Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200990 | XP_003629192.1 | 85.312 | 320 | 36 | 1 | 24 | 332 | 1 | 320 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200990 | sp|P36907|CHIX_PEA | 73.125 | 320 | 75 | 1 | 24 | 332 | 1 | 320 | 6.50e-171 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0311810 | Msa1200990 | 0.803644 | 3.159237e-49 | -8.615850e-47 |
| Msa1200990 | Msa1254010 | 0.911015 | 9.799388e-83 | -8.615850e-47 |
| Msa1200990 | Msa1294250 | 0.959780 | 8.057149e-118 | -8.615850e-47 |
| Msa1200990 | Msa1345400 | 0.801729 | 7.847290e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200990 | MtrunA17_Chr8g0370851 | 85.312 | 320 | 36 | 1 | 24 | 332 | 1 | 320 | 0.0 | 561 |
| Msa1200990 | MtrunA17_Chr8g0370821 | 76.412 | 301 | 59 | 1 | 44 | 332 | 31 | 331 | 2.23e-169 | 474 |
| Msa1200990 | MtrunA17_Chr8g0370831 | 72.368 | 304 | 57 | 2 | 43 | 332 | 19 | 309 | 1.05e-150 | 426 |
| Msa1200990 | MtrunA17_Chr3g0145981 | 60.303 | 330 | 123 | 3 | 3 | 331 | 9 | 331 | 1.88e-147 | 419 |
| Msa1200990 | MtrunA17_Chr7g0270841 | 51.969 | 254 | 120 | 1 | 80 | 331 | 24 | 277 | 3.70e-93 | 278 |
| Msa1200990 | MtrunA17_Chr7g0221751 | 41.736 | 242 | 130 | 4 | 101 | 331 | 69 | 310 | 9.83e-61 | 197 |
| Msa1200990 | MtrunA17_Chr1g0206111 | 40.909 | 242 | 132 | 4 | 101 | 331 | 72 | 313 | 1.13e-58 | 191 |
| Msa1200990 | MtrunA17_Chr2g0329791 | 37.654 | 324 | 139 | 11 | 22 | 325 | 2 | 282 | 3.40e-58 | 189 |
| Msa1200990 | MtrunA17_Chr2g0294721 | 41.564 | 243 | 130 | 6 | 101 | 331 | 65 | 307 | 1.09e-57 | 189 |
| Msa1200990 | MtrunA17_Chr2g0329781 | 37.209 | 301 | 129 | 12 | 42 | 325 | 6 | 263 | 1.45e-51 | 171 |
| Msa1200990 | MtrunA17_Chr7g0274181 | 56.140 | 57 | 23 | 1 | 29 | 85 | 3 | 57 | 5.02e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200990 | AT3G12500.1 | 69.153 | 295 | 83 | 3 | 46 | 332 | 33 | 327 | 1.12e-143 | 409 |
| Msa1200990 | AT1G02360.3 | 53.053 | 262 | 117 | 2 | 73 | 332 | 67 | 324 | 1.31e-97 | 291 |
| Msa1200990 | AT4G01700.1 | 54.918 | 244 | 108 | 1 | 91 | 332 | 37 | 280 | 1.51e-97 | 290 |
| Msa1200990 | AT1G02360.1 | 53.053 | 262 | 117 | 2 | 73 | 332 | 15 | 272 | 1.83e-97 | 290 |
| Msa1200990 | AT1G02360.2 | 53.053 | 262 | 117 | 2 | 73 | 332 | 61 | 318 | 2.25e-97 | 291 |
| Msa1200990 | AT3G54420.1 | 35.962 | 317 | 149 | 9 | 19 | 325 | 1 | 273 | 1.08e-57 | 188 |
| Msa1200990 | AT1G05850.1 | 39.256 | 242 | 136 | 5 | 101 | 331 | 69 | 310 | 1.44e-56 | 186 |
| Msa1200990 | AT1G05850.2 | 39.256 | 242 | 136 | 5 | 101 | 331 | 69 | 310 | 1.44e-56 | 186 |
| Msa1200990 | AT3G16920.2 | 38.272 | 243 | 138 | 5 | 101 | 331 | 101 | 343 | 4.99e-54 | 181 |
| Msa1200990 | AT3G16920.1 | 38.272 | 243 | 138 | 5 | 101 | 331 | 77 | 319 | 7.48e-54 | 180 |
| Msa1200990 | AT2G43590.1 | 38.754 | 289 | 122 | 10 | 45 | 325 | 23 | 264 | 2.05e-52 | 174 |
| Msa1200990 | AT2G43620.1 | 35.331 | 317 | 136 | 12 | 33 | 325 | 12 | 283 | 1.59e-48 | 164 |
| Msa1200990 | AT2G43570.1 | 34.091 | 308 | 140 | 10 | 33 | 325 | 18 | 277 | 2.49e-47 | 161 |
| Msa1200990 | AT2G43610.1 | 35.962 | 317 | 138 | 14 | 29 | 325 | 10 | 281 | 1.34e-46 | 159 |
| Msa1200990 | AT2G43580.1 | 37.319 | 276 | 126 | 8 | 58 | 325 | 29 | 265 | 4.56e-46 | 157 |
| Msa1200990 | AT1G56680.1 | 31.183 | 279 | 136 | 10 | 63 | 325 | 42 | 280 | 2.87e-32 | 122 |
| Msa1200990 | AT1G56680.2 | 31.183 | 279 | 136 | 10 | 63 | 325 | 65 | 303 | 5.98e-32 | 121 |
| Msa1200990 | AT2G43600.1 | 30.357 | 280 | 136 | 12 | 63 | 325 | 36 | 273 | 3.50e-30 | 116 |
| Msa1200990 | AT2G43600.2 | 30.357 | 280 | 136 | 12 | 63 | 325 | 57 | 294 | 8.40e-30 | 115 |
| Msa1200990 | AT3G47540.1 | 30.000 | 250 | 113 | 11 | 85 | 325 | 18 | 214 | 9.92e-19 | 84.0 |
| Msa1200990 | AT3G47540.2 | 29.339 | 242 | 109 | 11 | 85 | 317 | 18 | 206 | 1.09e-15 | 76.6 |
Find 100 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATCAAATCTTCGTTAA+TGG | 0.183482 | 8_1:-54131468 | None:intergenic |
| TGTTTACTACCTTTCTTTCT+TGG | 0.224675 | 8_1:+54130578 | Msa1200990:CDS |
| TCAGGACATCCCTATGGTTT+TGG | 0.255789 | 8_1:+54131528 | Msa1200990:CDS |
| TATTACAGCAACTACAATTA+TGG | 0.278472 | 8_1:+54131431 | Msa1200990:intron |
| CGCGAAATTTGTGCTTTCTT+AGG | 0.298327 | 8_1:+54130905 | Msa1200990:CDS |
| AGGTTCTGTTGCAGCCAATT+TGG | 0.316676 | 8_1:+54130653 | Msa1200990:CDS |
| CAAATGCAGTCGTGTCATTC+AGG | 0.337259 | 8_1:+54131510 | Msa1200990:CDS |
| GCAGGGAGAGTCCCCGGATA+TGG | 0.342398 | 8_1:+54131629 | Msa1200990:CDS |
