4_4:41401318-41401337 | Msa0681260:intron | 25.0% |
| ! | CAAAAAAAGAAAATGGAACA+AGG | - | chr4_4:41401355-41401374 | Msa0681260:intron | 25.0% |
| ! | AATAATAATATGTGTCAGTG+TGG | - | chr4_4:41401492-41401511 | Msa0681260:intron | 25.0% |
| ! | ATAATAATATGTGTCAGTGT+GGG | - | chr4_4:41401493-41401512 | Msa0681260:intron | 25.0% |
| ! | TGACATAAGAAATGAAAAGA+GGG | + | chr4_4:41401575-41401594 | None:intergenic | 25.0% |
| ! | CATAATAATCATACTTGGTT+AGG | - | chr4_4:41401632-41401651 | Msa0681260:intron | 25.0% |
| ! | CAAAAAGAAAAAGTCATCTT+TGG | + | chr4_4:41401834-41401853 | None:intergenic | 25.0% |
| !! | CTTTTTCTTTTTGTACCTTT+TGG | - | chr4_4:41401841-41401860 | Msa0681260:intron | 25.0% |
| ! | TTTACCTTACCTAATGATAT+TGG | - | chr4_4:41401909-41401928 | Msa0681260:intron | 25.0% |
| ! | ATTTGACGATGAAAAACATA+AGG | + | chr4_4:41402205-41402224 | None:intergenic | 25.0% |
| ! | CTTCAAATTAATAAAGTGCA+AGG | + | chr4_4:41402307-41402326 | None:intergenic | 25.0% |
| !!! | ATATTTTGGAATCTTAATGC+AGG | - | chr4_4:41402390-41402409 | Msa0681260:intron | 25.0% |
| !!! | TATTTTGGAATCTTAATGCA+GGG | - | chr4_4:41402391-41402410 | Msa0681260:intron | 25.0% |
| ! | TATTGAATAGAAGATTTACC+TGG | + | chr4_4:41402548-41402567 | None:intergenic | 25.0% |
| ! | ATAGATTGTGAATCATATGA+TGG | - | chr4_4:41402590-41402609 | Msa0681260:intron | 25.0% |
| ! | AAGGTATAATCCAAATTCAA+CGG | + | chr4_4:41402673-41402692 | None:intergenic | 25.0% |
| !! | TCATTGCAACTTTCTTTTAT+AGG | - | chr4_4:41402769-41402788 | Msa0681260:intron | 25.0% |
| ! | ATATTCTAGCAAACCAATTA+GGG | + | chr4_4:41403399-41403418 | None:intergenic | 25.0% |
| !!! | TAATTGGTTTGCTAGAATAT+GGG | - | chr4_4:41403399-41403418 | Msa0681260:CDS | 25.0% |
| !! | TTTCTTTTGAACTTTGACAT+TGG | + | chr4_4:41403519-41403538 | None:intergenic | 25.0% |
| ! | GAAAACAAGATCCAAATTTA+TGG | - | chr4_4:41403535-41403554 | Msa0681260:CDS | 25.0% |
| !! | CAAATTCTACATCTTCATTT+TGG | - | chr4_4:41403632-41403651 | Msa0681260:intron | 25.0% |
| ! | ATTAAAGGAATCTTGTAGTT+TGG | - | chr4_4:41403683-41403702 | Msa0681260:intron | 25.0% |
| ! | TCCTTCAATCATGAAATTAT+TGG | + | chr4_4:41403709-41403728 | None:intergenic | 25.0% |
| !!! | GTTATTTTGTTGTTTCTAGT+AGG | - | chr4_4:41403754-41403773 | Msa0681260:intron | 25.0% |
| !! | TAGGCTTGTAATTTTTGTTA+TGG | - | chr4_4:41404009-41404028 | Msa0681260:intron | 25.0% |
| !!! | TTACGAAACTTTAAGGATTT+TGG | + | chr4_4:41404232-41404251 | None:intergenic | 25.0% |
| ! | ACCAAATCTACAGTTAATTT+AGG | - | chr4_4:41404334-41404353 | Msa0681260:CDS | 25.0% |
| ! | CCAAATCTACAGTTAATTTA+GGG | - | chr4_4:41404335-41404354 | Msa0681260:CDS | 25.0% |
| ! | CAAATCTACAGTTAATTTAG+GGG | - | chr4_4:41404336-41404355 | Msa0681260:CDS | 25.0% |
| !! | ATTGATGACAATGAAAATCT+TGG | + | chr4_4:41404377-41404396 | None:intergenic | 25.0% |
| ! | AAGAAGATAGAAGTAATCAA+TGG | - | chr4_4:41404398-41404417 | Msa0681260:CDS | 25.0% |
| !!! | TTTTGTTTGCATAGATTGTT+TGG | - | chr4_4:41404506-41404525 | Msa0681260:CDS | 25.0% |
| ! | ATTTGTGACAAATAATTTGG+TGG | - | chr4_4:41404583-41404602 | Msa0681260:CDS | 25.0% |
| ! | TTCTTTGACAACATTATTTG+TGG | - | chr4_4:41404666-41404685 | Msa0681260:five_prime_UTR | 25.0% |
| ! | TCTTTGACAACATTATTTGT+GGG | - | chr4_4:41404667-41404686 | Msa0681260:five_prime_UTR | 25.0% |
| TATGAATGTGAAACAAACAG+AGG | + | chr4_4:41398593-41398612 | None:intergenic | 30.0% | |
