Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1203200 | XP_003629519.1 | 96.636 | 535 | 14 | 1 | 1 | 535 | 1 | 531 | 0.0 | 1072 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1203200 | sp|Q8W4F0|DAR1_ARATH | 67.438 | 562 | 147 | 5 | 1 | 535 | 1 | 553 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1203200 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053650 | Msa1203200 | 0.807775 | 4.286008e-50 | -8.615850e-47 |
| Msa0093440 | Msa1203200 | 0.816056 | 6.730855e-52 | -8.615850e-47 |
| Msa0144560 | Msa1203200 | 0.955524 | 2.489844e-113 | -8.615850e-47 |
| Msa1203200 | Msa1209560 | 0.804694 | 1.910261e-49 | -8.615850e-47 |
| Msa0912470 | Msa1203200 | 0.804922 | 1.711471e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1203200 | MtrunA17_Chr8g0373781 | 96.636 | 535 | 14 | 1 | 1 | 535 | 1 | 531 | 0.0 | 1072 |
| Msa1203200 | MtrunA17_Chr1g0154501 | 58.022 | 536 | 156 | 9 | 1 | 535 | 1 | 468 | 0.0 | 583 |
| Msa1203200 | MtrunA17_Chr5g0436051 | 65.684 | 373 | 118 | 3 | 163 | 535 | 253 | 615 | 3.70e-175 | 508 |
| Msa1203200 | MtrunA17_Chr5g0403261 | 67.112 | 374 | 83 | 4 | 1 | 342 | 1 | 366 | 1.64e-174 | 496 |
| Msa1203200 | MtrunA17_Chr3g0112601 | 60.244 | 410 | 159 | 4 | 126 | 535 | 107 | 512 | 8.80e-166 | 480 |
| Msa1203200 | MtrunA17_Chr5g0403301 | 73.026 | 304 | 58 | 2 | 232 | 535 | 27 | 306 | 1.02e-151 | 436 |
| Msa1203200 | MtrunA17_Chr5g0403271 | 80.128 | 156 | 28 | 1 | 380 | 535 | 1 | 153 | 2.29e-77 | 240 |
| Msa1203200 | MtrunA17_Chr5g0403291 | 64.516 | 93 | 32 | 1 | 156 | 247 | 374 | 466 | 1.36e-35 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1203200 | AT4G36860.1 | 67.438 | 562 | 147 | 5 | 1 | 535 | 1 | 553 | 0.0 | 729 |
| Msa1203200 | AT4G36860.3 | 64.786 | 585 | 148 | 5 | 1 | 535 | 1 | 577 | 0.0 | 720 |
| Msa1203200 | AT4G36860.2 | 66.075 | 451 | 123 | 4 | 1 | 424 | 1 | 448 | 0.0 | 581 |
| Msa1203200 | AT1G19270.1 | 52.189 | 594 | 162 | 11 | 1 | 535 | 1 | 531 | 0.0 | 572 |
| Msa1203200 | AT1G19270.2 | 52.189 | 594 | 162 | 11 | 1 | 535 | 1 | 531 | 0.0 | 572 |
| Msa1203200 | AT2G39830.3 | 58.797 | 449 | 156 | 7 | 111 | 535 | 75 | 518 | 1.14e-180 | 518 |
| Msa1203200 | AT2G39830.1 | 65.952 | 373 | 122 | 3 | 163 | 535 | 160 | 527 | 2.22e-178 | 513 |
| Msa1203200 | AT2G39830.2 | 65.426 | 376 | 122 | 4 | 163 | 535 | 160 | 530 | 3.96e-176 | 507 |
| Msa1203200 | AT5G66610.1 | 44.250 | 513 | 249 | 11 | 28 | 529 | 65 | 551 | 1.01e-133 | 400 |
| Msa1203200 | AT2G39830.4 | 64.875 | 279 | 95 | 3 | 163 | 440 | 160 | 436 | 4.51e-132 | 391 |
| Msa1203200 | AT5G66610.3 | 48.592 | 426 | 197 | 8 | 111 | 529 | 14 | 424 | 8.59e-131 | 388 |
| Msa1203200 | AT5G66620.1 | 49.406 | 421 | 196 | 8 | 113 | 528 | 232 | 640 | 2.70e-129 | 391 |
| Msa1203200 | AT5G66620.3 | 49.406 | 421 | 196 | 8 | 113 | 528 | 223 | 631 | 4.51e-129 | 390 |
| Msa1203200 | AT5G66620.4 | 49.406 | 421 | 196 | 8 | 113 | 528 | 223 | 631 | 4.51e-129 | 390 |
| Msa1203200 | AT5G66610.2 | 42.037 | 540 | 249 | 12 | 28 | 529 | 65 | 578 | 7.61e-128 | 386 |
| Msa1203200 | AT5G17890.1 | 51.047 | 382 | 175 | 6 | 159 | 535 | 1234 | 1608 | 9.73e-113 | 367 |
| Msa1203200 | AT5G66630.1 | 47.989 | 373 | 176 | 7 | 159 | 528 | 341 | 698 | 5.94e-110 | 343 |
| Msa1203200 | AT5G66640.1 | 47.740 | 354 | 174 | 8 | 182 | 528 | 89 | 438 | 4.44e-101 | 312 |
| Msa1203200 | AT5G66640.7 | 47.740 | 354 | 174 | 8 | 182 | 528 | 89 | 438 | 4.44e-101 | 312 |
| Msa1203200 | AT5G66640.5 | 42.017 | 476 | 218 | 16 | 79 | 528 | 27 | 470 | 6.24e-101 | 313 |
| Msa1203200 | AT5G66640.4 | 47.740 | 354 | 174 | 8 | 182 | 528 | 120 | 469 | 1.27e-100 | 312 |
| Msa1203200 | AT5G66640.3 | 49.383 | 324 | 155 | 7 | 212 | 528 | 10 | 331 | 1.71e-96 | 297 |
| Msa1203200 | AT5G66640.6 | 38.445 | 476 | 231 | 17 | 79 | 528 | 27 | 466 | 9.36e-84 | 268 |
| Msa1203200 | AT5G66640.2 | 42.938 | 354 | 187 | 9 | 182 | 528 | 120 | 465 | 1.39e-83 | 268 |
| Msa1203200 | AT5G66620.2 | 43.463 | 283 | 144 | 7 | 113 | 390 | 223 | 494 | 3.30e-73 | 241 |
Find 137 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCTTATAGCATGATTTA+TGG | 0.186732 | 8_1:+57216542 | None:intergenic |
| AGTATAGAGCACATCCTTTC+TGG | 0.193526 | 8_1:-57215956 | Msa1203200:CDS |
| ATCCTCGTCCTGAATGTTTA+TGG | 0.214368 | 8_1:+57217926 | None:intergenic |
| GTGTCTCGATTCGGCTATTA+TGG | 0.241072 | 8_1:-57215693 | Msa1203200:CDS |
| TAAAGTTGCTGCAATTGTTT+AGG | 0.249877 | 8_1:-57214218 | Msa1203200:three_prime_UTR |
| CTGGTGTAATTATACAATTT+TGG | 0.274807 | 8_1:+57214281 | None:intergenic |
| TGTAATCTATATTTGAATAT+TGG | 0.282668 | 8_1:-57214176 | Msa1203200:three_prime_UTR |
| AACCAGGCAGTGCTCAAGTA+TGG | 0.287660 | 8_1:-57214443 | Msa1203200:CDS |
| CATATTCCTTCTTCAACTTC+AGG | 0.292654 | 8_1:+57214692 | None:intergenic |
| ATGACAAAGCTCAAATATAT+TGG | 0.297534 | 8_1:+57214329 | None:intergenic |
| CATCGACGTATCAGCCTAAA+AGG | 0.297552 | 8_1:+57215190 | None:intergenic |
| CATTCAGGACGAGGATATAC+TGG | 0.299155 | 8_1:-57217919 | Msa1203200:CDS |
| CGAGGATATACTGGGAAATA+TGG | 0.301890 | 8_1:-57217910 | Msa1203200:CDS |
| GTCCTCTGGTTTCAGGTAAA+TGG | 0.302701 | 8_1:+57215397 | None:intergenic |
| AAGCAAAGTCCTCTGGTTTC+AGG | 0.302816 | 8_1:+57215390 | None:intergenic |
| ACCAGACTCTACACAAAATA+AGG | 0.306377 | 8_1:-57214263 | Msa1203200:three_prime_UTR |
| TTTCAGTTTATGTGAATTGT+AGG | 0.314508 | 8_1:-57218029 | Msa1203200:intron |
| GCAGCAAATTCCTATGCTTT+TGG | 0.316779 | 8_1:-57215600 | Msa1203200:CDS |
