Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0311810 | ABD28605.1 | 74.879 | 207 | 44 | 4 | 1 | 206 | 1 | 200 | 2.47e-43 | 154 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0311810 | sp|Q9SU34|ERLL2_ARATH | 52.083 | 96 | 39 | 2 | 113 | 204 | 89 | 181 | 2.41e-20 | 87.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0059880 | Msa0311810 | -0.807679 | 4.492230e-50 | -8.615850e-47 |
Msa0139720 | Msa0311810 | -0.800367 | 1.490249e-48 | -8.615850e-47 |
Msa0197770 | Msa0311810 | 0.865103 | 7.525769e-65 | -8.615850e-47 |
Msa0239440 | Msa0311810 | 0.873385 | 1.532514e-67 | -8.615850e-47 |
Msa0277670 | Msa0311810 | 0.937089 | 6.101523e-98 | -8.615850e-47 |
Msa0277720 | Msa0311810 | 0.874392 | 6.998674e-68 | -8.615850e-47 |
Msa0277730 | Msa0311810 | 0.839530 | 1.499361e-57 | -8.615850e-47 |
Msa0288270 | Msa0311810 | 0.805729 | 1.159959e-49 | -8.615850e-47 |
Msa0295520 | Msa0311810 | 0.807048 | 6.114404e-50 | -8.615850e-47 |
Msa0311790 | Msa0311810 | 0.838060 | 3.599555e-57 | -8.615850e-47 |
Msa0311810 | Msa0331780 | 0.821861 | 3.223666e-53 | -8.615850e-47 |
Msa0311810 | Msa0418000 | 0.811875 | 5.625280e-51 | -8.615850e-47 |
Msa0311810 | Msa0517300 | 0.802677 | 5.008184e-49 | -8.615850e-47 |
Msa0311810 | Msa0621770 | 0.818358 | 2.043454e-52 | -8.615850e-47 |
Msa0311810 | Msa0796430 | -0.801371 | 9.291500e-49 | -8.615850e-47 |
Msa0311810 | Msa0834270 | -0.814376 | 1.589879e-51 | -8.615850e-47 |
Msa0311810 | Msa1028490 | 0.814335 | 1.623515e-51 | -8.615850e-47 |
Msa0311810 | Msa1081600 | 0.824707 | 6.975922e-54 | -8.615850e-47 |
Msa0311810 | Msa1112870 | 0.831545 | 1.571261e-55 | -8.615850e-47 |
Msa0311810 | Msa1132560 | -0.802136 | 6.472842e-49 | -8.615850e-47 |
Msa0311810 | Msa1166370 | 0.824012 | 1.016174e-53 | -8.615850e-47 |
Msa0311810 | Msa1174110 | 0.836245 | 1.047544e-56 | -8.615850e-47 |
Msa0311810 | Msa1186210 | 0.814623 | 1.402157e-51 | -8.615850e-47 |
Msa0311810 | Msa1200990 | 0.803644 | 3.159237e-49 | -8.615850e-47 |
Msa0311810 | Msa1287160 | 0.827963 | 1.170185e-54 | -8.615850e-47 |
Msa0311810 | Msa1287340 | 0.818615 | 1.787356e-52 | -8.615850e-47 |
Msa0311810 | Msa1345400 | 0.889615 | 2.067028e-73 | -8.615850e-47 |
Msa0311810 | Msa1355260 | 0.805666 | 1.195776e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0311810 | MtrunA17_Chr2g0290571 | 74.879 | 207 | 44 | 4 | 1 | 206 | 1 | 200 | 2.27e-47 | 154 |
Msa0311810 | MtrunA17_Chr2g0290561 | 74.879 | 207 | 40 | 3 | 1 | 206 | 1 | 196 | 9.05e-43 | 142 |
Msa0311810 | MtrunA17_Chr1g0149481 | 44.776 | 134 | 54 | 4 | 74 | 204 | 47 | 163 | 4.43e-25 | 95.9 |