| TCTGTTTGTTTCACATTCAT+AGG | - | chr4_4:41398592-41398611 | Msa0681260:three_prime_UTR | 30.0% | |
| GACTCTGGTATATAAACTTT+AGG | + | chr4_4:41398721-41398740 | None:intergenic | 30.0% | |
| !!! | TCATTTTGGTTAAGCTCTTT+TGG | - | chr4_4:41398896-41398915 | Msa0681260:three_prime_UTR | 30.0% |
| ! | TTTGGAATACCTTAACAACA+GGG | + | chr4_4:41399246-41399265 | None:intergenic | 30.0% |
| !!! | TTTTGGAATACCTTAACAAC+AGG | + | chr4_4:41399247-41399266 | None:intergenic | 30.0% |
| AATTCTTCAATCACCCAATA+AGG | - | chr4_4:41399291-41399310 | Msa0681260:intron | 30.0% | |
| AGAAAATGCAGATCCTTATT+GGG | + | chr4_4:41399307-41399326 | None:intergenic | 30.0% | |
| AAGAAAATGCAGATCCTTAT+TGG | + | chr4_4:41399308-41399327 | None:intergenic | 30.0% | |
| TTTACAAAATTACTGTGGCT+CGG | - | chr4_4:41399408-41399427 | Msa0681260:intron | 30.0% | |
| TACCAAATTAGAGAAACAAG+AGG | - | chr4_4:41399834-41399853 | Msa0681260:CDS | 30.0% | |
| ATTACCAACAAGAAAAGGAA+TGG | + | chr4_4:41399976-41399995 | None:intergenic | 30.0% | |
| ! | TTATATTGATTGTGTAGGAG+AGG | - | chr4_4:41400445-41400464 | Msa0681260:intron | 30.0% |
| ! | TATATTGATTGTGTAGGAGA+GGG | - | chr4_4:41400446-41400465 | Msa0681260:intron | 30.0% |
| AAGTCAAACAAGGACAAAAT+TGG | + | chr4_4:41400487-41400506 | None:intergenic | 30.0% | |
| !! | AATTTTGTCCTTGTTTGACT+TGG | - | chr4_4:41400486-41400505 | Msa0681260:CDS | 30.0% |
| !! | ATTTTGTCCTTGTTTGACTT+GGG | - | chr4_4:41400487-41400506 | Msa0681260:CDS | 30.0% |
| !! | AATTCTAAAGTATGAGTCGT+TGG | + | chr4_4:41400574-41400593 | None:intergenic | 30.0% |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr4_4:41400939-41400958 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr4_4:41400990-41401009 | Msa0681260:intron | 30.0% | |
| GTCCAAAATTTGTCAAAAAG+TGG | - | chr4_4:41401057-41401076 | Msa0681260:intron | 30.0% | |
| TAGGAAAAGAAAATGGAACA+AGG | - | chr4_4:41401325-41401344 | Msa0681260:intron | 30.0% | |
| AGGAAAAGAAAATGGAACAA+GGG | - | chr4_4:41401326-41401345 | Msa0681260:intron | 30.0% | |
| GTTGGGTCAAAAAAAGAAAA+TGG | - | chr4_4:41401348-41401367 | Msa0681260:intron | 30.0% | |
| AAATGGAACAAGGGTAAAAA+TGG | - | chr4_4:41401365-41401384 | Msa0681260:intron | 30.0% | |
| AATGGAACAAGGGTAAAAAT+GGG | - | chr4_4:41401366-41401385 | Msa0681260:intron | 30.0% | |
| ! | TTTTCTACTAGTTCCATCAA+AGG | - | chr4_4:41401416-41401435 | Msa0681260:intron | 30.0% |
| !! | GTGGTTTTGCAGTATATTTA+GGG | - | chr4_4:41401449-41401468 | Msa0681260:intron | 30.0% |
| GTGACATAAGAAATGAAAAG+AGG | + | chr4_4:41401576-41401595 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGTACCTTTTGGT+TGG | - | chr4_4:41401845-41401864 | Msa0681260:intron | 30.0% |
| AATGCATAATTCCATTACAG+TGG | + | chr4_4:41401871-41401890 | None:intergenic | 30.0% | |
| ATGACCAATATCATTAGGTA+AGG | + | chr4_4:41401916-41401935 | None:intergenic | 30.0% | |
| ! | TCTTGATGACCAATATCATT+AGG | + | chr4_4:41401921-41401940 | None:intergenic | 30.0% |
| TGGATTATACCTTAATTCAG+CGG | - | chr4_4:41402680-41402699 | Msa0681260:intron | 30.0% | |
| TATCATATCCATCTTTAGTG+CGG | - | chr4_4:41403237-41403256 | Msa0681260:intron | 30.0% | |
| CAATGAGTTTGACATAATCA+CGG | + | chr4_4:41403283-41403302 | None:intergenic | 30.0% | |
| ! | CAATTCACCTTTTGTTCTAT+TGG | - | chr4_4:41403330-41403349 | Msa0681260:CDS | 30.0% |
| AAAGGATCCAATAGAACAAA+AGG | + | chr4_4:41403340-41403359 | None:intergenic | 30.0% | |
| CATATTCTAGCAAACCAATT+AGG | + | chr4_4:41403400-41403419 | None:intergenic | 30.0% | |