| CATGCTTGGCTTAGACTAAA+AGG | 0.324541 | 8_1:-57214820 | Msa1203200:intron |
| AACTTCCGGTCATTCGGATA+TGG | 0.336770 | 8_1:+57214402 | None:intergenic |
| ATATTTGAATATTGGCAGTT+TGG | 0.338306 | 8_1:-57214168 | Msa1203200:three_prime_UTR |
| GGCGAAAAGAGGTTTGTAAA+AGG | 0.349058 | 8_1:+57217140 | None:intergenic |
| ACCAAGTTCCTTCTCAAAAT+CGG | 0.357058 | 8_1:+57214532 | None:intergenic |
| TATATTTATAGGTTACTAAC+AGG | 0.360204 | 8_1:-57214868 | Msa1203200:intron |
| AAAGTTGCTGCAATTGTTTA+GGG | 0.374475 | 8_1:-57214217 | Msa1203200:three_prime_UTR |
| TCATGACAGTATTCCATGTC+TGG | 0.400326 | 8_1:-57216577 | Msa1203200:intron |
| CTACAGAAAATAAGATTGTA+TGG | 0.408396 | 8_1:-57217980 | Msa1203200:exon |
| TTACCATAAATCATGCTATA+AGG | 0.408687 | 8_1:-57216545 | Msa1203200:CDS |
| GTTCGAACCCTTTAGAAACT+TGG | 0.408812 | 8_1:+57217948 | None:intergenic |
| TTAGATTCAGAGATCTATTC+CGG | 0.411303 | 8_1:-57214647 | Msa1203200:CDS |
| GTGAGCTGTCTGTCTCAATC+TGG | 0.413438 | 8_1:+57214495 | None:intergenic |
| GGTTCGAACCATAAACATTC+AGG | 0.417018 | 8_1:-57217934 | Msa1203200:CDS |
| ATAGTCAACCACATAGTATA+TGG | 0.417085 | 8_1:+57218616 | None:intergenic |
| CTGGCTTACCAAGTTTCTAA+AGG | 0.419265 | 8_1:-57217956 | Msa1203200:CDS |
| GTTACAGAGGAAGATCATAA+AGG | 0.421978 | 8_1:-57217675 | Msa1203200:CDS |
| TCGCATAATTACCTGTATAC+AGG | 0.426453 | 8_1:+57217119 | None:intergenic |
| TTGCATCAGTAACTGCTATA+AGG | 0.428044 | 8_1:+57214115 | None:intergenic |
| TGCTTCTTCACTTCCAGAGC+CGG | 0.429978 | 8_1:+57214628 | None:intergenic |
| AAATATATTGGTTGATGTAA+AGG | 0.430499 | 8_1:+57214341 | None:intergenic |
| CAGATCCCTCAAAATTCAGC+TGG | 0.436992 | 8_1:-57215987 | Msa1203200:CDS |
| GCTGGCTGCAATGCCGAGAT+TGG | 0.442433 | 8_1:-57216845 | Msa1203200:CDS |
| TTCTGACAAGCAAAGTCCTC+TGG | 0.446916 | 8_1:+57215383 | None:intergenic |
| TGGCTTACCAAGTTTCTAAA+GGG | 0.451933 | 8_1:-57217955 | Msa1203200:CDS |
| TCAGAGATCTATTCCGGCTC+TGG | 0.452599 | 8_1:-57214641 | Msa1203200:CDS |
| ATGGAAAACTTCCGGTCATT+CGG | 0.453036 | 8_1:+57214396 | None:intergenic |
| TTACAGAGGAAGATCATAAA+GGG | 0.469977 | 8_1:-57217674 | Msa1203200:CDS |
| GAAAATAAGATTGTATGGGC+TGG | 0.473993 | 8_1:-57217975 | Msa1203200:exon |
| TTATAGCATGATTTATGGTA+AGG | 0.476486 | 8_1:+57216547 | None:intergenic |
| TTCCTCTACATCTTCAAAGA+AGG | 0.477132 | 8_1:-57214564 | Msa1203200:CDS |
| CGAACCTCGTAATCAGTGAT+TGG | 0.478079 | 8_1:+57216749 | None:intergenic |
| CATCTTCAAAGAAGGGTAAA+CGG | 0.478692 | 8_1:-57214556 | Msa1203200:CDS |
| AAGGCCATACAAAACAAGTA+TGG | 0.479856 | 8_1:+57215156 | None:intergenic |
| AGGAAGATGAACAACTTGCC+AGG | 0.481242 | 8_1:-57217226 | Msa1203200:CDS |
| CACATGAAATGATGCATGCT+TGG | 0.482818 | 8_1:-57214834 | Msa1203200:CDS |
| TGATTGGAAGTTTGCAAGCA+TGG | 0.482821 | 8_1:+57216765 | None:intergenic |
| CAAACTTTCTTGAATTGCCC+TGG | 0.485539 | 8_1:+57217208 | None:intergenic |
| CCATGTTGCTAAAATTCAAC+AGG | 0.488050 | 8_1:-57217282 | Msa1203200:CDS |
| CGGTAGCCTGCTCCTATACT+TGG | 0.493239 | 8_1:+57215235 | None:intergenic |
| TTTATATCACCATTTCATCA+TGG | 0.493401 | 8_1:+57214377 | None:intergenic |
| GTATTTCAAGATAGAGAGGT+TGG | 0.497395 | 8_1:+57215657 | None:intergenic |
| ATTTCATCATGGAAAACTTC+CGG | 0.499366 | 8_1:+57214388 | None:intergenic |
| TGAGTTGCATGGGAGCTGTA+TGG | 0.499390 | 8_1:-57216808 | Msa1203200:CDS |
| GTGTCTTGAGTGTCTCGATT+CGG | 0.509709 | 8_1:-57215702 | Msa1203200:CDS |
| GCCCATACTTGAGCACTGCC+TGG | 0.512523 | 8_1:+57214441 | None:intergenic |
| ATATGGACACGACAGAGATT+CGG | 0.513953 | 8_1:-57217893 | Msa1203200:CDS |
| TTGTTGTAGCTGTCAGAGAA+TGG | 0.516123 | 8_1:-57215889 | Msa1203200:CDS |
| TGGATTTAGAGAGGGTAACC+AGG | 0.516593 | 8_1:-57214459 | Msa1203200:CDS |
| GAAAAGTCGAAGGAAGTACT+TGG | 0.517865 | 8_1:+57218728 | None:intergenic |
| ACCTGTATACAGGCGAAAAG+AGG | 0.519203 | 8_1:+57217129 | None:intergenic |
| ACAGACAGCTCACCAGCCTA+TGG | 0.521770 | 8_1:-57214485 | Msa1203200:CDS |
| AAACCTTCCATGGCCAATCT+CGG | 0.530954 | 8_1:+57216832 | None:intergenic |
| AGGAGACCAAGTATAGGAGC+AGG | 0.531668 | 8_1:-57215241 | Msa1203200:CDS |
| AGCTCACCAGCCTATGGAGA+TGG | 0.534287 | 8_1:-57214479 | Msa1203200:CDS |
| CTAAATCCATCTCCATAGGC+TGG | 0.535720 | 8_1:+57214473 | None:intergenic |
| TCTTGCAAACATCACACCTT+GGG | 0.542837 | 8_1:+57216512 | None:intergenic |
| TGCTCAAGTATGGGCTTAGA+CGG | 0.544906 | 8_1:-57214433 | Msa1203200:CDS |
| CTGAGGCCTGAAGTTGAAGA+AGG | 0.548038 | 8_1:-57214698 | Msa1203200:CDS |
| GTACCATCGCGCTCGTGCGA+TGG | 0.551335 | 8_1:+57215918 | None:intergenic |
| AGAAGGAATATGCCAAGTCT+TGG | 0.551472 | 8_1:-57214681 | Msa1203200:CDS |
| ACCACATATGAGCCAAGACT+TGG | 0.555232 | 8_1:+57214669 | None:intergenic |
| ATGCCGAGATTGGCCATGGA+AGG | 0.556967 | 8_1:-57216835 | Msa1203200:CDS |
| ACCAGGCAGTGCTCAAGTAT+GGG | 0.557753 | 8_1:-57214442 | Msa1203200:CDS |
| ACCCTTCTTTGAAGATGTAG+AGG | 0.559513 | 8_1:+57214562 | None:intergenic |
| TGTAAAGAGTGAAAAGTCGA+AGG | 0.562493 | 8_1:+57218718 | None:intergenic |
| TCCTCTACATCTTCAAAGAA+GGG | 0.564606 | 8_1:-57214563 | Msa1203200:CDS |
| GCCAAGTCTTGGCTCATATG+TGG | 0.565359 | 8_1:-57214670 | Msa1203200:CDS |
| TGTGATACATATGGAGCATG+AGG | 0.568043 | 8_1:+57214143 | None:intergenic |
| CTTGACCATATCCGAATGAC+CGG | 0.569122 | 8_1:-57214407 | Msa1203200:CDS |
| TGTGCTTGCAGAATCTGTGC+TGG | 0.570167 | 8_1:-57216863 | Msa1203200:intron |
| CTCTCTAAATCCATCTCCAT+AGG | 0.573587 | 8_1:+57214469 | None:intergenic |