Msa0311810 | MtrunA17_Chr2g0290531 | 50.617 | 81 | 38 | 1 | 126 | 204 | 179 | 259 | 2.54e-21 | 88.6 |
Msa0311810 | MtrunA17_Chr4g0056371 | 48.718 | 78 | 35 | 2 | 131 | 204 | 55 | 131 | 6.74e-19 | 79.0 |
Msa0311810 | MtrunA17_Chr4g0060391 | 47.436 | 78 | 36 | 2 | 131 | 204 | 46 | 122 | 5.47e-18 | 76.3 |
Msa0311810 | MtrunA17_Chr1g0149471 | 45.238 | 84 | 41 | 2 | 126 | 204 | 126 | 209 | 7.04e-18 | 78.2 |
Msa0311810 | MtrunA17_Chr4g0056411 | 50.633 | 79 | 35 | 1 | 131 | 205 | 91 | 169 | 7.38e-18 | 77.4 |
Msa0311810 | MtrunA17_Chr2g0290521 | 50.649 | 77 | 34 | 2 | 131 | 204 | 51 | 126 | 3.18e-17 | 74.7 |
Msa0311810 | MtrunA17_Chr4g0056391 | 52.564 | 78 | 33 | 1 | 131 | 204 | 65 | 142 | 3.38e-17 | 75.1 |
Msa0311810 | MtrunA17_Chr4g0056401 | 50.000 | 78 | 35 | 1 | 131 | 204 | 56 | 133 | 1.03e-15 | 70.9 |
Msa0311810 | MtrunA17_Chr3g0137521 | 46.154 | 78 | 38 | 2 | 131 | 204 | 52 | 129 | 2.71e-14 | 67.0 |
Msa0311810 | MtrunA17_Chr1g0149491 | 35.714 | 112 | 54 | 3 | 98 | 204 | 52 | 150 | 5.31e-13 | 63.9 |
Msa0311810 | MtrunA17_Chr3g0137531 | 50.943 | 53 | 26 | 0 | 152 | 204 | 76 | 128 | 9.14e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0311810 | AT5G46890.1 | 50.562 | 89 | 43 | 1 | 117 | 204 | 38 | 126 | 2.53e-23 | 90.9 |
Msa0311810 | AT5G46900.1 | 54.667 | 75 | 33 | 1 | 131 | 204 | 52 | 126 | 2.09e-21 | 85.9 |
Msa0311810 | AT4G12490.1 | 52.083 | 96 | 39 | 2 | 113 | 204 | 89 | 181 | 2.45e-21 | 87.0 |
Msa0311810 | AT4G12480.1 | 56.410 | 78 | 30 | 1 | 131 | 204 | 90 | 167 | 2.55e-20 | 84.3 |
Msa0311810 | AT4G12500.1 | 55.128 | 78 | 31 | 1 | 131 | 204 | 99 | 176 | 4.31e-20 | 84.0 |
Msa0311810 | AT4G12470.1 | 53.846 | 78 | 32 | 1 | 131 | 204 | 83 | 160 | 2.06e-19 | 81.6 |
Msa0311810 | AT4G12520.1 | 51.282 | 78 | 34 | 2 | 131 | 204 | 51 | 128 | 6.83e-19 | 79.3 |
Msa0311810 | AT4G12510.1 | 51.282 | 78 | 34 | 2 | 131 | 204 | 51 | 128 | 6.83e-19 | 79.3 |
Msa0311810 | AT2G45180.1 | 49.351 | 77 | 36 | 1 | 131 | 204 | 57 | 133 | 2.62e-18 | 77.8 |
Msa0311810 | AT1G12100.1 | 41.667 | 96 | 52 | 1 | 113 | 204 | 36 | 131 | 1.38e-17 | 75.9 |
Msa0311810 | AT4G12545.1 | 48.936 | 94 | 36 | 4 | 116 | 204 | 21 | 107 | 6.08e-17 | 73.6 |
Msa0311810 | AT4G12550.1 | 42.857 | 112 | 56 | 4 | 98 | 204 | 2 | 110 | 1.09e-16 | 73.2 |
Msa0311810 | AT1G62510.1 | 51.282 | 78 | 34 | 1 | 131 | 204 | 72 | 149 | 1.84e-16 | 73.6 |
Msa0311810 | AT4G22460.1 | 43.617 | 94 | 46 | 3 | 113 | 202 | 40 | 130 | 1.59e-15 | 70.5 |
Msa0311810 | AT4G00165.1 | 41.250 | 80 | 43 | 2 | 129 | 204 | 49 | 128 | 4.95e-14 | 66.6 |
Msa0311810 | AT4G00165.2 | 41.250 | 80 | 43 | 2 | 129 | 204 | 49 | 128 | 4.95e-14 | 66.6 |