| AAGCACAAATTTCGCGCTTA+CGG | 0.342531 | 8_1:-54130898 | None:intergenic |
| TCTACCACATTGCTGAGCTT+TGG | 0.350437 | 8_1:-54130603 | None:intergenic |
| GGAGCACATGGCCAAGTTCC+GGG | 0.357495 | 8_1:-54131211 | None:intergenic |
| AGCACAAATTTCGCGCTTAC+GGG | 0.366237 | 8_1:-54130897 | None:intergenic |
| TCAAGCCATGATGTGATTAC+TGG | 0.373764 | 8_1:+54131575 | Msa1200990:CDS |
| TGTTGCCACAATAACCAAAT+TGG | 0.376604 | 8_1:-54130667 | None:intergenic |
| GTTGGTGATCACGCCATATC+CGG | 0.377064 | 8_1:-54131642 | None:intergenic |
| GCTTACTGAGTGAGTTGAAT+TGG | 0.389797 | 8_1:-54131259 | None:intergenic |
| ATGGAGCTCTTTGCGCAAAT+AGG | 0.394600 | 8_1:+54130633 | Msa1200990:CDS |
| GAATGACACGACTGCATTTG+AGG | 0.399748 | 8_1:-54131507 | None:intergenic |
| GTAATCACATCATGGCTTGA+TGG | 0.406185 | 8_1:-54131572 | None:intergenic |
| GCTTGAATGTGGGCGCGGTC+AGG | 0.406934 | 8_1:+54131679 | Msa1200990:CDS |
| ACCAAATCCGGGAAAAGAAT+TGG | 0.411058 | 8_1:-54130855 | None:intergenic |
| GTGGGCGCGGTCAGGATCCT+CGG | 0.413992 | 8_1:+54131687 | Msa1200990:CDS |
| CGAAGATTTGATAAACAATC+CGG | 0.416154 | 8_1:+54131475 | Msa1200990:CDS |
| TAGAAGATATTGTCAACTGT+TGG | 0.422844 | 8_1:+54131733 | Msa1200990:CDS |
| ATAGAAGAAGTAGGTGTTGT+TGG | 0.422949 | 8_1:-54130749 | None:intergenic |
| AGGAGCACATGGCCAAGTTC+CGG | 0.423338 | 8_1:-54131212 | None:intergenic |
| CTCGGGTTGAAGACCGGATC+GGG | 0.424799 | 8_1:+54131705 | Msa1200990:CDS |
| ATCACCGGTAGTACCAAATC+CGG | 0.431755 | 8_1:-54130867 | None:intergenic |
| AGTGGGCACCGGTGCTAACT+TGG | 0.437461 | 8_1:+54131757 | Msa1200990:CDS |
| TGAAGAGTAGAGAGTTGCTT+TGG | 0.448657 | 8_1:-54130516 | None:intergenic |
| GTTGGTGTCGGTGTTGAAGT+AGG | 0.450581 | 8_1:-54130731 | None:intergenic |
| CGAAATGATCCACGTTGTGC+TGG | 0.450696 | 8_1:+54130794 | Msa1200990:CDS |
| ATCTTCTATAAAACCCGATC+CGG | 0.453034 | 8_1:-54131718 | None:intergenic |
| GATCCACGTTGTGCTGGAAA+TGG | 0.453660 | 8_1:+54130800 | Msa1200990:CDS |
| TCGTTAATGGCTCTACCGGC+TGG | 0.457563 | 8_1:-54131455 | None:intergenic |
| ATCTTCGTTAATGGCTCTAC+CGG | 0.460856 | 8_1:-54131459 | None:intergenic |
| AGGTAATTGGCTTAAGCAAA+TGG | 0.465402 | 8_1:-54131797 | None:intergenic |
| TTGATGGCTTGTTTCCCTGC+GGG | 0.466168 | 8_1:-54131556 | None:intergenic |
| TTGGTGATCACGCCATATCC+GGG | 0.466881 | 8_1:-54131641 | None:intergenic |
| AGAAGATATTGTCAACTGTT+GGG | 0.473229 | 8_1:+54131734 | Msa1200990:CDS |
| ACTATTGTACACCCGGAACT+TGG | 0.476555 | 8_1:+54131200 | Msa1200990:CDS |
| CAACTGTTGGGAGTGGGCAC+CGG | 0.492998 | 8_1:+54131746 | Msa1200990:CDS |
| AAGCAATATCCCCACGCGTA+TGG | 0.495207 | 8_1:-54131151 | None:intergenic |
| GGAACTTGGCCATGTGCTCC+TGG | 0.498240 | 8_1:+54131214 | Msa1200990:CDS |
| CAATGTGGTAGACAAGCTAA+TGG | 0.501423 | 8_1:+54130614 | Msa1200990:CDS |
| AACTCAGCAGGGAGAGTCCC+CGG | 0.506713 | 8_1:+54131623 | Msa1200990:CDS |
| TGCAGCCAATTTGGTTATTG+TGG | 0.508832 | 8_1:+54130662 | Msa1200990:CDS |
| AAGCCCACCGTTGATTATGT+TGG | 0.513005 | 8_1:-54131660 | None:intergenic |
| CCCCACGCGTATGGACCGTC+TGG | 0.516224 | 8_1:-54131142 | None:intergenic |
| GCGGGGTCATCCAAAACCAT+AGG | 0.517162 | 8_1:-54131538 | None:intergenic |
| CGGGTGTACAATAGTCACTC+GGG | 0.517256 | 8_1:-54131192 | None:intergenic |
| GCATTTGAGGACACTAAATC+CGG | 0.517777 | 8_1:-54131494 | None:intergenic |
| CAAACTTCTCATGAAACTAC+AGG | 0.517952 | 8_1:+54130929 | Msa1200990:CDS |
| TGGGCGCGGTCAGGATCCTC+GGG | 0.523654 | 8_1:+54131688 | Msa1200990:CDS |
| TCTGCTGCTGACAACTCAGC+AGG | 0.531521 | 8_1:+54131611 | Msa1200990:CDS |
| AGGATCCTCGGGTTGAAGAC+CGG | 0.532727 | 8_1:+54131699 | Msa1200990:CDS |
| TTTCCCGGATTTGGTACTAC+CGG | 0.536092 | 8_1:+54130863 | Msa1200990:CDS |
| ATCAACGGTGGGCTTGAATG+TGG | 0.542951 | 8_1:+54131668 | Msa1200990:CDS |
| ACTGCTGACTACTGTGGAGC+TGG | 0.548407 | 8_1:+54130689 | Msa1200990:CDS |
| AGCAGTTATGAAACTATTGT+AGG | 0.548527 | 8_1:-54130831 | None:intergenic |
| CCGAGTGACTATTGTACACC+CGG | 0.550082 | 8_1:+54131193 | Msa1200990:CDS |
| AACTACAATTATGGTCCAGC+CGG | 0.554031 | 8_1:+54131440 | Msa1200990:CDS |
| TGATGGCTTGTTTCCCTGCG+GGG | 0.556357 | 8_1:-54131555 | None:intergenic |
| GAAGTAGGTGTTGTTGGTGT+CGG | 0.556693 | 8_1:-54130743 | None:intergenic |
| ACTTGGATTGCTACAATCAA+AGG | 0.557758 | 8_1:+54131774 | Msa1200990:CDS |
| ATGATGTGATTACTGGAAGA+TGG | 0.560376 | 8_1:+54131582 | Msa1200990:CDS |
| TATGGACCGTCTGGTGCAGT+TGG | 0.561589 | 8_1:-54131133 | None:intergenic |