| GGTGATGTTGAACAAAATGA+AGG | 0.574994 | 8_1:-57217308 | Msa1203200:CDS |
| TGTCTTTCCACCAAAAGCAT+AGG | 0.577574 | 8_1:+57215590 | None:intergenic |
| ATCTTGCAAACATCACACCT+TGG | 0.577586 | 8_1:+57216511 | None:intergenic |
| AGTTGCTGCAATTGTTTAGG+GGG | 0.578401 | 8_1:-57214215 | Msa1203200:three_prime_UTR |
| TTCTTTGAAGATGTAGAGGA+AGG | 0.578442 | 8_1:+57214566 | None:intergenic |
| TCTTTCAGAGGTTACAGAGG+AGG | 0.581657 | 8_1:-57217697 | Msa1203200:CDS |
| AAGTATCTGTTGCTTGATGA+CGG | 0.585206 | 8_1:-57215734 | Msa1203200:CDS |
| TCTTGTATTTCAAGATAGAG+AGG | 0.585747 | 8_1:+57215653 | None:intergenic |
| ATTCAAGAAAGTTTGAGCGT+TGG | 0.587908 | 8_1:-57217200 | Msa1203200:CDS |
| TGCAATGCCGAGATTGGCCA+TGG | 0.592397 | 8_1:-57216839 | Msa1203200:CDS |
| GAATCAGTTCGAGATGGAGG+AGG | 0.593085 | 8_1:+57217173 | None:intergenic |
| AATTGCGATCTCTCTTTCAG+AGG | 0.593587 | 8_1:-57217709 | Msa1203200:CDS |
| TACAGAAAATAAGATTGTAT+GGG | 0.593719 | 8_1:-57217979 | Msa1203200:exon |
| TCTCGATGAAGTTCAACTTG+AGG | 0.593888 | 8_1:-57217246 | Msa1203200:CDS |
| CATGCATCATTTCATGTGCT+AGG | 0.596530 | 8_1:+57214839 | None:intergenic |
| AATATAGAATCAGTTCGAGA+TGG | 0.599550 | 8_1:+57217167 | None:intergenic |
| CTCTCTTTCAGAGGTTACAG+AGG | 0.604714 | 8_1:-57217700 | Msa1203200:CDS |
| ATAGAATCAGTTCGAGATGG+AGG | 0.607782 | 8_1:+57217170 | None:intergenic |
| AGATTCTGAATCTGAAGATG+AGG | 0.610392 | 8_1:-57217369 | Msa1203200:CDS |
| TCATCTTCCTCGTCATCAAG+TGG | 0.612402 | 8_1:+57217338 | None:intergenic |
| ATAAGGAGCTGCATCACCCA+AGG | 0.612966 | 8_1:-57216528 | Msa1203200:CDS |
| CTATGGAGATGGATTTAGAG+AGG | 0.615579 | 8_1:-57214468 | Msa1203200:CDS |
| GTAAGGACGATTTCCAGACA+TGG | 0.619835 | 8_1:+57216564 | None:intergenic |
| ACAAGCACTGAATGAAGCCA+TGG | 0.620234 | 8_1:-57215570 | Msa1203200:CDS |
| CGACAGGCTATGGCAATCTG+AGG | 0.620280 | 8_1:-57214715 | Msa1203200:intron |
| GGAAGATGAACAACTTGCCA+GGG | 0.625754 | 8_1:-57217225 | Msa1203200:CDS |
| GCACTGAATGAAGCCATGGA+GGG | 0.628049 | 8_1:-57215566 | Msa1203200:CDS |
| AACCATAAACATTCAGGACG+AGG | 0.628809 | 8_1:-57217928 | Msa1203200:CDS |
| ATTCAGGACGAGGATATACT+GGG | 0.630545 | 8_1:-57217918 | Msa1203200:CDS |
| AAGTTGCTGCAATTGTTTAG+GGG | 0.637012 | 8_1:-57214216 | Msa1203200:three_prime_UTR |
| TATGGAGATGGATTTAGAGA+GGG | 0.638780 | 8_1:-57214467 | Msa1203200:CDS |
| GGTTACAGAGGAGGTTACAG+AGG | 0.639025 | 8_1:-57217688 | Msa1203200:CDS |
| GTGATGTTGAACAAAATGAA+GGG | 0.641221 | 8_1:-57217307 | Msa1203200:CDS |
| AGTTCTAACCATATACTATG+TGG | 0.644274 | 8_1:-57218624 | Msa1203200:five_prime_UTR |
| TATCGGAAGGATACCTAGGA+AGG | 0.646461 | 8_1:+57215137 | None:intergenic |
| GATGTGCTCTATACTCAATG+AGG | 0.649586 | 8_1:+57215964 | None:intergenic |
| CAGTTATCATATCTATGACA+CGG | 0.652727 | 8_1:+57215215 | None:intergenic |
| AGCACTGAATGAAGCCATGG+AGG | 0.655277 | 8_1:-57215567 | Msa1203200:CDS |
| TGTCCATCGCACGAGCGCGA+TGG | 0.655772 | 8_1:-57215921 | Msa1203200:CDS |
| ACTTCCAATCACTGATTACG+AGG | 0.658587 | 8_1:-57216753 | Msa1203200:intron |
| GTTGTGTCCACTTGATGACG+AGG | 0.696227 | 8_1:-57217345 | Msa1203200:CDS |
| TTGTAGCTGTCAGAGAATGG+AGG | 0.698487 | 8_1:-57215886 | Msa1203200:intron |
| GACGAGGAAGATGAGCATGT+TGG | 0.698722 | 8_1:-57217329 | Msa1203200:CDS |
| CACCATTTACCTGAAACCAG+AGG | 0.704277 | 8_1:-57215399 | Msa1203200:CDS |
| CTCTGACAGCTACAACAACG+AGG | 0.711035 | 8_1:+57215894 | None:intergenic |
| TGATGTTGAACAAAATGAAG+GGG | 0.716331 | 8_1:-57217306 | Msa1203200:CDS |
| GGATAATCATGATAATACCG+CGG | 0.766773 | 8_1:-57217872 | Msa1203200:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATCAAATATTTATAAAA+TGG | + | chr8_1:57215292-57215311 | None:intergenic | 10.0% |
| !! | TATAAATATTTGATTAGAAA+AGG | - | chr8_1:57215295-57215314 | Msa1203200:intron | 10.0% |
| !! | TGTTAATATATTATATAAAG+GGG | + | chr8_1:57216732-57216751 | None:intergenic | 10.0% |
| !! | GATGTTAATATATTATATAA+AGG | + | chr8_1:57216734-57216753 | None:intergenic | 10.0% |
| !! | ATCTAAATGTATAATTCAAA+AGG | + | chr8_1:57214658-57214677 | None:intergenic | 15.0% |
| !! | TGAATTATACATTTAGATTA+AGG | - | chr8_1:57214660-57214679 | Msa1203200:CDS | 15.0% |
| !!! | TTCTCTTTCATTTAATTTTT+TGG | - | chr8_1:57214684-57214703 | Msa1203200:CDS | 15.0% |
| !!! | TTTCTTAGATTTTGATAATT+AGG | - | chr8_1:57216555-57216574 | Msa1203200:CDS | 15.0% |
| !!! | TTCAAGGATTTTATATTTAT+AGG | - | chr8_1:57217879-57217898 | Msa1203200:CDS | 15.0% |
| !!! | TTATACAATTTTGGAATATT+TGG | + | chr8_1:57218471-57218490 | None:intergenic | 15.0% |
| !! | TGTAATCTATATTTGAATAT+TGG | - | chr8_1:57218582-57218601 | Msa1203200:five_prime_UTR | 15.0% |
| !! | TTTGTTAGAAAAATAACAGA+AGG | + | chr8_1:57214288-57214307 | None:intergenic | 20.0% |
| !!! | TTCTAACAAATTTTCAATCA+TGG | - | chr8_1:57214298-57214317 | Msa1203200:three_prime_UTR | 20.0% |
| !!! | TCTAACAAATTTTCAATCAT+GGG | - | chr8_1:57214299-57214318 | Msa1203200:three_prime_UTR | 20.0% |
| !!! | TTTTCTTTATCCTTTTTTCT+AGG | - | chr8_1:57214387-57214406 | Msa1203200:exon | 20.0% |
| !! | ATTAATTATCCAGCTATATT+TGG | - | chr8_1:57214453-57214472 | Msa1203200:CDS | 20.0% |
| !! | TACAGAAAATAAGATTGTAT+GGG | - | chr8_1:57214779-57214798 | Msa1203200:intron | 20.0% |
| !!! | TTGCTTAGAACATATATTTT+AGG | + | chr8_1:57215213-57215232 | None:intergenic | 20.0% |
| !!! | TTTCTACGATTTTACATATT+AGG | + | chr8_1:57215761-57215780 | None:intergenic | 20.0% |
| !! | TATTGACAACAAAAAAATCA+AGG | + | chr8_1:57216135-57216154 | None:intergenic | 20.0% |