Msa0311810 | AT4G12530.1 | 43.038 | 79 | 42 | 1 | 129 | 204 | 37 | 115 | 2.59e-13 | 64.3 |
Msa0311810 | AT1G12090.1 | 40.909 | 110 | 45 | 2 | 99 | 204 | 44 | 137 | 2.59e-11 | 59.7 |
Find 71 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCAAATGTTCAGGTTTAAA+AGG | 0.204426 | 2_4:+6702406 | None:intergenic |
TCTCTTCCTTAATCTCCTTT+TGG | 0.272655 | 2_4:-6702760 | Msa0311810:CDS |
GTGGAAGGAGGTGTGGTAGG+TGG | 0.274444 | 2_4:+6702501 | None:intergenic |
TGGAAGGAGGTGTGGTAGGT+GGG | 0.286221 | 2_4:+6702502 | None:intergenic |
ATTAAGGAAGAGAATGAAAA+TGG | 0.290274 | 2_4:+6702770 | None:intergenic |
GGAAGGAGGTGTGGTAGGTG+GGG | 0.297605 | 2_4:+6702503 | None:intergenic |
TAGAGACCAAAAGGAGATTA+AGG | 0.298692 | 2_4:+6702754 | None:intergenic |
ATACGTTGGCGCAAATGTTC+AGG | 0.359112 | 2_4:+6702397 | None:intergenic |
TGAACCGTTGTGGGCGTGAT+AGG | 0.385447 | 2_4:-6702221 | Msa0311810:CDS |
GGTGGTGGTGTGGAAGGAGG+TGG | 0.386380 | 2_4:+6702615 | None:intergenic |
GGTGCTGAAGGAGCTATAAT+AGG | 0.409389 | 2_4:+6702540 | None:intergenic |
GAAGGAGGTGTGGTAGGTGG+GGG | 0.411184 | 2_4:+6702504 | None:intergenic |
GGAGGTGTCGTAGGAATTGA+TGG | 0.412771 | 2_4:+6702474 | None:intergenic |
AAACATGGTGATGGTGGTGG+TGG | 0.429540 | 2_4:+6702699 | None:intergenic |
TTAACGACGACATACGAAAC+TGG | 0.437551 | 2_4:+6702194 | None:intergenic |
CATGGTGATGGTGGTGGTGG+TGG | 0.441525 | 2_4:+6702702 | None:intergenic |
GGTGTGGAAGGAGGTGTGGT+AGG | 0.444236 | 2_4:+6702498 | None:intergenic |
GGAGTCGATGGTGGTGTAGA+AGG | 0.446829 | 2_4:+6702453 | None:intergenic |
GTGGGTGGTGGTGTGGAAGG+AGG | 0.451417 | 2_4:+6702612 | None:intergenic |
CAACAAGAGTAGAGACCAAA+AGG | 0.469234 | 2_4:+6702745 | None:intergenic |
TGCACTCAGAGCTAATATCT+TGG | 0.474145 | 2_4:-6702283 | Msa0311810:CDS |
GCACTCAGAGCTAATATCTT+GGG | 0.475433 | 2_4:-6702282 | Msa0311810:CDS |
GAATAATCTTGAACCGTTGT+GGG | 0.482405 | 2_4:-6702230 | Msa0311810:CDS |
ACCACAGGTGGTGGTGTTGA+AGG | 0.497195 | 2_4:+6702651 | None:intergenic |
GGAGCTATAATAGGTGGTGA+TGG | 0.499770 | 2_4:+6702549 | None:intergenic |
TCTTAACATCAATGCTGACT+TGG | 0.513922 | 2_4:-6702253 | Msa0311810:CDS |
ACTGTGGGTGGTGGTGTGGA+AGG | 0.518532 | 2_4:+6702609 | None:intergenic |
GGAATAATCTTGAACCGTTG+TGG | 0.519169 | 2_4:-6702231 | Msa0311810:CDS |
GAAGGAGGTGTCGAAGGTGG+TGG | 0.519674 | 2_4:+6702573 | None:intergenic |
GGTGTAGAAGGAGGTGTCGT+AGG | 0.524763 | 2_4:+6702465 | None:intergenic |
TACAACAAGGATTTGTTCGT+GGG | 0.526682 | 2_4:+6702355 | None:intergenic |
CCTTGTTGATCTAGATGCCT+CGG | 0.532285 | 2_4:-6702319 | Msa0311810:CDS |
GTCGAAGGTGGAGGTGCTGA+AGG | 0.535205 | 2_4:+6702528 | None:intergenic |
GGAATTGATGGTGGTGTGGA+AGG | 0.536327 | 2_4:+6702486 | None:intergenic |