| !! | CTAATTGGTTTGCTAGAATA+TGG | - | chr4_4:41403398-41403417 | Msa0681260:CDS | 30.0% |
| !!! | AACTTTGACATTGGTTTTCT+TGG | + | chr4_4:41403510-41403529 | None:intergenic | 30.0% |
| CAAGATCCAAATTTATGGAA+AGG | - | chr4_4:41403540-41403559 | Msa0681260:CDS | 30.0% | |
| AACTGACCTTTCCATAAATT+TGG | + | chr4_4:41403549-41403568 | None:intergenic | 30.0% | |
| GCCAATAATTTCATGATTGA+AGG | - | chr4_4:41403705-41403724 | Msa0681260:intron | 30.0% | |
| ! | TGATTTGAGTTCCAAACAAA+GGG | - | chr4_4:41403926-41403945 | Msa0681260:intron | 30.0% |
| GTGAACTATAGTACAAAACT+AGG | + | chr4_4:41403961-41403980 | None:intergenic | 30.0% | |
| ! | ATTGTAGGATTTGGTTATGT+TGG | - | chr4_4:41404181-41404200 | Msa0681260:CDS | 30.0% |
| ! | CTCAAAGAGATTTTACACTA+TGG | + | chr4_4:41404209-41404228 | None:intergenic | 30.0% |
| CCCTAAATTAACTGTAGATT+TGG | + | chr4_4:41404338-41404357 | None:intergenic | 30.0% | |
| AAGTAATCAATGGAGAACAA+AGG | - | chr4_4:41404408-41404427 | Msa0681260:CDS | 30.0% | |
| TGTGGGAAAAAAAAATCTTG+AGG | - | chr4_4:41404684-41404703 | Msa0681260:five_prime_UTR | 30.0% | |
| GAGAGAGATCTCATCAAAAA+TGG | - | chr4_4:41398684-41398703 | Msa0681260:three_prime_UTR | 35.0% | |
| TAGTTCACTTGAAATGACTC+TGG | + | chr4_4:41398736-41398755 | None:intergenic | 35.0% | |
| ! | AATGGCACTTATGCTTTTCA+TGG | - | chr4_4:41398849-41398868 | Msa0681260:three_prime_UTR | 35.0% |
| AGTTCTTCATCATCTTGAAG+AGG | + | chr4_4:41398952-41398971 | None:intergenic | 35.0% | |
| CTTCAAGATGATGAAGAACT+TGG | - | chr4_4:41398952-41398971 | Msa0681260:three_prime_UTR | 35.0% | |
| GGAATTTGAACAAGAACAAC+AGG | + | chr4_4:41398991-41399010 | None:intergenic | 35.0% | |
| TCCAATGTTCAATGAAAGAG+AGG | - | chr4_4:41399008-41399027 | Msa0681260:three_prime_UTR | 35.0% | |
| ACCTCTCTTTCATTGAACAT+TGG | + | chr4_4:41399012-41399031 | None:intergenic | 35.0% | |
| CAGGTTTATAAGGTTTCGAT+TGG | - | chr4_4:41399154-41399173 | Msa0681260:CDS | 35.0% | |
| TTATAAGGTTTCGATTGGAG+CGG | - | chr4_4:41399159-41399178 | Msa0681260:CDS | 35.0% | |
| CAGTAGAATCATCAAGTACT+TGG | + | chr4_4:41399222-41399241 | None:intergenic | 35.0% | |
| !! | TTAATTAAAAGGGGGTGTTG+AGG | - | chr4_4:41399677-41399696 | Msa0681260:intron | 35.0% |
| TCATGAATGAATGCAGCAAA+TGG | - | chr4_4:41399764-41399783 | Msa0681260:intron | 35.0% | |
| ! | CACCTCTTGTTTCTCTAATT+TGG | + | chr4_4:41399839-41399858 | None:intergenic | 35.0% |
| CAAATTAGAGAAACAAGAGG+TGG | - | chr4_4:41399837-41399856 | Msa0681260:CDS | 35.0% | |
| ! | ATGGCTCTTCTAAGAAAATC+AGG | + | chr4_4:41399957-41399976 | None:intergenic | 35.0% |
| TCAGGATTACCAACAAGAAA+AGG | + | chr4_4:41399981-41400000 | None:intergenic | 35.0% | |
| GAAAACAAACCCTTCAATCA+CGG | - | chr4_4:41400538-41400557 | Msa0681260:CDS | 35.0% | |
| AAAACAAACCCTTCAATCAC+GGG | - | chr4_4:41400539-41400558 | Msa0681260:CDS | 35.0% | |
| TATTATGTGGGGTCATGAAT+AGG | - | chr4_4:41400798-41400817 | Msa0681260:intron | 35.0% | |
| GGTCAACTCAAAAACAAGAA+CGG | - | chr4_4:41401129-41401148 | Msa0681260:intron | 35.0% | |
| GTCAACTCAAAAACAAGAAC+GGG | - | chr4_4:41401130-41401149 | Msa0681260:intron | 35.0% | |
| AAAGAAAATGGAACAAGGGT+TGG | - | chr4_4:41401330-41401349 | Msa0681260:intron | 35.0% | |
| AAGAAAATGGAACAAGGGTT+GGG | - | chr4_4:41401331-41401350 | Msa0681260:intron | 35.0% | |
| AATATACTGCAAAACCACGT+GGG | + | chr4_4:41401447-41401466 | None:intergenic | 35.0% | |
| AAATATACTGCAAAACCACG+TGG | + | chr4_4:41401448-41401467 | None:intergenic | 35.0% | |