| !!! | TTTTCACAATTACTTTTAGA+AGG | - | chr8_1:57216425-57216444 | Msa1203200:intron | 20.0% |
| !!! | GAAATACAAGAATTTTATGA+AGG | - | chr8_1:57217117-57217136 | Msa1203200:intron | 20.0% |
| !!! | ATTTTTCAATGTTGATTGTA+GGG | - | chr8_1:57217329-57217348 | Msa1203200:CDS | 20.0% |
| !!! | TTTTGTAATTCCAGATTTTA+AGG | - | chr8_1:57217497-57217516 | Msa1203200:intron | 20.0% |
| !! | AAGAAAAAAAAAGATGGTAT+CGG | + | chr8_1:57217641-57217660 | None:intergenic | 20.0% |
| !! | AAGATGAAGAAAAAAAAAGA+TGG | + | chr8_1:57217647-57217666 | None:intergenic | 20.0% |
| !! | TATATTTATAGGTTACTAAC+AGG | - | chr8_1:57217890-57217909 | Msa1203200:CDS | 20.0% |
| !! | TTTATATTCCATTACTAAGT+TGG | - | chr8_1:57217999-57218018 | Msa1203200:five_prime_UTR | 20.0% |
| !!! | AAATATATTGGTTGATGTAA+AGG | + | chr8_1:57218420-57218439 | None:intergenic | 20.0% |
| ! | AACATTACCAGAAAAAGATT+AGG | + | chr8_1:57214229-57214248 | None:intergenic | 25.0% |
| !! | GTGTTTTCAATCAATATTGA+TGG | - | chr8_1:57214342-57214361 | Msa1203200:three_prime_UTR | 25.0% |
| !! | TTTTCAATCAATATTGATGG+TGG | - | chr8_1:57214345-57214364 | Msa1203200:three_prime_UTR | 25.0% |
| !! | TTTCAATCAATATTGATGGT+GGG | - | chr8_1:57214346-57214365 | Msa1203200:three_prime_UTR | 25.0% |
| ! | TGTTTGATTGAATTTGGATT+TGG | - | chr8_1:57214579-57214598 | Msa1203200:CDS | 25.0% |
| ! | ATTGAATTTGGATTTGGATT+TGG | - | chr8_1:57214585-57214604 | Msa1203200:CDS | 25.0% |
| ! | TTTCAGTTTATGTGAATTGT+AGG | - | chr8_1:57214729-57214748 | Msa1203200:intron | 25.0% |
| !!! | CATACAATCTTATTTTCTGT+AGG | + | chr8_1:57214780-57214799 | None:intergenic | 25.0% |
| ! | CTACAGAAAATAAGATTGTA+TGG | - | chr8_1:57214778-57214797 | Msa1203200:intron | 25.0% |
| ! | CATAAAGGGAAAAAAGTTAT+CGG | - | chr8_1:57215098-57215117 | Msa1203200:intron | 25.0% |
| ! | TTTGTGTAACATTGTTTGAA+TGG | - | chr8_1:57215161-57215180 | Msa1203200:CDS | 25.0% |
| !!! | GAACATATATTTTAGGTATC+CGG | + | chr8_1:57215206-57215225 | None:intergenic | 25.0% |
| ! | GAATTTCACTATTTGTTCAA+TGG | + | chr8_1:57215270-57215289 | None:intergenic | 25.0% |
| ! | TCTTTAGCAAATTCGATATA+TGG | + | chr8_1:57215704-57215723 | None:intergenic | 25.0% |
| !!! | CTAAAAAGTTTGCTTTTCAT+AGG | - | chr8_1:57215820-57215839 | Msa1203200:intron | 25.0% |
| !! | ATAAAAGCATAGACTAAAAC+CGG | - | chr8_1:57215861-57215880 | Msa1203200:intron | 25.0% |
| ! | TTATAGCATGATTTATGGTA+AGG | + | chr8_1:57216214-57216233 | None:intergenic | 25.0% |
| ! | TTACCATAAATCATGCTATA+AGG | - | chr8_1:57216213-57216232 | Msa1203200:intron | 25.0% |
| !!! | TAATGTTTTGTTCTTTTCAC+AGG | - | chr8_1:57216484-57216503 | Msa1203200:intron | 25.0% |
| ! | AAATATAATACGCCTATATC+CGG | + | chr8_1:57216538-57216557 | None:intergenic | 25.0% |
| !! | TGCATAGTATTGAAAAATCA+CGG | + | chr8_1:57216640-57216659 | None:intergenic | 25.0% |
| !! | TCATCTCACAATATTTTATC+AGG | - | chr8_1:57216904-57216923 | Msa1203200:intron | 25.0% |
| ! | ATCAACATTGAAAAATCCAA+AGG | + | chr8_1:57217325-57217344 | None:intergenic | 25.0% |
| !!! | GATTTTTCAATGTTGATTGT+AGG | - | chr8_1:57217328-57217347 | Msa1203200:CDS | 25.0% |
| ! | AACATGATTGCAATAATCAT+TGG | + | chr8_1:57217734-57217753 | None:intergenic | 25.0% |
| !!! | TTCAACATTGTTTTGATCAT+TGG | + | chr8_1:57217977-57217996 | None:intergenic | 25.0% |
| ! | TTTATATCACCATTTCATCA+TGG | + | chr8_1:57218384-57218403 | None:intergenic | 25.0% |
| ! | ATGACAAAGCTCAAATATAT+TGG | + | chr8_1:57218432-57218451 | None:intergenic | 25.0% |
| !! | CTGGTGTAATTATACAATTT+TGG | + | chr8_1:57218480-57218499 | None:intergenic | 25.0% |
| ! | ATATTTGAATATTGGCAGTT+TGG | - | chr8_1:57218590-57218609 | Msa1203200:five_prime_UTR | 25.0% |
| !!! | AAGGTATTTTGTGATACATA+TGG | + | chr8_1:57218627-57218646 | None:intergenic | 25.0% |
| CACTCATAAAAAGCTAATTC+TGG | - | chr8_1:57214061-57214080 | Msa1203200:three_prime_UTR | 30.0% | |
| ! | AGTTCTAACCATATACTATG+TGG | - | chr8_1:57214134-57214153 | Msa1203200:three_prime_UTR | 30.0% |
| ATAGTCAACCACATAGTATA+TGG | + | chr8_1:57214145-57214164 | None:intergenic | 30.0% | |
| ! | TCTGATTCCTAATCTTTTTC+TGG | - | chr8_1:57214219-57214238 | Msa1203200:three_prime_UTR | 30.0% |
| ! | AAGAAACTTTTTGTGTCACA+AGG | + | chr8_1:57214253-57214272 | None:intergenic | 30.0% |
| !! | TTCAATCAATATTGATGGTG+GGG | - | chr8_1:57214347-57214366 | Msa1203200:three_prime_UTR | 30.0% |
| CAAGTGTGTTTGATTGAATT+TGG | - | chr8_1:57214573-57214592 | Msa1203200:CDS | 30.0% | |
| !!! | CAATCTTATTTTCTGTAGGT+CGG | + | chr8_1:57214776-57214795 | None:intergenic | 30.0% |
| TTACAGAGGAAGATCATAAA+GGG | - | chr8_1:57215084-57215103 | Msa1203200:intron | 30.0% | |
| ! | AGATTTATGCTTTTGCAAGA+CGG | - | chr8_1:57215123-57215142 | Msa1203200:intron | 30.0% |
| ! | AATTAGTGTTTTCTGTGTAC+CGG | - | chr8_1:57215184-57215203 | Msa1203200:CDS | 30.0% |
| !!! | AGAAAAGGTTACCTCTTTTT+TGG | - | chr8_1:57215310-57215329 | Msa1203200:intron | 30.0% |
| !!! | GAAAAGGTTACCTCTTTTTT+GGG | - | chr8_1:57215311-57215330 | Msa1203200:intron | 30.0% |
| GTGATGTTGAACAAAATGAA+GGG | - | chr8_1:57215451-57215470 | Msa1203200:intron | 30.0% | |
| TGATGTTGAACAAAATGAAG+GGG | - | chr8_1:57215452-57215471 | Msa1203200:intron | 30.0% | |
| AATATAGAATCAGTTCGAGA+TGG | + | chr8_1:57215594-57215613 | None:intergenic | 30.0% | |
| TCGATATATGGTATTTAGAC+TGG | + | chr8_1:57215692-57215711 | None:intergenic | 30.0% | |
| AGATCACTGCATATGATAAA+AGG | - | chr8_1:57215721-57215740 | Msa1203200:CDS | 30.0% | |