GTGGAAGGAGGTGGTGTCGA+AGG | 0.538378 | 2_4:+6702624 | None:intergenic |
GTCGAAGGTGGTGGTGTCGA+AGG | 0.546498 | 2_4:+6702582 | None:intergenic |
ATAATAGGTGGTGATGGAGA+AGG | 0.546891 | 2_4:+6702555 | None:intergenic |
ATCAACTGTGGGTGGTGGTG+TGG | 0.547443 | 2_4:+6702605 | None:intergenic |
TGGTGGTGTGGAAGGAGGTG+TGG | 0.549904 | 2_4:+6702494 | None:intergenic |
CTACAACAAGGATTTGTTCG+TGG | 0.565019 | 2_4:+6702354 | None:intergenic |
GGTGTTGAAGGAGTATGAAC+AGG | 0.565828 | 2_4:+6702663 | None:intergenic |
GATGGAGAAGGAGGTGTCGA+AGG | 0.568848 | 2_4:+6702567 | None:intergenic |
CTTAACATCAATGCTGACTT+GGG | 0.569880 | 2_4:-6702252 | Msa0311810:CDS |
ATAGGTGGTGATGGAGAAGG+AGG | 0.573916 | 2_4:+6702558 | None:intergenic |
GAAGGAGTAACCACAGGTGG+TGG | 0.574063 | 2_4:+6702642 | None:intergenic |
ATTGATGGTGGTGTGGAAGG+AGG | 0.574469 | 2_4:+6702489 | None:intergenic |
CGACGACATACGAAACTGGC+GGG | 0.580767 | 2_4:+6702198 | None:intergenic |
GAAGGATCAACTGTGGGTGG+TGG | 0.590571 | 2_4:+6702600 | None:intergenic |
GGAGAAGGAGGTGTCGAAGG+TGG | 0.595365 | 2_4:+6702570 | None:intergenic |
AAAATGGGTTCAAAGTGTGT+TGG | 0.604168 | 2_4:-6702795 | Msa0311810:CDS |
GATCAACAAGGCCACTGATG+AGG | 0.608971 | 2_4:+6702331 | None:intergenic |
GAAGGAGTATGAACAGGTGG+TGG | 0.609049 | 2_4:+6702669 | None:intergenic |
TCCTTCAACACCACCACCTG+TGG | 0.611196 | 2_4:-6702652 | Msa0311810:CDS |
CGTAGGAATTGATGGTGGTG+TGG | 0.614401 | 2_4:+6702482 | None:intergenic |
AGTATGAACAGGTGGTGGTG+TGG | 0.619838 | 2_4:+6702674 | None:intergenic |
GGTGTCGTTGGAGTCGATGG+TGG | 0.627154 | 2_4:+6702444 | None:intergenic |
GGTGTCGAAGGATCAACTGT+GGG | 0.629264 | 2_4:+6702594 | None:intergenic |
GGTGTCGAAGGAGTAACCAC+AGG | 0.637015 | 2_4:+6702636 | None:intergenic |
CCTTGTTGTAGCCTCATCAG+TGG | 0.641265 | 2_4:-6702342 | Msa0311810:CDS |
GTCGAAGGATCAACTGTGGG+TGG | 0.642906 | 2_4:+6702597 | None:intergenic |
GTCGATGGTGGTGTAGAAGG+AGG | 0.650665 | 2_4:+6702456 | None:intergenic |
ACGACGACATACGAAACTGG+CGG | 0.652934 | 2_4:+6702197 | None:intergenic |
GCTGAAGGAGCTATAATAGG+TGG | 0.664529 | 2_4:+6702543 | None:intergenic |
CCACTGATGAGGCTACAACA+AGG | 0.671797 | 2_4:+6702342 | None:intergenic |
CGGGCCTATCACGCCCACAA+CGG | 0.674677 | 2_4:+6702217 | None:intergenic |
CCGAGGCATCTAGATCAACA+AGG | 0.679099 | 2_4:+6702319 | None:intergenic |
GTCGAAGGAGTAACCACAGG+TGG | 0.682488 | 2_4:+6702639 | None:intergenic |
GTTGAAGGAGTATGAACAGG+TGG | 0.694706 | 2_4:+6702666 | None:intergenic |
TGGTGTCGAAGGATCAACTG+TGG | 0.694920 | 2_4:+6702593 | None:intergenic |
GGTGTCGTAGGAATTGATGG+TGG | 0.714173 | 2_4:+6702477 | None:intergenic |
