AlfalfaGEDB | Msa0311810

M. sativa cultivar zhongmu-4 / Msa0311810

KEGG: -
GO: -
PFAM: PF14547.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311810	ABD28605.1	74.879	207	44	4	1	206	1	200	2.47e-43	154

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311810	sp\|Q9SU34\|ERLL2_ARATH	52.083	96	39	2	113	204	89	181	2.41e-20	87.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0059880	Msa0311810	-0.807679	4.492230e-50	-8.615850e-47
Msa0139720	Msa0311810	-0.800367	1.490249e-48	-8.615850e-47
Msa0197770	Msa0311810	0.865103	7.525769e-65	-8.615850e-47
Msa0239440	Msa0311810	0.873385	1.532514e-67	-8.615850e-47
Msa0277670	Msa0311810	0.937089	6.101523e-98	-8.615850e-47
Msa0277720	Msa0311810	0.874392	6.998674e-68	-8.615850e-47
Msa0277730	Msa0311810	0.839530	1.499361e-57	-8.615850e-47
Msa0288270	Msa0311810	0.805729	1.159959e-49	-8.615850e-47
Msa0295520	Msa0311810	0.807048	6.114404e-50	-8.615850e-47
Msa0311790	Msa0311810	0.838060	3.599555e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311810	MtrunA17_Chr2g0290571	74.879	207	44	4	1	206	1	200	2.27e-47	154
Msa0311810	MtrunA17_Chr2g0290561	74.879	207	40	3	1	206	1	196	9.05e-43	142
Msa0311810	MtrunA17_Chr1g0149481	44.776	134	54	4	74	204	47	163	4.43e-25	95.9
Msa0311810	MtrunA17_Chr2g0290531	50.617	81	38	1	126	204	179	259	2.54e-21	88.6
Msa0311810	MtrunA17_Chr4g0056371	48.718	78	35	2	131	204	55	131	6.74e-19	79.0
Msa0311810	MtrunA17_Chr4g0060391	47.436	78	36	2	131	204	46	122	5.47e-18	76.3
Msa0311810	MtrunA17_Chr1g0149471	45.238	84	41	2	126	204	126	209	7.04e-18	78.2
Msa0311810	MtrunA17_Chr4g0056411	50.633	79	35	1	131	205	91	169	7.38e-18	77.4
Msa0311810	MtrunA17_Chr2g0290521	50.649	77	34	2	131	204	51	126	3.18e-17	74.7
Msa0311810	MtrunA17_Chr4g0056391	52.564	78	33	1	131	204	65	142	3.38e-17	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311810	AT5G46890.1	50.562	89	43	1	117	204	38	126	2.53e-23	90.9
Msa0311810	AT5G46900.1	54.667	75	33	1	131	204	52	126	2.09e-21	85.9
Msa0311810	AT4G12490.1	52.083	96	39	2	113	204	89	181	2.45e-21	87.0
Msa0311810	AT4G12480.1	56.410	78	30	1	131	204	90	167	2.55e-20	84.3
Msa0311810	AT4G12500.1	55.128	78	31	1	131	204	99	176	4.31e-20	84.0
Msa0311810	AT4G12470.1	53.846	78	32	1	131	204	83	160	2.06e-19	81.6
Msa0311810	AT4G12520.1	51.282	78	34	2	131	204	51	128	6.83e-19	79.3
Msa0311810	AT4G12510.1	51.282	78	34	2	131	204	51	128	6.83e-19	79.3
Msa0311810	AT2G45180.1	49.351	77	36	1	131	204	57	133	2.62e-18	77.8
Msa0311810	AT1G12100.1	41.667	96	52	1	113	204	36	131	1.38e-17	75.9