| TGATCAAACATAGAAGAAGT+AGG | 0.565788 | 8_1:-54130758 | None:intergenic |
| GCTTTGGATCCAAGAAAGAA+AGG | 0.574127 | 8_1:-54130587 | None:intergenic |
| GGTGGGCTTGAATGTGGGCG+CGG | 0.574686 | 8_1:+54131674 | Msa1200990:CDS |
| CGGGGTCATCCAAAACCATA+GGG | 0.575785 | 8_1:-54131537 | None:intergenic |
| TGTCATTCAGGACATCCCTA+TGG | 0.576454 | 8_1:+54131522 | Msa1200990:CDS |
| CCTCGGGTTGAAGACCGGAT+CGG | 0.578639 | 8_1:+54131704 | Msa1200990:CDS |
| ATCTTCCAGTAATCACATCA+TGG | 0.581870 | 8_1:-54131580 | None:intergenic |
| GCTGAGTTGTCAGCAGCAGA+TGG | 0.588520 | 8_1:-54131608 | None:intergenic |
| TCAACGGTGGGCTTGAATGT+GGG | 0.593771 | 8_1:+54131669 | Msa1200990:CDS |
| ATATTGTCAACTGTTGGGAG+TGG | 0.598502 | 8_1:+54131739 | Msa1200990:CDS |
| TATTGTCAACTGTTGGGAGT+GGG | 0.600964 | 8_1:+54131740 | Msa1200990:CDS |
| CTTGATGGCTTGTTTCCCTG+CGG | 0.601085 | 8_1:-54131557 | None:intergenic |
| GGTAAAAGATACTACGGCAG+AGG | 0.614833 | 8_1:+54131235 | Msa1200990:CDS |
| GCTCCTGGTAAAAGATACTA+CGG | 0.615095 | 8_1:+54131229 | Msa1200990:CDS |
| TCACCGGTAGTACCAAATCC+GGG | 0.617852 | 8_1:-54130866 | None:intergenic |
| ACCAGACGGTCCATACGCGT+GGG | 0.630386 | 8_1:+54131141 | Msa1200990:CDS |
| CTGCTGCTGACAACTCAGCA+GGG | 0.634020 | 8_1:+54131612 | Msa1200990:CDS |
| GTAGCAATCCAAGTTAGCAC+CGG | 0.635055 | 8_1:-54131765 | None:intergenic |
| GGGTGGCCAACTGCACCAGA+CGG | 0.640935 | 8_1:+54131127 | Msa1200990:CDS |
| ATCACCAACATAATCAACGG+TGG | 0.648299 | 8_1:+54131656 | Msa1200990:CDS |
| GTGTTGAAGTAGGTGTACAC+TGG | 0.650247 | 8_1:-54130721 | None:intergenic |
| CCGATCCGGTCTTCAACCCG+AGG | 0.655956 | 8_1:-54131704 | None:intergenic |
| CTTACGGGTGTTATCATCAC+CGG | 0.656769 | 8_1:-54130882 | None:intergenic |
| GGGTGTACAATAGTCACTCG+GGG | 0.657986 | 8_1:-54131191 | None:intergenic |
| GTGATCACCAACATAATCAA+CGG | 0.660417 | 8_1:+54131653 | Msa1200990:CDS |
| TCACCAACATAATCAACGGT+GGG | 0.667728 | 8_1:+54131657 | Msa1200990:CDS |
| GGCAACACTGCTGACTACTG+TGG | 0.678244 | 8_1:+54130683 | Msa1200990:CDS |
| TGGTGATCACGCCATATCCG+GGG | 0.679659 | 8_1:-54131640 | None:intergenic |
| TTTGGTGTCTAACATGAACG+AGG | 0.690538 | 8_1:-54130498 | None:intergenic |
| TTGGTGTCTAACATGAACGA+GGG | 0.701490 | 8_1:-54130497 | None:intergenic |
| GGATCCAAAGCTCAGCAATG+TGG | 0.701619 | 8_1:+54130599 | Msa1200990:CDS |
| AATCCATTTCCAGCACAACG+TGG | 0.723881 | 8_1:-54130803 | None:intergenic |
| GGTGTACAATAGTCACTCGG+GGG | 0.760426 | 8_1:-54131190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGAAAAATAAAATAACA+TGG | - | chr8_1:54131341-54131360 | None:intergenic | 10.0% |
| !! | TTAAGAAAAATAAAATAACA+TGG | - | chr8_1:54131341-54131360 | None:intergenic | 10.0% |
| !!! | TAACTTTTTGTTTAGATAAT+TGG | + | chr8_1:54130966-54130985 | Msa1200990:intron | 15.0% |
| !!! | AATATGTTTGTTTTGAATTT+TGG | + | chr8_1:54131015-54131034 | Msa1200990:intron | 15.0% |
| !!! | TAACTTTTTGTTTAGATAAT+TGG | + | chr8_1:54130966-54130985 | Msa1200990:intron | 15.0% |
| !!! | AATATGTTTGTTTTGAATTT+TGG | + | chr8_1:54131015-54131034 | Msa1200990:intron | 15.0% |
| !!! | TCAAATGTTTTTGAGAATGT+AGG | + | chr8_1:54131103-54131122 | Msa1200990:intron | 25.0% |
| ! | ACATGGTTTGATATTTAGAT+GGG | - | chr8_1:54131324-54131343 | None:intergenic | 25.0% |
| ! | AACATGGTTTGATATTTAGA+TGG | - | chr8_1:54131325-54131344 | None:intergenic | 25.0% |
| ! | TAAACACTCATATCTATAAC+TGG | - | chr8_1:54131386-54131405 | None:intergenic | 25.0% |
| ! | AATTGTAGTTGCTGTAATAA+AGG | - | chr8_1:54131430-54131449 | None:intergenic | 25.0% |
| ! | TATTACAGCAACTACAATTA+TGG | + | chr8_1:54131431-54131450 | Msa1200990:intron | 25.0% |
| ! | GTTTATCAAATCTTCGTTAA+TGG | - | chr8_1:54131471-54131490 | None:intergenic | 25.0% |
| !!! | TCAAATGTTTTTGAGAATGT+AGG | + | chr8_1:54131103-54131122 | Msa1200990:intron | 25.0% |
| ! | ACATGGTTTGATATTTAGAT+GGG | - | chr8_1:54131324-54131343 | None:intergenic | 25.0% |
| ! | AACATGGTTTGATATTTAGA+TGG | - | chr8_1:54131325-54131344 | None:intergenic | 25.0% |
| ! | TAAACACTCATATCTATAAC+TGG | - | chr8_1:54131386-54131405 | None:intergenic | 25.0% |
| ! | AATTGTAGTTGCTGTAATAA+AGG | - | chr8_1:54131430-54131449 | None:intergenic | 25.0% |
| ! | TATTACAGCAACTACAATTA+TGG | + | chr8_1:54131431-54131450 | Msa1200990:intron | 25.0% |
| ! | GTTTATCAAATCTTCGTTAA+TGG | - | chr8_1:54131471-54131490 | None:intergenic | 25.0% |
| AACTCTCTACTCTTCAAAAA+TGG | + | chr8_1:54130523-54130542 | Msa1200990:CDS | 30.0% | |