| GATCACTGCATATGATAAAA+GGG | - | chr8_1:57215722-57215741 | Msa1203200:CDS | 30.0% | |
| ATCACTGCATATGATAAAAG+GGG | - | chr8_1:57215723-57215742 | Msa1203200:CDS | 30.0% | |
| TGATAAAAGGGGAAAATGAT+TGG | - | chr8_1:57215734-57215753 | Msa1203200:CDS | 30.0% | |
| GATAAAAGGGGAAAATGATT+GGG | - | chr8_1:57215735-57215754 | Msa1203200:CDS | 30.0% | |
| TGGAATACTGTCATGAATAA+AGG | + | chr8_1:57216177-57216196 | None:intergenic | 30.0% | |
| TGAAAACAGATCAAAGTCAA+TGG | + | chr8_1:57216411-57216430 | None:intergenic | 30.0% | |
| ! | TTATGATTTGCCAGAAATTG+TGG | - | chr8_1:57216578-57216597 | Msa1203200:intron | 30.0% |
| TCTAGAAATAACCAGTTCTT+AGG | - | chr8_1:57216691-57216710 | Msa1203200:intron | 30.0% | |
| TCTTGTATTTCAAGATAGAG+AGG | + | chr8_1:57217108-57217127 | None:intergenic | 30.0% | |
| ATCCAGAGAAGAGAAATAAA+AGG | + | chr8_1:57217267-57217286 | None:intergenic | 30.0% | |
| AAGTAAAACATCCTTACAGT+GGG | + | chr8_1:57217413-57217432 | None:intergenic | 30.0% | |
| !! | ATTTTAAGGAGACCAAGTAT+AGG | - | chr8_1:57217511-57217530 | Msa1203200:intron | 30.0% |
| CAGTTATCATATCTATGACA+CGG | + | chr8_1:57217546-57217565 | None:intergenic | 30.0% | |
| ! | ATATGATAACTGAGCCTTTT+AGG | - | chr8_1:57217554-57217573 | Msa1203200:intron | 30.0% |
| ! | AAAAAAAAGATGGTATCGGA+AGG | + | chr8_1:57217637-57217656 | None:intergenic | 30.0% |
| TAGTTATCGAGCTAAAGTTA+AGG | + | chr8_1:57217786-57217805 | None:intergenic | 30.0% | |
| AGATGGTAATTCAAGTGATT+TGG | + | chr8_1:57217815-57217834 | None:intergenic | 30.0% | |
| CTGTTGAGCATAAAAATAGA+TGG | + | chr8_1:57217832-57217851 | None:intergenic | 30.0% | |
| GAAATCTGGTACATAATTCA+AGG | - | chr8_1:57217863-57217882 | Msa1203200:intron | 30.0% | |
| TTAGATTCAGAGATCTATTC+CGG | - | chr8_1:57218111-57218130 | Msa1203200:intron | 30.0% | |
| ATTTCATCATGGAAAACTTC+CGG | + | chr8_1:57218373-57218392 | None:intergenic | 30.0% | |
| TAAAGTTGCTGCAATTGTTT+AGG | - | chr8_1:57218540-57218559 | Msa1203200:five_prime_UTR | 30.0% | |
| AAAGTTGCTGCAATTGTTTA+GGG | - | chr8_1:57218541-57218560 | Msa1203200:five_prime_UTR | 30.0% | |
| ATCACTGTCCAAGTAAAAAT+TGG | - | chr8_1:57218728-57218747 | Msa1203200:five_prime_UTR | 30.0% | |
| TGTAAAGAGTGAAAAGTCGA+AGG | + | chr8_1:57214043-57214062 | None:intergenic | 35.0% | |
| ATTGCACATGCCTAGAAAAA+AGG | + | chr8_1:57214400-57214419 | None:intergenic | 35.0% | |
| AAGCAACAACCAAATATAGC+TGG | + | chr8_1:57214465-57214484 | None:intergenic | 35.0% | |
| !! | TTGGTTGTTGCTTTGCATAA+TGG | - | chr8_1:57214472-57214491 | Msa1203200:CDS | 35.0% |
| ! | TGGATTTGGATTTGGAATTC+AGG | - | chr8_1:57214593-57214612 | Msa1203200:CDS | 35.0% |
| GAAAATAAGATTGTATGGGC+TGG | - | chr8_1:57214783-57214802 | Msa1203200:intron | 35.0% | |
| TGGCTTACCAAGTTTCTAAA+GGG | - | chr8_1:57214803-57214822 | Msa1203200:intron | 35.0% | |
| GGATAATCATGATAATACCG+CGG | - | chr8_1:57214886-57214905 | Msa1203200:intron | 35.0% | |
| AGCATAAACTGTTATTACCG+CGG | + | chr8_1:57214906-57214925 | None:intergenic | 35.0% | |
| GTTACAGAGGAAGATCATAA+AGG | - | chr8_1:57215083-57215102 | Msa1203200:intron | 35.0% | |
| ! | GACGTTTTTAAACACTTCAC+CGG | + | chr8_1:57215337-57215356 | None:intergenic | 35.0% |
| GATTCAGAATCTTCTTCTGA+AGG | + | chr8_1:57215381-57215400 | None:intergenic | 35.0% | |
| AGATTCTGAATCTGAAGATG+AGG | - | chr8_1:57215389-57215408 | Msa1203200:CDS | 35.0% | |
| GGTGATGTTGAACAAAATGA+AGG | - | chr8_1:57215450-57215469 | Msa1203200:intron | 35.0% | |
| !! | CCTGTTGAATTTTAGCAACA+TGG | + | chr8_1:57215479-57215498 | None:intergenic | 35.0% |
| CCATGTTGCTAAAATTCAAC+AGG | - | chr8_1:57215476-57215495 | Msa1203200:intron | 35.0% | |
| ATTCAAGAAAGTTTGAGCGT+TGG | - | chr8_1:57215558-57215577 | Msa1203200:CDS | 35.0% | |
| TCGCATAATTACCTGTATAC+AGG | + | chr8_1:57215642-57215661 | None:intergenic | 35.0% | |
| CTAAATTGTTGTCACCATAG+AGG | + | chr8_1:57215798-57215817 | None:intergenic | 35.0% | |
| ! | CAAGCACATTTTGCATTAAC+CGG | + | chr8_1:57215883-57215902 | None:intergenic | 35.0% |
| GCTCCTTATAGCATGATTTA+TGG | + | chr8_1:57216219-57216238 | None:intergenic | 35.0% | |
| ATTTCACTACATTATGTGCG+AGG | - | chr8_1:57216381-57216400 | Msa1203200:intron | 35.0% | |
| ACTTAAATCCCTTCAAGAAC+CGG | - | chr8_1:57216516-57216535 | Msa1203200:CDS | 35.0% | |
| !! | CAGTATTTTTGTAGCCAGAA+AGG | + | chr8_1:57216819-57216838 | None:intergenic | 35.0% |
| !! | GTGTTTTCTTCTTGGTAACA+AGG | + | chr8_1:57216930-57216949 | None:intergenic | 35.0% |
| !!! | GATAGAGAGTGTTTTCTTCT+TGG | + | chr8_1:57216938-57216957 | None:intergenic | 35.0% |
| ! | AAGTATCTGTTGCTTGATGA+CGG | - | chr8_1:57217024-57217043 | Msa1203200:intron | 35.0% |
| GTATTTCAAGATAGAGAGGT+TGG | + | chr8_1:57217104-57217123 | None:intergenic | 35.0% | |
| !! | TGCCTTTTATTTCTCTTCTC+TGG | - | chr8_1:57217262-57217281 | Msa1203200:CDS | 35.0% |
| AAAATCCAAAATCAGGACAG+TGG | + | chr8_1:57217302-57217321 | None:intergenic | 35.0% | |
| CCAAAGGAAAATCCAAAATC+AGG | + | chr8_1:57217309-57217328 | None:intergenic | 35.0% | |
| ! | CCTGATTTTGGATTTTCCTT+TGG | - | chr8_1:57217306-57217325 | Msa1203200:CDS | 35.0% |
| AGTAAAACATCCTTACAGTG+GGG | + | chr8_1:57217412-57217431 | None:intergenic | 35.0% | |
| CAAGTAAAACATCCTTACAG+TGG | + | chr8_1:57217414-57217433 | None:intergenic | 35.0% | |
| TACTTGGTCTCCTTAAAATC+TGG | + | chr8_1:57217510-57217529 | None:intergenic | 35.0% | |
| !!! | ACAGCCATACTTGTTTTGTA+TGG | - | chr8_1:57217598-57217617 | Msa1203200:intron | 35.0% |