| !! | CGTGGTTTTGCAGTATATTT+AGG | - | chr4_4:41401448-41401467 | Msa0681260:intron | 35.0% |
| AAGGTAAAGTACACTATCAC+AGG | + | chr4_4:41401897-41401916 | None:intergenic | 35.0% | |
| AAGAATGCAAGAGATGTCTT+TGG | - | chr4_4:41402101-41402120 | Msa0681260:intron | 35.0% | |
| TCGTTAGTCAAGATATTGTG+TGG | - | chr4_4:41402237-41402256 | Msa0681260:intron | 35.0% | |
| TGATGTAATCACATGTGTCT+AGG | + | chr4_4:41402352-41402371 | None:intergenic | 35.0% | |
| CAGAACAACAGTTGAAGATA+TGG | - | chr4_4:41402467-41402486 | Msa0681260:intron | 35.0% | |
| TGAATAGAAGATTTACCTGG+AGG | + | chr4_4:41402545-41402564 | None:intergenic | 35.0% | |
| AAATCTCAACCGCTGAATTA+AGG | + | chr4_4:41402692-41402711 | None:intergenic | 35.0% | |
| ! | ATTTTGCGGAAAAGATTAGC+AGG | + | chr4_4:41402860-41402879 | None:intergenic | 35.0% |
| ! | TGCTAATCTTTTCCGCAAAA+TGG | - | chr4_4:41402859-41402878 | Msa0681260:intron | 35.0% |
| AAATGGCGATGGAGATTATA+AGG | - | chr4_4:41402876-41402895 | Msa0681260:intron | 35.0% | |
| GATGGAGATTATAAGGAACA+AGG | - | chr4_4:41402883-41402902 | Msa0681260:intron | 35.0% | |
| TGAGGTTCATGTTCCAATTT+GGG | - | chr4_4:41403136-41403155 | Msa0681260:intron | 35.0% | |
| ATAGAAAATTAAGCGCACCT+TGG | + | chr4_4:41403212-41403231 | None:intergenic | 35.0% | |
| AAGACATGACATTCTCGAAA+AGG | + | chr4_4:41403358-41403377 | None:intergenic | 35.0% | |
| ! | AACAGAGTCTCCAAGTTTTT+CGG | + | chr4_4:41403447-41403466 | None:intergenic | 35.0% |
| AATCTTCTGTCATGTGCATA+TGG | + | chr4_4:41403832-41403851 | None:intergenic | 35.0% | |
| ! | GTGATTTGAGTTCCAAACAA+AGG | - | chr4_4:41403925-41403944 | Msa0681260:intron | 35.0% |
| ! | GATTTGAGTTCCAAACAAAG+GGG | - | chr4_4:41403927-41403946 | Msa0681260:intron | 35.0% |
| !! | ATGTGTTTTTGAACATGAGC+AGG | - | chr4_4:41404041-41404060 | Msa0681260:intron | 35.0% |
| TTGAGAAGGTTAAGGTTTGA+AGG | + | chr4_4:41404162-41404181 | None:intergenic | 35.0% | |
| ACCTTAACCTTCTCAATTGT+AGG | - | chr4_4:41404166-41404185 | Msa0681260:CDS | 35.0% | |
| TCCTACAATTGAGAAGGTTA+AGG | + | chr4_4:41404170-41404189 | None:intergenic | 35.0% | |
| ACCTTCTCAATTGTAGGATT+TGG | - | chr4_4:41404172-41404191 | Msa0681260:CDS | 35.0% | |
| ACCAAATCCTACAATTGAGA+AGG | + | chr4_4:41404176-41404195 | None:intergenic | 35.0% | |
| ACGACACTTACGAAACTTTA+AGG | + | chr4_4:41404239-41404258 | None:intergenic | 35.0% | |
| TACTTTGTAGAGGAGAAACT+AGG | + | chr4_4:41404273-41404292 | None:intergenic | 35.0% | |
| TCCTCTACAAAGTACAAGAA+GGG | - | chr4_4:41404279-41404298 | Msa0681260:intron | 35.0% | |
| TCTACAGTTAATTTAGGGGA+AGG | - | chr4_4:41404340-41404359 | Msa0681260:CDS | 35.0% | |
| CTTTAGACTGTTAGATAGTG+TGG | - | chr4_4:41404482-41404501 | Msa0681260:CDS | 35.0% | |
| GGATAAATTATGCACTCTTG+AGG | - | chr4_4:41404604-41404623 | Msa0681260:CDS | 35.0% | |
| CAAGATGATGAAGAACTTGG+TGG | - | chr4_4:41398955-41398974 | Msa0681260:three_prime_UTR | 40.0% | |
| TTCTACTGACCCTGTTGTTA+AGG | - | chr4_4:41399234-41399253 | Msa0681260:CDS | 40.0% | |
| GTTGGGACTATCACTTTGAA+TGG | + | chr4_4:41399540-41399559 | None:intergenic | 40.0% | |
| TGAATGAATGCAGCAAATGG+TGG | - | chr4_4:41399767-41399786 | Msa0681260:intron | 40.0% | |
| ! | AATGCAGCAAATGGTGGAAA+TGG | - | chr4_4:41399773-41399792 | Msa0681260:intron | 40.0% |
| TGGAAATGGAATGCCAAAGA+TGG | - | chr4_4:41399787-41399806 | Msa0681260:intron | 40.0% | |