| ACTCTCTACTCTTCAAAAAT+GGG | + | chr8_1:54130524-54130543 | Msa1200990:CDS | 30.0% | |
| TGTTTACTACCTTTCTTTCT+TGG | + | chr8_1:54130578-54130597 | Msa1200990:CDS | 30.0% | |
| TGATCAAACATAGAAGAAGT+AGG | - | chr8_1:54130761-54130780 | None:intergenic | 30.0% | |
| AGCAGTTATGAAACTATTGT+AGG | - | chr8_1:54130834-54130853 | None:intergenic | 30.0% | |
| !! | AATGTTTTTGAGAATGTAGG+AGG | + | chr8_1:54131106-54131125 | Msa1200990:intron | 30.0% |
| !! | ATGTTTTTGAGAATGTAGGA+GGG | + | chr8_1:54131107-54131126 | Msa1200990:intron | 30.0% |
| ATGGTTTGATATTTAGATGG+GGG | - | chr8_1:54131322-54131341 | None:intergenic | 30.0% | |
| CATGGTTTGATATTTAGATG+GGG | - | chr8_1:54131323-54131342 | None:intergenic | 30.0% | |
| ATGAGTGTTTAGTGAACTAA+TGG | + | chr8_1:54131395-54131414 | Msa1200990:intron | 30.0% | |
| TGAGTGTTTAGTGAACTAAT+GGG | + | chr8_1:54131396-54131415 | Msa1200990:intron | 30.0% | |
| CGAAGATTTGATAAACAATC+CGG | + | chr8_1:54131475-54131494 | Msa1200990:CDS | 30.0% | |
| TAGAAGATATTGTCAACTGT+TGG | + | chr8_1:54131733-54131752 | Msa1200990:CDS | 30.0% | |
| AGAAGATATTGTCAACTGTT+GGG | + | chr8_1:54131734-54131753 | Msa1200990:CDS | 30.0% | |
| AACTCTCTACTCTTCAAAAA+TGG | + | chr8_1:54130523-54130542 | Msa1200990:CDS | 30.0% | |
| ACTCTCTACTCTTCAAAAAT+GGG | + | chr8_1:54130524-54130543 | Msa1200990:CDS | 30.0% | |
| TGTTTACTACCTTTCTTTCT+TGG | + | chr8_1:54130578-54130597 | Msa1200990:CDS | 30.0% | |
| TGATCAAACATAGAAGAAGT+AGG | - | chr8_1:54130761-54130780 | None:intergenic | 30.0% | |
| AGCAGTTATGAAACTATTGT+AGG | - | chr8_1:54130834-54130853 | None:intergenic | 30.0% | |
| !! | AATGTTTTTGAGAATGTAGG+AGG | + | chr8_1:54131106-54131125 | Msa1200990:intron | 30.0% |
| !! | ATGTTTTTGAGAATGTAGGA+GGG | + | chr8_1:54131107-54131126 | Msa1200990:intron | 30.0% |
| ATGGTTTGATATTTAGATGG+GGG | - | chr8_1:54131322-54131341 | None:intergenic | 30.0% | |
| CATGGTTTGATATTTAGATG+GGG | - | chr8_1:54131323-54131342 | None:intergenic | 30.0% | |
| ATGAGTGTTTAGTGAACTAA+TGG | + | chr8_1:54131395-54131414 | Msa1200990:intron | 30.0% | |
| TGAGTGTTTAGTGAACTAAT+GGG | + | chr8_1:54131396-54131415 | Msa1200990:intron | 30.0% | |
| CGAAGATTTGATAAACAATC+CGG | + | chr8_1:54131475-54131494 | Msa1200990:CDS | 30.0% | |
| TAGAAGATATTGTCAACTGT+TGG | + | chr8_1:54131733-54131752 | Msa1200990:CDS | 30.0% | |
| AGAAGATATTGTCAACTGTT+GGG | + | chr8_1:54131734-54131753 | Msa1200990:CDS | 30.0% | |
| TGTTGCCACAATAACCAAAT+TGG | - | chr8_1:54130670-54130689 | None:intergenic | 35.0% | |
| ! | ATAGAAGAAGTAGGTGTTGT+TGG | - | chr8_1:54130752-54130771 | None:intergenic | 35.0% |
| CAAACTTCTCATGAAACTAC+AGG | + | chr8_1:54130929-54130948 | Msa1200990:CDS | 35.0% | |
| GTCACAATCAATAGTGTTTG+AGG | + | chr8_1:54131080-54131099 | Msa1200990:intron | 35.0% | |
| ! | GTATGGTTTGAAATGCTAGA+GGG | - | chr8_1:54131300-54131319 | None:intergenic | 35.0% |
| TTGATATTTAGATGGGGGTA+TGG | - | chr8_1:54131317-54131336 | None:intergenic | 35.0% | |
| ATCTTCCAGTAATCACATCA+TGG | - | chr8_1:54131583-54131602 | None:intergenic | 35.0% | |
| ATGATGTGATTACTGGAAGA+TGG | + | chr8_1:54131582-54131601 | Msa1200990:CDS | 35.0% | |
| GTGATCACCAACATAATCAA+CGG | + | chr8_1:54131653-54131672 | Msa1200990:CDS | 35.0% | |
| ATCTTCTATAAAACCCGATC+CGG | - | chr8_1:54131721-54131740 | None:intergenic | 35.0% | |
| ACTTGGATTGCTACAATCAA+AGG | + | chr8_1:54131774-54131793 | Msa1200990:CDS | 35.0% | |
| TGTTGCCACAATAACCAAAT+TGG | - | chr8_1:54130670-54130689 | None:intergenic | 35.0% | |
| ! | ATAGAAGAAGTAGGTGTTGT+TGG | - | chr8_1:54130752-54130771 | None:intergenic | 35.0% |
| CAAACTTCTCATGAAACTAC+AGG | + | chr8_1:54130929-54130948 | Msa1200990:CDS | 35.0% | |
| GTCACAATCAATAGTGTTTG+AGG | + | chr8_1:54131080-54131099 | Msa1200990:intron | 35.0% | |
| ! | GTATGGTTTGAAATGCTAGA+GGG | - | chr8_1:54131300-54131319 | None:intergenic | 35.0% |
| TTGATATTTAGATGGGGGTA+TGG | - | chr8_1:54131317-54131336 | None:intergenic | 35.0% | |
| ATCTTCCAGTAATCACATCA+TGG | - | chr8_1:54131583-54131602 | None:intergenic | 35.0% | |
| ATGATGTGATTACTGGAAGA+TGG | + | chr8_1:54131582-54131601 | Msa1200990:CDS | 35.0% | |
| GTGATCACCAACATAATCAA+CGG | + | chr8_1:54131653-54131672 | Msa1200990:CDS | 35.0% | |
| ATCTTCTATAAAACCCGATC+CGG | - | chr8_1:54131721-54131740 | None:intergenic | 35.0% | |
| ACTTGGATTGCTACAATCAA+AGG | + | chr8_1:54131774-54131793 | Msa1200990:CDS | 35.0% | |
| ! | TTGGTGTCTAACATGAACGA+GGG | - | chr8_1:54130500-54130519 | None:intergenic | 40.0% |