| AAGGCCATACAAAACAAGTA+TGG | + | chr8_1:57217605-57217624 | None:intergenic | 35.0% | |
| GGAGAATGATCCTTGTAATT+TGG | - | chr8_1:57217681-57217700 | Msa1203200:CDS | 35.0% | |
| ! | GATCCTTGTAATTTGGAGTT+TGG | - | chr8_1:57217688-57217707 | Msa1203200:CDS | 35.0% |
| ! | CTTGTAATTTGGAGTTTGGT+CGG | - | chr8_1:57217692-57217711 | Msa1203200:CDS | 35.0% |
| ! | CAGTACTTGCATTTGAAATC+TGG | - | chr8_1:57217849-57217868 | Msa1203200:intron | 35.0% |
| GAGATTGTCCAACTTAGTAA+TGG | + | chr8_1:57218010-57218029 | None:intergenic | 35.0% | |
| !! | CTCTTCTGTTTATTTTCGAC+AGG | - | chr8_1:57218027-57218046 | Msa1203200:intron | 35.0% |
| !! | TGTTTATTTTCGACAGGCTA+TGG | - | chr8_1:57218033-57218052 | Msa1203200:intron | 35.0% |
| CATATTCCTTCTTCAACTTC+AGG | + | chr8_1:57218069-57218088 | None:intergenic | 35.0% | |
| ! | TTCTTTGAAGATGTAGAGGA+AGG | + | chr8_1:57218195-57218214 | None:intergenic | 35.0% |
| TTCCTCTACATCTTCAAAGA+AGG | - | chr8_1:57218194-57218213 | Msa1203200:intron | 35.0% | |
| TCCTCTACATCTTCAAAGAA+GGG | - | chr8_1:57218195-57218214 | Msa1203200:intron | 35.0% | |
| CATCTTCAAAGAAGGGTAAA+CGG | - | chr8_1:57218202-57218221 | Msa1203200:intron | 35.0% | |
| ACCAAGTTCCTTCTCAAAAT+CGG | + | chr8_1:57218229-57218248 | None:intergenic | 35.0% | |
| ! | TATGGAGATGGATTTAGAGA+GGG | - | chr8_1:57218291-57218310 | Msa1203200:intron | 35.0% |
| ! | GGAAGTTTTCCATGATGAAA+TGG | - | chr8_1:57218372-57218391 | Msa1203200:intron | 35.0% |
| ACCAGACTCTACACAAAATA+AGG | - | chr8_1:57218495-57218514 | Msa1203200:intron | 35.0% | |
| !!! | TCCTTATTTTGTGTAGAGTC+TGG | + | chr8_1:57218499-57218518 | None:intergenic | 35.0% |
| AAGTTGCTGCAATTGTTTAG+GGG | - | chr8_1:57218542-57218561 | Msa1203200:five_prime_UTR | 35.0% | |
| TTGCATCAGTAACTGCTATA+AGG | + | chr8_1:57218646-57218665 | None:intergenic | 35.0% | |
| !! | GAAAAGTCGAAGGAAGTACT+TGG | + | chr8_1:57214033-57214052 | None:intergenic | 40.0% |
| !! | ATCAATATTGATGGTGGGGT+TGG | - | chr8_1:57214351-57214370 | Msa1203200:three_prime_UTR | 40.0% |
| !!! | TGTAGGTGAATTTTGAGACG+AGG | - | chr8_1:57214746-57214765 | Msa1203200:intron | 40.0% |
| CTGGCTTACCAAGTTTCTAA+AGG | - | chr8_1:57214802-57214821 | Msa1203200:intron | 40.0% | |
| ! | GTTCGAACCCTTTAGAAACT+TGG | + | chr8_1:57214813-57214832 | None:intergenic | 40.0% |
| GGTTCGAACCATAAACATTC+AGG | - | chr8_1:57214824-57214843 | Msa1203200:CDS | 40.0% | |
| AACCATAAACATTCAGGACG+AGG | - | chr8_1:57214830-57214849 | Msa1203200:CDS | 40.0% | |
| ATCCTCGTCCTGAATGTTTA+TGG | + | chr8_1:57214835-57214854 | None:intergenic | 40.0% | |
| ATTCAGGACGAGGATATACT+GGG | - | chr8_1:57214840-57214859 | Msa1203200:CDS | 40.0% | |
| CGAGGATATACTGGGAAATA+TGG | - | chr8_1:57214848-57214867 | Msa1203200:CDS | 40.0% | |
| ATATGGACACGACAGAGATT+CGG | - | chr8_1:57214865-57214884 | Msa1203200:intron | 40.0% | |
| AGAGACTGAAGTTGCAATAG+TGG | - | chr8_1:57214969-57214988 | Msa1203200:intron | 40.0% | |
| TAGTGGCAAATTCTGAGTGT+AGG | - | chr8_1:57214986-57215005 | Msa1203200:intron | 40.0% | |
| AATTGCGATCTCTCTTTCAG+AGG | - | chr8_1:57215049-57215068 | Msa1203200:intron | 40.0% | |
| ! | TTTATGCTTTTGCAAGACGG+TGG | - | chr8_1:57215126-57215145 | Msa1203200:intron | 40.0% |
| TCTCGATGAAGTTCAACTTG+AGG | - | chr8_1:57215512-57215531 | Msa1203200:intron | 40.0% | |
| CAAACTTTCTTGAATTGCCC+TGG | + | chr8_1:57215553-57215572 | None:intergenic | 40.0% | |
| ATAGAATCAGTTCGAGATGG+AGG | + | chr8_1:57215591-57215610 | None:intergenic | 40.0% | |
| GGCGAAAAGAGGTTTGTAAA+AGG | + | chr8_1:57215621-57215640 | None:intergenic | 40.0% | |
| AACTGAAATAGCCACCTCTA+TGG | - | chr8_1:57215781-57215800 | Msa1203200:intron | 40.0% | |
| AATTGTTGTCACCATAGAGG+TGG | + | chr8_1:57215795-57215814 | None:intergenic | 40.0% | |
| TGCAACTCAAAAACCTTCCA+TGG | + | chr8_1:57215939-57215958 | None:intergenic | 40.0% | |
| !!! | TGGAAGGTTTTTGAGTTGCA+TGG | - | chr8_1:57215939-57215958 | Msa1203200:CDS | 40.0% |
| !!! | GGAAGGTTTTTGAGTTGCAT+GGG | - | chr8_1:57215940-57215959 | Msa1203200:CDS | 40.0% |
| GCATGGCAACAAAAACATTC+TGG | + | chr8_1:57215979-57215998 | None:intergenic | 40.0% | |
| TGATTGGAAGTTTGCAAGCA+TGG | + | chr8_1:57215996-57216015 | None:intergenic | 40.0% | |
| ! | ACTTCCAATCACTGATTACG+AGG | - | chr8_1:57216005-57216024 | Msa1203200:intron | 40.0% |
| TCATGACAGTATTCCATGTC+TGG | - | chr8_1:57216181-57216200 | Msa1203200:intron | 40.0% | |
| TCTTGCAAACATCACACCTT+GGG | + | chr8_1:57216249-57216268 | None:intergenic | 40.0% | |
| ATCTTGCAAACATCACACCT+TGG | + | chr8_1:57216250-57216269 | None:intergenic | 40.0% | |
| ! | TTTGTCACTTCTGTTGTGCT+TGG | - | chr8_1:57216317-57216336 | Msa1203200:intron | 40.0% |
| TGCTGTTGATCCACAATTTC+TGG | + | chr8_1:57216591-57216610 | None:intergenic | 40.0% | |
| TGATGTCATAGCCTAAGAAC+TGG | + | chr8_1:57216705-57216724 | None:intergenic | 40.0% | |
| GATGTGCTCTATACTCAATG+AGG | + | chr8_1:57216797-57216816 | None:intergenic | 40.0% | |
| AGTATAGAGCACATCCTTTC+TGG | - | chr8_1:57216802-57216821 | Msa1203200:CDS | 40.0% | |
| TTGTTGTAGCTGTCAGAGAA+TGG | - | chr8_1:57216869-57216888 | Msa1203200:intron | 40.0% | |
| ! | GCAGCAAATTCCTATGCTTT+TGG | - | chr8_1:57217158-57217177 | Msa1203200:CDS | 40.0% |
| ! | GCAAATTCCTATGCTTTTGG+TGG | - | chr8_1:57217161-57217180 | Msa1203200:CDS | 40.0% |
| ! | TGTCTTTCCACCAAAAGCAT+AGG | + | chr8_1:57217171-57217190 | None:intergenic | 40.0% |