| GGAAATGGAATGCCAAAGAT+GGG | - | chr4_4:41399788-41399807 | Msa0681260:intron | 40.0% | |
| TTCCTTTACTTGCCCATCTT+TGG | + | chr4_4:41399803-41399822 | None:intergenic | 40.0% | |
| AAAGCAGGTGCATTGAAAGA+AGG | - | chr4_4:41399864-41399883 | Msa0681260:CDS | 40.0% | |
| ! | CTTCTAAGAAAATCAGGAGG+AGG | + | chr4_4:41399951-41399970 | None:intergenic | 40.0% |
| ! | GCTCTTCTAAGAAAATCAGG+AGG | + | chr4_4:41399954-41399973 | None:intergenic | 40.0% |
| ! | AGAGCCATTCCTTTTCTTGT+TGG | - | chr4_4:41399969-41399988 | Msa0681260:CDS | 40.0% |
| CCTTGAACAAGAGCAATTTC+AGG | + | chr4_4:41399999-41400018 | None:intergenic | 40.0% | |
| CCTGAAATTGCTCTTGTTCA+AGG | - | chr4_4:41399996-41400015 | Msa0681260:CDS | 40.0% | |
| ! | TTCTAGATTCATAGTGTCGG+TGG | - | chr4_4:41400360-41400379 | Msa0681260:intron | 40.0% |
| !! | GATTGAAGGGTTTGTTTTCG+TGG | + | chr4_4:41400537-41400556 | None:intergenic | 40.0% |
| TGTTACAAAAACAACCTGGG+CGG | - | chr4_4:41400738-41400757 | Msa0681260:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | - | chr4_4:41401000-41401019 | Msa0681260:intron | 40.0% | |
| !!! | GTTTTTGAGTTGACCCACAT+TGG | + | chr4_4:41401124-41401143 | None:intergenic | 40.0% |
| AGAGGGAATAGTTGAAGTGT+CGG | + | chr4_4:41401558-41401577 | None:intergenic | 40.0% | |
| CTTCTTGCTCAACTGTGAAA+TGG | + | chr4_4:41402131-41402150 | None:intergenic | 40.0% | |
| TTCACAGTTGAGCAAGAAGT+TGG | - | chr4_4:41402132-41402151 | Msa0681260:intron | 40.0% | |
| TCAGCTACTCATGCTTTCTT+TGG | - | chr4_4:41402156-41402175 | Msa0681260:intron | 40.0% | |
| ! | CATGCTTTCTTTGGCTTCAA+TGG | - | chr4_4:41402165-41402184 | Msa0681260:intron | 40.0% |
| TTGGAATCTTAATGCAGGGA+CGG | - | chr4_4:41402395-41402414 | Msa0681260:intron | 40.0% | |
| ATTGCTGCTATCAATGAAGC+AGG | - | chr4_4:41402432-41402451 | Msa0681260:intron | 40.0% | |
| GCTGCAAAAGATTATGAGCT+AGG | + | chr4_4:41402623-41402642 | None:intergenic | 40.0% | |
| CGATGTTTGACTATATCGAC+TGG | + | chr4_4:41402649-41402668 | None:intergenic | 40.0% | |
| CAAACATCGACCGTTGAATT+TGG | - | chr4_4:41402660-41402679 | Msa0681260:intron | 40.0% | |
| !! | TAATCTCCATCGCCATTTTG+CGG | + | chr4_4:41402874-41402893 | None:intergenic | 40.0% |
| ! | TGTAATCCCCCTCACAATTT+TGG | - | chr4_4:41403109-41403128 | Msa0681260:intron | 40.0% |
| TCAGGAACCAAAATTGTGAG+GGG | + | chr4_4:41403119-41403138 | None:intergenic | 40.0% | |
| CTCAGGAACCAAAATTGTGA+GGG | + | chr4_4:41403120-41403139 | None:intergenic | 40.0% | |
| CAAATTGGAACATGAACCTC+AGG | + | chr4_4:41403137-41403156 | None:intergenic | 40.0% | |
| CTGAGGTTCATGTTCCAATT+TGG | - | chr4_4:41403135-41403154 | Msa0681260:intron | 40.0% | |
| GAGGTTCATGTTCCAATTTG+GGG | - | chr4_4:41403137-41403156 | Msa0681260:intron | 40.0% | |
| ATGTAAACAGCTCCCCAAAT+TGG | + | chr4_4:41403152-41403171 | None:intergenic | 40.0% | |
| !! | TTGAGAATGGTGATGATGGA+AGG | + | chr4_4:41403176-41403195 | None:intergenic | 40.0% |
| ! | TGAGTTGAGAATGGTGATGA+TGG | + | chr4_4:41403180-41403199 | None:intergenic | 40.0% |
| ATCACCATTCTCAACTCAGT+CGG | - | chr4_4:41403182-41403201 | Msa0681260:intron | 40.0% | |
| TGAATTGACCGCACTAAAGA+TGG | + | chr4_4:41403248-41403267 | None:intergenic | 40.0% | |
| ! | TCATCGTGTGAAACTTTTGC+AGG | - | chr4_4:41403306-41403325 | Msa0681260:intron | 40.0% |
| !! | TTGGTTTGCTAGAATATGGG+AGG | - | chr4_4:41403402-41403421 | Msa0681260:CDS | 40.0% |
| !! | TGGTTTGCTAGAATATGGGA+GGG | - | chr4_4:41403403-41403422 | Msa0681260:CDS | 40.0% |