| !! | TTTGGTGTCTAACATGAACG+AGG | - | chr8_1:54130501-54130520 | None:intergenic | 40.0% |
| TGAAGAGTAGAGAGTTGCTT+TGG | - | chr8_1:54130519-54130538 | None:intergenic | 40.0% | |
| ! | GCTTTGGATCCAAGAAAGAA+AGG | - | chr8_1:54130590-54130609 | None:intergenic | 40.0% |
| CAATGTGGTAGACAAGCTAA+TGG | + | chr8_1:54130614-54130633 | Msa1200990:CDS | 40.0% | |
| TGCAGCCAATTTGGTTATTG+TGG | + | chr8_1:54130662-54130681 | Msa1200990:CDS | 40.0% | |
| ACCAAATCCGGGAAAAGAAT+TGG | - | chr8_1:54130858-54130877 | None:intergenic | 40.0% | |
| AAGCACAAATTTCGCGCTTA+CGG | - | chr8_1:54130901-54130920 | None:intergenic | 40.0% | |
| CGCGAAATTTGTGCTTTCTT+AGG | + | chr8_1:54130905-54130924 | Msa1200990:CDS | 40.0% | |
| !! | TTTTTGAGAATGTAGGAGGG+TGG | + | chr8_1:54131110-54131129 | Msa1200990:intron | 40.0% |
| !! | TATCTTTTACCAGGAGCACA+TGG | - | chr8_1:54131226-54131245 | None:intergenic | 40.0% |
| GCTCCTGGTAAAAGATACTA+CGG | + | chr8_1:54131229-54131248 | Msa1200990:CDS | 40.0% | |
| ! | GCTTACTGAGTGAGTTGAAT+TGG | - | chr8_1:54131262-54131281 | None:intergenic | 40.0% |
| ! | GGTATGGTTTGAAATGCTAG+AGG | - | chr8_1:54131301-54131320 | None:intergenic | 40.0% |
| AACTACAATTATGGTCCAGC+CGG | + | chr8_1:54131440-54131459 | Msa1200990:CDS | 40.0% | |
| ! | ATCTTCGTTAATGGCTCTAC+CGG | - | chr8_1:54131462-54131481 | None:intergenic | 40.0% |
| GCATTTGAGGACACTAAATC+CGG | - | chr8_1:54131497-54131516 | None:intergenic | 40.0% | |
| GTAATCACATCATGGCTTGA+TGG | - | chr8_1:54131575-54131594 | None:intergenic | 40.0% | |
| TCAAGCCATGATGTGATTAC+TGG | + | chr8_1:54131575-54131594 | Msa1200990:CDS | 40.0% | |
| ATCACCAACATAATCAACGG+TGG | + | chr8_1:54131656-54131675 | Msa1200990:CDS | 40.0% | |
| TCACCAACATAATCAACGGT+GGG | + | chr8_1:54131657-54131676 | Msa1200990:CDS | 40.0% | |
| ATATTGTCAACTGTTGGGAG+TGG | + | chr8_1:54131739-54131758 | Msa1200990:CDS | 40.0% | |
| TATTGTCAACTGTTGGGAGT+GGG | + | chr8_1:54131740-54131759 | Msa1200990:CDS | 40.0% | |
| ! | TTGGTGTCTAACATGAACGA+GGG | - | chr8_1:54130500-54130519 | None:intergenic | 40.0% |
| !! | TTTGGTGTCTAACATGAACG+AGG | - | chr8_1:54130501-54130520 | None:intergenic | 40.0% |
| TGAAGAGTAGAGAGTTGCTT+TGG | - | chr8_1:54130519-54130538 | None:intergenic | 40.0% | |
| ! | GCTTTGGATCCAAGAAAGAA+AGG | - | chr8_1:54130590-54130609 | None:intergenic | 40.0% |
| CAATGTGGTAGACAAGCTAA+TGG | + | chr8_1:54130614-54130633 | Msa1200990:CDS | 40.0% | |
| TGCAGCCAATTTGGTTATTG+TGG | + | chr8_1:54130662-54130681 | Msa1200990:CDS | 40.0% | |
| ACCAAATCCGGGAAAAGAAT+TGG | - | chr8_1:54130858-54130877 | None:intergenic | 40.0% | |
| AAGCACAAATTTCGCGCTTA+CGG | - | chr8_1:54130901-54130920 | None:intergenic | 40.0% | |
| CGCGAAATTTGTGCTTTCTT+AGG | + | chr8_1:54130905-54130924 | Msa1200990:CDS | 40.0% | |
| !! | TTTTTGAGAATGTAGGAGGG+TGG | + | chr8_1:54131110-54131129 | Msa1200990:intron | 40.0% |
| !! | TATCTTTTACCAGGAGCACA+TGG | - | chr8_1:54131226-54131245 | None:intergenic | 40.0% |
| GCTCCTGGTAAAAGATACTA+CGG | + | chr8_1:54131229-54131248 | Msa1200990:CDS | 40.0% | |
| ! | GCTTACTGAGTGAGTTGAAT+TGG | - | chr8_1:54131262-54131281 | None:intergenic | 40.0% |
| ! | GGTATGGTTTGAAATGCTAG+AGG | - | chr8_1:54131301-54131320 | None:intergenic | 40.0% |
| AACTACAATTATGGTCCAGC+CGG | + | chr8_1:54131440-54131459 | Msa1200990:CDS | 40.0% | |
| ! | ATCTTCGTTAATGGCTCTAC+CGG | - | chr8_1:54131462-54131481 | None:intergenic | 40.0% |
| GCATTTGAGGACACTAAATC+CGG | - | chr8_1:54131497-54131516 | None:intergenic | 40.0% | |
| GTAATCACATCATGGCTTGA+TGG | - | chr8_1:54131575-54131594 | None:intergenic | 40.0% | |
| TCAAGCCATGATGTGATTAC+TGG | + | chr8_1:54131575-54131594 | Msa1200990:CDS | 40.0% | |
| ATCACCAACATAATCAACGG+TGG | + | chr8_1:54131656-54131675 | Msa1200990:CDS | 40.0% | |
| TCACCAACATAATCAACGGT+GGG | + | chr8_1:54131657-54131676 | Msa1200990:CDS | 40.0% | |
| ATATTGTCAACTGTTGGGAG+TGG | + | chr8_1:54131739-54131758 | Msa1200990:CDS | 40.0% | |
| TATTGTCAACTGTTGGGAGT+GGG | + | chr8_1:54131740-54131759 | Msa1200990:CDS | 40.0% | |
| TCTACCACATTGCTGAGCTT+TGG | - | chr8_1:54130606-54130625 | None:intergenic | 45.0% | |
| ATGGAGCTCTTTGCGCAAAT+AGG | + | chr8_1:54130633-54130652 | Msa1200990:CDS | 45.0% | |
| AGGTTCTGTTGCAGCCAATT+TGG | + | chr8_1:54130653-54130672 | Msa1200990:CDS | 45.0% | |
| GTGTTGAAGTAGGTGTACAC+TGG | - | chr8_1:54130724-54130743 | None:intergenic | 45.0% | |