| ! | TCTTTCCACTGTCCTGATTT+TGG | - | chr8_1:57217294-57217313 | Msa1203200:CDS | 40.0% |
| !! | TTGTTTTGTATGGCCTTCCT+AGG | - | chr8_1:57217608-57217627 | Msa1203200:intron | 40.0% |
| TCATCTTAACCCTCTGATTC+AGG | - | chr8_1:57217660-57217679 | Msa1203200:intron | 40.0% | |
| GATCATTCTCCTGAATCAGA+GGG | + | chr8_1:57217672-57217691 | None:intergenic | 40.0% | |
| CGACCAAACTCCAAATTACA+AGG | + | chr8_1:57217694-57217713 | None:intergenic | 40.0% | |
| CATGCATCATTTCATGTGCT+AGG | + | chr8_1:57217922-57217941 | None:intergenic | 40.0% | |
| CACATGAAATGATGCATGCT+TGG | - | chr8_1:57217924-57217943 | Msa1203200:CDS | 40.0% | |
| CATGCTTGGCTTAGACTAAA+AGG | - | chr8_1:57217938-57217957 | Msa1203200:CDS | 40.0% | |
| AGAAGGAATATGCCAAGTCT+TGG | - | chr8_1:57218077-57218096 | Msa1203200:intron | 40.0% | |
| ! | ACCCTTCTTTGAAGATGTAG+AGG | + | chr8_1:57218199-57218218 | None:intergenic | 40.0% |
| !! | TAAACGGTCCGATTTTGAGA+AGG | - | chr8_1:57218218-57218237 | Msa1203200:intron | 40.0% |
| !! | TCCGATTTTGAGAAGGAACT+TGG | - | chr8_1:57218225-57218244 | Msa1203200:intron | 40.0% |
| CTCTCTAAATCCATCTCCAT+AGG | + | chr8_1:57218292-57218311 | None:intergenic | 40.0% | |
| ! | CTATGGAGATGGATTTAGAG+AGG | - | chr8_1:57218290-57218309 | Msa1203200:intron | 40.0% |
| ATGGAAAACTTCCGGTCATT+CGG | + | chr8_1:57218365-57218384 | None:intergenic | 40.0% | |
| AGTTGCTGCAATTGTTTAGG+GGG | - | chr8_1:57218543-57218562 | Msa1203200:five_prime_UTR | 40.0% | |
| TGTGATACATATGGAGCATG+AGG | + | chr8_1:57218618-57218637 | None:intergenic | 40.0% | |
| CATTCAGGACGAGGATATAC+TGG | - | chr8_1:57214839-57214858 | Msa1203200:CDS | 45.0% | |
| CTCTCTTTCAGAGGTTACAG+AGG | - | chr8_1:57215058-57215077 | Msa1203200:intron | 45.0% | |
| TCTTTCAGAGGTTACAGAGG+AGG | - | chr8_1:57215061-57215080 | Msa1203200:intron | 45.0% | |
| !!! | AGGTTACCTCTTTTTTGGGC+CGG | - | chr8_1:57215315-57215334 | Msa1203200:intron | 45.0% |
| TCATCTTCCTCGTCATCAAG+TGG | + | chr8_1:57215423-57215442 | None:intergenic | 45.0% | |
| AGGAAGATGAACAACTTGCC+AGG | - | chr8_1:57215532-57215551 | Msa1203200:intron | 45.0% | |
| GGAAGATGAACAACTTGCCA+GGG | - | chr8_1:57215533-57215552 | Msa1203200:intron | 45.0% | |
| ! | ACCTCTTTTCGCCTGTATAC+AGG | - | chr8_1:57215628-57215647 | Msa1203200:CDS | 45.0% |
| ACCTGTATACAGGCGAAAAG+AGG | + | chr8_1:57215632-57215651 | None:intergenic | 45.0% | |
| AAACCTTCCATGGCCAATCT+CGG | + | chr8_1:57215929-57215948 | None:intergenic | 45.0% | |
| CGAACCTCGTAATCAGTGAT+TGG | + | chr8_1:57216012-57216031 | None:intergenic | 45.0% | |
| GTAAGGACGATTTCCAGACA+TGG | + | chr8_1:57216197-57216216 | None:intergenic | 45.0% | |
| TCCCTTCAAGAACCGGATAT+AGG | - | chr8_1:57216523-57216542 | Msa1203200:CDS | 45.0% | |
| GCCTATATCCGGTTCTTGAA+GGG | + | chr8_1:57216527-57216546 | None:intergenic | 45.0% | |
| CAGATCCCTCAAAATTCAGC+TGG | - | chr8_1:57216771-57216790 | Msa1203200:CDS | 45.0% | |
| ! | TGAGGCCAGCTGAATTTTGA+GGG | + | chr8_1:57216779-57216798 | None:intergenic | 45.0% |
| ! | ATGAGGCCAGCTGAATTTTG+AGG | + | chr8_1:57216780-57216799 | None:intergenic | 45.0% |
| TTGTAGCTGTCAGAGAATGG+AGG | - | chr8_1:57216872-57216891 | Msa1203200:intron | 45.0% | |
| GTGTCTTGAGTGTCTCGATT+CGG | - | chr8_1:57217056-57217075 | Msa1203200:intron | 45.0% | |
| !! | GTGTCTCGATTCGGCTATTA+TGG | - | chr8_1:57217065-57217084 | Msa1203200:intron | 45.0% |
| !! | ACAAGCACTGAATGAAGCCA+TGG | - | chr8_1:57217188-57217207 | Msa1203200:CDS | 45.0% |
| ! | TACATTCTTTTCGCCCTCCA+TGG | + | chr8_1:57217208-57217227 | None:intergenic | 45.0% |
| CACCATTTACCTGAAACCAG+AGG | - | chr8_1:57217359-57217378 | Msa1203200:CDS | 45.0% | |
| ! | GTCCTCTGGTTTCAGGTAAA+TGG | + | chr8_1:57217364-57217383 | None:intergenic | 45.0% |
| ! | AAGCAAAGTCCTCTGGTTTC+AGG | + | chr8_1:57217371-57217390 | None:intergenic | 45.0% |
| TTCTGACAAGCAAAGTCCTC+TGG | + | chr8_1:57217378-57217397 | None:intergenic | 45.0% | |
| CATCGACGTATCAGCCTAAA+AGG | + | chr8_1:57217571-57217590 | None:intergenic | 45.0% | |
| TATCGGAAGGATACCTAGGA+AGG | + | chr8_1:57217624-57217643 | None:intergenic | 45.0% | |
| ! | ATGGTATCGGAAGGATACCT+AGG | + | chr8_1:57217628-57217647 | None:intergenic | 45.0% |
| GGATCATTCTCCTGAATCAG+AGG | + | chr8_1:57217673-57217692 | None:intergenic | 45.0% | |
| TGGTCGGAAAGTAAGTGAAG+TGG | - | chr8_1:57217708-57217727 | Msa1203200:CDS | 45.0% | |
| ACCACATATGAGCCAAGACT+TGG | + | chr8_1:57218092-57218111 | None:intergenic | 45.0% | |
| CTAAATCCATCTCCATAGGC+TGG | + | chr8_1:57218288-57218307 | None:intergenic | 45.0% | |
| TGGATTTAGAGAGGGTAACC+AGG | - | chr8_1:57218299-57218318 | Msa1203200:intron | 45.0% | |
| TGCTCAAGTATGGGCTTAGA+CGG | - | chr8_1:57218325-57218344 | Msa1203200:intron | 45.0% | |
| CTTGACCATATCCGAATGAC+CGG | - | chr8_1:57218351-57218370 | Msa1203200:intron | 45.0% | |
| AACTTCCGGTCATTCGGATA+TGG | + | chr8_1:57218359-57218378 | None:intergenic | 45.0% | |
| !! | ATGTTAATATATTATATAAA+GGG | + | chr8_1:57216733-57216752 | None:intergenic | 5.0% |
| GGTTACAGAGGAGGTTACAG+AGG | - | chr8_1:57215070-57215089 | Msa1203200:intron | 50.0% | |
| ACTTCACCGGCCCAAAAAAG+AGG | + | chr8_1:57215324-57215343 | None:intergenic | 50.0% | |
| !! | GTTGTGTCCACTTGATGACG+AGG | - | chr8_1:57215413-57215432 | Msa1203200:intron | 50.0% |
| GACGAGGAAGATGAGCATGT+TGG | - | chr8_1:57215429-57215448 | Msa1203200:intron | 50.0% | |
| GAATCAGTTCGAGATGGAGG+AGG | + | chr8_1:57215588-57215607 | None:intergenic | 50.0% | |