| AATATGGGAGGGCTAATGAA+TGG | - | chr4_4:41403414-41403433 | Msa0681260:CDS | 40.0% | |
| ATATGGGAGGGCTAATGAAT+GGG | - | chr4_4:41403415-41403434 | Msa0681260:CDS | 40.0% | |
| GGACAAAATTCCCCTTTGTT+TGG | + | chr4_4:41403940-41403959 | None:intergenic | 40.0% | |
| CATGAGCAGGCTAAATTTCT+TGG | - | chr4_4:41404054-41404073 | Msa0681260:intron | 40.0% | |
| AGGCTAAATTTCTTGGAGCT+AGG | - | chr4_4:41404061-41404080 | Msa0681260:intron | 40.0% | |
| !! | GCAGTGTTTCTGTTCTTTTG+TGG | - | chr4_4:41404088-41404107 | Msa0681260:intron | 40.0% |
| AGGTTAAGGTTTGAAGGAAG+AGG | + | chr4_4:41404156-41404175 | None:intergenic | 40.0% | |
| CTCCTCTACAAAGTACAAGA+AGG | - | chr4_4:41404278-41404297 | Msa0681260:intron | 40.0% | |
| TCCCTTCTTGTACTTTGTAG+AGG | + | chr4_4:41404283-41404302 | None:intergenic | 40.0% | |
| TAGTTGTGCGCAAAGATATC+TGG | - | chr4_4:41404756-41404775 | Msa0681260:five_prime_UTR | 40.0% | |
| ! | AGAGAGAGAGAGTGTGAGAA+GGG | + | chr4_4:41398532-41398551 | None:intergenic | 45.0% |
| TGCCAAAGATGGGCAAGTAA+AGG | - | chr4_4:41399798-41399817 | Msa0681260:intron | 45.0% | |
| ACAAGAGGTGGATACAAAGC+AGG | - | chr4_4:41399849-41399868 | Msa0681260:CDS | 45.0% | |
| TTGCTCTTGTTCAAGGTCGT+TGG | - | chr4_4:41400003-41400022 | Msa0681260:CDS | 45.0% | |
| GTTCAAGGTCGTTGGAGATT+TGG | - | chr4_4:41400011-41400030 | Msa0681260:CDS | 45.0% | |
| !! | TTGTTTGACTTGGGTTAGCC+CGG | - | chr4_4:41400496-41400515 | Msa0681260:CDS | 45.0% |
| AAACCCTTCAATCACGGGTA+GGG | - | chr4_4:41400544-41400563 | Msa0681260:CDS | 45.0% | |
| ACTAAATATCATAGCCGCCC+AGG | + | chr4_4:41400755-41400774 | None:intergenic | 45.0% | |
| AAGGTCGACCATAAGACACA+TGG | + | chr4_4:41401524-41401543 | None:intergenic | 45.0% | |
| !! | GTTGAAGTGTCGGCAAGAAA+GGG | + | chr4_4:41401548-41401567 | None:intergenic | 45.0% |
| !! | AGTTGAAGTGTCGGCAAGAA+AGG | + | chr4_4:41401549-41401568 | None:intergenic | 45.0% |
| CATTACAGTGGCCAACCAAA+AGG | + | chr4_4:41401859-41401878 | None:intergenic | 45.0% | |
| !! | CTTTTGGTTGGCCACTGTAA+TGG | - | chr4_4:41401857-41401876 | Msa0681260:intron | 45.0% |
| TGGATTCGAGCCCACATATT+TGG | - | chr4_4:41402257-41402276 | Msa0681260:intron | 45.0% | |
| GACGATGCAGCCAAATATGT+GGG | + | chr4_4:41402270-41402289 | None:intergenic | 45.0% | |
| AGACGATGCAGCCAAATATG+TGG | + | chr4_4:41402271-41402290 | None:intergenic | 45.0% | |
| AGCAGCAATTCGCCAAATAC+CGG | + | chr4_4:41402421-41402440 | None:intergenic | 45.0% | |
| CTATCAATGAAGCAGGAGGA+TGG | - | chr4_4:41402439-41402458 | Msa0681260:intron | 45.0% | |
| ! | CTGAATGCTCTCAGAGTACT+TGG | + | chr4_4:41402809-41402828 | None:intergenic | 45.0% |
| ! | TCTTTTCCGCAAAATGGCGA+TGG | - | chr4_4:41402865-41402884 | Msa0681260:intron | 45.0% |
| GTGTGCAGAAAGTGAAGTTC+TGG | - | chr4_4:41403006-41403025 | Msa0681260:intron | 45.0% | |
| CAGGAACCAAAATTGTGAGG+GGG | + | chr4_4:41403118-41403137 | None:intergenic | 45.0% | |
| CCTCAGGAACCAAAATTGTG+AGG | + | chr4_4:41403121-41403140 | None:intergenic | 45.0% | |
| !!! | CCTCACAATTTTGGTTCCTG+AGG | - | chr4_4:41403118-41403137 | Msa0681260:intron | 45.0% |
| ! | TGTTCCGACTGAGTTGAGAA+TGG | + | chr4_4:41403189-41403208 | None:intergenic | 45.0% |
| ! | CAATTAGGGTCGCTTTGGTA+CGG | + | chr4_4:41403385-41403404 | None:intergenic | 45.0% |
| CAAACCAATTAGGGTCGCTT+TGG | + | chr4_4:41403390-41403409 | None:intergenic | 45.0% | |
| TGGGTTGTGACCGAAAAACT+TGG | - | chr4_4:41403434-41403453 | Msa0681260:CDS | 45.0% | |