| !! | GAAGTAGGTGTTGTTGGTGT+CGG | - | chr8_1:54130746-54130765 | None:intergenic | 45.0% |
| AATCCATTTCCAGCACAACG+TGG | - | chr8_1:54130806-54130825 | None:intergenic | 45.0% | |
| ! | ACTGCTGCCAATTCTTTTCC+CGG | + | chr8_1:54130848-54130867 | Msa1200990:CDS | 45.0% |
| ! | GCCAATTCTTTTCCCGGATT+TGG | + | chr8_1:54130854-54130873 | Msa1200990:CDS | 45.0% |
| ! | TTTCCCGGATTTGGTACTAC+CGG | + | chr8_1:54130863-54130882 | Msa1200990:CDS | 45.0% |
| ATCACCGGTAGTACCAAATC+CGG | - | chr8_1:54130870-54130889 | None:intergenic | 45.0% | |
| ! | CTTACGGGTGTTATCATCAC+CGG | - | chr8_1:54130885-54130904 | None:intergenic | 45.0% |
| AGCACAAATTTCGCGCTTAC+GGG | - | chr8_1:54130900-54130919 | None:intergenic | 45.0% | |
| ACTATTGTACACCCGGAACT+TGG | + | chr8_1:54131200-54131219 | Msa1200990:CDS | 45.0% | |
| ! | CTGCCGTAGTATCTTTTACC+AGG | - | chr8_1:54131235-54131254 | None:intergenic | 45.0% |
| GGTAAAAGATACTACGGCAG+AGG | + | chr8_1:54131235-54131254 | Msa1200990:CDS | 45.0% | |
| GAATGACACGACTGCATTTG+AGG | - | chr8_1:54131510-54131529 | None:intergenic | 45.0% | |
| ! | CAAATGCAGTCGTGTCATTC+AGG | + | chr8_1:54131510-54131529 | Msa1200990:CDS | 45.0% |
| TGTCATTCAGGACATCCCTA+TGG | + | chr8_1:54131522-54131541 | Msa1200990:CDS | 45.0% | |
| ! | TCAGGACATCCCTATGGTTT+TGG | + | chr8_1:54131528-54131547 | Msa1200990:CDS | 45.0% |
| ! | AAGCCCACCGTTGATTATGT+TGG | - | chr8_1:54131663-54131682 | None:intergenic | 45.0% |
| GTAGCAATCCAAGTTAGCAC+CGG | - | chr8_1:54131768-54131787 | None:intergenic | 45.0% | |
| TCTACCACATTGCTGAGCTT+TGG | - | chr8_1:54130606-54130625 | None:intergenic | 45.0% | |
| ATGGAGCTCTTTGCGCAAAT+AGG | + | chr8_1:54130633-54130652 | Msa1200990:CDS | 45.0% | |
| AGGTTCTGTTGCAGCCAATT+TGG | + | chr8_1:54130653-54130672 | Msa1200990:CDS | 45.0% | |
| GTGTTGAAGTAGGTGTACAC+TGG | - | chr8_1:54130724-54130743 | None:intergenic | 45.0% | |
| !! | GAAGTAGGTGTTGTTGGTGT+CGG | - | chr8_1:54130746-54130765 | None:intergenic | 45.0% |
| AATCCATTTCCAGCACAACG+TGG | - | chr8_1:54130806-54130825 | None:intergenic | 45.0% | |
| ! | ACTGCTGCCAATTCTTTTCC+CGG | + | chr8_1:54130848-54130867 | Msa1200990:CDS | 45.0% |
| ! | GCCAATTCTTTTCCCGGATT+TGG | + | chr8_1:54130854-54130873 | Msa1200990:CDS | 45.0% |
| ! | TTTCCCGGATTTGGTACTAC+CGG | + | chr8_1:54130863-54130882 | Msa1200990:CDS | 45.0% |
| ATCACCGGTAGTACCAAATC+CGG | - | chr8_1:54130870-54130889 | None:intergenic | 45.0% | |
| ! | CTTACGGGTGTTATCATCAC+CGG | - | chr8_1:54130885-54130904 | None:intergenic | 45.0% |
| AGCACAAATTTCGCGCTTAC+GGG | - | chr8_1:54130900-54130919 | None:intergenic | 45.0% | |
| ACTATTGTACACCCGGAACT+TGG | + | chr8_1:54131200-54131219 | Msa1200990:CDS | 45.0% | |
| ! | CTGCCGTAGTATCTTTTACC+AGG | - | chr8_1:54131235-54131254 | None:intergenic | 45.0% |
| GGTAAAAGATACTACGGCAG+AGG | + | chr8_1:54131235-54131254 | Msa1200990:CDS | 45.0% | |
| GAATGACACGACTGCATTTG+AGG | - | chr8_1:54131510-54131529 | None:intergenic | 45.0% | |
| ! | CAAATGCAGTCGTGTCATTC+AGG | + | chr8_1:54131510-54131529 | Msa1200990:CDS | 45.0% |
| TGTCATTCAGGACATCCCTA+TGG | + | chr8_1:54131522-54131541 | Msa1200990:CDS | 45.0% | |
| ! | TCAGGACATCCCTATGGTTT+TGG | + | chr8_1:54131528-54131547 | Msa1200990:CDS | 45.0% |
| ! | AAGCCCACCGTTGATTATGT+TGG | - | chr8_1:54131663-54131682 | None:intergenic | 45.0% |
| GTAGCAATCCAAGTTAGCAC+CGG | - | chr8_1:54131768-54131787 | None:intergenic | 45.0% | |
| GGATCCAAAGCTCAGCAATG+TGG | + | chr8_1:54130599-54130618 | Msa1200990:CDS | 50.0% | |
| !! | GTTGGTGTCGGTGTTGAAGT+AGG | - | chr8_1:54130734-54130753 | None:intergenic | 50.0% |
| CGAAATGATCCACGTTGTGC+TGG | + | chr8_1:54130794-54130813 | Msa1200990:CDS | 50.0% | |
| GATCCACGTTGTGCTGGAAA+TGG | + | chr8_1:54130800-54130819 | Msa1200990:CDS | 50.0% | |
| TCACCGGTAGTACCAAATCC+GGG | - | chr8_1:54130869-54130888 | None:intergenic | 50.0% | |
| AAGCAATATCCCCACGCGTA+TGG | - | chr8_1:54131154-54131173 | None:intergenic | 50.0% | |
| GGTGTACAATAGTCACTCGG+GGG | - | chr8_1:54131193-54131212 | None:intergenic | 50.0% | |
| GGGTGTACAATAGTCACTCG+GGG | - | chr8_1:54131194-54131213 | None:intergenic | 50.0% | |
| CGGGTGTACAATAGTCACTC+GGG | - | chr8_1:54131195-54131214 | None:intergenic | 50.0% | |
| CCGGGTGTACAATAGTCACT+CGG | - | chr8_1:54131196-54131215 | None:intergenic | 50.0% | |
| CCGAGTGACTATTGTACACC+CGG | + | chr8_1:54131193-54131212 | Msa1200990:CDS | 50.0% | |
| CGGGGTCATCCAAAACCATA+GGG | - | chr8_1:54131540-54131559 | None:intergenic | 50.0% | |