TGCAGCACAAAGACACACCG+AGG | 0.744286 | 2_4:+6702302 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAAAGGTTACAATTTTG+CGG | + | chr2_4:6702569-6702588 | None:intergenic | 20.0% |
!! | AAAAACTATATTCAATACGT+TGG | + | chr2_4:6702606-6702625 | None:intergenic | 20.0% |
! | ATTAAGGAAGAGAATGAAAA+TGG | + | chr2_4:6702219-6702238 | None:intergenic | 25.0% |
!! | TTAAAAGGTTACAATTTTGC+GGG | + | chr2_4:6702568-6702587 | None:intergenic | 25.0% |
! | TAAAAGGTTACAATTTTGCG+GGG | + | chr2_4:6702567-6702586 | None:intergenic | 30.0% |
! | TCTCTTCCTTAATCTCCTTT+TGG | - | chr2_4:6702226-6702245 | Msa0311810:CDS | 35.0% |
TAGAGACCAAAAGGAGATTA+AGG | + | chr2_4:6702235-6702254 | None:intergenic | 35.0% | |
! | AAAAGGTTACAATTTTGCGG+GGG | + | chr2_4:6702566-6702585 | None:intergenic | 35.0% |
! | CGCAAATGTTCAGGTTTAAA+AGG | + | chr2_4:6702583-6702602 | None:intergenic | 35.0% |
! | TACAACAAGGATTTGTTCGT+GGG | + | chr2_4:6702634-6702653 | None:intergenic | 35.0% |
! | TCTTAACATCAATGCTGACT+TGG | - | chr2_4:6702733-6702752 | Msa0311810:CDS | 35.0% |
!! | CTTAACATCAATGCTGACTT+GGG | - | chr2_4:6702734-6702753 | Msa0311810:CDS | 35.0% |
GAATAATCTTGAACCGTTGT+GGG | - | chr2_4:6702756-6702775 | Msa0311810:CDS | 35.0% | |
CAACAAGAGTAGAGACCAAA+AGG | + | chr2_4:6702244-6702263 | None:intergenic | 40.0% | |
!! | ATAATAGGTGGTGATGGAGA+AGG | + | chr2_4:6702434-6702453 | None:intergenic | 40.0% |
! | CTACAACAAGGATTTGTTCG+TGG | + | chr2_4:6702635-6702654 | None:intergenic | 40.0% |
TGCACTCAGAGCTAATATCT+TGG | - | chr2_4:6702703-6702722 | Msa0311810:CDS | 40.0% | |
GCACTCAGAGCTAATATCTT+GGG | - | chr2_4:6702704-6702723 | Msa0311810:CDS | 40.0% | |
GGAATAATCTTGAACCGTTG+TGG | - | chr2_4:6702755-6702774 | Msa0311810:CDS | 40.0% | |
TTAACGACGACATACGAAAC+TGG | + | chr2_4:6702795-6702814 | None:intergenic | 40.0% | |
!! | GAAAAACATGGTGATGGTGG+TGG | + | chr2_4:6702293-6702312 | None:intergenic | 45.0% |
!! | GTGGAAAAACATGGTGATGG+TGG | + | chr2_4:6702296-6702315 | None:intergenic | 45.0% |
GGTGTGGAAAAACATGGTGA+TGG | + | chr2_4:6702299-6702318 | None:intergenic | 45.0% | |
! | GTTGAAGGAGTATGAACAGG+TGG | + | chr2_4:6702323-6702342 | None:intergenic | 45.0% |
! | GGTGTTGAAGGAGTATGAAC+AGG | + | chr2_4:6702326-6702345 | None:intergenic | 45.0% |
GGAGCTATAATAGGTGGTGA+TGG | + | chr2_4:6702440-6702459 | None:intergenic | 45.0% | |
GCTGAAGGAGCTATAATAGG+TGG | + | chr2_4:6702446-6702465 | None:intergenic | 45.0% | |
! | GGTGCTGAAGGAGCTATAAT+AGG | + | chr2_4:6702449-6702468 | None:intergenic | 45.0% |
ATACGTTGGCGCAAATGTTC+AGG | + | chr2_4:6702592-6702611 | None:intergenic | 45.0% | |
CCTTGTTGATCTAGATGCCT+CGG | - | chr2_4:6702667-6702686 | Msa0311810:CDS | 45.0% | |