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Find 71 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTTCAAAGTGTGT+TGG	0.604168	2_4:-6702795	Msa0311810:CDS
AAACATGGTGATGGTGGTGG+TGG	0.429540	2_4:+6702699	None:intergenic
ACCACAGGTGGTGGTGTTGA+AGG	0.497195	2_4:+6702651	None:intergenic
ACGACGACATACGAAACTGG+CGG	0.652934	2_4:+6702197	None:intergenic
ACTGTGGGTGGTGGTGTGGA+AGG	0.518532	2_4:+6702609	None:intergenic
AGTATGAACAGGTGGTGGTG+TGG	0.619838	2_4:+6702674	None:intergenic
ATAATAGGTGGTGATGGAGA+AGG	0.546891	2_4:+6702555	None:intergenic
ATACGTTGGCGCAAATGTTC+AGG	0.359112	2_4:+6702397	None:intergenic
ATAGGTGGTGATGGAGAAGG+AGG	0.573916	2_4:+6702558	None:intergenic
ATCAACTGTGGGTGGTGGTG+TGG	0.547443	2_4:+6702605	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAGACCAAAAGGAGATTA+AGG	+	chr2_4:6702235-6702254	None:intergenic	35.0%
GAATAATCTTGAACCGTTGT+GGG	-	chr2_4:6702756-6702775	Msa0311810:CDS	35.0%
CAACAAGAGTAGAGACCAAA+AGG	+	chr2_4:6702244-6702263	None:intergenic	40.0%
TGCACTCAGAGCTAATATCT+TGG	-	chr2_4:6702703-6702722	Msa0311810:CDS	40.0%
GCACTCAGAGCTAATATCTT+GGG	-	chr2_4:6702704-6702723	Msa0311810:CDS	40.0%
GGAATAATCTTGAACCGTTG+TGG	-	chr2_4:6702755-6702774	Msa0311810:CDS	40.0%
TTAACGACGACATACGAAAC+TGG	+	chr2_4:6702795-6702814	None:intergenic	40.0%
GGTGTGGAAAAACATGGTGA+TGG	+	chr2_4:6702299-6702318	None:intergenic	45.0%
GGAGCTATAATAGGTGGTGA+TGG	+	chr2_4:6702440-6702459	None:intergenic	45.0%
GCTGAAGGAGCTATAATAGG+TGG	+	chr2_4:6702446-6702465	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	6702194	6702814	6702194	ID=Msa0311810;Name=Msa0311810
chr2_4	mRNA	6702194	6702814	6702194	ID=Msa0311810-mRNA-1;Parent=Msa0311810;Name=Msa0311810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|206
chr2_4	exon	6702194	6702814	6702194	ID=Msa0311810-mRNA-1:exon:2609;Parent=Msa0311810-mRNA-1
chr2_4	CDS	6702194	6702814	6702194	ID=Msa0311810-mRNA-1:cds;Parent=Msa0311810-mRNA-1

Gene Sequence

>Msa0311810

ATGGGTTCAAAGTGTGTTGGATCCATTTTCATTCTCTTCCTTAATCTCCTTTTGGTCTCTACTCTTGTTGTTGCAAGTCATGTTCCTTTACCACCACCACCACCATCACCATGTTTTTCCACACCACCACCTGTTCATACTCCTTCAACACCACCACCTGTGGTTACTCCTTCGACACCACCTCCTTCCACACCACCACCCACAGTTGATCCTTCGACACCACCACCTTCGACACCTCCTTCTCCATCACCACCTATTATAGCTCCTTCAGCACCTCCACCTTCGACACCCCCACCTACCACACCTCCTTCCACACCACCATCAATTCCTACGACACCTCCTTCTACACCACCATCGACTCCAACGACACCCCCGCAAAATTGTAACCTTTTAAACCTGAACATTTGCGCCAACGTATTGAATATAGTTTTTATCAACCCACGAACAAATCCTTGTTGTAGCCTCATCAGTGGCCTTGTTGATCTAGATGCCTCGGTGTGTCTTTGTGCTGCACTCAGAGCTAATATCTTGGGAATACGTCTTAACATCAATGCTGACTTGGGAATAATCTTGAACCGTTGTGGGCGTGATAGGCCCGCCAGTTTCGTATGTCGTCGTTAA

Protein sequence

>Msa0311810

MGSKCVGSIFILFLNLLLVSTLVVASHVPLPPPPPSPCFSTPPPVHTPSTPPPVVTPSTPPPSTPPPTVDPSTPPPSTPPSPSPPIIAPSAPPPSTPPPTTPPSTPPSIPTTPPSTPPSTPTTPPQNCNLLNLNICANVLNIVFINPRTNPCCSLISGLVDLDASVCLCAALRANILGIRLNINADLGIILNRCGRDRPASFVCRR*