| CTCACACTAGCTGGCATTAA+AGG | - | chr4_4:41403668-41403687 | Msa0681260:intron | 45.0% | |
| TTCTGTAAGGCTCATGTGCA+TGG | + | chr4_4:41403794-41403813 | None:intergenic | 45.0% | |
| GGATGCTATGACTATGTGCA+TGG | - | chr4_4:41404109-41404128 | Msa0681260:CDS | 45.0% | |
| !!! | TTAGATTTTTTTTAATTAAA+AGG | - | chr4_4:41399666-41399685 | Msa0681260:intron | 5.0% |
| !!! | TAGATTTTTTTTAATTAAAA+GGG | - | chr4_4:41399667-41399686 | Msa0681260:intron | 5.0% |
| !!! | TTTTTTTAGTAATAAAATTA+AGG | - | chr4_4:41402012-41402031 | Msa0681260:intron | 5.0% |
| !!! | TTTTTTTTTTTTATAGATTT+TGG | + | chr4_4:41404445-41404464 | None:intergenic | 5.0% |
| ! | GAGAGAGAGAGAGTGTGAGA+AGG | + | chr4_4:41398533-41398552 | None:intergenic | 50.0% |
| GGGCTAACCCAAGTCAAACA+AGG | + | chr4_4:41400497-41400516 | None:intergenic | 50.0% | |
| !! | ACTTGGGTTAGCCCGGTTTA+GGG | - | chr4_4:41400503-41400522 | Msa0681260:CDS | 50.0% |
| TTAGCCCGGTTTAGGGGAAT+GGG | - | chr4_4:41400510-41400529 | Msa0681260:CDS | 50.0% | |
| CAAACCCTTCAATCACGGGT+AGG | - | chr4_4:41400543-41400562 | Msa0681260:CDS | 50.0% | |
| GTTCCCTACCCGTGATTGAA+GGG | + | chr4_4:41400550-41400569 | None:intergenic | 50.0% | |
| TGTTCCCTACCCGTGATTGA+AGG | + | chr4_4:41400551-41400570 | None:intergenic | 50.0% | |
| GGGTAGCACCATGTGTCTTA+TGG | - | chr4_4:41401513-41401532 | Msa0681260:intron | 50.0% | |
| !! | AGTGTCGGCAAGAAAGGGTA+AGG | + | chr4_4:41401543-41401562 | None:intergenic | 50.0% |
| AATCTTAATGCAGGGACGGC+CGG | - | chr4_4:41402399-41402418 | Msa0681260:intron | 50.0% | |
| GCTGCTATCAATGAAGCAGG+AGG | - | chr4_4:41402435-41402454 | Msa0681260:intron | 50.0% | |
| ! | TAAGACTTGCTCGAACAGCG+AGG | + | chr4_4:41402494-41402513 | None:intergenic | 50.0% |
| TCGCTGTTCGAGCAAGTCTT+AGG | - | chr4_4:41402493-41402512 | Msa0681260:intron | 50.0% | |
| CGCTGTTCGAGCAAGTCTTA+GGG | - | chr4_4:41402494-41402513 | Msa0681260:intron | 50.0% | |
| GCTGTTCGAGCAAGTCTTAG+GGG | - | chr4_4:41402495-41402514 | Msa0681260:intron | 50.0% | |
| TTCGAGCAAGTCTTAGGGGA+TGG | - | chr4_4:41402499-41402518 | Msa0681260:intron | 50.0% | |
| GATTTACCTGGAGGTCTCCA+AGG | + | chr4_4:41402536-41402555 | None:intergenic | 50.0% | |
| TCAGATTCCAGCAGCACAGA+TGG | - | chr4_4:41402825-41402844 | Msa0681260:intron | 50.0% | |
| GAGCTACGATCTTGCGAACA+AGG | + | chr4_4:41403061-41403080 | None:intergenic | 50.0% | |
| TCGCAAGATCGTAGCTCACA+TGG | - | chr4_4:41403064-41403083 | Msa0681260:intron | 50.0% | |
| TCAACTCAGTCGGAACACCA+AGG | - | chr4_4:41403192-41403211 | Msa0681260:intron | 50.0% | |
| CGTACCAAAGCGACCCTAAT+TGG | - | chr4_4:41403383-41403402 | Msa0681260:CDS | 50.0% | |
| CACTTGTCACTCACACTAGC+TGG | - | chr4_4:41403659-41403678 | Msa0681260:intron | 50.0% | |
| TTTCGATTGGAGCGGCCTGT+GGG | - | chr4_4:41399167-41399186 | Msa0681260:CDS | 55.0% | |
| TGGATCACGAGTCGATCCGT+CGG | + | chr4_4:41399202-41399221 | None:intergenic | 55.0% | |
| !! | TCATAGTGTCGGTGGCTTGC+TGG | - | chr4_4:41400368-41400387 | Msa0681260:intron | 55.0% |
| !! | GACTTGGGTTAGCCCGGTTT+AGG | - | chr4_4:41400502-41400521 | Msa0681260:CDS | 55.0% |
| !! | CTTGGGTTAGCCCGGTTTAG+GGG | - | chr4_4:41400504-41400523 | Msa0681260:CDS | 55.0% |
| GTTAGCCCGGTTTAGGGGAA+TGG | - | chr4_4:41400509-41400528 | Msa0681260:CDS | 55.0% | |
| TGGACCCATTCCCCTAAACC+GGG | + | chr4_4:41400517-41400536 | None:intergenic | 55.0% | |
| GTGGACCCATTCCCCTAAAC+CGG | + | chr4_4:41400518-41400537 | None:intergenic | 55.0% | |