!! | AAACATGGTGATGGTGGTGG+TGG | + | chr2_4:6702290-6702309 | None:intergenic | 50.0% |
! | GGTGGTGGTGTGGAAAAACA+TGG | + | chr2_4:6702305-6702324 | None:intergenic | 50.0% |
! | AGTATGAACAGGTGGTGGTG+TGG | + | chr2_4:6702315-6702334 | None:intergenic | 50.0% |
! | GAAGGAGTATGAACAGGTGG+TGG | + | chr2_4:6702320-6702339 | None:intergenic | 50.0% |
! | GGTGTCGAAGGATCAACTGT+GGG | + | chr2_4:6702395-6702414 | None:intergenic | 50.0% |
! | TGGTGTCGAAGGATCAACTG+TGG | + | chr2_4:6702396-6702415 | None:intergenic | 50.0% |
!! | ATAGGTGGTGATGGAGAAGG+AGG | + | chr2_4:6702431-6702450 | None:intergenic | 50.0% |
!! | ATTGATGGTGGTGTGGAAGG+AGG | + | chr2_4:6702500-6702519 | None:intergenic | 50.0% |
!! | GGAATTGATGGTGGTGTGGA+AGG | + | chr2_4:6702503-6702522 | None:intergenic | 50.0% |
!! | CGTAGGAATTGATGGTGGTG+TGG | + | chr2_4:6702507-6702526 | None:intergenic | 50.0% |
! | GGTGTCGTAGGAATTGATGG+TGG | + | chr2_4:6702512-6702531 | None:intergenic | 50.0% |
!! | GGAGGTGTCGTAGGAATTGA+TGG | + | chr2_4:6702515-6702534 | None:intergenic | 50.0% |
CCACTGATGAGGCTACAACA+AGG | + | chr2_4:6702647-6702666 | None:intergenic | 50.0% | |
! | CCTTGTTGTAGCCTCATCAG+TGG | - | chr2_4:6702644-6702663 | Msa0311810:CDS | 50.0% |
GATCAACAAGGCCACTGATG+AGG | + | chr2_4:6702658-6702677 | None:intergenic | 50.0% | |
! | CCGAGGCATCTAGATCAACA+AGG | + | chr2_4:6702670-6702689 | None:intergenic | 50.0% |
ACGACGACATACGAAACTGG+CGG | + | chr2_4:6702792-6702811 | None:intergenic | 50.0% | |
!! | GATGGTGGTGGTGGTGGTAA+AGG | + | chr2_4:6702281-6702300 | None:intergenic | 55.0% |
TCCTTCAACACCACCACCTG+TGG | - | chr2_4:6702334-6702353 | Msa0311810:CDS | 55.0% | |
! | ACCACAGGTGGTGGTGTTGA+AGG | + | chr2_4:6702338-6702357 | None:intergenic | 55.0% |
GAAGGAGTAACCACAGGTGG+TGG | + | chr2_4:6702347-6702366 | None:intergenic | 55.0% | |
GTCGAAGGAGTAACCACAGG+TGG | + | chr2_4:6702350-6702369 | None:intergenic | 55.0% | |
! | GGTGTCGAAGGAGTAACCAC+AGG | + | chr2_4:6702353-6702372 | None:intergenic | 55.0% |
! | ATCAACTGTGGGTGGTGGTG+TGG | + | chr2_4:6702384-6702403 | None:intergenic | 55.0% |
GAAGGATCAACTGTGGGTGG+TGG | + | chr2_4:6702389-6702408 | None:intergenic | 55.0% | |
GTCGAAGGATCAACTGTGGG+TGG | + | chr2_4:6702392-6702411 | None:intergenic | 55.0% | |
!! | GATGGAGAAGGAGGTGTCGA+AGG | + | chr2_4:6702422-6702441 | None:intergenic | 55.0% |
! | TGGAAGGAGGTGTGGTAGGT+GGG | + | chr2_4:6702487-6702506 | None:intergenic | 55.0% |
!! | GGTGTAGAAGGAGGTGTCGT+AGG | + | chr2_4:6702524-6702543 | None:intergenic | 55.0% |
! | GTCGATGGTGGTGTAGAAGG+AGG | + | chr2_4:6702533-6702552 | None:intergenic | 55.0% |