| !! | TTGATGGCTTGTTTCCCTGC+GGG | - | chr8_1:54131559-54131578 | None:intergenic | 50.0% |
| !! | CTTGATGGCTTGTTTCCCTG+CGG | - | chr8_1:54131560-54131579 | None:intergenic | 50.0% |
| ! | TTGGTGATCACGCCATATCC+GGG | - | chr8_1:54131644-54131663 | None:intergenic | 50.0% |
| !! | GTTGGTGATCACGCCATATC+CGG | - | chr8_1:54131645-54131664 | None:intergenic | 50.0% |
| ! | ATCAACGGTGGGCTTGAATG+TGG | + | chr8_1:54131668-54131687 | Msa1200990:CDS | 50.0% |
| ! | TCAACGGTGGGCTTGAATGT+GGG | + | chr8_1:54131669-54131688 | Msa1200990:CDS | 50.0% |
| GGATCCAAAGCTCAGCAATG+TGG | + | chr8_1:54130599-54130618 | Msa1200990:CDS | 50.0% | |
| !! | GTTGGTGTCGGTGTTGAAGT+AGG | - | chr8_1:54130734-54130753 | None:intergenic | 50.0% |
| CGAAATGATCCACGTTGTGC+TGG | + | chr8_1:54130794-54130813 | Msa1200990:CDS | 50.0% | |
| GATCCACGTTGTGCTGGAAA+TGG | + | chr8_1:54130800-54130819 | Msa1200990:CDS | 50.0% | |
| TCACCGGTAGTACCAAATCC+GGG | - | chr8_1:54130869-54130888 | None:intergenic | 50.0% | |
| AAGCAATATCCCCACGCGTA+TGG | - | chr8_1:54131154-54131173 | None:intergenic | 50.0% | |
| GGTGTACAATAGTCACTCGG+GGG | - | chr8_1:54131193-54131212 | None:intergenic | 50.0% | |
| GGGTGTACAATAGTCACTCG+GGG | - | chr8_1:54131194-54131213 | None:intergenic | 50.0% | |
| CGGGTGTACAATAGTCACTC+GGG | - | chr8_1:54131195-54131214 | None:intergenic | 50.0% | |
| CCGGGTGTACAATAGTCACT+CGG | - | chr8_1:54131196-54131215 | None:intergenic | 50.0% | |
| CCGAGTGACTATTGTACACC+CGG | + | chr8_1:54131193-54131212 | Msa1200990:CDS | 50.0% | |
| CGGGGTCATCCAAAACCATA+GGG | - | chr8_1:54131540-54131559 | None:intergenic | 50.0% | |
| !! | TTGATGGCTTGTTTCCCTGC+GGG | - | chr8_1:54131559-54131578 | None:intergenic | 50.0% |
| !! | CTTGATGGCTTGTTTCCCTG+CGG | - | chr8_1:54131560-54131579 | None:intergenic | 50.0% |
| ! | TTGGTGATCACGCCATATCC+GGG | - | chr8_1:54131644-54131663 | None:intergenic | 50.0% |
| !! | GTTGGTGATCACGCCATATC+CGG | - | chr8_1:54131645-54131664 | None:intergenic | 50.0% |
| ! | ATCAACGGTGGGCTTGAATG+TGG | + | chr8_1:54131668-54131687 | Msa1200990:CDS | 50.0% |
| ! | TCAACGGTGGGCTTGAATGT+GGG | + | chr8_1:54131669-54131688 | Msa1200990:CDS | 50.0% |
| ! | GGCAACACTGCTGACTACTG+TGG | + | chr8_1:54130683-54130702 | Msa1200990:CDS | 55.0% |
| ! | ACTGCTGACTACTGTGGAGC+TGG | + | chr8_1:54130689-54130708 | Msa1200990:CDS | 55.0% |
| TATGGACCGTCTGGTGCAGT+TGG | - | chr8_1:54131136-54131155 | None:intergenic | 55.0% | |
| ! | AGGAGCACATGGCCAAGTTC+CGG | - | chr8_1:54131215-54131234 | None:intergenic | 55.0% |
| ! | TCGTTAATGGCTCTACCGGC+TGG | - | chr8_1:54131458-54131477 | None:intergenic | 55.0% |
| GCGGGGTCATCCAAAACCAT+AGG | - | chr8_1:54131541-54131560 | None:intergenic | 55.0% | |
| !!! | ATGGTTTTGGATGACCCCGC+AGG | + | chr8_1:54131541-54131560 | Msa1200990:CDS | 55.0% |
| !!! | TGGTTTTGGATGACCCCGCA+GGG | + | chr8_1:54131542-54131561 | Msa1200990:CDS | 55.0% |
| !! | TGATGGCTTGTTTCCCTGCG+GGG | - | chr8_1:54131558-54131577 | None:intergenic | 55.0% |
| GCTGAGTTGTCAGCAGCAGA+TGG | - | chr8_1:54131611-54131630 | None:intergenic | 55.0% | |
| TCTGCTGCTGACAACTCAGC+AGG | + | chr8_1:54131611-54131630 | Msa1200990:CDS | 55.0% | |
| CTGCTGCTGACAACTCAGCA+GGG | + | chr8_1:54131612-54131631 | Msa1200990:CDS | 55.0% | |
| TGGTGATCACGCCATATCCG+GGG | - | chr8_1:54131643-54131662 | None:intergenic | 55.0% | |
| !! | AGGATCCTCGGGTTGAAGAC+CGG | + | chr8_1:54131699-54131718 | Msa1200990:CDS | 55.0% |
| ! | GGCAACACTGCTGACTACTG+TGG | + | chr8_1:54130683-54130702 | Msa1200990:CDS | 55.0% |
| ! | ACTGCTGACTACTGTGGAGC+TGG | + | chr8_1:54130689-54130708 | Msa1200990:CDS | 55.0% |
| TATGGACCGTCTGGTGCAGT+TGG | - | chr8_1:54131136-54131155 | None:intergenic | 55.0% | |
| ! | AGGAGCACATGGCCAAGTTC+CGG | - | chr8_1:54131215-54131234 | None:intergenic | 55.0% |
| ! | TCGTTAATGGCTCTACCGGC+TGG | - | chr8_1:54131458-54131477 | None:intergenic | 55.0% |
| GCGGGGTCATCCAAAACCAT+AGG | - | chr8_1:54131541-54131560 | None:intergenic | 55.0% | |
| !!! | ATGGTTTTGGATGACCCCGC+AGG | + | chr8_1:54131541-54131560 | Msa1200990:CDS | 55.0% |
| !!! | TGGTTTTGGATGACCCCGCA+GGG | + | chr8_1:54131542-54131561 | Msa1200990:CDS | 55.0% |
| !! | TGATGGCTTGTTTCCCTGCG+GGG | - | chr8_1:54131558-54131577 | None:intergenic | 55.0% |
| GCTGAGTTGTCAGCAGCAGA+TGG | - | chr8_1:54131611-54131630 | None:intergenic | 55.0% | |
| TCTGCTGCTGACAACTCAGC+AGG | + | chr8_1:54131611-54131630 | Msa1200990:CDS | 55.0% | |