| !! | CACGTGGGAAGTGCCTTTGA+TGG | + | chr4_4:41401432-41401451 | None:intergenic | 55.0% |
| !! | CATCAAAGGCACTTCCCACG+TGG | - | chr4_4:41401430-41401449 | Msa0681260:intron | 55.0% |
| CACAAGACCATCTGTGCTGC+TGG | + | chr4_4:41402835-41402854 | None:intergenic | 55.0% | |
| ! | CAGCAGCACAGATGGTCTTG+TGG | - | chr4_4:41402833-41402852 | Msa0681260:intron | 55.0% |
| GTTTCGATTGGAGCGGCCTG+TGG | - | chr4_4:41399166-41399185 | Msa0681260:CDS | 60.0% | |
| CTGTGGGCTTTCATGGCCGA+CGG | - | chr4_4:41399183-41399202 | Msa0681260:CDS | 60.0% | |
| ATGCAGGGACGGCCGGTATT+TGG | - | chr4_4:41402406-41402425 | Msa0681260:intron | 60.0% | |
| GAGCGGCCTGTGGGCTTTCA+TGG | - | chr4_4:41399176-41399195 | Msa0681260:CDS | 65.0% | |
| CGTCGGCCATGAAAGCCCAC+AGG | + | chr4_4:41399185-41399204 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 41398528 | 41404834 | 41398528 | ID=Msa0681260;Name=Msa0681260 |
| chr4_4 | mRNA | 41398528 | 41404834 | 41398528 | ID=Msa0681260-mRNA-1;Parent=Msa0681260;Name=Msa0681260-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|0.77|0.9|0.9|1|1|10|618|562 |
| chr4_4 | exon | 41398528 | 41399299 | 41398528 | ID=Msa0681260-mRNA-1:exon:9889;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41399801 | 41400034 | 41399801 | ID=Msa0681260-mRNA-1:exon:9888;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41400149 | 41400348 | 41400149 | ID=Msa0681260-mRNA-1:exon:9887;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41400458 | 41400571 | 41400458 | ID=Msa0681260-mRNA-1:exon:9886;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41400661 | 41400720 | 41400661 | ID=Msa0681260-mRNA-1:exon:9885;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41400814 | 41400950 | 41400814 | ID=Msa0681260-mRNA-1:exon:9884;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41401176 | 41401286 | 41401176 | ID=Msa0681260-mRNA-1:exon:9883;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41403330 | 41403582 | 41403330 | ID=Msa0681260-mRNA-1:exon:9882;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41404107 | 41404205 | 41404107 | ID=Msa0681260-mRNA-1:exon:9881;Parent=Msa0681260-mRNA-1 |
| chr4_4 | exon | 41404333 | 41404834 | 41404333 | ID=Msa0681260-mRNA-1:exon:9880;Parent=Msa0681260-mRNA-1 |
| chr4_4 | five_prime_UTR | 41404660 | 41404834 | 41404660 | ID=Msa0681260-mRNA-1:five_prime_utr;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41404333 | 41404659 | 41404333 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41404107 | 41404205 | 41404107 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41403330 | 41403582 | 41403330 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41401176 | 41401286 | 41401176 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41400814 | 41400950 | 41400814 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41400661 | 41400720 | 41400661 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41400458 | 41400571 | 41400458 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41400149 | 41400348 | 41400149 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41399801 | 41400034 | 41399801 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | CDS | 41399146 | 41399299 | 41399146 | ID=Msa0681260-mRNA-1:cds;Parent=Msa0681260-mRNA-1 |
| chr4_4 | three_prime_UTR | 41398528 | 41399145 | 41398528 | ID=Msa0681260-mRNA-1:three_prime_utr;Parent=Msa0681260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