! | GGAGTCGATGGTGGTGTAGA+AGG | + | chr2_4:6702536-6702555 | None:intergenic | 55.0% |
!!! | CAATTTTGCGGGGGTGTCGT+TGG | + | chr2_4:6702557-6702576 | None:intergenic | 55.0% |
TGCAGCACAAAGACACACCG+AGG | + | chr2_4:6702687-6702706 | None:intergenic | 55.0% | |
TGAACCGTTGTGGGCGTGAT+AGG | - | chr2_4:6702765-6702784 | Msa0311810:CDS | 55.0% | |
CGACGACATACGAAACTGGC+GGG | + | chr2_4:6702791-6702810 | None:intergenic | 55.0% | |
!! | CATGGTGATGGTGGTGGTGG+TGG | + | chr2_4:6702287-6702306 | None:intergenic | 60.0% |
! | GTGGAAGGAGGTGGTGTCGA+AGG | + | chr2_4:6702365-6702384 | None:intergenic | 60.0% |
! | ACTGTGGGTGGTGGTGTGGA+AGG | + | chr2_4:6702380-6702399 | None:intergenic | 60.0% |
! | GTCGAAGGTGGTGGTGTCGA+AGG | + | chr2_4:6702407-6702426 | None:intergenic | 60.0% |
!! | GAAGGAGGTGTCGAAGGTGG+TGG | + | chr2_4:6702416-6702435 | None:intergenic | 60.0% |
!! | GGAGAAGGAGGTGTCGAAGG+TGG | + | chr2_4:6702419-6702438 | None:intergenic | 60.0% |
!! | GTCGAAGGTGGAGGTGCTGA+AGG | + | chr2_4:6702461-6702480 | None:intergenic | 60.0% |
! | GAAGGAGGTGTGGTAGGTGG+GGG | + | chr2_4:6702485-6702504 | None:intergenic | 60.0% |
! | GGAAGGAGGTGTGGTAGGTG+GGG | + | chr2_4:6702486-6702505 | None:intergenic | 60.0% |
! | GTGGAAGGAGGTGTGGTAGG+TGG | + | chr2_4:6702488-6702507 | None:intergenic | 60.0% |
! | GGTGTGGAAGGAGGTGTGGT+AGG | + | chr2_4:6702491-6702510 | None:intergenic | 60.0% |
! | TGGTGGTGTGGAAGGAGGTG+TGG | + | chr2_4:6702372-6702391 | None:intergenic | 60.0% |
!! | GGTGTCGTTGGAGTCGATGG+TGG | + | chr2_4:6702545-6702564 | None:intergenic | 60.0% |
! | GGTGGTGGTGTGGAAGGAGG+TGG | + | chr2_4:6702374-6702393 | None:intergenic | 65.0% |
! | GTGGGTGGTGGTGTGGAAGG+AGG | + | chr2_4:6702377-6702396 | None:intergenic | 65.0% |
!! | GTAGGTGGGGGTGTCGAAGG+TGG | + | chr2_4:6702473-6702492 | None:intergenic | 65.0% |
!! | GTGGTAGGTGGGGGTGTCGA+AGG | + | chr2_4:6702476-6702495 | None:intergenic | 65.0% |
!! | GGGGGTGTCGTTGGAGTCGA+TGG | + | chr2_4:6702548-6702567 | None:intergenic | 65.0% |
CGGGCCTATCACGCCCACAA+CGG | + | chr2_4:6702772-6702791 | None:intergenic | 65.0% | |
!! | GGTGGGGGTGTCGAAGGTGG+AGG | + | chr2_4:6702470-6702489 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 6702194 | 6702814 | 6702194 | ID=Msa0311810;Name=Msa0311810 |
chr2_4 | mRNA | 6702194 | 6702814 | 6702194 | ID=Msa0311810-mRNA-1;Parent=Msa0311810;Name=Msa0311810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|206 |
chr2_4 | exon | 6702194 | 6702814 | 6702194 | ID=Msa0311810-mRNA-1:exon:2609;Parent=Msa0311810-mRNA-1 |
chr2_4 | CDS | 6702194 | 6702814 | 6702194 | ID=Msa0311810-mRNA-1:cds;Parent=Msa0311810-mRNA-1 |
Gene Sequence |
Protein sequence |