| CTGCTGCTGACAACTCAGCA+GGG | + | chr8_1:54131612-54131631 | Msa1200990:CDS | 55.0% | |
| TGGTGATCACGCCATATCCG+GGG | - | chr8_1:54131643-54131662 | None:intergenic | 55.0% | |
| !! | AGGATCCTCGGGTTGAAGAC+CGG | + | chr8_1:54131699-54131718 | Msa1200990:CDS | 55.0% |
| ACCAGACGGTCCATACGCGT+GGG | + | chr8_1:54131141-54131160 | Msa1200990:CDS | 60.0% | |
| GGAGCACATGGCCAAGTTCC+GGG | - | chr8_1:54131214-54131233 | None:intergenic | 60.0% | |
| GGAACTTGGCCATGTGCTCC+TGG | + | chr8_1:54131214-54131233 | Msa1200990:CDS | 60.0% | |
| AACTCAGCAGGGAGAGTCCC+CGG | + | chr8_1:54131623-54131642 | Msa1200990:CDS | 60.0% | |
| !! | CCTCGGGTTGAAGACCGGAT+CGG | + | chr8_1:54131704-54131723 | Msa1200990:CDS | 60.0% |
| !! | CTCGGGTTGAAGACCGGATC+GGG | + | chr8_1:54131705-54131724 | Msa1200990:CDS | 60.0% |
| CAACTGTTGGGAGTGGGCAC+CGG | + | chr8_1:54131746-54131765 | Msa1200990:CDS | 60.0% | |
| !! | AGTGGGCACCGGTGCTAACT+TGG | + | chr8_1:54131757-54131776 | Msa1200990:CDS | 60.0% |
| ACCAGACGGTCCATACGCGT+GGG | + | chr8_1:54131141-54131160 | Msa1200990:CDS | 60.0% | |
| GGAGCACATGGCCAAGTTCC+GGG | - | chr8_1:54131214-54131233 | None:intergenic | 60.0% | |
| GGAACTTGGCCATGTGCTCC+TGG | + | chr8_1:54131214-54131233 | Msa1200990:CDS | 60.0% | |
| AACTCAGCAGGGAGAGTCCC+CGG | + | chr8_1:54131623-54131642 | Msa1200990:CDS | 60.0% | |
| !! | CCTCGGGTTGAAGACCGGAT+CGG | + | chr8_1:54131704-54131723 | Msa1200990:CDS | 60.0% |
| !! | CTCGGGTTGAAGACCGGATC+GGG | + | chr8_1:54131705-54131724 | Msa1200990:CDS | 60.0% |
| CAACTGTTGGGAGTGGGCAC+CGG | + | chr8_1:54131746-54131765 | Msa1200990:CDS | 60.0% | |
| !! | AGTGGGCACCGGTGCTAACT+TGG | + | chr8_1:54131757-54131776 | Msa1200990:CDS | 60.0% |
| GGGTGGCCAACTGCACCAGA+CGG | + | chr8_1:54131127-54131146 | Msa1200990:CDS | 65.0% | |
| CACCAGACGGTCCATACGCG+TGG | + | chr8_1:54131140-54131159 | Msa1200990:CDS | 65.0% | |
| CCAGACGGTCCATACGCGTG+GGG | + | chr8_1:54131142-54131161 | Msa1200990:CDS | 65.0% | |
| GCAGGGAGAGTCCCCGGATA+TGG | + | chr8_1:54131629-54131648 | Msa1200990:CDS | 65.0% | |
| ! | GGTGGGCTTGAATGTGGGCG+CGG | + | chr8_1:54131674-54131693 | Msa1200990:CDS | 65.0% |
| GCTTGAATGTGGGCGCGGTC+AGG | + | chr8_1:54131679-54131698 | Msa1200990:CDS | 65.0% | |
| CCGATCCGGTCTTCAACCCG+AGG | - | chr8_1:54131707-54131726 | None:intergenic | 65.0% | |
| GGGTGGCCAACTGCACCAGA+CGG | + | chr8_1:54131127-54131146 | Msa1200990:CDS | 65.0% | |
| CACCAGACGGTCCATACGCG+TGG | + | chr8_1:54131140-54131159 | Msa1200990:CDS | 65.0% | |
| CCAGACGGTCCATACGCGTG+GGG | + | chr8_1:54131142-54131161 | Msa1200990:CDS | 65.0% | |
| GCAGGGAGAGTCCCCGGATA+TGG | + | chr8_1:54131629-54131648 | Msa1200990:CDS | 65.0% | |
| ! | GGTGGGCTTGAATGTGGGCG+CGG | + | chr8_1:54131674-54131693 | Msa1200990:CDS | 65.0% |
| GCTTGAATGTGGGCGCGGTC+AGG | + | chr8_1:54131679-54131698 | Msa1200990:CDS | 65.0% | |
| CCGATCCGGTCTTCAACCCG+AGG | - | chr8_1:54131707-54131726 | None:intergenic | 65.0% | |
| CCCCACGCGTATGGACCGTC+TGG | - | chr8_1:54131145-54131164 | None:intergenic | 70.0% | |
| GTGGGCGCGGTCAGGATCCT+CGG | + | chr8_1:54131687-54131706 | Msa1200990:CDS | 70.0% | |
| TGGGCGCGGTCAGGATCCTC+GGG | + | chr8_1:54131688-54131707 | Msa1200990:CDS | 70.0% | |
| CCCCACGCGTATGGACCGTC+TGG | - | chr8_1:54131145-54131164 | None:intergenic | 70.0% | |
| GTGGGCGCGGTCAGGATCCT+CGG | + | chr8_1:54131687-54131706 | Msa1200990:CDS | 70.0% | |
| TGGGCGCGGTCAGGATCCTC+GGG | + | chr8_1:54131688-54131707 | Msa1200990:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 54130473 | 54131808 | 54130473 | ID=Msa1200990;Name=Msa1200990 |
| chr8_1 | mRNA | 54130473 | 54131808 | 54130473 | ID=Msa1200990-mRNA-1;Parent=Msa1200990;Name=Msa1200990-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.5|0|1|1|1|3|0|332 |
| chr8_1 | exon | 54130473 | 54130950 | 54130473 | ID=Msa1200990-mRNA-1:exon:17343;Parent=Msa1200990-mRNA-1 |
| chr8_1 | exon | 54131125 | 54131275 | 54131125 | ID=Msa1200990-mRNA-1:exon:17344;Parent=Msa1200990-mRNA-1 |
| chr8_1 | exon | 54131439 | 54131808 | 54131439 | ID=Msa1200990-mRNA-1:exon:17345;Parent=Msa1200990-mRNA-1 |
| chr8_1 | CDS | 54130473 | 54130950 | 54130473 | ID=Msa1200990-mRNA-1:cds;Parent=Msa1200990-mRNA-1 |
| chr8_1 | CDS | 54131125 | 54131275 | 54131125 | ID=Msa1200990-mRNA-1:cds;Parent=Msa1200990-mRNA-1 |
| chr8_1 | CDS | 54131439 | 54131808 | 54131439 | ID=Msa1200990-mRNA-1:cds;Parent=Msa1200990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