| TGTGCTTGCAGAATCTGTGC+TGG | - | chr8_1:57215895-57215914 | Msa1203200:CDS | 50.0% | |
| TGAGTTGCATGGGAGCTGTA+TGG | - | chr8_1:57215950-57215969 | Msa1203200:CDS | 50.0% | |
| ATAAGGAGCTGCATCACCCA+AGG | - | chr8_1:57216230-57216249 | Msa1203200:intron | 50.0% | |
| CGCCTATATCCGGTTCTTGA+AGG | + | chr8_1:57216528-57216547 | None:intergenic | 50.0% | |
| CTCTGACAGCTACAACAACG+AGG | + | chr8_1:57216867-57216886 | None:intergenic | 50.0% | |
| ! | AGCACTGAATGAAGCCATGG+AGG | - | chr8_1:57217191-57217210 | Msa1203200:CDS | 50.0% |
| GCACTGAATGAAGCCATGGA+GGG | - | chr8_1:57217192-57217211 | Msa1203200:CDS | 50.0% | |
| AGCAAACTGTCCCCACTGTA+AGG | - | chr8_1:57217399-57217418 | Msa1203200:intron | 50.0% | |
| AGGAGACCAAGTATAGGAGC+AGG | - | chr8_1:57217517-57217536 | Msa1203200:intron | 50.0% | |
| CTGAGGCCTGAAGTTGAAGA+AGG | - | chr8_1:57218060-57218079 | Msa1203200:intron | 50.0% | |
| GCCAAGTCTTGGCTCATATG+TGG | - | chr8_1:57218088-57218107 | Msa1203200:intron | 50.0% | |
| TCAGAGATCTATTCCGGCTC+TGG | - | chr8_1:57218117-57218136 | Msa1203200:intron | 50.0% | |
| TGCTTCTTCACTTCCAGAGC+CGG | + | chr8_1:57218133-57218152 | None:intergenic | 50.0% | |
| GTGAGCTGTCTGTCTCAATC+TGG | + | chr8_1:57218266-57218285 | None:intergenic | 50.0% | |
| AACCAGGCAGTGCTCAAGTA+TGG | - | chr8_1:57218315-57218334 | Msa1203200:intron | 50.0% | |
| ACCAGGCAGTGCTCAAGTAT+GGG | - | chr8_1:57218316-57218335 | Msa1203200:intron | 50.0% | |
| ! | TGCAATGCCGAGATTGGCCA+TGG | - | chr8_1:57215919-57215938 | Msa1203200:CDS | 55.0% |
| ! | ATGCCGAGATTGGCCATGGA+AGG | - | chr8_1:57215923-57215942 | Msa1203200:CDS | 55.0% |
| CGGTAGCCTGCTCCTATACT+TGG | + | chr8_1:57217526-57217545 | None:intergenic | 55.0% | |
| CGACAGGCTATGGCAATCTG+AGG | - | chr8_1:57218043-57218062 | Msa1203200:intron | 55.0% | |
| ACAGACAGCTCACCAGCCTA+TGG | - | chr8_1:57218273-57218292 | Msa1203200:intron | 55.0% | |
| AGCTCACCAGCCTATGGAGA+TGG | - | chr8_1:57218279-57218298 | Msa1203200:intron | 55.0% | |
| GCTGGCTGCAATGCCGAGAT+TGG | - | chr8_1:57215913-57215932 | Msa1203200:CDS | 60.0% | |
| ! | GCCCATACTTGAGCACTGCC+TGG | + | chr8_1:57218320-57218339 | None:intergenic | 60.0% |
| TGTCCATCGCACGAGCGCGA+TGG | - | chr8_1:57216837-57216856 | Msa1203200:CDS | 65.0% | |
| GTACCATCGCGCTCGTGCGA+TGG | + | chr8_1:57216843-57216862 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 57214023 | 57218757 | 57214023 | ID=Msa1203200;Name=Msa1203200 |
| chr8_1 | mRNA | 57214023 | 57218757 | 57214023 | ID=Msa1203200-mRNA-1;Parent=Msa1203200;Name=Msa1203200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=280|1|1|1|0.90|0.83|12|371|535 |
| chr8_1 | exon | 57214023 | 57214731 | 57214023 | ID=Msa1203200-mRNA-1:exon:18631;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57214821 | 57214879 | 57214821 | ID=Msa1203200-mRNA-1:exon:18630;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57215151 | 57215269 | 57215151 | ID=Msa1203200-mRNA-1:exon:18629;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57215365 | 57215430 | 57215365 | ID=Msa1203200-mRNA-1:exon:18628;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57215556 | 57215768 | 57215556 | ID=Msa1203200-mRNA-1:exon:18627;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57215887 | 57216006 | 57215887 | ID=Msa1203200-mRNA-1:exon:18626;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57216507 | 57216590 | 57216507 | ID=Msa1203200-mRNA-1:exon:18625;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57216754 | 57216874 | 57216754 | ID=Msa1203200-mRNA-1:exon:18624;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57217131 | 57217395 | 57217131 | ID=Msa1203200-mRNA-1:exon:18623;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57217661 | 57217772 | 57217661 | ID=Msa1203200-mRNA-1:exon:18622;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57217873 | 57218045 | 57217873 | ID=Msa1203200-mRNA-1:exon:18621;Parent=Msa1203200-mRNA-1 |
| chr8_1 | exon | 57218540 | 57218757 | 57218540 | ID=Msa1203200-mRNA-1:exon:18620;Parent=Msa1203200-mRNA-1 |
| chr8_1 | five_prime_UTR | 57218540 | 57218757 | 57218540 | ID=Msa1203200-mRNA-1:five_prime_utr;Parent=Msa1203200-mRNA-1 |
| chr8_1 | five_prime_UTR | 57217984 | 57218045 | 57217984 | ID=Msa1203200-mRNA-1:five_prime_utr;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57217873 | 57217983 | 57217873 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57217661 | 57217772 | 57217661 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57217131 | 57217395 | 57217131 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57216754 | 57216874 | 57216754 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57216507 | 57216590 | 57216507 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57215887 | 57216006 | 57215887 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57215556 | 57215768 | 57215556 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57215365 | 57215430 | 57215365 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57215151 | 57215269 | 57215151 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57214821 | 57214879 | 57214821 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | CDS | 57214394 | 57214731 | 57214394 | ID=Msa1203200-mRNA-1:cds;Parent=Msa1203200-mRNA-1 |
| chr8_1 | three_prime_UTR | 57214023 | 57214393 | 57214023 | ID=Msa1203200-mRNA-1:three_prime_utr;Parent=Msa1203200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
